Query psy16773
Match_columns 124
No_of_seqs 137 out of 1086
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:41:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0223 Fmt Methionyl-tRNA for 99.3 1.3E-12 2.8E-17 109.4 5.7 52 62-113 2-69 (307)
2 TIGR00460 fmt methionyl-tRNA f 98.9 2.7E-09 5.9E-14 87.4 5.6 38 62-99 1-38 (313)
3 PRK08125 bifunctional UDP-gluc 98.8 4.8E-09 1E-13 92.3 5.6 38 62-99 1-38 (660)
4 PRK06988 putative formyltransf 98.8 1.2E-08 2.6E-13 84.0 5.6 38 62-99 3-40 (312)
5 PLN02285 methionyl-tRNA formyl 98.7 1.5E-08 3.3E-13 84.4 5.7 40 60-99 5-50 (334)
6 PRK00005 fmt methionyl-tRNA fo 98.7 2.3E-08 5.1E-13 81.6 5.6 38 62-99 1-38 (309)
7 KOG2452|consensus 98.6 4.3E-08 9.3E-13 89.2 5.2 55 62-116 1-65 (881)
8 PF00551 Formyl_trans_N: Formy 97.9 2.6E-05 5.6E-10 59.0 5.5 38 62-99 1-42 (181)
9 COG2910 Putative NADH-flavin r 97.6 8.7E-05 1.9E-09 60.5 4.6 42 62-103 1-43 (211)
10 PF13460 NAD_binding_10: NADH( 96.6 0.0042 9.1E-08 44.6 4.6 36 64-99 1-37 (183)
11 PLN00141 Tic62-NAD(P)-related 96.0 0.012 2.6E-07 45.1 4.5 36 61-96 17-53 (251)
12 COG0569 TrkA K+ transport syst 95.9 0.0094 2E-07 47.0 3.8 38 62-99 1-38 (225)
13 PRK05653 fabG 3-ketoacyl-(acyl 95.9 0.02 4.4E-07 41.8 5.1 37 60-96 4-41 (246)
14 PF00289 CPSase_L_chain: Carba 95.7 0.012 2.5E-07 42.5 3.1 37 62-98 3-39 (110)
15 CHL00194 ycf39 Ycf39; Provisio 95.7 0.019 4.1E-07 45.7 4.5 35 62-96 1-36 (317)
16 PF01113 DapB_N: Dihydrodipico 95.6 0.044 9.5E-07 39.3 5.7 36 62-97 1-38 (124)
17 PLN02695 GDP-D-mannose-3',5'-e 95.5 0.04 8.6E-07 45.4 6.1 41 55-95 15-56 (370)
18 PF03807 F420_oxidored: NADP o 95.3 0.022 4.8E-07 37.7 3.4 35 63-97 1-39 (96)
19 PRK06249 2-dehydropantoate 2-r 95.2 0.052 1.1E-06 43.9 5.7 39 57-95 1-39 (313)
20 COG0702 Predicted nucleoside-d 95.1 0.033 7.2E-07 41.7 4.0 40 62-101 1-41 (275)
21 TIGR01915 npdG NADPH-dependent 94.9 0.047 1E-06 42.1 4.5 34 62-95 1-35 (219)
22 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.041 8.8E-07 42.3 4.1 36 62-97 1-36 (185)
23 TIGR03649 ergot_EASG ergot alk 94.8 0.059 1.3E-06 41.7 4.8 36 63-98 1-37 (285)
24 PLN02662 cinnamyl-alcohol dehy 94.7 0.08 1.7E-06 41.2 5.4 36 61-96 4-40 (322)
25 PRK14618 NAD(P)H-dependent gly 94.6 0.053 1.1E-06 43.9 4.3 36 61-96 4-39 (328)
26 COG0451 WcaG Nucleoside-diphos 94.5 0.088 1.9E-06 40.2 5.0 37 62-98 1-38 (314)
27 PRK07231 fabG 3-ketoacyl-(acyl 94.4 0.086 1.9E-06 39.0 4.8 37 60-96 4-41 (251)
28 PLN02657 3,8-divinyl protochlo 94.4 0.1 2.2E-06 43.8 5.6 38 60-97 59-97 (390)
29 PF10727 Rossmann-like: Rossma 94.3 0.034 7.4E-07 41.2 2.4 35 60-94 9-43 (127)
30 PRK06522 2-dehydropantoate 2-r 94.3 0.08 1.7E-06 41.3 4.6 35 62-96 1-35 (304)
31 PRK05557 fabG 3-ketoacyl-(acyl 94.2 0.14 2.9E-06 37.5 5.4 38 58-95 2-40 (248)
32 TIGR03466 HpnA hopanoid-associ 94.2 0.098 2.1E-06 40.3 4.8 35 62-96 1-36 (328)
33 PLN02240 UDP-glucose 4-epimera 94.2 0.14 3.1E-06 40.4 5.8 37 57-93 1-38 (352)
34 PF01408 GFO_IDH_MocA: Oxidore 94.2 0.12 2.7E-06 35.0 4.8 32 62-93 1-34 (120)
35 PRK13011 formyltetrahydrofolat 94.2 0.058 1.3E-06 44.6 3.7 35 59-95 87-128 (286)
36 PRK09288 purT phosphoribosylgl 94.1 0.16 3.4E-06 41.6 6.1 42 57-98 8-49 (395)
37 PF03446 NAD_binding_2: NAD bi 94.1 0.066 1.4E-06 39.5 3.6 35 62-96 2-36 (163)
38 PRK08462 biotin carboxylase; V 94.0 0.12 2.5E-06 43.6 5.4 36 62-97 5-40 (445)
39 PRK07326 short chain dehydroge 94.0 0.094 2E-06 38.7 4.3 36 61-96 6-42 (237)
40 PLN02650 dihydroflavonol-4-red 94.0 0.14 3.1E-06 41.0 5.5 38 59-96 3-41 (351)
41 PRK00094 gpsA NAD(P)H-dependen 93.9 0.082 1.8E-06 41.7 4.1 34 62-95 2-35 (325)
42 PLN02166 dTDP-glucose 4,6-dehy 93.9 0.13 2.8E-06 44.1 5.4 36 57-92 116-152 (436)
43 PRK11064 wecC UDP-N-acetyl-D-m 93.9 0.087 1.9E-06 45.0 4.3 38 61-98 3-40 (415)
44 PRK10675 UDP-galactose-4-epime 93.8 0.15 3.3E-06 40.0 5.3 31 62-92 1-32 (338)
45 PRK12833 acetyl-CoA carboxylas 93.8 0.17 3.6E-06 43.6 5.9 36 62-97 6-41 (467)
46 TIGR03570 NeuD_NnaD sugar O-ac 93.7 0.19 4.2E-06 36.3 5.4 32 63-94 1-32 (201)
47 PRK07679 pyrroline-5-carboxyla 93.6 0.12 2.6E-06 41.1 4.5 33 60-92 2-38 (279)
48 KOG1502|consensus 93.6 0.15 3.2E-06 43.8 5.3 40 60-99 5-45 (327)
49 TIGR01921 DAP-DH diaminopimela 93.4 0.17 3.6E-06 43.2 5.3 36 60-95 2-38 (324)
50 PRK12921 2-dehydropantoate 2-r 93.4 0.12 2.6E-06 40.6 4.1 31 62-92 1-31 (305)
51 PLN00198 anthocyanidin reducta 93.3 0.24 5.3E-06 39.3 5.7 36 61-96 9-45 (338)
52 TIGR03026 NDP-sugDHase nucleot 93.2 0.11 2.3E-06 43.8 3.8 36 62-97 1-36 (411)
53 PLN02688 pyrroline-5-carboxyla 93.2 0.11 2.5E-06 40.3 3.7 29 62-90 1-33 (266)
54 PRK07417 arogenate dehydrogena 93.2 0.11 2.4E-06 41.4 3.7 35 62-96 1-35 (279)
55 PLN02989 cinnamyl-alcohol dehy 93.1 0.28 6E-06 38.5 5.8 37 60-96 4-41 (325)
56 PRK12825 fabG 3-ketoacyl-(acyl 93.1 0.24 5.2E-06 36.2 5.0 34 62-95 7-41 (249)
57 PLN02427 UDP-apiose/xylose syn 93.0 0.21 4.5E-06 40.8 5.0 36 60-95 13-50 (386)
58 PLN00016 RNA-binding protein; 93.0 0.17 3.6E-06 41.5 4.5 37 60-96 51-92 (378)
59 PRK09496 trkA potassium transp 92.9 0.13 2.8E-06 42.6 3.8 35 62-96 1-35 (453)
60 PRK14619 NAD(P)H-dependent gly 92.7 0.27 6E-06 39.7 5.3 34 61-94 4-37 (308)
61 PLN02583 cinnamoyl-CoA reducta 92.7 0.33 7.2E-06 38.4 5.6 34 61-94 6-40 (297)
62 PLN02896 cinnamyl-alcohol dehy 92.6 0.25 5.5E-06 39.7 5.0 36 60-95 9-45 (353)
63 PRK15181 Vi polysaccharide bio 92.6 0.3 6.6E-06 39.4 5.5 35 60-94 14-49 (348)
64 PLN02986 cinnamyl-alcohol dehy 92.6 0.4 8.6E-06 37.7 6.0 36 61-96 5-41 (322)
65 PF00070 Pyr_redox: Pyridine n 92.6 0.45 9.8E-06 30.9 5.3 33 63-95 1-33 (80)
66 PLN02214 cinnamoyl-CoA reducta 92.5 0.29 6.4E-06 39.6 5.3 36 61-96 10-46 (342)
67 PRK12826 3-ketoacyl-(acyl-carr 92.5 0.22 4.8E-06 36.7 4.2 34 62-95 7-41 (251)
68 PRK10538 malonic semialdehyde 92.4 0.21 4.5E-06 37.8 4.0 35 62-96 1-36 (248)
69 PRK08264 short chain dehydroge 92.4 0.35 7.5E-06 35.9 5.2 38 60-97 5-44 (238)
70 PRK12828 short chain dehydroge 92.3 0.36 7.8E-06 35.2 5.0 36 61-96 7-43 (239)
71 PRK06027 purU formyltetrahydro 92.2 0.14 3E-06 42.3 3.1 38 58-97 86-129 (286)
72 PRK07178 pyruvate carboxylase 92.2 0.32 7E-06 41.9 5.4 36 63-98 4-39 (472)
73 PRK09599 6-phosphogluconate de 92.1 0.19 4.2E-06 40.5 3.8 32 62-93 1-32 (301)
74 PRK08229 2-dehydropantoate 2-r 92.1 0.29 6.2E-06 39.4 4.7 32 62-93 3-34 (341)
75 PRK08463 acetyl-CoA carboxylas 92.1 0.36 7.8E-06 41.8 5.6 37 62-98 3-39 (478)
76 PF05368 NmrA: NmrA-like famil 92.0 0.33 7.1E-06 36.5 4.7 33 64-96 1-34 (233)
77 TIGR00872 gnd_rel 6-phosphoglu 92.0 0.2 4.4E-06 40.5 3.8 34 62-95 1-34 (298)
78 PRK07454 short chain dehydroge 91.9 0.3 6.4E-06 36.4 4.3 37 60-96 4-42 (241)
79 PRK13302 putative L-aspartate 91.9 0.35 7.7E-06 39.2 5.0 34 60-93 5-40 (271)
80 PRK09072 short chain dehydroge 91.8 0.31 6.8E-06 37.0 4.4 37 59-95 3-40 (263)
81 PLN02206 UDP-glucuronate decar 91.7 0.47 1E-05 40.8 5.9 37 57-93 115-152 (442)
82 PRK09496 trkA potassium transp 91.7 0.28 6E-06 40.7 4.4 36 61-96 231-266 (453)
83 PRK07023 short chain dehydroge 91.7 0.4 8.7E-06 35.9 4.8 35 62-96 2-37 (243)
84 PRK15059 tartronate semialdehy 91.7 0.33 7.1E-06 39.5 4.6 33 62-94 1-33 (292)
85 PRK06179 short chain dehydroge 91.6 0.59 1.3E-05 35.5 5.8 41 62-102 5-46 (270)
86 TIGR01777 yfcH conserved hypot 91.6 0.35 7.7E-06 36.6 4.5 34 64-97 1-35 (292)
87 PRK06138 short chain dehydroge 91.6 0.37 8E-06 35.8 4.5 36 60-95 4-40 (252)
88 PRK06180 short chain dehydroge 91.5 0.38 8.2E-06 37.2 4.6 35 62-96 5-40 (277)
89 PRK05875 short chain dehydroge 91.4 0.39 8.5E-06 36.6 4.6 38 59-96 5-43 (276)
90 PF02254 TrkA_N: TrkA-N domain 91.3 0.28 6.1E-06 33.2 3.3 34 64-97 1-34 (116)
91 TIGR01214 rmlD dTDP-4-dehydror 91.0 0.39 8.5E-06 36.7 4.3 31 63-93 1-32 (287)
92 PRK07634 pyrroline-5-carboxyla 91.0 0.69 1.5E-05 35.4 5.6 25 60-84 3-27 (245)
93 PRK08591 acetyl-CoA carboxylas 90.9 0.47 1E-05 39.9 5.0 37 62-98 3-39 (451)
94 PRK14620 NAD(P)H-dependent gly 90.8 0.38 8.2E-06 38.8 4.2 33 62-94 1-33 (326)
95 PRK07825 short chain dehydroge 90.8 0.45 9.8E-06 36.3 4.4 37 60-96 4-41 (273)
96 PRK06719 precorrin-2 dehydroge 90.8 0.67 1.5E-05 34.8 5.3 31 60-90 12-42 (157)
97 PRK12490 6-phosphogluconate de 90.7 0.34 7.4E-06 39.1 3.8 33 62-94 1-33 (299)
98 TIGR02622 CDP_4_6_dhtase CDP-g 90.6 0.69 1.5E-05 37.1 5.5 35 61-95 4-39 (349)
99 PRK07060 short chain dehydroge 90.6 0.56 1.2E-05 34.7 4.7 36 60-95 8-44 (245)
100 PRK06111 acetyl-CoA carboxylas 90.6 0.56 1.2E-05 39.3 5.1 37 62-98 3-39 (450)
101 PRK11908 NAD-dependent epimera 90.6 0.47 1E-05 37.9 4.5 34 62-95 2-37 (347)
102 PF01370 Epimerase: NAD depend 90.6 0.75 1.6E-05 33.6 5.2 34 64-97 1-35 (236)
103 PF01118 Semialdhyde_dh: Semia 90.5 0.72 1.6E-05 32.5 5.0 33 63-95 1-35 (121)
104 TIGR01142 purT phosphoribosylg 90.5 0.61 1.3E-05 38.0 5.1 36 63-98 1-36 (380)
105 COG2084 MmsB 3-hydroxyisobutyr 90.4 0.43 9.4E-06 40.1 4.3 36 62-97 1-36 (286)
106 PRK06182 short chain dehydroge 90.4 0.5 1.1E-05 36.2 4.3 35 62-96 4-39 (273)
107 PRK12429 3-hydroxybutyrate deh 90.4 0.62 1.3E-05 34.6 4.7 35 62-96 5-40 (258)
108 PRK07102 short chain dehydroge 90.4 0.46 9.9E-06 35.6 4.0 35 62-96 2-37 (243)
109 PRK08300 acetaldehyde dehydrog 90.2 0.64 1.4E-05 39.3 5.2 34 60-93 3-37 (302)
110 PRK05586 biotin carboxylase; V 90.2 0.44 9.5E-06 40.5 4.2 36 62-97 3-38 (447)
111 PLN00093 geranylgeranyl diphos 90.1 1.7 3.7E-05 37.5 7.8 60 36-96 15-74 (450)
112 PRK12829 short chain dehydroge 90.1 0.68 1.5E-05 34.6 4.8 36 60-95 10-46 (264)
113 PRK11559 garR tartronate semia 90.1 0.4 8.6E-06 38.0 3.7 33 62-94 3-35 (296)
114 PRK06124 gluconate 5-dehydroge 90.0 0.72 1.6E-05 34.7 4.9 39 58-96 8-47 (256)
115 PRK12939 short chain dehydroge 89.9 0.68 1.5E-05 34.2 4.6 35 61-95 7-42 (250)
116 PRK05884 short chain dehydroge 89.9 0.45 9.8E-06 36.0 3.7 35 62-96 1-36 (223)
117 PRK06130 3-hydroxybutyryl-CoA 89.9 0.58 1.3E-05 37.4 4.5 34 62-95 5-38 (311)
118 PRK12827 short chain dehydroge 89.8 0.9 1.9E-05 33.5 5.1 33 61-93 6-39 (249)
119 TIGR00514 accC acetyl-CoA carb 89.8 0.59 1.3E-05 39.7 4.7 35 63-97 4-38 (449)
120 COG3804 Uncharacterized conser 89.7 0.67 1.4E-05 40.5 5.0 40 61-100 2-42 (350)
121 PRK05708 2-dehydropantoate 2-r 89.7 0.55 1.2E-05 38.2 4.3 35 61-95 2-36 (305)
122 PRK08642 fabG 3-ketoacyl-(acyl 89.6 1 2.2E-05 33.5 5.4 33 60-92 4-37 (253)
123 PRK07530 3-hydroxybutyryl-CoA 89.5 0.6 1.3E-05 37.2 4.3 35 62-96 5-39 (292)
124 PLN02256 arogenate dehydrogena 89.5 0.9 2E-05 37.6 5.5 34 60-93 35-68 (304)
125 PRK09186 flagellin modificatio 89.5 0.88 1.9E-05 34.0 4.9 36 61-96 4-40 (256)
126 PRK04148 hypothetical protein; 89.5 0.51 1.1E-05 35.7 3.7 37 60-97 16-52 (134)
127 TIGR03325 BphB_TodD cis-2,3-di 89.4 0.8 1.7E-05 34.9 4.7 36 60-95 4-40 (262)
128 PRK05479 ketol-acid reductoiso 89.3 0.91 2E-05 38.7 5.5 48 46-95 4-51 (330)
129 PRK13303 L-aspartate dehydroge 89.3 0.84 1.8E-05 36.7 5.1 33 62-94 2-35 (265)
130 PRK06914 short chain dehydroge 89.3 0.82 1.8E-05 34.9 4.8 34 63-96 5-39 (280)
131 PRK08654 pyruvate carboxylase 89.3 0.79 1.7E-05 40.4 5.3 37 62-98 3-39 (499)
132 PRK08017 oxidoreductase; Provi 89.3 0.72 1.6E-05 34.4 4.3 35 63-97 4-39 (256)
133 PRK06849 hypothetical protein; 89.2 1 2.2E-05 37.3 5.6 38 60-97 3-41 (389)
134 TIGR00036 dapB dihydrodipicoli 89.2 0.98 2.1E-05 36.4 5.4 34 62-95 2-37 (266)
135 PRK14106 murD UDP-N-acetylmura 89.1 0.91 2E-05 37.9 5.3 34 60-93 4-37 (450)
136 PRK07806 short chain dehydroge 89.1 1.1 2.3E-05 33.5 5.2 34 62-95 7-41 (248)
137 PRK05565 fabG 3-ketoacyl-(acyl 89.0 0.87 1.9E-05 33.5 4.5 34 62-95 6-41 (247)
138 PRK07577 short chain dehydroge 89.0 1.3 2.8E-05 32.6 5.5 35 62-96 4-39 (234)
139 PRK15461 NADH-dependent gamma- 89.0 0.61 1.3E-05 37.7 4.0 34 62-95 2-35 (296)
140 PRK08340 glucose-1-dehydrogena 88.9 0.65 1.4E-05 35.3 3.9 34 62-95 1-35 (259)
141 PRK02318 mannitol-1-phosphate 88.9 0.57 1.2E-05 39.4 3.9 34 62-95 1-35 (381)
142 PRK11880 pyrroline-5-carboxyla 88.8 0.55 1.2E-05 36.6 3.6 33 62-94 3-38 (267)
143 PF04321 RmlD_sub_bind: RmlD s 88.8 0.61 1.3E-05 37.3 3.9 29 62-90 1-30 (286)
144 cd01076 NAD_bind_1_Glu_DH NAD( 88.7 1.4 3E-05 35.1 5.9 44 60-103 30-73 (227)
145 PLN02778 3,5-epimerase/4-reduc 88.7 0.96 2.1E-05 36.2 5.0 31 60-90 8-39 (298)
146 PRK08664 aspartate-semialdehyd 88.7 1.1 2.4E-05 37.3 5.5 35 61-95 3-39 (349)
147 PRK06129 3-hydroxyacyl-CoA deh 88.6 0.61 1.3E-05 37.7 3.8 34 62-95 3-36 (308)
148 PRK09134 short chain dehydroge 88.6 1.5 3.2E-05 33.2 5.7 34 60-93 8-42 (258)
149 TIGR01505 tartro_sem_red 2-hyd 88.6 0.49 1.1E-05 37.6 3.2 33 63-95 1-33 (291)
150 TIGR01472 gmd GDP-mannose 4,6- 88.5 1 2.2E-05 35.9 5.0 33 63-95 2-35 (343)
151 PRK12320 hypothetical protein; 88.4 0.83 1.8E-05 42.6 5.0 34 62-95 1-35 (699)
152 PRK06172 short chain dehydroge 88.4 0.99 2.2E-05 33.9 4.6 36 61-96 7-43 (253)
153 PRK08507 prephenate dehydrogen 88.3 0.63 1.4E-05 36.9 3.7 33 62-94 1-35 (275)
154 PRK06476 pyrroline-5-carboxyla 88.3 0.7 1.5E-05 36.2 3.9 27 62-88 1-27 (258)
155 PRK09135 pteridine reductase; 88.3 1.3 2.9E-05 32.5 5.2 33 61-93 6-39 (249)
156 TIGR01832 kduD 2-deoxy-D-gluco 88.3 1.4 3E-05 32.9 5.3 34 61-94 5-39 (248)
157 PRK15057 UDP-glucose 6-dehydro 88.3 0.53 1.1E-05 40.3 3.4 35 62-97 1-35 (388)
158 PLN02686 cinnamoyl-CoA reducta 88.2 0.89 1.9E-05 37.5 4.6 36 60-95 52-88 (367)
159 PRK07890 short chain dehydroge 88.2 0.89 1.9E-05 34.0 4.2 36 60-95 4-40 (258)
160 PRK05866 short chain dehydroge 88.2 1.1 2.4E-05 35.5 5.0 40 57-96 36-76 (293)
161 PLN02653 GDP-mannose 4,6-dehyd 88.2 1.1 2.4E-05 35.6 5.0 35 61-95 6-41 (340)
162 PRK13394 3-hydroxybutyrate deh 88.1 1.2 2.6E-05 33.3 4.8 34 62-95 8-42 (262)
163 PRK08219 short chain dehydroge 88.1 0.75 1.6E-05 33.5 3.7 34 62-96 4-38 (227)
164 PRK06550 fabG 3-ketoacyl-(acyl 88.1 1.6 3.4E-05 32.3 5.5 35 62-96 6-41 (235)
165 PRK13304 L-aspartate dehydroge 88.1 0.97 2.1E-05 36.3 4.6 32 62-93 2-35 (265)
166 PRK07856 short chain dehydroge 88.0 1.4 3E-05 33.3 5.2 37 60-96 5-42 (252)
167 PRK08220 2,3-dihydroxybenzoate 88.0 1.5 3.3E-05 32.6 5.4 34 61-94 8-42 (252)
168 COG1004 Ugd Predicted UDP-gluc 88.0 0.73 1.6E-05 41.1 4.2 36 62-97 1-36 (414)
169 PRK07478 short chain dehydroge 87.9 1.1 2.4E-05 33.7 4.6 35 62-96 7-42 (254)
170 PRK07774 short chain dehydroge 87.9 1.2 2.6E-05 33.1 4.8 35 61-95 6-41 (250)
171 PRK06718 precorrin-2 dehydroge 87.8 1.3 2.7E-05 34.6 5.0 31 60-90 9-39 (202)
172 PRK09291 short chain dehydroge 87.8 0.83 1.8E-05 34.1 3.9 33 63-95 4-37 (257)
173 PF13738 Pyr_redox_3: Pyridine 87.8 1.3 2.7E-05 32.2 4.7 35 61-95 167-201 (203)
174 PRK05786 fabG 3-ketoacyl-(acyl 87.8 1.1 2.5E-05 33.0 4.5 34 62-95 6-40 (238)
175 PRK08177 short chain dehydroge 87.8 1.6 3.4E-05 32.5 5.3 36 62-97 2-38 (225)
176 cd05292 LDH_2 A subgroup of L- 87.6 1.1 2.3E-05 36.8 4.7 37 62-98 1-39 (308)
177 PLN02712 arogenate dehydrogena 87.5 1.2 2.7E-05 40.9 5.5 35 59-93 50-84 (667)
178 PRK08628 short chain dehydroge 87.5 1.4 3E-05 33.1 4.9 37 60-96 6-43 (258)
179 COG2085 Predicted dinucleotide 87.5 0.86 1.9E-05 37.2 4.0 34 62-95 2-35 (211)
180 PRK07819 3-hydroxybutyryl-CoA 87.3 1 2.2E-05 36.5 4.4 36 62-97 6-41 (286)
181 PRK08309 short chain dehydroge 87.2 0.94 2E-05 34.6 3.9 35 62-96 1-35 (177)
182 PRK08125 bifunctional UDP-gluc 87.2 1.2 2.6E-05 39.9 5.1 35 61-95 315-351 (660)
183 PLN02712 arogenate dehydrogena 87.1 1.1 2.5E-05 41.1 5.0 34 60-93 368-401 (667)
184 PRK07814 short chain dehydroge 87.1 1.2 2.6E-05 34.0 4.5 35 61-95 10-45 (263)
185 PRK00048 dihydrodipicolinate r 87.1 1.8 3.8E-05 34.6 5.6 33 62-94 2-36 (257)
186 cd01075 NAD_bind_Leu_Phe_Val_D 87.1 1.1 2.3E-05 34.8 4.2 34 60-93 27-60 (200)
187 TIGR00715 precor6x_red precorr 87.1 1.4 2.9E-05 36.1 5.0 35 62-97 1-36 (256)
188 cd01078 NAD_bind_H4MPT_DH NADP 87.0 1 2.2E-05 33.7 4.0 36 60-95 27-63 (194)
189 PRK06200 2,3-dihydroxy-2,3-dih 87.0 1.3 2.8E-05 33.6 4.6 34 62-95 7-41 (263)
190 PF01210 NAD_Gly3P_dh_N: NAD-d 87.0 0.67 1.4E-05 34.1 2.9 33 63-95 1-33 (157)
191 PRK06928 pyrroline-5-carboxyla 86.9 1.4 3.1E-05 35.3 5.0 33 62-94 2-38 (277)
192 PRK07523 gluconate 5-dehydroge 86.8 1.3 2.9E-05 33.3 4.5 34 62-95 11-45 (255)
193 PRK06949 short chain dehydroge 86.8 1.2 2.7E-05 33.2 4.3 36 61-96 9-45 (258)
194 PRK06523 short chain dehydroge 86.7 1.9 4.2E-05 32.4 5.3 37 60-96 8-45 (260)
195 PRK05867 short chain dehydroge 86.6 1.4 3.1E-05 33.2 4.6 35 61-95 9-44 (253)
196 cd01065 NAD_bind_Shikimate_DH 86.5 1.3 2.8E-05 31.2 4.1 37 60-96 18-55 (155)
197 PRK06463 fabG 3-ketoacyl-(acyl 86.5 2.1 4.5E-05 32.3 5.4 35 60-94 6-41 (255)
198 PRK06841 short chain dehydroge 86.5 1.9 4.2E-05 32.2 5.2 36 60-95 14-50 (255)
199 PRK08217 fabG 3-ketoacyl-(acyl 86.5 1.5 3.3E-05 32.3 4.6 35 61-95 5-40 (253)
200 PRK05993 short chain dehydroge 86.4 1.6 3.5E-05 33.8 4.8 35 62-96 5-40 (277)
201 PRK07531 bifunctional 3-hydrox 86.3 0.97 2.1E-05 39.5 4.0 35 62-96 5-39 (495)
202 smart00859 Semialdhyde_dh Semi 86.3 1.7 3.6E-05 30.2 4.4 32 63-94 1-34 (122)
203 PRK08703 short chain dehydroge 86.2 1.6 3.5E-05 32.5 4.6 35 62-96 7-42 (239)
204 PRK15182 Vi polysaccharide bio 86.1 0.94 2E-05 39.2 3.8 36 61-97 6-41 (425)
205 PLN02572 UDP-sulfoquinovose sy 86.1 1.5 3.3E-05 37.6 5.0 32 60-91 46-78 (442)
206 PRK07666 fabG 3-ketoacyl-(acyl 86.0 1.6 3.4E-05 32.5 4.5 34 62-95 8-42 (239)
207 PRK08278 short chain dehydroge 86.0 2.5 5.3E-05 32.8 5.7 36 61-96 6-42 (273)
208 PLN02545 3-hydroxybutyryl-CoA 86.0 1.3 2.8E-05 35.3 4.3 35 62-96 5-39 (295)
209 PRK12936 3-ketoacyl-(acyl-carr 85.9 1.7 3.8E-05 32.0 4.6 35 61-95 6-41 (245)
210 PRK06171 sorbitol-6-phosphate 85.8 2.6 5.6E-05 31.9 5.7 38 60-97 8-46 (266)
211 PRK06114 short chain dehydroge 85.8 2.9 6.3E-05 31.6 5.9 36 60-95 7-43 (254)
212 COG1893 ApbA Ketopantoate redu 85.8 1.3 2.9E-05 36.7 4.4 33 62-94 1-33 (307)
213 PTZ00431 pyrroline carboxylate 85.8 1.8 4E-05 34.3 5.0 34 61-94 3-40 (260)
214 PRK08945 putative oxoacyl-(acy 85.6 1.4 3E-05 33.0 4.1 35 61-95 12-47 (247)
215 PRK06924 short chain dehydroge 85.6 2 4.3E-05 32.1 4.9 32 63-94 3-35 (251)
216 PRK07680 late competence prote 85.5 1 2.2E-05 35.7 3.4 24 62-85 1-24 (273)
217 TIGR03206 benzo_BadH 2-hydroxy 85.5 1.5 3.1E-05 32.6 4.0 35 62-96 4-39 (250)
218 TIGR00465 ilvC ketol-acid redu 85.4 1.7 3.7E-05 36.4 4.9 31 61-91 3-33 (314)
219 PTZ00345 glycerol-3-phosphate 85.4 2.3 5E-05 36.5 5.7 39 57-95 7-52 (365)
220 PRK06035 3-hydroxyacyl-CoA deh 85.4 1.2 2.6E-05 35.6 3.8 35 62-96 4-38 (291)
221 PLN03209 translocon at the inn 85.4 1.5 3.2E-05 40.3 4.8 36 62-97 81-117 (576)
222 PRK06057 short chain dehydroge 85.3 1.8 3.9E-05 32.7 4.6 35 62-96 8-43 (255)
223 PLN02828 formyltetrahydrofolat 85.3 2.3 5.1E-05 35.4 5.6 37 60-98 69-111 (268)
224 PRK08655 prephenate dehydrogen 85.3 1.4 3.1E-05 38.0 4.5 35 62-96 1-36 (437)
225 PRK08277 D-mannonate oxidoredu 85.1 1.9 4.1E-05 33.0 4.6 36 60-95 9-45 (278)
226 PRK12491 pyrroline-5-carboxyla 85.0 1.1 2.4E-05 36.2 3.5 24 62-85 3-26 (272)
227 PRK07035 short chain dehydroge 85.0 1.9 4.2E-05 32.3 4.5 34 62-95 9-43 (252)
228 PRK06500 short chain dehydroge 84.9 1.8 3.9E-05 32.1 4.3 34 62-95 7-41 (249)
229 PRK08267 short chain dehydroge 84.9 1.5 3.2E-05 33.1 3.9 34 63-96 3-37 (260)
230 PRK10217 dTDP-glucose 4,6-dehy 84.8 2.2 4.8E-05 33.9 5.1 32 62-93 2-34 (355)
231 PRK05650 short chain dehydroge 84.6 1.7 3.7E-05 33.2 4.2 34 62-95 1-35 (270)
232 PRK07201 short chain dehydroge 84.6 1.9 4.1E-05 37.4 4.9 34 62-95 1-37 (657)
233 TIGR01963 PHB_DH 3-hydroxybuty 84.5 1.5 3.2E-05 32.6 3.7 33 63-95 3-36 (255)
234 PRK06077 fabG 3-ketoacyl-(acyl 84.5 3.1 6.7E-05 30.9 5.4 31 62-92 7-38 (252)
235 TIGR01179 galE UDP-glucose-4-e 84.5 1.9 4.1E-05 32.9 4.4 28 63-90 1-29 (328)
236 PRK05808 3-hydroxybutyryl-CoA 84.4 1.3 2.9E-05 35.1 3.6 35 62-96 4-38 (282)
237 PRK07067 sorbitol dehydrogenas 84.4 2.1 4.6E-05 32.2 4.6 34 62-95 7-41 (257)
238 PLN02353 probable UDP-glucose 84.3 1.4 3.1E-05 38.9 4.1 36 62-97 2-39 (473)
239 PRK06125 short chain dehydroge 84.3 2.1 4.5E-05 32.4 4.5 37 60-96 6-43 (259)
240 PRK07024 short chain dehydroge 84.2 1.7 3.7E-05 33.0 4.0 35 62-96 3-38 (257)
241 PRK08251 short chain dehydroge 84.2 1.9 4.1E-05 32.2 4.2 35 62-96 3-38 (248)
242 PRK00436 argC N-acetyl-gamma-g 84.2 2.4 5.3E-05 35.4 5.3 32 62-93 3-36 (343)
243 PRK11579 putative oxidoreducta 84.2 2.7 5.9E-05 34.3 5.4 34 60-93 3-38 (346)
244 PRK07062 short chain dehydroge 84.0 2.2 4.9E-05 32.3 4.6 35 62-96 9-44 (265)
245 PRK07576 short chain dehydroge 84.0 2.1 4.5E-05 32.9 4.5 35 62-96 10-45 (264)
246 PRK09260 3-hydroxybutyryl-CoA 84.0 1.4 3.1E-05 35.1 3.6 34 63-96 3-36 (288)
247 PRK12439 NAD(P)H-dependent gly 84.0 1.7 3.7E-05 35.9 4.3 35 60-95 6-40 (341)
248 COG0240 GpsA Glycerol-3-phosph 83.8 1.6 3.4E-05 37.7 4.1 34 62-95 2-35 (329)
249 TIGR00639 PurN phosphoribosylg 83.8 2.4 5.3E-05 33.0 4.8 33 62-94 1-37 (190)
250 PRK07074 short chain dehydroge 83.8 2.2 4.8E-05 32.0 4.5 34 63-96 4-38 (257)
251 PRK08085 gluconate 5-dehydroge 83.8 2.3 5E-05 32.0 4.5 34 62-95 10-44 (254)
252 COG0345 ProC Pyrroline-5-carbo 83.7 1.3 2.8E-05 36.8 3.4 23 62-84 2-24 (266)
253 PRK08862 short chain dehydroge 83.7 2.4 5.3E-05 32.4 4.7 37 60-96 4-41 (227)
254 PRK08213 gluconate 5-dehydroge 83.6 2.1 4.6E-05 32.3 4.3 36 61-96 12-48 (259)
255 PRK06019 phosphoribosylaminoim 83.5 3.1 6.7E-05 34.6 5.6 37 62-98 3-39 (372)
256 PRK08293 3-hydroxybutyryl-CoA 83.4 2.1 4.5E-05 34.2 4.4 34 62-95 4-37 (287)
257 PRK05647 purN phosphoribosylgl 83.3 2.7 6E-05 32.9 4.9 34 62-95 2-39 (200)
258 PRK12937 short chain dehydroge 83.3 3.4 7.4E-05 30.5 5.2 33 60-92 4-37 (245)
259 PRK06482 short chain dehydroge 83.2 2 4.3E-05 32.9 4.0 35 62-96 3-38 (276)
260 cd05291 HicDH_like L-2-hydroxy 83.2 2.4 5.1E-05 34.5 4.7 36 63-98 2-39 (306)
261 PRK06181 short chain dehydroge 83.1 2.1 4.6E-05 32.3 4.1 34 62-95 2-36 (263)
262 smart00846 Gp_dh_N Glyceraldeh 83.1 2.8 6.1E-05 31.5 4.7 31 62-92 1-32 (149)
263 PRK08263 short chain dehydroge 83.0 2.4 5.2E-05 32.6 4.4 35 62-96 4-39 (275)
264 PRK11150 rfaD ADP-L-glycero-D- 83.0 2.8 6.1E-05 32.7 4.9 32 64-95 2-34 (308)
265 PRK07502 cyclohexadienyl dehyd 83.0 2 4.3E-05 34.6 4.2 34 62-95 7-42 (307)
266 PLN02358 glyceraldehyde-3-phos 82.9 2.5 5.4E-05 36.1 4.9 35 57-91 1-36 (338)
267 PRK10669 putative cation:proto 82.9 1.3 2.9E-05 38.7 3.4 36 62-97 418-453 (558)
268 PRK06101 short chain dehydroge 82.9 1.9 4.1E-05 32.5 3.8 34 63-96 3-37 (240)
269 PRK12744 short chain dehydroge 82.9 4.1 8.8E-05 30.8 5.6 35 61-95 8-43 (257)
270 TIGR02712 urea_carbox urea car 82.9 2.7 5.8E-05 41.3 5.7 37 62-98 2-38 (1201)
271 TIGR01746 Thioester-redct thio 82.9 2.7 5.8E-05 32.5 4.7 33 63-95 1-36 (367)
272 PF13434 K_oxygenase: L-lysine 82.8 0.89 1.9E-05 38.0 2.2 38 60-97 189-228 (341)
273 TIGR01161 purK phosphoribosyla 82.8 2.7 5.9E-05 34.3 4.9 36 63-98 1-36 (352)
274 PRK06196 oxidoreductase; Provi 82.7 2.6 5.6E-05 33.4 4.6 35 62-96 27-62 (315)
275 PF02558 ApbA: Ketopantoate re 82.5 3.8 8.2E-05 28.9 5.0 31 64-94 1-31 (151)
276 PRK12746 short chain dehydroge 82.5 3.7 8E-05 30.7 5.2 32 62-93 7-39 (254)
277 PRK07579 hypothetical protein; 82.5 2.4 5.1E-05 35.1 4.5 35 62-96 2-40 (245)
278 PRK00066 ldh L-lactate dehydro 82.4 3.4 7.3E-05 34.3 5.4 40 57-96 2-43 (315)
279 PRK07453 protochlorophyllide o 82.3 2.5 5.5E-05 33.5 4.5 35 62-96 7-42 (322)
280 PF00044 Gp_dh_N: Glyceraldehy 82.3 2.5 5.4E-05 32.2 4.2 30 62-91 1-31 (151)
281 PRK06194 hypothetical protein; 82.3 3.3 7.1E-05 31.8 4.9 34 62-95 7-41 (287)
282 PRK04207 glyceraldehyde-3-phos 82.2 2.7 6E-05 35.3 4.9 31 62-92 2-33 (341)
283 PRK09987 dTDP-4-dehydrorhamnos 82.2 2.3 4.9E-05 33.8 4.1 31 62-93 1-32 (299)
284 PRK05671 aspartate-semialdehyd 82.1 3.3 7.1E-05 35.1 5.3 27 61-87 4-31 (336)
285 PRK09730 putative NAD(P)-bindi 81.9 3.3 7.1E-05 30.6 4.6 30 63-92 3-33 (247)
286 PRK12480 D-lactate dehydrogena 81.9 3.1 6.7E-05 34.8 5.0 36 60-95 145-180 (330)
287 PRK05693 short chain dehydroge 81.8 2.5 5.4E-05 32.4 4.1 34 63-96 3-37 (274)
288 PRK05472 redox-sensing transcr 81.7 3.7 8.1E-05 31.7 5.1 33 61-93 84-118 (213)
289 PRK06545 prephenate dehydrogen 81.7 2.7 5.9E-05 35.0 4.6 33 63-95 2-34 (359)
290 PRK07494 2-octaprenyl-6-methox 81.6 3.3 7.2E-05 33.4 4.9 38 57-94 3-40 (388)
291 PRK03659 glutathione-regulated 81.5 1.7 3.7E-05 39.0 3.5 37 61-97 400-436 (601)
292 PRK06223 malate dehydrogenase; 81.5 3.9 8.5E-05 32.8 5.3 36 62-97 3-39 (307)
293 PRK07832 short chain dehydroge 81.5 2.5 5.4E-05 32.4 4.0 33 63-95 2-35 (272)
294 PF13241 NAD_binding_7: Putati 81.4 2.4 5.1E-05 29.3 3.6 34 60-93 6-39 (103)
295 cd05211 NAD_bind_Glu_Leu_Phe_V 81.3 4.3 9.2E-05 32.2 5.4 35 60-94 22-56 (217)
296 cd05294 LDH-like_MDH_nadp A la 81.3 3.7 8E-05 33.8 5.2 33 62-94 1-36 (309)
297 PRK06398 aldose dehydrogenase; 81.3 5.2 0.00011 30.6 5.7 34 62-95 7-41 (258)
298 COG1748 LYS9 Saccharopine dehy 81.3 2.1 4.5E-05 37.6 3.9 37 62-98 2-39 (389)
299 TIGR03215 ac_ald_DH_ac acetald 81.3 3.3 7.1E-05 34.6 4.9 35 61-95 1-37 (285)
300 PRK08265 short chain dehydroge 81.2 4 8.7E-05 31.2 5.0 34 62-95 7-41 (261)
301 PF02737 3HCDH_N: 3-hydroxyacy 81.1 3 6.6E-05 31.7 4.3 34 63-96 1-34 (180)
302 PRK06701 short chain dehydroge 81.0 5.1 0.00011 31.6 5.7 36 60-95 45-81 (290)
303 PRK10084 dTDP-glucose 4,6 dehy 80.8 3 6.6E-05 33.1 4.4 29 62-90 1-31 (352)
304 PRK06197 short chain dehydroge 80.8 2.5 5.4E-05 33.2 3.9 35 61-95 16-51 (306)
305 PRK07236 hypothetical protein; 80.8 6.4 0.00014 32.1 6.4 37 59-95 4-40 (386)
306 PRK07097 gluconate 5-dehydroge 80.7 3.9 8.5E-05 31.1 4.8 36 60-95 9-45 (265)
307 PRK07775 short chain dehydroge 80.6 3.4 7.4E-05 31.9 4.5 34 62-95 11-45 (274)
308 PRK06270 homoserine dehydrogen 80.5 3 6.5E-05 34.8 4.5 32 61-92 2-43 (341)
309 PRK05865 hypothetical protein; 80.5 3.1 6.7E-05 39.8 5.1 33 62-94 1-34 (854)
310 PRK12743 oxidoreductase; Provi 80.4 3.8 8.2E-05 31.1 4.6 32 63-94 4-36 (256)
311 TIGR01830 3oxo_ACP_reduc 3-oxo 80.3 3.6 7.9E-05 30.1 4.4 30 65-94 2-32 (239)
312 PLN02735 carbamoyl-phosphate s 80.2 3.8 8.2E-05 39.9 5.6 37 61-97 23-70 (1102)
313 PRK08643 acetoin reductase; Va 80.2 3.8 8.3E-05 30.7 4.6 34 63-96 4-38 (256)
314 PRK06483 dihydromonapterin red 80.1 5.2 0.00011 29.7 5.2 34 62-95 3-37 (236)
315 PF13380 CoA_binding_2: CoA bi 79.8 3.8 8.3E-05 29.2 4.3 28 63-90 2-33 (116)
316 PRK07904 short chain dehydroge 79.7 5.2 0.00011 30.8 5.3 36 61-96 8-45 (253)
317 PRK06953 short chain dehydroge 79.7 3.4 7.4E-05 30.6 4.1 34 63-96 3-37 (222)
318 PRK12367 short chain dehydroge 79.3 3.8 8.3E-05 32.0 4.5 33 62-94 15-48 (245)
319 PRK07206 hypothetical protein; 79.3 4.6 9.9E-05 33.4 5.1 36 62-97 3-38 (416)
320 PRK06113 7-alpha-hydroxysteroi 79.2 5.3 0.00012 30.1 5.1 35 59-93 9-44 (255)
321 PRK08063 enoyl-(acyl carrier p 79.2 5.7 0.00012 29.5 5.2 31 62-92 5-36 (250)
322 PRK08226 short chain dehydroge 79.2 5 0.00011 30.2 4.9 33 62-94 7-40 (263)
323 PRK07424 bifunctional sterol d 78.9 6.1 0.00013 34.3 6.0 37 60-96 177-214 (406)
324 PRK12745 3-ketoacyl-(acyl-carr 78.7 5.8 0.00013 29.6 5.1 32 63-94 4-36 (256)
325 PRK07063 short chain dehydroge 78.7 4.2 9.2E-05 30.7 4.4 34 62-95 8-42 (260)
326 PRK12815 carB carbamoyl phosph 78.6 4.1 8.8E-05 39.3 5.2 36 62-97 8-54 (1068)
327 COG0300 DltE Short-chain dehyd 78.6 3.4 7.4E-05 34.4 4.2 38 60-97 5-43 (265)
328 PLN02948 phosphoribosylaminoim 78.6 5.5 0.00012 36.0 5.8 39 60-98 21-59 (577)
329 PF01262 AlaDh_PNT_C: Alanine 78.5 3.2 6.9E-05 30.8 3.7 37 61-97 20-56 (168)
330 PRK12742 oxidoreductase; Provi 78.4 6.3 0.00014 29.0 5.2 31 62-92 7-38 (237)
331 PRK12824 acetoacetyl-CoA reduc 78.2 5.7 0.00012 29.2 4.9 33 63-95 4-37 (245)
332 PLN02253 xanthoxin dehydrogena 77.9 5.7 0.00012 30.4 5.0 35 61-95 18-53 (280)
333 COG0289 DapB Dihydrodipicolina 77.8 6 0.00013 33.5 5.5 38 61-98 2-41 (266)
334 KOG1429|consensus 77.8 4.5 9.8E-05 35.5 4.8 36 60-95 26-62 (350)
335 PRK06349 homoserine dehydrogen 77.7 3.9 8.5E-05 35.2 4.5 33 60-92 2-44 (426)
336 COG0673 MviM Predicted dehydro 77.6 5.3 0.00011 31.5 4.9 36 60-95 2-40 (342)
337 PRK11199 tyrA bifunctional cho 77.6 4.5 9.8E-05 34.2 4.7 33 61-93 98-131 (374)
338 PRK06935 2-deoxy-D-gluconate 3 77.4 7.6 0.00016 29.4 5.5 33 61-93 15-48 (258)
339 PTZ00082 L-lactate dehydrogena 77.4 6.4 0.00014 32.8 5.5 38 60-97 5-43 (321)
340 PRK07109 short chain dehydroge 77.4 4.7 0.0001 32.8 4.7 34 62-95 9-43 (334)
341 PRK07045 putative monooxygenas 77.4 8.8 0.00019 31.2 6.2 39 57-95 1-39 (388)
342 COG1028 FabG Dehydrogenases wi 77.3 7.9 0.00017 28.9 5.5 37 60-96 4-41 (251)
343 PF03033 Glyco_transf_28: Glyc 77.3 3.3 7.1E-05 28.5 3.2 22 74-96 16-37 (139)
344 PRK00711 D-amino acid dehydrog 77.1 5.1 0.00011 32.6 4.7 32 62-93 1-32 (416)
345 PLN02871 UDP-sulfoquinovose:DA 77.1 5.7 0.00012 33.4 5.2 39 59-97 56-104 (465)
346 PRK06947 glucose-1-dehydrogena 76.9 6.2 0.00013 29.4 4.8 32 62-93 3-35 (248)
347 PF00899 ThiF: ThiF family; I 76.9 4 8.7E-05 28.9 3.7 25 61-85 2-26 (135)
348 PRK06753 hypothetical protein; 76.8 8.4 0.00018 30.9 5.9 34 62-95 1-34 (373)
349 PRK07069 short chain dehydroge 76.7 5.4 0.00012 29.6 4.4 31 63-93 1-32 (251)
350 PRK09242 tropinone reductase; 76.7 5.2 0.00011 30.1 4.4 34 62-95 10-44 (257)
351 PF01494 FAD_binding_3: FAD bi 76.5 13 0.00029 28.4 6.6 41 62-102 2-42 (356)
352 cd05213 NAD_bind_Glutamyl_tRNA 76.4 3.9 8.4E-05 33.5 3.9 38 60-97 177-215 (311)
353 PRK06198 short chain dehydroge 76.4 5.1 0.00011 30.1 4.3 34 62-95 7-42 (260)
354 PRK07066 3-hydroxybutyryl-CoA 76.4 4.4 9.6E-05 34.1 4.3 35 62-96 8-42 (321)
355 TIGR00978 asd_EA aspartate-sem 76.3 5.9 0.00013 33.0 5.0 34 62-95 1-36 (341)
356 PRK08305 spoVFB dipicolinate s 76.3 7.2 0.00016 31.2 5.3 40 57-96 1-45 (196)
357 PRK12409 D-amino acid dehydrog 76.1 5.4 0.00012 32.6 4.7 32 62-93 2-33 (410)
358 TIGR01181 dTDP_gluc_dehyt dTDP 76.1 4.6 0.0001 30.7 4.0 29 63-91 1-32 (317)
359 PRK05717 oxidoreductase; Valid 76.0 5.9 0.00013 29.9 4.6 34 62-95 11-45 (255)
360 PRK05447 1-deoxy-D-xylulose 5- 75.9 5.8 0.00013 34.9 5.0 34 62-95 2-38 (385)
361 PRK01438 murD UDP-N-acetylmura 75.9 6.8 0.00015 33.3 5.4 33 61-93 16-48 (480)
362 PF02441 Flavoprotein: Flavopr 75.9 3.7 8.1E-05 29.3 3.3 33 62-94 1-37 (129)
363 PRK06139 short chain dehydroge 75.6 4.8 0.0001 33.0 4.3 35 62-96 8-43 (330)
364 PF07992 Pyr_redox_2: Pyridine 75.6 7.4 0.00016 27.9 4.8 28 63-90 1-28 (201)
365 PLN02260 probable rhamnose bio 75.5 5.2 0.00011 35.5 4.7 34 60-93 5-41 (668)
366 PRK12384 sorbitol-6-phosphate 75.4 6 0.00013 29.7 4.4 33 63-95 4-37 (259)
367 TIGR01763 MalateDH_bact malate 75.3 5.4 0.00012 32.9 4.5 36 62-97 2-38 (305)
368 PLN02968 Probable N-acetyl-gam 75.1 8 0.00017 33.3 5.6 36 60-95 37-74 (381)
369 PRK13403 ketol-acid reductoiso 75.1 7.4 0.00016 33.8 5.4 46 46-93 3-48 (335)
370 PLN02602 lactate dehydrogenase 75.0 8.1 0.00018 33.0 5.6 36 62-97 38-75 (350)
371 PRK12481 2-deoxy-D-gluconate 3 75.0 7.9 0.00017 29.5 5.1 32 62-93 9-41 (251)
372 PF02826 2-Hacid_dh_C: D-isome 74.7 11 0.00023 28.3 5.6 37 60-96 35-71 (178)
373 PF01488 Shikimate_DH: Shikima 74.7 9.6 0.00021 27.4 5.2 37 60-96 11-48 (135)
374 cd05191 NAD_bind_amino_acid_DH 74.5 10 0.00023 25.1 5.0 32 60-91 22-53 (86)
375 PRK07677 short chain dehydroge 74.4 6.2 0.00013 29.7 4.3 35 62-96 2-37 (252)
376 TIGR01470 cysG_Nterm siroheme 74.4 8 0.00017 30.2 5.1 30 62-91 10-39 (205)
377 COG3349 Uncharacterized conser 74.3 4.1 8.8E-05 36.9 3.8 32 62-93 1-32 (485)
378 PRK15204 undecaprenyl-phosphat 74.2 8.5 0.00018 33.7 5.7 33 62-94 147-182 (476)
379 TIGR00877 purD phosphoribosyla 74.1 5.3 0.00011 33.3 4.2 35 62-97 1-35 (423)
380 TIGR01316 gltA glutamate synth 74.1 8 0.00017 33.0 5.3 39 58-97 130-168 (449)
381 PF00743 FMO-like: Flavin-bind 73.8 7.1 0.00015 34.9 5.2 36 62-98 2-37 (531)
382 PLN02172 flavin-containing mon 73.7 6.7 0.00015 34.2 4.9 30 61-90 10-39 (461)
383 KOG1203|consensus 73.5 5 0.00011 35.6 4.1 41 59-99 77-118 (411)
384 PF13477 Glyco_trans_4_2: Glyc 73.3 9.4 0.0002 26.0 4.6 34 63-96 1-36 (139)
385 cd03360 LbH_AT_putative Putati 73.2 6 0.00013 27.8 3.7 29 66-94 1-30 (197)
386 PRK12999 pyruvate carboxylase; 73.2 8.5 0.00018 37.8 5.9 35 63-97 7-41 (1146)
387 PRK08163 salicylate hydroxylas 73.2 14 0.0003 29.9 6.3 36 60-95 3-38 (396)
388 PRK07578 short chain dehydroge 73.0 9.6 0.00021 27.7 4.9 32 62-94 1-33 (199)
389 PRK14874 aspartate-semialdehyd 72.9 7.8 0.00017 32.2 4.9 33 62-94 2-38 (334)
390 PRK05855 short chain dehydroge 72.8 7.2 0.00016 32.5 4.7 36 60-95 314-350 (582)
391 TIGR01369 CPSaseII_lrg carbamo 72.8 13 0.00028 35.8 6.9 39 60-98 553-602 (1050)
392 PRK05854 short chain dehydroge 72.7 7 0.00015 31.3 4.4 35 62-96 15-50 (313)
393 PF08497 Radical_SAM_N: Radica 72.6 5.4 0.00012 34.4 4.0 45 39-97 13-58 (302)
394 COG0665 DadA Glycine/D-amino a 72.6 9.1 0.0002 30.5 5.1 35 60-94 3-37 (387)
395 TIGR03589 PseB UDP-N-acetylglu 72.5 8.2 0.00018 31.1 4.8 35 61-95 4-41 (324)
396 PRK12823 benD 1,6-dihydroxycyc 72.4 11 0.00023 28.4 5.2 32 62-93 9-41 (260)
397 PRK12748 3-ketoacyl-(acyl-carr 72.4 9.8 0.00021 28.7 5.0 32 62-93 6-40 (256)
398 PF01266 DAO: FAD dependent ox 72.0 9.4 0.0002 29.2 4.8 31 63-93 1-31 (358)
399 PRK09009 C factor cell-cell si 72.0 10 0.00022 28.0 4.9 33 62-94 1-36 (235)
400 TIGR03022 WbaP_sugtrans Undeca 71.9 9.6 0.00021 32.4 5.3 33 62-94 126-161 (456)
401 TIGR01761 thiaz-red thiazoliny 71.9 8 0.00017 32.9 4.8 34 60-94 2-37 (343)
402 PRK10307 putative glycosyl tra 71.8 7.8 0.00017 31.5 4.6 26 72-97 20-45 (412)
403 PF00056 Ldh_1_N: lactate/mala 71.8 6.3 0.00014 28.9 3.7 36 62-97 1-39 (141)
404 PLN02464 glycerol-3-phosphate 71.5 3.6 7.9E-05 37.2 2.9 67 26-92 32-102 (627)
405 PLN02858 fructose-bisphosphate 71.5 5.3 0.00011 39.9 4.1 35 62-96 325-359 (1378)
406 PRK12810 gltD glutamate syntha 71.5 9.6 0.00021 32.7 5.2 32 59-90 141-172 (471)
407 PRK06847 hypothetical protein; 71.4 17 0.00036 29.1 6.3 35 61-95 4-38 (375)
408 COG3640 CooC CO dehydrogenase 71.3 7 0.00015 33.1 4.3 34 62-95 1-40 (255)
409 TIGR03023 WcaJ_sugtrans Undeca 71.1 11 0.00023 32.0 5.4 35 62-96 129-166 (451)
410 PLN02735 carbamoyl-phosphate s 71.1 9.4 0.0002 37.2 5.6 39 60-98 573-622 (1102)
411 PRK12770 putative glutamate sy 71.1 13 0.00028 30.3 5.7 38 59-97 16-53 (352)
412 PRK08993 2-deoxy-D-gluconate 3 70.9 12 0.00026 28.4 5.2 30 62-91 11-41 (253)
413 PRK07201 short chain dehydroge 70.9 7 0.00015 33.9 4.4 35 62-96 372-407 (657)
414 PRK13984 putative oxidoreducta 70.8 12 0.00026 33.0 5.8 38 59-97 281-318 (604)
415 cd03784 GT1_Gtf_like This fami 70.8 6.4 0.00014 31.8 3.8 33 62-94 1-38 (401)
416 PTZ00142 6-phosphogluconate de 70.7 4.9 0.00011 35.6 3.4 35 62-96 2-36 (470)
417 PRK05294 carB carbamoyl phosph 70.7 9.3 0.0002 36.7 5.5 35 62-96 8-53 (1066)
418 PTZ00117 malate dehydrogenase; 70.6 12 0.00026 31.0 5.5 38 60-97 4-42 (319)
419 cd03802 GT1_AviGT4_like This f 70.5 14 0.0003 28.0 5.4 34 62-95 1-47 (335)
420 PRK07533 enoyl-(acyl carrier p 70.5 13 0.00027 28.6 5.3 35 60-94 9-46 (258)
421 TIGR03736 PRTRC_ThiF PRTRC sys 70.4 7.4 0.00016 31.9 4.2 41 57-97 7-56 (244)
422 TIGR01035 hemA glutamyl-tRNA r 70.4 6.8 0.00015 33.6 4.1 36 61-96 180-216 (417)
423 PRK04308 murD UDP-N-acetylmura 70.3 11 0.00024 31.8 5.3 34 61-94 5-38 (445)
424 PRK06392 homoserine dehydrogen 70.3 13 0.00028 31.5 5.7 32 62-93 1-40 (326)
425 PRK06484 short chain dehydroge 70.2 9.5 0.00021 32.2 4.9 35 62-96 6-41 (520)
426 TIGR01532 E4PD_g-proteo D-eryt 69.6 7.8 0.00017 32.9 4.3 30 63-92 1-34 (325)
427 TIGR02415 23BDH acetoin reduct 69.5 8.7 0.00019 28.6 4.1 31 64-94 3-34 (254)
428 PRK00045 hemA glutamyl-tRNA re 69.5 6.9 0.00015 33.5 4.0 37 60-96 181-218 (423)
429 smart00822 PKS_KR This enzymat 69.2 16 0.00035 24.6 5.0 32 64-95 3-36 (180)
430 KOG1399|consensus 69.2 9.6 0.00021 33.8 4.9 38 61-99 6-43 (448)
431 KOG0409|consensus 69.2 7.2 0.00016 34.1 4.0 38 60-97 34-71 (327)
432 PRK05249 soluble pyridine nucl 69.1 11 0.00023 31.7 5.0 35 57-91 1-35 (461)
433 TIGR03025 EPS_sugtrans exopoly 69.0 10 0.00022 32.1 4.8 33 62-94 126-161 (445)
434 PRK08339 short chain dehydroge 68.9 9 0.0002 29.6 4.2 33 63-95 10-43 (263)
435 PRK07588 hypothetical protein; 68.8 15 0.00032 29.9 5.6 34 62-95 1-34 (391)
436 cd01485 E1-1_like Ubiquitin ac 68.7 9.9 0.00021 29.4 4.4 30 61-90 19-49 (198)
437 COG1090 Predicted nucleoside-d 68.5 7.9 0.00017 33.4 4.1 38 65-102 2-40 (297)
438 PRK00955 hypothetical protein; 68.3 7.1 0.00015 36.3 4.0 44 40-97 11-55 (620)
439 PRK08020 ubiF 2-octaprenyl-3-m 68.2 11 0.00024 30.5 4.7 35 60-94 4-38 (391)
440 PRK06128 oxidoreductase; Provi 68.2 13 0.00028 29.2 5.0 33 62-94 56-89 (300)
441 KOG0399|consensus 68.2 10 0.00022 39.2 5.3 37 62-99 1786-1822(2142)
442 PRK03806 murD UDP-N-acetylmura 67.8 12 0.00026 31.4 5.0 33 62-94 7-39 (438)
443 PRK12831 putative oxidoreducta 67.7 12 0.00026 32.3 5.1 32 59-90 138-169 (464)
444 TIGR00507 aroE shikimate 5-deh 67.7 9.5 0.00021 30.3 4.2 35 61-95 117-151 (270)
445 PLN03096 glyceraldehyde-3-phos 67.6 11 0.00025 33.2 5.0 30 61-90 60-92 (395)
446 cd01336 MDH_cytoplasmic_cytoso 67.5 15 0.00033 30.6 5.6 35 61-95 2-44 (325)
447 PRK09754 phenylpropionate diox 67.3 15 0.00033 30.3 5.5 31 60-90 2-34 (396)
448 PRK12769 putative oxidoreducta 67.3 17 0.00036 32.7 6.1 37 60-97 326-362 (654)
449 PRK10537 voltage-gated potassi 67.2 10 0.00022 32.8 4.6 31 62-92 241-271 (393)
450 cd05313 NAD_bind_2_Glu_DH NAD( 67.1 13 0.00028 30.7 5.0 34 60-93 37-70 (254)
451 PLN02260 probable rhamnose bio 67.1 8.5 0.00018 34.2 4.2 29 60-88 379-408 (668)
452 PRK05868 hypothetical protein; 67.1 19 0.0004 29.8 5.9 35 62-96 2-36 (372)
453 PRK05872 short chain dehydroge 67.0 13 0.00027 29.4 4.7 34 62-95 10-44 (296)
454 PRK02705 murD UDP-N-acetylmura 67.0 11 0.00023 31.8 4.5 32 63-94 2-33 (459)
455 TIGR01235 pyruv_carbox pyruvat 67.0 11 0.00023 37.3 5.1 36 63-98 1-36 (1143)
456 PRK12935 acetoacetyl-CoA reduc 66.9 17 0.00037 27.0 5.2 32 62-93 7-39 (247)
457 PRK11749 dihydropyrimidine deh 66.9 12 0.00027 31.7 5.0 32 59-90 138-169 (457)
458 PRK05920 aromatic acid decarbo 66.9 15 0.00032 29.4 5.1 35 62-96 4-42 (204)
459 PLN02928 oxidoreductase family 66.9 12 0.00027 31.5 4.9 32 61-92 159-190 (347)
460 PRK00258 aroE shikimate 5-dehy 66.8 9.5 0.00021 30.6 4.1 36 62-97 124-160 (278)
461 TIGR01850 argC N-acetyl-gamma- 66.7 15 0.00031 30.9 5.3 32 62-93 1-34 (346)
462 PRK08589 short chain dehydroge 66.6 19 0.0004 27.8 5.5 32 62-93 7-39 (272)
463 PLN02383 aspartate semialdehyd 66.5 11 0.00024 32.0 4.6 28 59-86 5-33 (344)
464 PLN02780 ketoreductase/ oxidor 66.4 8 0.00017 31.4 3.6 35 62-96 54-89 (320)
465 PRK08416 7-alpha-hydroxysteroi 66.3 16 0.00034 27.8 5.0 30 62-91 9-39 (260)
466 PRK15469 ghrA bifunctional gly 66.2 20 0.00043 29.9 5.9 34 61-94 136-169 (312)
467 TIGR01133 murG undecaprenyldip 66.2 13 0.00028 28.9 4.6 33 62-95 1-38 (348)
468 PRK06126 hypothetical protein; 66.1 20 0.00043 31.0 6.1 38 58-95 4-41 (545)
469 PRK07041 short chain dehydroge 66.1 6.3 0.00014 29.0 2.7 29 68-96 5-33 (230)
470 PRK02472 murD UDP-N-acetylmura 66.0 18 0.00038 30.3 5.6 33 62-94 6-38 (447)
471 cd05293 LDH_1 A subgroup of L- 65.8 13 0.00029 30.9 4.9 37 61-97 3-41 (312)
472 TIGR01292 TRX_reduct thioredox 65.7 16 0.00034 27.8 4.8 33 62-94 142-174 (300)
473 PRK12771 putative glutamate sy 65.7 14 0.0003 32.5 5.2 31 60-90 136-166 (564)
474 PRK06444 prephenate dehydrogen 65.4 13 0.00029 29.3 4.6 27 62-88 1-28 (197)
475 TIGR01292 TRX_reduct thioredox 65.3 13 0.00028 28.2 4.4 29 63-91 2-30 (300)
476 PRK12767 carbamoyl phosphate s 65.2 11 0.00023 29.9 4.0 36 62-98 2-39 (326)
477 PRK04965 NADH:flavorubredoxin 65.0 16 0.00034 29.9 5.1 33 62-94 142-174 (377)
478 COG1087 GalE UDP-glucose 4-epi 65.0 12 0.00025 32.8 4.5 29 62-90 1-30 (329)
479 COG1618 Predicted nucleotide k 65.0 12 0.00025 30.4 4.2 38 60-97 4-46 (179)
480 PLN02985 squalene monooxygenas 65.0 25 0.00055 31.0 6.7 41 57-97 39-79 (514)
481 PRK11883 protoporphyrinogen ox 65.0 16 0.00035 29.8 5.1 36 62-98 1-38 (451)
482 PRK03562 glutathione-regulated 64.9 7.2 0.00016 35.3 3.4 37 61-97 400-436 (621)
483 PRK12747 short chain dehydroge 64.7 18 0.0004 27.1 5.0 31 62-92 5-36 (252)
484 TIGR01829 AcAcCoA_reduct aceto 64.4 17 0.00038 26.6 4.8 29 64-92 3-32 (242)
485 PRK13243 glyoxylate reductase; 64.2 16 0.00034 30.5 5.0 34 60-93 149-182 (333)
486 PF02670 DXP_reductoisom: 1-de 64.2 16 0.00034 27.5 4.5 32 64-95 1-35 (129)
487 PRK07364 2-octaprenyl-6-methox 64.2 23 0.0005 28.8 5.8 35 61-95 18-52 (415)
488 PLN02459 probable adenylate ki 64.1 5.6 0.00012 33.1 2.3 36 55-90 23-58 (261)
489 TIGR03013 EpsB_2 sugar transfe 64.1 15 0.00033 31.4 5.1 35 62-97 125-163 (442)
490 PRK00683 murD UDP-N-acetylmura 64.1 17 0.00037 30.6 5.2 34 62-95 4-37 (418)
491 TIGR02279 PaaC-3OHAcCoADH 3-hy 64.1 9.1 0.0002 34.0 3.8 35 62-96 6-40 (503)
492 PRK05294 carB carbamoyl phosph 64.0 24 0.00051 34.0 6.7 38 60-97 553-601 (1066)
493 PRK07831 short chain dehydroge 63.9 15 0.00033 27.8 4.5 34 62-95 18-53 (262)
494 PRK12809 putative oxidoreducta 63.9 21 0.00045 32.2 6.0 37 60-97 309-345 (639)
495 TIGR02853 spore_dpaA dipicolin 63.8 11 0.00023 31.0 3.9 36 61-96 151-186 (287)
496 PRK12475 thiamine/molybdopteri 63.7 15 0.00031 31.1 4.7 27 60-86 23-49 (338)
497 KOG0685|consensus 63.7 16 0.00036 33.5 5.3 38 62-99 22-59 (498)
498 PRK13535 erythrose 4-phosphate 63.5 13 0.00028 31.9 4.4 29 62-90 2-34 (336)
499 PRK07538 hypothetical protein; 63.5 25 0.00054 29.1 6.0 34 62-95 1-34 (413)
500 PRK12814 putative NADPH-depend 63.5 15 0.00032 33.3 5.0 31 60-90 192-222 (652)
No 1
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-12 Score=109.39 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=46.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCCC------Ccc----------eeeehhhhcc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRE------DIV----------DEMYSLWRVA 113 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g~------~~l----------~~~~~~~r~~ 113 (124)
|||+|||||+||+++|++|+++||||++|+||||||.+. ++| ++|+.++|..
T Consensus 2 mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~ 69 (307)
T COG0223 2 MRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDP 69 (307)
T ss_pred cEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcH
Confidence 899999999999999999999999999999999999876 333 7888888753
No 2
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=98.88 E-value=2.7e-09 Score=87.43 Aligned_cols=38 Identities=34% Similarity=0.556 Sum_probs=36.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|||+||||++||.++|++|+++||+|++|+|+||++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~ 38 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELREDNFEVVGVVTQPDKPAG 38 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCCCccC
Confidence 79999999999999999999999999999999999864
No 3
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.83 E-value=4.8e-09 Score=92.31 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=36.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|||+|||||+||+++|++|+++||+|++|+|+||+|.+
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~ 38 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAAGYEIAAVFTHTDNPGE 38 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcC
Confidence 79999999999999999999999999999999999864
No 4
>PRK06988 putative formyltransferase; Provisional
Probab=98.76 E-value=1.2e-08 Score=83.96 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=36.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|||+||||++||.++|++|++++++|++|+|+||+|.+
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~ 40 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTE 40 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 89999999999999999999999999999999999864
No 5
>PLN02285 methionyl-tRNA formyltransferase
Probab=98.74 E-value=1.5e-08 Score=84.43 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=36.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhC------CCeEEEEEcCCCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKN------GHSVVGVFTVVDKANR 99 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~------gheVvgVVTqPDKP~g 99 (124)
++|||+||||++||+++|++|+++ +++|++|+|+||++.+
T Consensus 5 ~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~g 50 (334)
T PLN02285 5 RKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRG 50 (334)
T ss_pred CccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCccc
Confidence 459999999999999999999973 6999999999999854
No 6
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=98.71 E-value=2.3e-08 Score=81.55 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=35.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|||+||||++||.++|++|++++|+|++|+|+||+|.+
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~ 38 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAG 38 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCC
Confidence 79999999999999999999889999999999999854
No 7
>KOG2452|consensus
Probab=98.62 E-value=4.3e-08 Score=89.20 Aligned_cols=55 Identities=53% Similarity=0.792 Sum_probs=51.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcc----------eeeehhhhcceee
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIV----------DEMYSLWRVALTA 116 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~l----------~~~~~~~r~~~~~ 116 (124)
|||+++|.+.||..+..+|.++||||++|+|-|||-.+.|+| |++|++||.|.++
T Consensus 1 mkiaiigqs~fg~~vy~~lrk~gheiv~vftipdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~ 65 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQA 65 (881)
T ss_pred CeeEEechhhhhHHHHHHHHhcCceEEEEEEecCCCCCcCcccccccccCcceechhhhhhhccc
Confidence 799999999999999999999999999999999998877776 9999999999875
No 8
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=97.89 E-value=2.6e-05 Score=58.99 Aligned_cols=38 Identities=34% Similarity=0.540 Sum_probs=34.5
Q ss_pred ceEEEE--cCCHHHHHHHHHHHhCCCe--EEEEEcCCCCCCC
Q psy16773 62 LRVAVI--GQSSFAAEVYKLLKKNGHS--VVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFm--GTp~FAa~iLeeLl~~ghe--VvgVVTqPDKP~g 99 (124)
|||+|| |++.++..+|++|.+++++ |++|+|++|++.+
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~ 42 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRG 42 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 899999 8899999999999988875 9999999999863
No 9
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.60 E-value=8.7e-05 Score=60.48 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=37.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIV 103 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~l 103 (124)
|||+++|. |..|..+++|+.++||||+||+++|.|-...+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~ 43 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGV 43 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccc
Confidence 79999998 9999999999999999999999999988654443
No 10
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.59 E-value=0.0042 Score=44.59 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.0
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|+++|. |.+|..++++|+++||+|.++++++.+...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 678895 999999999999999999999999886543
No 11
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.00 E-value=0.012 Score=45.06 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=32.5
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+|||+++|. |.+|..++++|+++||+|+++...+++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~ 53 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDK 53 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 479999995 999999999999999999999988775
No 12
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.92 E-value=0.0094 Score=47.02 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=35.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
|+|+++|.|.||..+.+.|.++||+|+.|...+++-..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHH
Confidence 78999999999999999999999999999999987543
No 13
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.87 E-value=0.02 Score=41.84 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=31.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.++|++.|. +.+|..+.+.|+++||+|+++.+.+++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~ 41 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEA 41 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhH
Confidence 4468999997 999999999999999999888877654
No 14
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=95.67 E-value=0.012 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
-||.++|.|++|+.+++++.+.|++.++|.++||+..
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s 39 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVS 39 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTG
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhccc
Confidence 4799999999999999999999999999999999864
No 15
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.65 E-value=0.019 Score=45.67 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||++.|. |.+|..++++|+++||+|.++..++++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH
Confidence 68999995 999999999999999999999988654
No 16
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.55 E-value=0.044 Score=39.30 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=32.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHh-CCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKK-NGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~-~gheVvgVVTqPDKP 97 (124)
|||++.|. |..|..+.+.+.+ .+++++|++...+.+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~ 38 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA 38 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc
Confidence 79999999 9999999999998 579999999988743
No 17
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.51 E-value=0.04 Score=45.43 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=35.6
Q ss_pred ccCCCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 55 SQIHKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 55 ~~M~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..|..++|||++.|. |.+|..+.+.|+++||+|.++...++
T Consensus 15 ~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~ 56 (370)
T PLN02695 15 PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN 56 (370)
T ss_pred CCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc
Confidence 347778899999997 99999999999999999999986543
No 18
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.34 E-value=0.022 Score=37.71 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=29.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC---CeEEEE-EcCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNG---HSVVGV-FTVVDKA 97 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~g---heVvgV-VTqPDKP 97 (124)
||+|+|+|..|..+++.|++.| ++|.-+ -.+|++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~ 39 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKA 39 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHH
Confidence 7999999999999999999998 899865 5566543
No 19
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.18 E-value=0.052 Score=43.87 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|++.+|||+++|.|.+|.-.--.|.+.||+|..+...+.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 456679999999999999988888888999998887653
No 20
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.033 Score=41.67 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANRED 101 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~ 101 (124)
|+|++.|. |.+|..++++|+++||+|.++..+|++.....
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~ 41 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA 41 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc
Confidence 56777776 99999999999999999999999998775433
No 21
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.88 E-value=0.047 Score=42.07 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||.|+| +|.+|..+...|.++||+|..+-..++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 7899997 899999999999999999986655553
No 22
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.88 E-value=0.041 Score=42.34 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=28.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||.++|.|-+|.+.-..|.+.||+|+|+=.++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v 36 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKV 36 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHH
Confidence 899999999999999999999999999999988855
No 23
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.80 E-value=0.059 Score=41.67 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=31.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
+|++.|. |.+|..++++|+++||+|.++.++|++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~ 37 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA 37 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc
Confidence 4777777 99999999999999999999999998654
No 24
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.71 E-value=0.08 Score=41.17 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=31.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++|++.|. |.+|..+.+.|+++||+|+++...+++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~ 40 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPND 40 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 378999995 999999999999999999999887654
No 25
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.59 E-value=0.053 Score=43.88 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=31.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.|||.|+|.|.+|..+...|.++||+|..+-+.+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~ 39 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEF 39 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 389999999999999999999999999887776553
No 26
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.088 Score=40.16 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=32.1
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
|+|.+.| ||-+|..+.+.|+++||+|.++-+.+++..
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcccc
Confidence 4589999 699999999999999999999998776543
No 27
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.42 E-value=0.086 Score=39.03 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=32.3
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.++|++.|. +.+|..+.+.|+++|++|+++.+.+++
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4468999997 999999999999999999999888764
No 28
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.37 E-value=0.1 Score=43.76 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
..|||++.|. |.+|..+.++|+++||+|+++...+++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI 97 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence 3479999997 9999999999999999999998877543
No 29
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.33 E-value=0.034 Score=41.21 Aligned_cols=35 Identities=29% Similarity=0.626 Sum_probs=29.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+|||.|+|.|..|...-..|.+.||+|++|+..-
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 35999999999999999999988999999998754
No 30
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.30 E-value=0.08 Score=41.29 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||.++|+|.+|..+-..|.+.||+|..+...+++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~ 35 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAH 35 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHH
Confidence 68999999999999988888889999988875543
No 31
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.24 E-value=0.14 Score=37.54 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 58 HKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 58 ~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+.++|++.|. +.+|..+.+.|+++|++|+.+..+++
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~ 40 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE 40 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch
Confidence 344568999987 99999999999999999977777665
No 32
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.20 E-value=0.098 Score=40.29 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|+|++.|. |.+|..+.++|+++||+|+++...+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 57999986 999999999999999999999987765
No 33
>PLN02240 UDP-glucose 4-epimerase
Probab=94.20 E-value=0.14 Score=40.41 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 57 IHKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 57 M~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|+...+||++.|. |.+|..+.+.|+++||+|+++...
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4455678999986 999999999999999999988643
No 34
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=94.16 E-value=0.12 Score=34.96 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=27.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN--GHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~--gheVvgVVTq 93 (124)
|||+++|.|.+|...++.+.+. +.+|+||+..
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~ 34 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP 34 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 6899999999999999998875 4688888654
No 35
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.15 E-value=0.058 Score=44.64 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHh------CCCeEEEEEc-CCC
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKK------NGHSVVGVFT-VVD 95 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~------~gheVvgVVT-qPD 95 (124)
.++|||+||||+. -..|++|++ .+++|++|++ +||
T Consensus 87 ~~~~ri~vl~Sg~--g~nl~al~~~~~~~~~~~~i~~visn~~~ 128 (286)
T PRK13011 87 AARPKVLIMVSKF--DHCLNDLLYRWRIGELPMDIVGVVSNHPD 128 (286)
T ss_pred ccCceEEEEEcCC--cccHHHHHHHHHcCCCCcEEEEEEECCcc
Confidence 3468999999984 567777773 2589999999 554
No 36
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=94.15 E-value=0.16 Score=41.60 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
++.++|||+++|++..+...++++.+.||+|+.+-..|+.|.
T Consensus 8 ~~~~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~ 49 (395)
T PRK09288 8 LSPSATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPA 49 (395)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 344668999999999999999998888999999988887653
No 37
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.11 E-value=0.066 Score=39.47 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||.|+|.|..|.++.+.|+++||+|.+-=..+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~ 36 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEK 36 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhh
Confidence 89999999999999999999999999765545443
No 38
>PRK08462 biotin carboxylase; Validated
Probab=94.05 E-value=0.12 Score=43.64 Aligned_cols=36 Identities=14% Similarity=0.413 Sum_probs=33.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
-||.++|.|++++++++++.+.|+++++|.+.+|+.
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~ 40 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKD 40 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcC
Confidence 489999999999999999999999999999999974
No 39
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.03 E-value=0.094 Score=38.75 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=31.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+|++.|. +.+|..+.+.|+++|++|+++.+.|++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKE 42 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHH
Confidence 467888986 999999999999999999999887754
No 40
>PLN02650 dihydroflavonol-4-reductase
Probab=93.97 E-value=0.14 Score=40.97 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=32.6
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.+++|++.|. |.+|..+.++|+++||+|+++...+++
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~ 41 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPAN 41 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcch
Confidence 34578999997 999999999999999999998877654
No 41
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.94 E-value=0.082 Score=41.73 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||+|+|.|..|..+...|.+.||+|..+-+.++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 7999999999999999999999999977766554
No 42
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=93.87 E-value=0.13 Score=44.14 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 57 IHKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 57 M~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
...+.|||++.|. |.+|..+.++|+++||+|+++-.
T Consensus 116 ~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 116 IGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4556699999997 99999999999999999999864
No 43
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.86 E-value=0.087 Score=45.00 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.|||+|+|.|.+|.+.-..|.++||+|+++=..+++..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 48999999999999999999999999999988877653
No 44
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=93.81 E-value=0.15 Score=39.97 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=27.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
|||++.|. |.+|..+.+.|+++||+|+++-.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEec
Confidence 68999995 99999999999999999998743
No 45
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=93.79 E-value=0.17 Score=43.61 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=33.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.||.++|.|++|.++++++.+.|++++++.+.+|+-
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~ 41 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAACSDADRD 41 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 589999999999999999999999999999988753
No 46
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=93.73 E-value=0.19 Score=36.27 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=28.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+++++|++.+|..+++.|.+.|++++|.+...
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~ 32 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDN 32 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 47899999999999999988899999999764
No 47
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.64 E-value=0.12 Score=41.12 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=27.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC----CeEEEEEc
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG----HSVVGVFT 92 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g----heVvgVVT 92 (124)
..|||.|+|.|.+|..+...|+++| ++|...-.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 3489999999999999999999887 66655433
No 48
>KOG1502|consensus
Probab=93.63 E-value=0.15 Score=43.84 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
..++|.+-|. |-+|..+++.|+++||.|.|.++.|.++.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~ 45 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK 45 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh
Confidence 4578999998 999999999999999999999999997533
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=93.45 E-value=0.17 Score=43.20 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=31.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
+++||+++|+|.+|..+++.+.++ +.|++||++..|
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 359999999999999999888765 689999998875
No 50
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.44 E-value=0.12 Score=40.57 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVT 92 (124)
|||+++|.|.+|..+-..|.++||+|..+..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999988999988876
No 51
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.27 E-value=0.24 Score=39.31 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=31.5
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+++|++.|. |.+|..+.++|+++||+|+++...+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 478999995 999999999999999999998887654
No 52
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.21 E-value=0.11 Score=43.78 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=32.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||.|+|.|.+|.+.-..|.++||+|+++-..+++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v 36 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKV 36 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 689999999999999999999999999987776654
No 53
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.19 E-value=0.11 Score=40.32 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC----eEEEE
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH----SVVGV 90 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh----eVvgV 90 (124)
|||.|+|.|.+|..+.+.|+++|| +|...
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 789999999999999999999887 66544
No 54
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.17 E-value=0.11 Score=41.39 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||.|+|.|.+|..+...|.++||+|.++-..+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~ 35 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRREST 35 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 68999999999999999999889999998876653
No 55
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.15 E-value=0.28 Score=38.53 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..++|++.|. |.+|..+.+.|+++||+|+++...+++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~ 41 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKD 41 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 3478999996 999999999999999999988777654
No 56
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.05 E-value=0.24 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=28.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++|++.|. +.+|..+.+.|+++||+|+.+....+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 57999986 99999999999999999877666554
No 57
>PLN02427 UDP-apiose/xylose synthase
Probab=92.99 E-value=0.21 Score=40.77 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
++|||++.|. |.+|..+++.|+++ ||+|+++...++
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND 50 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch
Confidence 4589999996 99999999999988 599999876543
No 58
>PLN00016 RNA-binding protein; Provisional
Probab=92.95 E-value=0.17 Score=41.48 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=32.0
Q ss_pred CCceEEEE----c-CCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVI----G-QSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFm----G-Tp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++||++. | ||.+|..+.++|+++||+|.++...+.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 6 5999999999999999999999987653
No 59
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.91 E-value=0.13 Score=42.63 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||+++|.|.+|..+.+.|.++|++|+.|-..+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~ 35 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEER 35 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 68999999999999999999889999977666664
No 60
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.66 E-value=0.27 Score=39.70 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=29.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+|||.|+|+|.+|..+-..|.++||+|...-+.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4899999999999999999999999997665543
No 61
>PLN02583 cinnamoyl-CoA reductase
Probab=92.66 E-value=0.33 Score=38.36 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=29.5
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+.+|++.|. |.+|..+.++|+++||+|++++..+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~ 40 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKN 40 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCc
Confidence 357888886 9999999999999999999998754
No 62
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.64 E-value=0.25 Score=39.66 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..|||++.|. |.+|..+.++|+++|++|+++...++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA 45 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 3489999996 99999999999999999999877654
No 63
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.64 E-value=0.3 Score=39.43 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=30.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+.|||++.|. |-+|..+.++|+++|++|+++...+
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4589999996 9999999999999999999997644
No 64
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=92.60 E-value=0.4 Score=37.72 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.4
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++|++.|. |.+|..+.++|+++||+|++++..+.+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 41 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD 41 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence 468999996 999999999999999999998887653
No 65
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.59 E-value=0.45 Score=30.91 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
||+++|.|..|.++...|.+.|.+|.-+...+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999976555543
No 66
>PLN02214 cinnamoyl-CoA reductase
Probab=92.52 E-value=0.29 Score=39.61 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=32.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++|++.|. |.+|..+.++|+++||+|+++...+++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 367999997 999999999999999999999887764
No 67
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.52 E-value=0.22 Score=36.72 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=30.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++|++.|. +.+|..+.+.|+++|++|+++.+.++
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD 41 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57999996 99999999999999999999888754
No 68
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.43 E-value=0.21 Score=37.76 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=30.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|+|++.|. +.+|..+.+.|+++|++|+++.+.+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~ 36 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 67888886 999999999999999999998887653
No 69
>PRK08264 short chain dehydrogenase; Validated
Probab=92.41 E-value=0.35 Score=35.87 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.2
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGH-SVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gh-eVvgVVTqPDKP 97 (124)
...+|++.|. +.+|..+.+.|+++|+ +|+.+.+.+++.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~ 44 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV 44 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhh
Confidence 4467899985 9999999999999998 999888877654
No 70
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.27 E-value=0.36 Score=35.24 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+|++.|. +.+|..+.+.|+++|++|+++.+++++
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence 457888987 999999999999999999999887654
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.19 E-value=0.14 Score=42.28 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHH---hC---CCeEEEEEcCCCCC
Q psy16773 58 HKCDLRVAVIGQSSFAAEVYKLLK---KN---GHSVVGVFTVVDKA 97 (124)
Q Consensus 58 ~~k~MKIVFmGTp~FAa~iLeeLl---~~---gheVvgVVTqPDKP 97 (124)
..++|||++++||. -..|++|+ ++ +++|++|+|+++..
T Consensus 86 ~~~~~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~~~~ 129 (286)
T PRK06027 86 SAERKRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNHDDL 129 (286)
T ss_pred cccCcEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcChhH
Confidence 34568999999987 45667777 44 47999999998744
No 72
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=92.18 E-value=0.32 Score=41.91 Aligned_cols=36 Identities=11% Similarity=0.327 Sum_probs=33.9
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
||.++|.|++|.++++++.+.|+++++|.+.+|.+.
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a 39 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHA 39 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 799999999999999999999999999999999764
No 73
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.15 E-value=0.19 Score=40.48 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|||.|+|.|..|.++.+.|++.||+|...-..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~ 32 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRN 32 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECC
Confidence 68999999999999999999999998665333
No 74
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.09 E-value=0.29 Score=39.37 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=29.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|||.|+|.|.+|..+-..|.++||+|..+-..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 89999999999999999999999999987654
No 75
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=92.06 E-value=0.36 Score=41.78 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||.++|.|++|.++++++.+.|+++++|.+.||.+.
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~ 39 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDREC 39 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCC
Confidence 5899999999999999999999999999999998753
No 76
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.03 E-value=0.33 Score=36.54 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=29.4
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|+++|. |.+|..+++.|++.+|+|.+++..+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~ 34 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS 34 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 677885 999999999999999999999998854
No 77
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.97 E-value=0.2 Score=40.45 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=29.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||.|+|.|.+|..+...|.++||+|.+.=..++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 6899999999999999999999999987655544
No 78
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.92 E-value=0.3 Score=36.41 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCc-eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDL-RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~M-KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+| ++++.|. +.+|..+.++|+++|++|+.+..++++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~ 42 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDA 42 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 334 5677776 999999999999999999988776653
No 79
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=91.87 E-value=0.35 Score=39.15 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=29.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHh--CCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKK--NGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~--~gheVvgVVTq 93 (124)
++|||+++|.|.+|..+.+.|.+ .++++++|...
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 45999999999999999999876 36899888764
No 80
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.82 E-value=0.31 Score=36.99 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+..+|++.|. +.+|..+.+.|+++|++|+++...++
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~ 40 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAE 40 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 34457888886 99999999999999999998887654
No 81
>PLN02206 UDP-glucuronate decarboxylase
Probab=91.73 E-value=0.47 Score=40.84 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 57 IHKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 57 M~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+..+.|||++.|. |.+|..+.++|+++||+|+++...
T Consensus 115 ~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 115 LKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred cccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 4445699999996 999999999999999999988543
No 82
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.71 E-value=0.28 Score=40.65 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=32.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+++|+++|.|.+|..+.+.|.+.|++|+.|-..|++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 478999999999999999998889999999888775
No 83
>PRK07023 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.4 Score=35.87 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|+|++.|. +.+|..+.+.|+++|++|+.+.+++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~ 37 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP 37 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch
Confidence 68899888 999999999999999999998876653
No 84
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.66 E-value=0.33 Score=39.52 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||.|+|.|..|.+....|++.||+|...-..|
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~ 33 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGP 33 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999987544433
No 85
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.63 E-value=0.59 Score=35.51 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=33.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANREDI 102 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~ 102 (124)
.+|++.|. +.+|..+.++|.++|++|+++...+++....++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 46 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPG 46 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCC
Confidence 46888886 999999999999999999999988776544333
No 86
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=91.58 E-value=0.35 Score=36.59 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.3
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|++.|. |.+|..+.++|+++||+|.++.+.+++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 35 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAG 35 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 356665 9999999999999999999999988764
No 87
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.56 E-value=0.37 Score=35.80 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+..+|++.|. +.+|..+.+.|+++|++|+++.++++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~ 40 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAE 40 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHH
Confidence 3457888888 99999999999999999998887765
No 88
>PRK06180 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.38 Score=37.15 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=30.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.+.|+++|++|+++.+++++
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~ 40 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAA 40 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHH
Confidence 56888887 999999999999999999999887764
No 89
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.38 E-value=0.39 Score=36.59 Aligned_cols=38 Identities=29% Similarity=0.115 Sum_probs=31.8
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++..+|++.|. +.+|..+.+.|+++|++|+++..++++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~ 43 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDK 43 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 34578999997 899999999999999999988776543
No 90
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.26 E-value=0.28 Score=33.21 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.6
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 64 VAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 64 IVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|+++|.+.+|..+++.|.+.+.+|+.|-..|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~ 34 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERV 34 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHH
Confidence 6889999999999999999666899998888653
No 91
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.02 E-value=0.39 Score=36.70 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.4
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
||++.|. |.+|..+.++|+++||+|.++.+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 5788885 999999999999999999988764
No 92
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.97 E-value=0.69 Score=35.35 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG 84 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g 84 (124)
+.|||+|+|+|.+|..+...|++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~ 27 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTS 27 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC
Confidence 4689999999999999999998776
No 93
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=90.91 E-value=0.47 Score=39.91 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=33.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||.++|.|+.|.++++++.+.|++++++.+.+|.+.
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a 39 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELGIKTVAVHSTADRDA 39 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccC
Confidence 5899999999999999999999999999999888643
No 94
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.83 E-value=0.38 Score=38.82 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||.++|.|.+|..+-..|.++||+|..+-+.+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 689999999999999998988899998666544
No 95
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.81 E-value=0.45 Score=36.31 Aligned_cols=37 Identities=16% Similarity=-0.033 Sum_probs=31.0
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.++|++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~ 41 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEAL 41 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3467888987 999999999999999999888776654
No 96
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.81 E-value=0.67 Score=34.83 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
+..||+++|.|.+|..-++.|++.|++|+-|
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 3478999999999999999999999999855
No 97
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.67 E-value=0.34 Score=39.11 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||.|+|.|.+|.+..+.|+++||+|+..=..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~ 33 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ 33 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 689999999999999999999999987543333
No 98
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.64 E-value=0.69 Score=37.10 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=30.4
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+||++.|. |.+|..+.+.|+++||+|+++...++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 378999996 99999999999999999998876554
No 99
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.63 E-value=0.56 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.+++++.|. +.+|..+.+.|.++|++|+.+.+.+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~ 44 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA 44 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3468899997 89999999999999999988876653
No 100
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=90.60 E-value=0.56 Score=39.26 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=33.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||.++|.|..|.++++++.+.|++++++.+.+|.+.
T Consensus 3 ~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a 39 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDA 39 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccC
Confidence 5899999999999999999999999999998877654
No 101
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.60 E-value=0.47 Score=37.93 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
|||++.|. |.+|..+.++|+++ ||+|+++...++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~ 37 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD 37 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH
Confidence 78999996 99999999999986 699999976543
No 102
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=90.56 E-value=0.75 Score=33.59 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.7
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|+++|. |-+|..+.++|+++||+|+++.+.++..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~ 35 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSE 35 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGG
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccc
Confidence 577885 9999999999999999999777766644
No 103
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.54 E-value=0.72 Score=32.46 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=29.1
Q ss_pred eEEEEc-CCHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 63 RVAVIG-QSSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmG-Tp~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
||+++| ||..|..+++.|.++ .++++.++...+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 799999 899999999998875 469999998887
No 104
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=90.48 E-value=0.61 Score=37.97 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=32.8
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
||.++|++..|..+.+++.+.|++|+++-.+|+.|.
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~ 36 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPA 36 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCch
Confidence 689999999999999999999999999999888664
No 105
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.43 E-value=0.43 Score=40.07 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=33.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||+|+|.|..|.+.-..|+++||+|..--..|+|+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka 36 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKA 36 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhh
Confidence 589999999999999999999999999988888874
No 106
>PRK06182 short chain dehydrogenase; Validated
Probab=90.41 E-value=0.5 Score=36.21 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++||+|+++..++++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK 39 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 57888886 999999999999999999999887764
No 107
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.37 E-value=0.62 Score=34.63 Aligned_cols=35 Identities=26% Similarity=0.150 Sum_probs=30.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.+.|+++|++|+++.+.+++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~ 40 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEA 40 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 57889985 999999999999999999999887664
No 108
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.36 E-value=0.46 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.++|+++|++|+++...+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~ 37 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVER 37 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 57888886 999999999999999999999877653
No 109
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.24 E-value=0.64 Score=39.34 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVTq 93 (124)
+++||+++|+|.+|...+..+.+. +.++++|+-.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi 37 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI 37 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 569999999999999988888864 5799998854
No 110
>PRK05586 biotin carboxylase; Validated
Probab=90.15 E-value=0.44 Score=40.49 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=32.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.||.++|.|+.|.++++++.+.|+++++|.+.+|..
T Consensus 3 kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~ 38 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREMGIETVAVYSEADKD 38 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhcc
Confidence 489999999999999999999999999999887764
No 111
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=90.11 E-value=1.7 Score=37.50 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=46.7
Q ss_pred eeeccccCceeEEecCCCCccCCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 36 VRTICHPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 36 ~~~~c~~~~~~~~~~~s~~~~M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+...|+..+....+..+.++ |+..++.|+++|.|.-|..+-..|.++|++|+-+=.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~ 74 (450)
T PLN00093 15 AAKSVSRPGLRVLAAAASKK-LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDN 74 (450)
T ss_pred cccccccccceeeecCCCCC-cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 34567777777776665555 7777899999999999998888888889998877666543
No 112
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.09 E-value=0.68 Score=34.62 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.++|++.|. +.+|..+.+.|+++||+|+.+...++
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~ 46 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEA 46 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4478999998 99999999999999999988887653
No 113
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.08 E-value=0.4 Score=38.00 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=28.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||.|+|.|..|..+.+.|.+.||+|.+.-.++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 789999999999999999999999987654433
No 114
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.99 E-value=0.72 Score=34.65 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=32.2
Q ss_pred CCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 58 HKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 58 ~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
....++|++.|. +.+|..+.+.|+++|++|+.+...+++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~ 47 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAAT 47 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 334467888888 999999999999999999999887653
No 115
>PRK12939 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.68 Score=34.24 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++|++.|. +.+|..+.+.|+++|++|+++-..++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467889987 99999999999999999988866555
No 116
>PRK05884 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.45 Score=35.96 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=30.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
||+++.|. +.+|..+.+.|.++|++|+.+..++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~ 36 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDD 36 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 57888886 999999999999999999998777654
No 117
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.88 E-value=0.58 Score=37.44 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+||.|+|.|.+|..+...|.+.||+|+++-..++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5899999999999999999998999988865543
No 118
>PRK12827 short chain dehydrogenase; Provisional
Probab=89.80 E-value=0.9 Score=33.47 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.|+|++.|. +.+|..+.++|+++||+|+.+...
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence 478999997 999999999999999999887653
No 119
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=89.80 E-value=0.59 Score=39.67 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=32.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
||.++|.|+.|.++++++.+.|++++++.+.+|..
T Consensus 4 kili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~ 38 (449)
T TIGR00514 4 KILIANRGEIALRILRACKELGIKTVAVHSTADRD 38 (449)
T ss_pred eEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhc
Confidence 89999999999999999999999999998877744
No 120
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=89.68 E-value=0.67 Score=40.49 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=33.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFTVVDKANRE 100 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVTqPDKP~g~ 100 (124)
.|+++..|+|.+|...+++|+++ +.|++|++-..+.+.+.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gk 42 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGK 42 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccc
Confidence 38899999999999999999976 89999988777655443
No 121
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.67 E-value=0.55 Score=38.18 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=30.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+|||+++|.|.+|..+--.|.+.|++|..|...++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~ 36 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQ 36 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechH
Confidence 48999999999999888888888999999988653
No 122
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.60 E-value=1 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=27.8
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
+..+|++.|. +.+|..+.+.|+++|++|+.+..
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 3467889986 99999999999999999987654
No 123
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=0.6 Score=37.18 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||+|+|.|.+|..+-..|+.+||+|+.+-..+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 39 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADR 39 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 68999999999999999999999999988766543
No 124
>PLN02256 arogenate dehydrogenase
Probab=89.51 E-value=0.9 Score=37.63 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=29.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
++|||+|+|.|.+|..+...|.+.|++|.++-..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 4589999999999999999998888999876544
No 125
>PRK09186 flagellin modification protein A; Provisional
Probab=89.47 E-value=0.88 Score=33.98 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=30.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++|++.|. +.+|..+.+.|+++|++|+++..++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~ 40 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEA 40 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHH
Confidence 367888887 899999999999999999998777654
No 126
>PRK04148 hypothetical protein; Provisional
Probab=89.47 E-value=0.51 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+.+||+.+|.| ||..+.+.|.+.||+|+||=..|+..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV 52 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAV 52 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHH
Confidence 34889999999 88877788888899999999888843
No 127
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=89.40 E-value=0.8 Score=34.86 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=29.4
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+..++++.|. +.+|..+.+.|+++|++|+.+-...+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 40 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA 40 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456788887 89999999999999999988766543
No 128
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.34 E-value=0.91 Score=38.72 Aligned_cols=48 Identities=25% Similarity=0.192 Sum_probs=35.3
Q ss_pred eEEecCCCCccCCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 46 VFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 46 ~~~~~~s~~~~M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++++++..-+.+ +.++|+|+|.|..|..+.+.|.+.|++|+.....+.
T Consensus 4 ~~~~~d~~~~~L--~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~ 51 (330)
T PRK05479 4 VYYDKDADLSLI--KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGS 51 (330)
T ss_pred eeccCCCChhhh--CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCch
Confidence 455555433333 347899999999999999999999999876555433
No 129
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.33 E-value=0.84 Score=36.71 Aligned_cols=33 Identities=30% Similarity=0.386 Sum_probs=28.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVTqP 94 (124)
|||+++|.|.+|..+++.|.+. +.++++|+..+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~ 35 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE 35 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC
Confidence 8999999999999999998765 58999998543
No 130
>PRK06914 short chain dehydrogenase; Provisional
Probab=89.31 E-value=0.82 Score=34.93 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=29.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.|++.|. +.+|..+.+.|+++||+|+++.+.+++
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~ 39 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEK 39 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4677775 999999999999999999999887764
No 131
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=89.30 E-value=0.79 Score=40.37 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=33.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||.++|.|++|.++++++.+.|+++++|++.+|...
T Consensus 3 ~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a 39 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNA 39 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence 4799999999999999999999999999999998643
No 132
>PRK08017 oxidoreductase; Provisional
Probab=89.26 E-value=0.72 Score=34.44 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+|++.|. +.+|..+.+.|+++|++|+++...+++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~ 39 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV 39 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh
Confidence 5888987 9999999999999999999888777654
No 133
>PRK06849 hypothetical protein; Provisional
Probab=89.25 E-value=1 Score=37.28 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=32.5
Q ss_pred CCceEEEEcCCH-HHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSS-FAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~-FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
++|||++.|.+. .|..+.+.|.+.||+|+++-+.++.+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 469999999954 79999999999999999998887643
No 134
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=89.21 E-value=0.98 Score=36.44 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.7
Q ss_pred ceEEEEc-CCHHHHHHHHHHHh-CCCeEEEEEcCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKK-NGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~-~gheVvgVVTqPD 95 (124)
|||+++| +|.+|..+++.+.+ .++++++++-.++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~ 37 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHG 37 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 7999999 79999999999886 4799999987554
No 135
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.14 E-value=0.91 Score=37.89 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+..+|+++|.|.+|..+.+.|.++||+|+++-..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999999999999999999999999887544
No 136
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.12 E-value=1.1 Score=33.49 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=29.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.++|+++||+|+++..+.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKA 41 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCch
Confidence 57888896 99999999999999999998876554
No 137
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.99 E-value=0.87 Score=33.50 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=28.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEE-EcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGV-FTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgV-VTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+ .+.++
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~ 41 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEE 41 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 47899987 999999999999999999888 44443
No 138
>PRK07577 short chain dehydrogenase; Provisional
Probab=88.96 E-value=1.3 Score=32.60 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.++|+++|++|+++...+++
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~ 39 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID 39 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 56788887 999999999999999999999887765
No 139
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.96 E-value=0.61 Score=37.69 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=28.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+||.|+|.|.+|......|++.||+|...=..++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~ 35 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQ 35 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4899999999999999999999999876644444
No 140
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.89 E-value=0.65 Score=35.28 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=29.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|++++.|. +.+|..+.+.|.++|++|+.+-.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~ 35 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEE 35 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 67899997 99999999999999999988876654
No 141
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=88.88 E-value=0.57 Score=39.42 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHh-CCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKK-NGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~-~gheVvgVVTqPD 95 (124)
|||+.+|.|.||.-.+..++. .|++|++|-..+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~ 35 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQE 35 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHH
Confidence 789999999999988877775 5799999976443
No 142
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.85 E-value=0.55 Score=36.58 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC---CeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG---HSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g---heVvgVVTqP 94 (124)
|||.|+|.|.+|..+...|.++| ++|..+-.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence 79999999999999999998877 5665554444
No 143
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.79 E-value=0.61 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=26.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgV 90 (124)
|||.++|. |.+|..+.+.|.++|++|+++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 89999995 999999999998888999988
No 144
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=88.74 E-value=1.4 Score=35.15 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCcc
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIV 103 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~l 103 (124)
+.+||++.|.|.+|..+.+.|.+.|..|++|.-..--...++++
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gl 73 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGL 73 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCC
Confidence 45899999999999999999999999999997654333344444
No 145
>PLN02778 3,5-epimerase/4-reductase
Probab=88.72 E-value=0.96 Score=36.23 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=27.1
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEE
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgV 90 (124)
.+|||++.|. |.+|..+.+.|+++||+|+..
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3489999997 999999999999999998753
No 146
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.72 E-value=1.1 Score=37.33 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=29.0
Q ss_pred CceEEEEc-CCHHHHHHHHHHHhCC-CeEEEEEcCCC
Q psy16773 61 DLRVAVIG-QSSFAAEVYKLLKKNG-HSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmG-Tp~FAa~iLeeLl~~g-heVvgVVTqPD 95 (124)
++||+++| ||.+|..+++.|.++. .+++++++.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~ 39 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASER 39 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChh
Confidence 48999998 6999999999888754 49999966654
No 147
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.58 E-value=0.61 Score=37.70 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=30.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||+|+|.|.+|..+-..|.++||+|+++-..++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 6899999999999999999999999998876654
No 148
>PRK09134 short chain dehydrogenase; Provisional
Probab=88.58 E-value=1.5 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
..+++++.|. +.+|..+.+.|.++|++|+.+..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467888888 999999999999999999877654
No 149
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.57 E-value=0.49 Score=37.59 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=28.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
||.|+|.|..|..+.+.|.+.||+|.++=.+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 589999999999999999999999987655543
No 150
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.49 E-value=1 Score=35.93 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=29.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+|++.|. |-+|..+.++|+++||+|+++...++
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~ 35 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGLIRRSS 35 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCc
Confidence 6788886 99999999999999999999887664
No 151
>PRK12320 hypothetical protein; Provisional
Probab=88.44 E-value=0.83 Score=42.60 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=30.4
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||++.| +|.+|..+.++|+++||+|+++...+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 6899999 599999999999999999999887654
No 152
>PRK06172 short chain dehydrogenase; Provisional
Probab=88.38 E-value=0.99 Score=33.85 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=30.8
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+|++.|. +.+|..+.+.|+++|++|+.+.+.+++
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG 43 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 357888887 999999999999999999998877653
No 153
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.35 E-value=0.63 Score=36.88 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC--eEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH--SVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh--eVvgVVTqP 94 (124)
|||+|+|.|.+|..+...|.+.|+ +|.++-..+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~ 35 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNE 35 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 689999999999999999998885 666654433
No 154
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.33 E-value=0.7 Score=36.18 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEE
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVV 88 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVv 88 (124)
|||.|+|.|.+|..+.+.|++.|+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~ 27 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVS 27 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChh
Confidence 689999999999999999998887653
No 155
>PRK09135 pteridine reductase; Provisional
Probab=88.30 E-value=1.3 Score=32.54 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
..+|++.|. +.+|..+.+.|+++|++|+++...
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 367888997 999999999999999999998865
No 156
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.30 E-value=1.4 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
..+|++.|. +.+|..+.++|+++|++|+++...+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 357888887 8999999999999999998887643
No 157
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.28 E-value=0.53 Score=40.25 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=30.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||.++|.|-.|.++-..+ ..||+|+++=..+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~G~~VigvD~d~~kv 35 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQNHEVVALDILPSRV 35 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCcEEEEECCHHHH
Confidence 6899999999999988544 4599999999998876
No 158
>PLN02686 cinnamoyl-CoA reductase
Probab=88.25 E-value=0.89 Score=37.49 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.++|++.|. |.+|..+.+.|+++||+|++++..++
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~ 88 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQE 88 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3468999987 99999999999999999998876543
No 159
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.25 E-value=0.89 Score=34.01 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..++|++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3467888887 99999999999999999988876654
No 160
>PRK05866 short chain dehydrogenase; Provisional
Probab=88.23 E-value=1.1 Score=35.51 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 57 IHKCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 57 M~~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|..+..+|++.|. +.+|..+.++|+++|++|+.+..++++
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~ 76 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDL 76 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3444467888887 999999999999999999998877653
No 161
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.22 E-value=1.1 Score=35.57 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=30.5
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++|++.|. |.+|..+.++|+++|++|+++...++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~ 41 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSS 41 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccc
Confidence 478999996 99999999999999999999876654
No 162
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.12 E-value=1.2 Score=33.31 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=29.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|+++|++|+.+...++
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQD 42 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH
Confidence 56888888 99999999999999999998877664
No 163
>PRK08219 short chain dehydrogenase; Provisional
Probab=88.11 E-value=0.75 Score=33.51 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=29.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.++|+++ |+|+++..++++
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~ 38 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-HTLLLGGRPAER 38 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHH
Confidence 57888887 99999999999998 999999877643
No 164
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.11 E-value=1.6 Score=32.28 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-..++.
T Consensus 6 k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~ 41 (235)
T PRK06550 6 KTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKP 41 (235)
T ss_pred CEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 56778886 999999999999999999888776543
No 165
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=88.05 E-value=0.97 Score=36.29 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=27.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN--GHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~--gheVvgVVTq 93 (124)
|||+++|.|.+|..+.+.|.+. ++++++|+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~ 35 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR 35 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC
Confidence 8999999999999999998875 4788887643
No 166
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.05 E-value=1.4 Score=33.27 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=30.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+..++++.|. +.+|..+.+.|+++|++|+.+...+++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 3467888887 899999999999999999988877654
No 167
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=88.05 E-value=1.5 Score=32.63 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+++++.|. +.+|..+.+.|+++|++|+++...+
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 357888887 8999999999999999999998766
No 168
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.02 E-value=0.73 Score=41.08 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||.++|||-.|.-.---|.+.||||++|=-.+.|.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV 36 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKV 36 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 899999999999987766777899999999888876
No 169
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.92 E-value=1.1 Score=33.72 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++++.|. +.+|..+.++|+++|++|+.+.+.+++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~ 42 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAE 42 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46888887 899999999999999999888776543
No 170
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.92 E-value=1.2 Score=33.09 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=30.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+++++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~ 41 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE 41 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899998 99999999999999999998876653
No 171
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.84 E-value=1.3 Score=34.58 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
+..||+++|.|++|...++.|++.|++|+-|
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VI 39 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVI 39 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 3468999999999999999999999988755
No 172
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.83 E-value=0.83 Score=34.13 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=29.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+|++.|. +.+|..+.+.|+++|++|+++...++
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~ 37 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAP 37 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6888887 99999999999999999999887654
No 173
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.82 E-value=1.3 Score=32.18 Aligned_cols=35 Identities=31% Similarity=0.277 Sum_probs=28.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.-+|+++|+|.-|..++.+|.+.|-+|..+.+.|.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 46899999999999999999998888999888875
No 174
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.80 E-value=1.1 Score=33.00 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=29.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++|+++...++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47888887 89999999999999999999887665
No 175
>PRK08177 short chain dehydrogenase; Provisional
Probab=87.78 E-value=1.6 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=30.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.++++.|. +.+|..+.+.|.++|++|+++-..+++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~ 38 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQD 38 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence 35778885 9999999999999999999998887654
No 176
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.55 E-value=1.1 Score=36.77 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=30.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP~ 98 (124)
|||+++|+|.+|..+...|..+| ++|+.+=..+++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhh
Confidence 68999999999999999988888 57777766666553
No 177
>PLN02712 arogenate dehydrogenase
Probab=87.51 E-value=1.2 Score=40.87 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
..+|||+|+|.|.+|..+.+.|.+.|++|+++-..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34589999999999999999999889999876543
No 178
>PRK08628 short chain dehydrogenase; Provisional
Probab=87.50 E-value=1.4 Score=33.14 Aligned_cols=37 Identities=24% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+..+|++.|. +.+|..+.+.|+++|++|+.+...+++
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD 43 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh
Confidence 4457888886 899999999999999999887766654
No 179
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=87.48 E-value=0.86 Score=37.18 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|+|+++|+|++|..+-..+...||||+=--+..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 8899999999999999899999999865544443
No 180
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.28 E-value=1 Score=36.54 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
-||+++|.|..|..+-..++..||+|+.+-..|++-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~ 41 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELA 41 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 389999999999999999999999999988877753
No 181
>PRK08309 short chain dehydrogenase; Provisional
Probab=87.25 E-value=0.94 Score=34.60 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|++++.|...|+..+.+.|.++||+|..+...+++
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~ 35 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVK 35 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHH
Confidence 67888998778888889999999999887665543
No 182
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.23 E-value=1.2 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=30.8
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
.|||++.|. |.+|..+.++|+++ ||+|+++...++
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~ 351 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSD 351 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCch
Confidence 489999996 99999999999985 799999987665
No 183
>PLN02712 arogenate dehydrogenase
Probab=87.14 E-value=1.1 Score=41.08 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
++|||+|+|.|.+|..+.+.|.+.|++|+++-..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECC
Confidence 4589999999999999999998889999866544
No 184
>PRK07814 short chain dehydrogenase; Provisional
Probab=87.14 E-value=1.2 Score=34.00 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=30.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+++++.|. +.+|..+.+.|+++|++|+.+.+.++
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~ 45 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES 45 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467888888 88999999999999999998887664
No 185
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=87.13 E-value=1.8 Score=34.65 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=27.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqP 94 (124)
|||+++|. |.+|..+++.+.+. ++++++++-..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 89999997 99999999888764 68999987543
No 186
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.10 E-value=1.1 Score=34.81 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=29.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+.++|++.|.|.+|..+.+.|.+.|++|++.-.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999854333
No 187
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.06 E-value=1.4 Score=36.07 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||+++|. ++ |..+.+.|.++||+|++.++.+...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~ 36 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGK 36 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcc
Confidence 67887776 66 9999999999999999999888654
No 188
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.03 E-value=1 Score=33.66 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.++++++| +|.+|..+.+.|.++|++|..+-..++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~ 63 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLE 63 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 447899998 599999999999988999988766554
No 189
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=87.02 E-value=1.3 Score=33.61 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=29.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-.+++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAE 41 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56888887 89999999999999999988876654
No 190
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=86.98 E-value=0.67 Score=34.11 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
||+++|+|.+|..+-..|.++||+|..--+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~ 33 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE 33 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 799999999999888888889999887766553
No 191
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.90 E-value=1.4 Score=35.28 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC----CeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG----HSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g----heVvgVVTqP 94 (124)
|||.|+|.|.+|..+...|.++| ++|.++...+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~ 38 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK 38 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence 68999999999999999999877 7888776543
No 192
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.85 E-value=1.3 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=29.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 47888887 99999999999999999988766554
No 193
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.75 E-value=1.2 Score=33.23 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=31.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++|++.|. +.+|..+.+.|.++|++|+++..++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~ 45 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVER 45 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367888887 999999999999999999999887654
No 194
>PRK06523 short chain dehydrogenase; Provisional
Probab=86.71 E-value=1.9 Score=32.41 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.++|++.|. +.+|..+.+.|.++|++|+++...+++
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~ 45 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD 45 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence 3467888886 899999999999999999988876553
No 195
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.62 E-value=1.4 Score=33.20 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..++++.|. +.+|..+.+.|+++|++|+.+..+++
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 44 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD 44 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 356888887 99999999999999999988877654
No 196
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.52 E-value=1.3 Score=31.22 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDK 96 (124)
+..||+++|.|..|..+.+.|.+.| ++|..+-.++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~ 55 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEK 55 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 3478999999999999999998875 667666555443
No 197
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.51 E-value=2.1 Score=32.34 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=28.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+.+++++.|. +.+|..+.+.|.++|++|+.+....
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~ 41 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA 41 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3467888886 9999999999999999998765543
No 198
>PRK06841 short chain dehydrogenase; Provisional
Probab=86.51 E-value=1.9 Score=32.23 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+..+|++.|. +.+|..+.+.|+++|++|+.+.+.++
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3457888886 99999999999999999988776554
No 199
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.46 E-value=1.5 Score=32.31 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=29.8
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..++++.|. +.+|..+.+.|+++|++|+.+...++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457889997 99999999999999999988876654
No 200
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.37 E-value=1.6 Score=33.77 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=30.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|.++|++|+++..++++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~ 40 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEED 40 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 36788887 999999999999999999999887764
No 201
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.31 E-value=0.97 Score=39.50 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=29.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||+|+|+|.+|..+...|+.+||+|...=..|++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~ 39 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEA 39 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 68999999999999999999999999766555443
No 202
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=86.27 E-value=1.7 Score=30.21 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqP 94 (124)
||+++|+ +..|..+++.|.+. ++++++|++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 6899995 88999999988874 78999997754
No 203
>PRK08703 short chain dehydrogenase; Provisional
Probab=86.25 E-value=1.6 Score=32.55 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+-..+++
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~ 42 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKK 42 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHH
Confidence 57888887 999999999999999999988877753
No 204
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=86.14 E-value=0.94 Score=39.18 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.|||.|+|.|..|.+.-..|.+ +|+|+++=..+++.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~v 41 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRI 41 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHH
Confidence 4899999999999999888665 69999999988875
No 205
>PLN02572 UDP-sulfoquinovose synthase
Probab=86.12 E-value=1.5 Score=37.55 Aligned_cols=32 Identities=28% Similarity=0.132 Sum_probs=28.4
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEE
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVV 91 (124)
+.|||++.|. |.+|..+.+.|+++||+|+++-
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 3478999997 9999999999999999999874
No 206
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.04 E-value=1.6 Score=32.46 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|+++|++|+.+...++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~ 42 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE 42 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46888887 89999999999999999998877654
No 207
>PRK08278 short chain dehydrogenase; Provisional
Probab=86.03 E-value=2.5 Score=32.77 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=30.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..++++.|. +.+|..+.+.|+++|++|+.+....++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 42 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEP 42 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccccc
Confidence 346888887 999999999999999999888776553
No 208
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.98 E-value=1.3 Score=35.33 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=30.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||+|+|.|..|..+...|+..|++|.++-.++++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 39 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAA 39 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 47999999999999999999999999988766654
No 209
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=85.91 E-value=1.7 Score=31.96 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.3
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..++++.|. +.+|..+.++|+++|+.|+....+++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~ 41 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVE 41 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 357888886 99999999999999998776655554
No 210
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=85.85 E-value=2.6 Score=31.94 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+..++++.|. +.+|..+.+.|+++|++|+.+-..+++.
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~ 46 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG 46 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3456788886 9999999999999999999887776654
No 211
>PRK06114 short chain dehydrogenase; Provisional
Probab=85.85 E-value=2.9 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=28.8
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+...+++.|. +.+|..+.+.|.++|++|+.+....+
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD 43 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3346777887 89999999999999999987766543
No 212
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.84 E-value=1.3 Score=36.71 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||.++|+|.+|....-.|.+.|++|..+...+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 799999999999999999998887777777666
No 213
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=85.77 E-value=1.8 Score=34.29 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=26.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCC----CeEEEEEcCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNG----HSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~g----heVvgVVTqP 94 (124)
.|||.|+|.|..|..++..|++.+ .+|.+.-.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~ 40 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK 40 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence 489999999999999999999865 2365554333
No 214
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.62 E-value=1.4 Score=33.04 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=30.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+|++.|. +.+|..+.++|+++|++|+++...++
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~ 47 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEE 47 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHH
Confidence 356888877 99999999999999999999888764
No 215
>PRK06924 short chain dehydrogenase; Provisional
Probab=85.59 E-value=2 Score=32.08 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=28.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+|++.|. +.+|..+.++|+++|++|+.+...+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 5788886 9999999999999999999887766
No 216
>PRK07680 late competence protein ComER; Validated
Probab=85.53 E-value=1 Score=35.67 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=21.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH 85 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh 85 (124)
|||.|+|.|..|..+...|.+.|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~ 24 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGA 24 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCC
Confidence 689999999999999999998873
No 217
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=85.47 E-value=1.5 Score=32.59 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=29.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~ 39 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREA 39 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH
Confidence 56888886 999999999999999999888776653
No 218
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.43 E-value=1.7 Score=36.35 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=26.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEE
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVV 91 (124)
.+||+|+|.|..|..+.+.|.+.|++|+...
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~ 33 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGL 33 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEE
Confidence 4789999999999999999999998875443
No 219
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.41 E-value=2.3 Score=36.50 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCC-------CeEEEEEcCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNG-------HSVVGVFTVVD 95 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~g-------heVvgVVTqPD 95 (124)
+..++|||.++|+|.||..+-..|.+++ |+|..-...++
T Consensus 7 ~~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 7 LRCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 4456799999999999999988888776 78877766664
No 220
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.41 E-value=1.2 Score=35.60 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=30.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
-||+++|.|.+|..+...|..+|++|+.+-..+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 36999999999999999999999999988766654
No 221
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.36 E-value=1.5 Score=40.34 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=31.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
..|++.|. |.+|..+.++|+++||+|+++..++++.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 45778887 9999999999999999999999887754
No 222
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.33 E-value=1.8 Score=32.69 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=30.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~ 43 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEA 43 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 57889998 999999999999999999988776653
No 223
>PLN02828 formyltetrahydrofolate deformylase
Probab=85.29 E-value=2.3 Score=35.38 Aligned_cols=37 Identities=11% Similarity=0.148 Sum_probs=25.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHh---C---CCeEEEEEcCCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKK---N---GHSVVGVFTVVDKAN 98 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~---~---gheVvgVVTqPDKP~ 98 (124)
+++||++|.|+. | -+|++|++ . ..||++|+|++|+|.
T Consensus 69 ~~~riavlvSg~-g-~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~ 111 (268)
T PLN02828 69 PKYKIAVLASKQ-D-HCLIDLLHRWQDGRLPVDITCVISNHERGP 111 (268)
T ss_pred CCcEEEEEEcCC-C-hhHHHHHHhhhcCCCCceEEEEEeCCCCCC
Confidence 458999998843 1 24444443 2 369999999998763
No 224
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.27 E-value=1.4 Score=38.05 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=30.0
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|||+|+| +|.+|..+...|.++|++|.++-..+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~ 36 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKK 36 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence 6899998 7999999999999889999887766554
No 225
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=85.09 E-value=1.9 Score=32.99 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=29.6
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+...+++.|. +.+|..+.+.|+++|++|+.+..+++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~ 45 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE 45 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456788887 99999999999999999988877654
No 226
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.05 E-value=1.1 Score=36.22 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=22.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH 85 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh 85 (124)
|||.|+|.|..|..+...|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~ 26 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNI 26 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC
Confidence 689999999999999999998775
No 227
>PRK07035 short chain dehydrogenase; Provisional
Probab=84.95 E-value=1.9 Score=32.28 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.++|.++|++|+++.++++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~ 43 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLD 43 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45778886 99999999999999999999987654
No 228
>PRK06500 short chain dehydrogenase; Provisional
Probab=84.93 E-value=1.8 Score=32.09 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=29.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.++|+++|++|+++..+++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~ 41 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPA 41 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH
Confidence 47888887 99999999999999999988766543
No 229
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.85 E-value=1.5 Score=33.13 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++++.|. +.+|..+.+.|+++|++|+.+..++++
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~ 37 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAG 37 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 4778886 999999999999999999988776653
No 230
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=84.75 E-value=2.2 Score=33.90 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=26.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+||++.|. |.+|..+.++|+++|++++.++..
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 57999986 999999999999999887666543
No 231
>PRK05650 short chain dehydrogenase; Provisional
Probab=84.63 E-value=1.7 Score=33.22 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|+|++.|. +.+|..+.++|+++|++|+.+...++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~ 35 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEE 35 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788876 99999999999999999988776554
No 232
>PRK07201 short chain dehydrogenase; Provisional
Probab=84.62 E-value=1.9 Score=37.41 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=29.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHH--hCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLK--KNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl--~~gheVvgVVTqPD 95 (124)
|||++.|. |.+|..++++|+ ++||+|.++...++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~ 37 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS 37 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcch
Confidence 68999986 999999999999 46899999998543
No 233
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=84.51 E-value=1.5 Score=32.57 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=28.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+|++.|. +.+|..+.+.|+++|++|+++.+.++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~ 36 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEA 36 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5788885 99999999999999999999988765
No 234
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.50 E-value=3.1 Score=30.86 Aligned_cols=31 Identities=26% Similarity=0.198 Sum_probs=26.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
.+|++.|. +.+|..+.++|+++|++|+.+..
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 57888886 88999999999999999876553
No 235
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=84.50 E-value=1.9 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEE
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgV 90 (124)
||++.|. |.+|..+.++|+++|++|+++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 4777775 999999999999999999876
No 236
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.39 E-value=1.3 Score=35.07 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=30.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||+++|.|..|..+...|..+|++|+++-.+|++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 47999999999999999999999999988665554
No 237
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=84.38 E-value=2.1 Score=32.24 Aligned_cols=34 Identities=18% Similarity=0.044 Sum_probs=28.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 41 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPA 41 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 46888886 99999999999999999988866554
No 238
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.32 E-value=1.4 Score=38.92 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN--GHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~--gheVvgVVTqPDKP 97 (124)
|||+++|.|-+|.+.--.|.+. ||+|++|-..+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v 39 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI 39 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH
Confidence 8999999999999998888876 58899999888876
No 239
>PRK06125 short chain dehydrogenase; Provisional
Probab=84.25 E-value=2.1 Score=32.45 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+..++++.|. +.+|..+.+.|+++|++|+++-..+++
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~ 43 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADA 43 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3467888887 899999999999999999888776653
No 240
>PRK07024 short chain dehydrogenase; Provisional
Probab=84.23 E-value=1.7 Score=32.98 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.+.|+++|++|+.+..++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~ 38 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDA 38 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 57888886 999999999999999999988776553
No 241
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.18 E-value=1.9 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.++++.|. +.+|..+.+.|+++|++|+.+..++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~ 38 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDR 38 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45788886 999999999999999999988877653
No 242
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=84.16 E-value=2.4 Score=35.38 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTq 93 (124)
|||+++|. |.+|..+++.|.+. ++++++|...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 89999995 99999999988875 5899999884
No 243
>PRK11579 putative oxidoreductase; Provisional
Probab=84.15 E-value=2.7 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCceEEEEcCCHHHHH-HHHHHHh-CCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAE-VYKLLKK-NGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~-iLeeLl~-~gheVvgVVTq 93 (124)
+++||+++|+|.+|.. .++.+.. .+.+++||...
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 3589999999999985 5565554 36899999753
No 244
>PRK07062 short chain dehydrogenase; Provisional
Probab=84.02 E-value=2.2 Score=32.26 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+++.|. +.+|..+.++|+++|++|+.+.+.+++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~ 44 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEER 44 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 45777887 899999999999999999988887754
No 245
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.00 E-value=2.1 Score=32.90 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++|++|+++-..+++
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~ 45 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEK 45 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46778887 999999999999999999998876654
No 246
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.97 E-value=1.4 Score=35.10 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=29.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
||+|+|.|.+|..+-..|.++||+|..+-..+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~ 36 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQ 36 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 6999999999999999898899999988665543
No 247
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.96 E-value=1.7 Score=35.94 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=27.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..|||.++|+|.+|..+-..|.++|+ ++.....++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g~-v~l~~~~~~ 40 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRGP-TLQWVRSAE 40 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEeCCHH
Confidence 34899999999999999888888874 555545443
No 248
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.84 E-value=1.6 Score=37.74 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=29.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||.++|+|.||..+-..|.++||+|..-...|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence 7899999999999998888889999988776543
No 249
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=83.82 E-value=2.4 Score=33.03 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=27.2
Q ss_pred ceEEEEcC--CHHHHHHHHHHHhCC--CeEEEEEcCC
Q psy16773 62 LRVAVIGQ--SSFAAEVYKLLKKNG--HSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT--p~FAa~iLeeLl~~g--heVvgVVTqP 94 (124)
|||+++.+ |..+.++++.+.+.+ .+|++|+++.
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC
Confidence 57888777 999999999987654 4899999985
No 250
>PRK07074 short chain dehydrogenase; Provisional
Probab=83.81 E-value=2.2 Score=32.03 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=29.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+|++.|. +.+|..+.+.|+++|++|+++.+.+++
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~ 38 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAA 38 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5777876 999999999999999999998877653
No 251
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.77 E-value=2.3 Score=31.99 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=28.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.++|+++|++|+.+-.+++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~ 44 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAE 44 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 46788886 99999999999999999988776654
No 252
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=83.74 E-value=1.3 Score=36.85 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=22.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG 84 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g 84 (124)
|||.|+|.|..|..++..|+++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g 24 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSG 24 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcC
Confidence 79999999999999999999988
No 253
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.67 E-value=2.4 Score=32.44 Aligned_cols=37 Identities=5% Similarity=-0.019 Sum_probs=30.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+...+++.|. ..+|..+.++|.++|++|+.+-+.+++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSA 41 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 3456888887 889999999999999999988776654
No 254
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=83.58 E-value=2.1 Score=32.30 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+|++.|. +.+|..+.+.|+++|++|+.+...+++
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~ 48 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEE 48 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 367888886 999999999999999999888776553
No 255
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=83.45 E-value=3.1 Score=34.63 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
++|.++|.|..|....+++.+.|++|+.+-..|+.|.
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa 39 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPA 39 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCch
Confidence 6799999999999999998888999999887777664
No 256
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.39 E-value=2.1 Score=34.22 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=29.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+||+++|+|.+|..+-..|.++||+|..+-..++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5899999999999998888888999988876554
No 257
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=83.31 E-value=2.7 Score=32.92 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=28.0
Q ss_pred ceEEEEcC--CHHHHHHHHHHHhCC--CeEEEEEcCCC
Q psy16773 62 LRVAVIGQ--SSFAAEVYKLLKKNG--HSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT--p~FAa~iLeeLl~~g--heVvgVVTqPD 95 (124)
|||+++-+ |..+.++++++.+.+ ++|+.|+++.+
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~ 39 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRP 39 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCc
Confidence 78888766 999999999987653 78999998864
No 258
>PRK12937 short chain dehydrogenase; Provisional
Probab=83.27 E-value=3.4 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
+..+|++.|. +.+|..+.+.|+++|++|+.+..
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 3467888886 99999999999999999876654
No 259
>PRK06482 short chain dehydrogenase; Provisional
Probab=83.21 E-value=2 Score=32.88 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=30.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.++|+++|++|+++..++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~ 38 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDA 38 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46888886 999999999999999999998877653
No 260
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=83.21 E-value=2.4 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=31.3
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP~ 98 (124)
||+++|+|.+|..+...|+..| ++|+.+-..+++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~ 39 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAE 39 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh
Confidence 7999999999999999998888 68888888777653
No 261
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.09 E-value=2.1 Score=32.26 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++|+++...++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~ 36 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNET 36 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35778887 99999999999999999999887654
No 262
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=83.08 E-value=2.8 Score=31.50 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVT 92 (124)
|||++.|.|.+|..+++.+.++ +.+++++.-
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 6899999999999999988754 689999864
No 263
>PRK08263 short chain dehydrogenase; Provisional
Probab=83.05 E-value=2.4 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=29.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+..++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~ 39 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTAT 39 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 35777886 999999999999999999988876653
No 264
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=83.00 E-value=2.8 Score=32.66 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.0
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|++.|. |.+|..+.+.|+++||++++++..++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~ 34 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK 34 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCC
Confidence 566775 99999999999999998888887654
No 265
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.00 E-value=2 Score=34.56 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC--eEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH--SVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh--eVvgVVTqPD 95 (124)
+||+++|.|.+|..+...|.+.|+ +|.++-..++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 689999999999999999988774 7777665554
No 266
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=82.94 E-value=2.5 Score=36.14 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhC-CCeEEEEE
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKN-GHSVVGVF 91 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~-gheVvgVV 91 (124)
|..+++||++.|.|.+|..+++.+.+. +.++++|.
T Consensus 1 ~~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~ 36 (338)
T PLN02358 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVN 36 (338)
T ss_pred CCCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEe
Confidence 344569999999999999999998864 57999885
No 267
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.92 E-value=1.3 Score=38.73 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=32.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
=+|+++|.|++|..+.++|.++||+++.|=.++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~ 453 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRV 453 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHH
Confidence 469999999999999999999999999998888765
No 268
>PRK06101 short chain dehydrogenase; Provisional
Probab=82.92 E-value=1.9 Score=32.47 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.4
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~ 37 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV 37 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4677776 999999999999999999988776543
No 269
>PRK12744 short chain dehydrogenase; Provisional
Probab=82.89 E-value=4.1 Score=30.81 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.5
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..++++.|. +.+|..+.+.|+++|++|+.+..+++
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~ 43 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSA 43 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCc
Confidence 357888886 99999999999999999877765543
No 270
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=82.88 E-value=2.7 Score=41.31 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||.++|.|++|.++++++.+.|+++++|.+.+|.+.
T Consensus 2 ~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a 38 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAAS 38 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCc
Confidence 4799999999999999999999999999999998754
No 271
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=82.87 E-value=2.7 Score=32.48 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCC--CeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNG--HSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~g--heVvgVVTqPD 95 (124)
+|++.|. |.+|..++++|+++| ++|.++++.++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 3677786 999999999999988 56999988765
No 272
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=82.84 E-value=0.89 Score=38.00 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP 97 (124)
...+|+++|+|.=|++++..|++++ .+|..|...|-..
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF 228 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 4579999999999999999999875 4899888877543
No 273
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=82.75 E-value=2.7 Score=34.28 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=31.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
+|.++|+|..|....+++.+.|++|+.+-..|+.|.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~ 36 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPA 36 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCCh
Confidence 388999999999999999999999999877777664
No 274
>PRK06196 oxidoreductase; Provisional
Probab=82.68 E-value=2.6 Score=33.43 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=30.0
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++|++|+++..++++
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDV 62 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46888887 899999999999999999998776653
No 275
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.53 E-value=3.8 Score=28.92 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.6
Q ss_pred EEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 64 VAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 64 IVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|+++|.|.+|..+-..|.+.||+|..+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999988988899988887766
No 276
>PRK12746 short chain dehydrogenase; Provisional
Probab=82.47 E-value=3.7 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=27.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+++.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r 39 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGR 39 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 57899997 999999999999999998766543
No 277
>PRK07579 hypothetical protein; Provisional
Probab=82.45 E-value=2.4 Score=35.08 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC----CCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN----GHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~----gheVvgVVTqPDK 96 (124)
+||+|+|.-..|..+++.|+++ .+++.+|.+..++
T Consensus 2 k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (245)
T PRK07579 2 KTILVLTDNVHAHALAVDLIARKNDMDVDYFCSFKSQTS 40 (245)
T ss_pred ceEEEEcccHHHHHHHHHHHhhccCcceEEEEeccCCcc
Confidence 6899999999999999999964 2688999998876
No 278
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.38 E-value=3.4 Score=34.31 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCC--eEEEEEcCCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGH--SVVGVFTVVDK 96 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gh--eVvgVVTqPDK 96 (124)
|.+..+||+++|.|.+|..+.-.|..++. |++.+=...++
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~ 43 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK 43 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch
Confidence 44556899999999999999888887775 67776665554
No 279
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=82.31 E-value=2.5 Score=33.49 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.+|++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~ 42 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKK 42 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 46788886 999999999999999999888765543
No 280
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=82.30 E-value=2.5 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC-CCeEEEEE
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN-GHSVVGVF 91 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~-gheVvgVV 91 (124)
|||++-|-|.+|..+++.++.+ ..||+||-
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaIn 31 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAIN 31 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEe
Confidence 6899999999999999999965 47999993
No 281
>PRK06194 hypothetical protein; Provisional
Probab=82.26 E-value=3.3 Score=31.75 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=28.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.++|+++|++|+.+-..++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~ 41 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQD 41 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 56888887 99999999999999999987766543
No 282
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=82.24 E-value=2.7 Score=35.26 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC-CCeEEEEEc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN-GHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~-gheVvgVVT 92 (124)
+||++.|.|.+|..+++.+.++ +.+|+||.-
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence 7999999999999999988764 589999986
No 283
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=82.18 E-value=2.3 Score=33.77 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=26.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|||.+.|. |.+|..+.+.|+++| +|+++...
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~ 32 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVH 32 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccc
Confidence 68999997 999999999999888 68776543
No 284
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=82.07 E-value=3.3 Score=35.06 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=22.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeE
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSV 87 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheV 87 (124)
+|||+++|+ |..|.++++.|.+++|.+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~ 31 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPV 31 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCc
Confidence 389999998 999999999888766643
No 285
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=81.86 E-value=3.3 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.2
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
.+++.|. +.+|..+.++|+++|++|+.+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 4677787 99999999999999999877553
No 286
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=81.85 E-value=3.1 Score=34.81 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..|+|.++|.|.+|..+.+.|...|++|.+.-..++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 347899999999999999998888999998876654
No 287
>PRK05693 short chain dehydrogenase; Provisional
Probab=81.76 E-value=2.5 Score=32.37 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=28.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++++.|. +.+|..+.+.|.++|++|+++..++++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~ 37 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAED 37 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5777776 999999999999999999988776643
No 288
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=81.70 E-value=3.7 Score=31.69 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=26.9
Q ss_pred CceEEEEcCCHHHHHHHHHHH--hCCCeEEEEEcC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLK--KNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl--~~gheVvgVVTq 93 (124)
+.||+++|+|..|..+.+.+. ..|++|+|++-.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC
Confidence 468999999999998887643 347999999865
No 289
>PRK06545 prephenate dehydrogenase; Validated
Probab=81.66 E-value=2.7 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=28.7
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
||.|+|+|.+|..+...|.+.|++|..+-..++
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~ 34 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS 34 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 699999999999999999999998877666655
No 290
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=81.56 E-value=3.3 Score=33.44 Aligned_cols=38 Identities=26% Similarity=0.207 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|.++.++|+++|.|..|..+--.|.++|++|+-+=..+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 66677899999999999988878888899876665544
No 291
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.47 E-value=1.7 Score=39.01 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=33.6
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+.+|+++|.|.+|..+.+.|.++|++++.|-.+|++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v 436 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAV 436 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHH
Confidence 4689999999999999999998999999999998864
No 292
>PRK06223 malate dehydrogenase; Reviewed
Probab=81.47 E-value=3.9 Score=32.81 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=30.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH-SVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh-eVvgVVTqPDKP 97 (124)
|||+++|.|..|..+...+...|+ +|+.+-..+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchh
Confidence 799999999999999888877665 888887766654
No 293
>PRK07832 short chain dehydrogenase; Provisional
Probab=81.46 E-value=2.5 Score=32.44 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=27.8
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++++.|. +.+|..+.++|.++|++|+.+...++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~ 35 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDAD 35 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5788886 99999999999999999988776554
No 294
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=81.42 E-value=2.4 Score=29.32 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=28.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+..+|+++|.|+.|..-++.|++.|.+|.-|-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3468999999999999999999999888776655
No 295
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.33 E-value=4.3 Score=32.24 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+.+||++.|-|.+|....+.|.+.|..|++|.-.-
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 45899999999999999999999999999988643
No 296
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=81.32 E-value=3.7 Score=33.83 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCC--eEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGH--SVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gh--eVvgVVTqP 94 (124)
|||+++|+ |.+|..+...|+..|+ +|+++-..+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 79999997 9999999999998875 588887744
No 297
>PRK06398 aldose dehydrogenase; Validated
Probab=81.29 E-value=5.2 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=28.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|.++|++|+.+-...+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 56888887 89999999999999999988766554
No 298
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.28 E-value=2.1 Score=37.57 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=33.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDKP~ 98 (124)
|||+++|.|.+|..+.+.|.+++ +||...=+.+++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~ 39 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCA 39 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHH
Confidence 89999999999999999999887 89999888887763
No 299
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=81.28 E-value=3.3 Score=34.60 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=28.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHh-CCCeEEEEEc-CCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKK-NGHSVVGVFT-VVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~-~gheVvgVVT-qPD 95 (124)
++||+++|+|.+|...+..+++ .+.++++|+- .|+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~e 37 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPE 37 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcc
Confidence 3799999999999999888875 4689998875 444
No 300
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.19 E-value=4 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=29.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.++|+++|++|+.+-.+++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57888887 99999999999999999988877665
No 301
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=81.06 E-value=3 Score=31.68 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
||+++|+|..|..+-..++..||+|..+-..++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 6899999999999988888889999988876653
No 302
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.00 E-value=5.1 Score=31.62 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.++|++.|. +.+|..+.+.|+++|++|+.+...++
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~ 81 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEH 81 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3467889986 99999999999999999988776654
No 303
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=80.84 E-value=3 Score=33.10 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=24.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCe-EEEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHS-VVGV 90 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~ghe-VvgV 90 (124)
|||++.|. |.+|..+.++|+++|++ |+++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEe
Confidence 68999987 99999999999998876 4443
No 304
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.83 E-value=2.5 Score=33.19 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.6
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+|++.|. +.+|..+.++|+++|++|+.+..+++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 356888887 99999999999999999988877654
No 305
>PRK07236 hypothetical protein; Provisional
Probab=80.75 E-value=6.4 Score=32.11 Aligned_cols=37 Identities=24% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++.++|+++|.|-.|..+-..|.++|++|+-+=..+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3558999999999999988888888999877776653
No 306
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.70 E-value=3.9 Score=31.15 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=28.8
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+..++++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~ 45 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQE 45 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3346788887 89999999999999999887765544
No 307
>PRK07775 short chain dehydrogenase; Provisional
Probab=80.56 E-value=3.4 Score=31.89 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=28.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+++.|. +.+|..+.+.|+++|++|+.+...++
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~ 45 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVE 45 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788886 99999999999999999988876554
No 308
>PRK06270 homoserine dehydrogenase; Provisional
Probab=80.54 E-value=3 Score=34.83 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=27.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHhC----------CCeEEEEEc
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKN----------GHSVVGVFT 92 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~----------gheVvgVVT 92 (124)
.+||+++|.|.+|..+++.|.++ +.+|++|..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d 43 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIAD 43 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEe
Confidence 48999999999999999888754 468999986
No 309
>PRK05865 hypothetical protein; Provisional
Probab=80.54 E-value=3.1 Score=39.78 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|||++.|. |.+|..+.+.|+++||+|+++...+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~ 34 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHR 34 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCc
Confidence 68999996 9999999999999999999988764
No 310
>PRK12743 oxidoreductase; Provisional
Probab=80.42 E-value=3.8 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=26.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
++++.|. +.+|..+.+.|+++|++|+.+....
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~ 36 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSD 36 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4777787 8999999999999999998776543
No 311
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=80.28 E-value=3.6 Score=30.05 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.5
Q ss_pred EEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 65 AVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 65 VFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
++.|. +.+|..+.+.|+++||+|+++.+.+
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~ 32 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSS 32 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45665 9999999999999999998887765
No 312
>PLN02735 carbamoyl-phosphate synthase
Probab=80.19 E-value=3.8 Score=39.87 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.9
Q ss_pred CceEEEEcCCHH-----------HHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSF-----------AAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~F-----------Aa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
..||.++|+|.+ |..++++|.+.||+|++|-.+|+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~ 70 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATI 70 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccc
Confidence 368999999885 6679999999999999999998653
No 313
>PRK08643 acetoin reductase; Validated
Probab=80.19 E-value=3.8 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++++.|. +.+|..+.+.|+++|++|+.+..++++
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~ 38 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEET 38 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4677777 999999999999999999888776543
No 314
>PRK06483 dihydromonapterin reductase; Provisional
Probab=80.10 E-value=5.2 Score=29.75 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=28.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.++|.++|++|+.+-.+++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 37 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY 37 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch
Confidence 45778886 89999999999999999998876654
No 315
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=79.84 E-value=3.8 Score=29.22 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=24.2
Q ss_pred eEEEEc----CCHHHHHHHHHHHhCCCeEEEE
Q psy16773 63 RVAVIG----QSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 63 KIVFmG----Tp~FAa~iLeeLl~~gheVvgV 90 (124)
+|+++| .+.+|..+++.|.++||+|..|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~V 33 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPV 33 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEE
Confidence 589999 4789999999999999999988
No 316
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.74 E-value=5.2 Score=30.78 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=30.7
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCC-CeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNG-HSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~g-heVvgVVTqPDK 96 (124)
.++|++.|. +.+|..+.++|+++| ++|+.+...+++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 367888887 999999999999885 899999887764
No 317
>PRK06953 short chain dehydrogenase; Provisional
Probab=79.67 E-value=3.4 Score=30.63 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=28.4
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++++.|. +.+|..+.++|+++|++|+.+..++++
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~ 37 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDAAA 37 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHH
Confidence 5777775 999999999999999999988776543
No 318
>PRK12367 short chain dehydrogenase; Provisional
Probab=79.29 E-value=3.8 Score=31.97 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=28.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.++++.|. +.+|..+.++|+++|++|+++...+
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 36778887 8999999999999999998887655
No 319
>PRK07206 hypothetical protein; Provisional
Probab=79.27 E-value=4.6 Score=33.39 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=31.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.+++++|+...|..+.+++.+.|++++.|.+.++.+
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~ 38 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLD 38 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCc
Confidence 469999999999999999998999999999988653
No 320
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=79.24 E-value=5.3 Score=30.13 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=28.6
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
....+|++.|. +.+|..+.+.|.++|++|+.+...
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 34567888887 999999999999999998876543
No 321
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.20 E-value=5.7 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=26.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
+++++.|. +.+|..+.+.|+++|++|+.+..
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~ 36 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYA 36 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 56888887 99999999999999999876543
No 322
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.19 E-value=5 Score=30.25 Aligned_cols=33 Identities=6% Similarity=0.192 Sum_probs=27.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-...
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 56888886 9999999999999999988775543
No 323
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=78.86 E-value=6.1 Score=34.30 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.++|++.|. +.+|..+.++|.++|++|+++..++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~ 214 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDK 214 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3467888888 999999999999999999988766543
No 324
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.72 E-value=5.8 Score=29.57 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=27.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.|++.|. +.+|..+.+.|+++|++|+.+.+.+
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~ 36 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPD 36 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence 4677777 9999999999999999999887654
No 325
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.66 E-value=4.2 Score=30.68 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~ 42 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAA 42 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788887 89999999999999999988766544
No 326
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=78.63 E-value=4.1 Score=39.25 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=30.8
Q ss_pred ceEEEEcCCHH-----------HHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSF-----------AAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~F-----------Aa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.||.++|+|.. |..++++|.+.||+|++|-.+|+..
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~ 54 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATI 54 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchh
Confidence 68999999876 5678899999999999999888643
No 327
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=78.57 E-value=3.4 Score=34.40 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+..++++-|. +.+|.++-+.|.++||+++.|-++-||-
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL 43 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKL 43 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 3467888998 9999999999999999999999988854
No 328
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=78.56 E-value=5.5 Score=36.00 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=33.8
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
..+||.++|.|..|....+++.+.||+|+.+-..||.|.
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa 59 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPA 59 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 346899999999999999999999999999988777554
No 329
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=78.48 E-value=3.2 Score=30.83 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=29.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+.||+++|+|..|.-.++.+..-|++++..-..+++.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~ 56 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERL 56 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHH
Confidence 4899999999999999998888899998877766543
No 330
>PRK12742 oxidoreductase; Provisional
Probab=78.39 E-value=6.3 Score=29.05 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+..
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 57888886 99999999999999999876654
No 331
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=78.23 E-value=5.7 Score=29.23 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=27.9
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
++++.|. +.+|..+.+.|+++|++|+.+.+.++
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~ 37 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGN 37 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 5677775 99999999999999999999887753
No 332
>PLN02253 xanthoxin dehydrogenase
Probab=77.88 E-value=5.7 Score=30.39 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=29.1
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+++++.|. +.+|..+.++|+++|++|+.+-..++
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~ 53 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDD 53 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 357888887 99999999999999999988865543
No 333
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=77.81 E-value=6 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.3
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCCCCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVVDKAN 98 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqPDKP~ 98 (124)
.|||++.|. |..|..+++.+.+. ++++++.+-+++.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~ 41 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS 41 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc
Confidence 389999999 99999999998875 489999999988754
No 334
>KOG1429|consensus
Probab=77.79 E-value=4.5 Score=35.53 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+||.+.|. |-+|.-+.+.|..+||+|+++----+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ft 62 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFT 62 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccc
Confidence 4599999999 88888999999999999999854433
No 335
>PRK06349 homoserine dehydrogenase; Provisional
Probab=77.74 E-value=3.9 Score=35.22 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhC----------CCeEEEEEc
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKN----------GHSVVGVFT 92 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~----------gheVvgVVT 92 (124)
+++||+++|.|.+|..+++.|.++ +.+|++|+.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~ 44 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAV 44 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEe
Confidence 358999999999999888776432 357888865
No 336
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=77.63 E-value=5.3 Score=31.51 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=26.3
Q ss_pred CCceEEEEcCCHHHH-HHHHHHHhCC--CeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQSSFAA-EVYKLLKKNG--HSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGTp~FAa-~iLeeLl~~g--heVvgVVTqPD 95 (124)
++|||+++|.|.++. ..+..+.+.+ .++++|+..-.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~ 40 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP 40 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH
Confidence 458999999997776 4777776654 48888876443
No 337
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.63 E-value=4.5 Score=34.20 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=29.0
Q ss_pred CceEEEEc-CCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 61 DLRVAVIG-QSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmG-Tp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.+||+++| .|.+|..+-..|.++||+|.++-..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 37899999 8999999999999999998887654
No 338
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.45 E-value=7.6 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=28.2
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
..+|++.|. +.+|..+.+.|+++|++|+.+...
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 356888887 999999999999999999887665
No 339
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=77.44 E-value=6.4 Score=32.83 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGH-SVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gh-eVvgVVTqPDKP 97 (124)
+.+||+++|+|.+|..+...+..+|+ +|+.+=..+++.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP 43 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh
Confidence 34799999999999988887777785 877777777764
No 340
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.43 E-value=4.7 Score=32.80 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.++|+++|++|+.+..+++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~ 43 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEE 43 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46888887 99999999999999999988876654
No 341
>PRK07045 putative monooxygenase; Reviewed
Probab=77.38 E-value=8.8 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.3
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|.+.+++|+++|.|..|..+--.|.++|++|+-+=..|+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 344568999999999999888888888999877766554
No 342
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=77.30 E-value=7.9 Score=28.85 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+.+.|++.|. +.+|..+-++|.++|++|+.+....+.
T Consensus 4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~ 41 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEE 41 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 4467888888 679999999999989998888877664
No 343
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=77.29 E-value=3.3 Score=28.46 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 74 AEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 74 a~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+-++|.++||||. +.|.++-
T Consensus 16 lala~~L~~rGh~V~-~~~~~~~ 37 (139)
T PF03033_consen 16 LALARALRRRGHEVR-LATPPDF 37 (139)
T ss_dssp HHHHHHHHHTT-EEE-EEETGGG
T ss_pred HHHHHHHhccCCeEE-Eeecccc
Confidence 466788999999999 7777663
No 344
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=77.14 E-value=5.1 Score=32.61 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=26.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|+|+++|.|-.|..+-.+|.++|++|+-+=..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 68999999999999888898889986544443
No 345
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=77.13 E-value=5.7 Score=33.43 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCCceEEEEcCC----------HHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 59 KCDLRVAVIGQS----------SFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 59 ~k~MKIVFmGTp----------~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.++|||+++.-+ ..-....++|.++||+|.-+.++++.+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~ 104 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP 104 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 356999988431 222355567778899998887776544
No 346
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=76.87 E-value=6.2 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=26.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+..+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~ 35 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYAR 35 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888887 899999999999999998766543
No 347
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=76.85 E-value=4 Score=28.92 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGH 85 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gh 85 (124)
..||+++|.|..|.++++.|...|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC
Confidence 3689999999999999999998886
No 348
>PRK06753 hypothetical protein; Provisional
Probab=76.83 E-value=8.4 Score=30.85 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=28.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||+++|.|..|..+-..|.++|++|+-+=..|+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999888888888999877666665
No 349
>PRK07069 short chain dehydrogenase; Validated
Probab=76.74 E-value=5.4 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=26.1
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
||++.|. +.+|..+.+.|+++|++|+.+...
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3677775 999999999999999999888765
No 350
>PRK09242 tropinone reductase; Provisional
Probab=76.65 E-value=5.2 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|.++|++|+.+...++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~ 44 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDAD 44 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46778886 89999999999999999988876654
No 351
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=76.47 E-value=13 Score=28.36 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDI 102 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~ 102 (124)
++|+++|.|.-|..+-..|.++|++|+-+=..++....+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~ 42 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRG 42 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccc
Confidence 57999999999998888888999998888877765443333
No 352
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.44 E-value=3.9 Score=33.51 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDKP 97 (124)
..+||+++|+|.+|..+++.|...| ++|..+-..+++.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 3589999999999999999988765 5666665555543
No 353
>PRK06198 short chain dehydrogenase; Provisional
Probab=76.38 E-value=5.1 Score=30.07 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCe-EEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHS-VVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~ghe-VvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++ |+.+-..++
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE 42 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence 56888887 89999999999999998 776655543
No 354
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.38 E-value=4.4 Score=34.13 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=30.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||+++|+|-+|..+-..++..||+|...-..|+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~ 42 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGA 42 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 47999999999999999888999999988777653
No 355
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=76.30 E-value=5.9 Score=32.97 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=27.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCC-CeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNG-HSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~g-heVvgVVTqPD 95 (124)
|||+++|. |..|..+++.|.++. ++|+++++...
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~ 36 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPR 36 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChh
Confidence 68999995 999999999877755 69999976553
No 356
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.25 E-value=7.2 Score=31.19 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCHHHHH-----HHHHHHhCCCeEEEEEcCCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAE-----VYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~-----iLeeLl~~gheVvgVVTqPDK 96 (124)
|+.+.+||++.=||.+|+. ++++|.+.|++|..|+|+.-.
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3445578887666777664 367787889999999997654
No 357
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=76.12 E-value=5.4 Score=32.64 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=27.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.+|+++|.|-.|..+--+|.++|++|+-+=.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 38999999999999988999989998666444
No 358
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=76.09 E-value=4.6 Score=30.71 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.2
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCC--CeEEEEE
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNG--HSVVGVF 91 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~g--heVvgVV 91 (124)
||++.|. |.+|..++++|+++| ++|+++-
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 4778886 999999999999876 7888764
No 359
>PRK05717 oxidoreductase; Validated
Probab=76.03 E-value=5.9 Score=29.90 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=28.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+-..++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~ 45 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE 45 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 46888887 99999999999999999888755543
No 360
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=75.88 E-value=5.8 Score=34.90 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=28.2
Q ss_pred ceEEEEc-CCHHHHHHHHHHHhC--CCeEEEEEcCCC
Q psy16773 62 LRVAVIG-QSSFAAEVYKLLKKN--GHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmG-Tp~FAa~iLeeLl~~--gheVvgVVTqPD 95 (124)
.||+++| ||.+|...|+.+.+. .++|+|+...-+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n 38 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKN 38 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCC
Confidence 4799999 799999999988653 589999986544
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.88 E-value=6.8 Score=33.27 Aligned_cols=33 Identities=27% Similarity=0.136 Sum_probs=27.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
..||+++|.|..|..+.+.|.++|++|+.+=..
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999999999999988888899998776433
No 362
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=75.87 E-value=3.7 Score=29.27 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred ceEEEEcCCHH----HHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSF----AAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~F----Aa~iLeeLl~~gheVvgVVTqP 94 (124)
|||++.=||.+ +...+++|.++|+||..|+|+.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 45665544443 3477888888899999999854
No 363
>PRK06139 short chain dehydrogenase; Provisional
Probab=75.58 E-value=4.8 Score=33.01 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=29.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..|++.|. +.+|..+.++|.++|++|+.+..++++
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~ 43 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEA 43 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 46888888 899999999999999999988776653
No 364
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=75.57 E-value=7.4 Score=27.90 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
||+++|.|.-|..+..+|.+.+++|+-|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 6899999999999999999889998777
No 365
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=75.48 E-value=5.2 Score=35.54 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=28.6
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhC--CCeEEEEEcC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKN--GHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~--gheVvgVVTq 93 (124)
+.|||++.|. |.+|..+++.|+++ +|+|+++-..
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~ 41 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKL 41 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3489999995 99999999999987 6899887643
No 366
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=75.39 E-value=6 Score=29.73 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=28.0
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+|++.|. +.+|..+.++|.++|++|+.+-+.++
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~ 37 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSE 37 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 5778887 89999999999999999988876554
No 367
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=75.30 E-value=5.4 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=30.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCC-eEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGH-SVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gh-eVvgVVTqPDKP 97 (124)
|||+++|+|.+|..+...|..+|+ +|+.+-...+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~ 38 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP 38 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh
Confidence 789999999999999988888776 888887766543
No 368
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=75.14 E-value=8 Score=33.31 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=29.9
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTqPD 95 (124)
.+|||+++|. |..|.++++.|.++ .++|..+.....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhh
Confidence 4589999999 99999999988876 579999987543
No 369
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=75.11 E-value=7.4 Score=33.85 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=34.0
Q ss_pred eEEecCCCCccCCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 46 VFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 46 ~~~~~~s~~~~M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
++++++..-+.+ +..+|+|+|.|.+|..+.+.|.+.|++|++..+.
T Consensus 3 ~~~~~d~~~~~L--kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~ 48 (335)
T PRK13403 3 TYYEKDANVELL--QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP 48 (335)
T ss_pred eeccccCChhhh--CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc
Confidence 344544333333 3467999999999999999999999999876643
No 370
>PLN02602 lactate dehydrogenase
Probab=75.04 E-value=8.1 Score=32.95 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=28.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP 97 (124)
+||+++|+|.+|..+.-.|+.++ .|++.+=..+++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~ 75 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKL 75 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchh
Confidence 79999999999999988887665 3677776666654
No 371
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.97 E-value=7.9 Score=29.48 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=26.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.++++.|. +.+|..+-++|+++|++|+.+-.+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~ 41 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA 41 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence 45777886 999999999999999999877543
No 372
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=74.71 E-value=11 Score=28.28 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=31.2
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
...+|.++|.|.+|..+.+.|..-|.+|+++-..++.
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~ 71 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKP 71 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCCh
Confidence 3478999999999999999888779999998887764
No 373
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=74.65 E-value=9.6 Score=27.42 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCe-EEEEEcCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHS-VVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~ghe-VvgVVTqPDK 96 (124)
+..|++++|+|..|..++..|.+.|.+ |.-+-+.++|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~r 48 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPER 48 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 347899999999999999999999876 6555555443
No 374
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=74.50 E-value=10 Score=25.10 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVV 91 (124)
...+++++|+|..|..+.+.|.+.+...+.++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~ 53 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLC 53 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 34689999999999999999998743334444
No 375
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.40 E-value=6.2 Score=29.72 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=28.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+++++.|. +.+|..+.+.|.++|++|+.+-.++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~ 37 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEK 37 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 35777777 889999999999999999888776653
No 376
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.38 E-value=8 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=26.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEE
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVV 91 (124)
.||+++|.|..|..-++.|++.|.+|+-|-
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 589999999999999999999998887443
No 377
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=74.26 E-value=4.1 Score=36.93 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=28.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
|||++.|.|--|..+-.+|.++||+|+-.=+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEecc
Confidence 78999999999999999999999999754443
No 378
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=74.20 E-value=8.5 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=28.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC---CCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN---GHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~---gheVvgVVTqP 94 (124)
-+++++|+|+-|..+.++|.++ |++|+|++...
T Consensus 147 rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~ 182 (476)
T PRK15204 147 KKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTD 182 (476)
T ss_pred CeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCC
Confidence 5799999999999999988764 79999999743
No 379
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=74.08 E-value=5.3 Score=33.28 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
|||.++|.|.-+..+.+++.+.++.+ .|++.|+++
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~~-~~~~~~~~~ 35 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLVK-YVYVAPGNA 35 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCcc-EEEEECCCH
Confidence 79999999999999999998877644 555666655
No 380
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.06 E-value=8 Score=33.04 Aligned_cols=39 Identities=33% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 58 HKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 58 ~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+...+||+++|.|..|..+...|.+.||+|+- +..-+++
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~v-ie~~~~~ 168 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTV-FEALHKP 168 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEE-EecCCCC
Confidence 34568999999999999999999888999754 4443444
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=73.78 E-value=7.1 Score=34.86 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=25.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.||+++|+|.-|...++.|++.|++++ ++=+-|...
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~-~fE~~~~iG 37 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVT-CFEKSDDIG 37 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEE-EEESSSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCe-EEecCCCCC
Confidence 479999999999999999999999987 444444443
No 382
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=73.65 E-value=6.7 Score=34.17 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=26.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
+.+|+++|.|.-|..+..+|.++|++|+.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vf 39 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVF 39 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEE
Confidence 478999999999999999999999887643
No 383
>KOG1203|consensus
Probab=73.50 E-value=5 Score=35.64 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
.+.+.|.+.|. |..|..+.+.|+++||.|-+++..-+++..
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~ 118 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAED 118 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhh
Confidence 34578888998 999999999999999999999998877653
No 384
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=73.25 E-value=9.4 Score=25.98 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=27.0
Q ss_pred eEEEEcC--CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 63 RVAVIGQ--SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 63 KIVFmGT--p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
||+++|. ..+.....++|.++||||.-+....+.
T Consensus 1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 5788877 446778888898889999988886664
No 385
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=73.23 E-value=6 Score=27.81 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=23.9
Q ss_pred EEcCCHHHHHHHHHHHhC-CCeEEEEEcCC
Q psy16773 66 VIGQSSFAAEVYKLLKKN-GHSVVGVFTVV 94 (124)
Q Consensus 66 FmGTp~FAa~iLeeLl~~-gheVvgVVTqP 94 (124)
++|++++|..++++|.++ ++++++.+..-
T Consensus 1 I~Gag~~g~~i~~~l~~~~~~~~vgfidd~ 30 (197)
T cd03360 1 IIGAGGHARVVADILEADSGYEVVGFLDDD 30 (197)
T ss_pred CEecCHHHHHHHHHHHhCCCceEEEEEeCC
Confidence 479999999999999876 68888876633
No 386
>PRK12999 pyruvate carboxylase; Reviewed
Probab=73.22 E-value=8.5 Score=37.84 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.6
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
||.+++.|++|.++++++.+.|+++++|.+.+|+.
T Consensus 7 kvLianrGeiavri~raa~elGi~~Vav~s~~D~~ 41 (1146)
T PRK12999 7 KVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKL 41 (1146)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 79999999999999999999999999999999863
No 387
>PRK08163 salicylate hydroxylase; Provisional
Probab=73.20 E-value=14 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+++|+++|.|-.|..+--.|.++|++|.-+=..|.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 348999999999999888888888999876655543
No 388
>PRK07578 short chain dehydrogenase; Provisional
Probab=72.97 E-value=9.6 Score=27.72 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
|++++.|. +.+|..+.+.|.++ ++|+++...+
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~ 33 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSS 33 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCC
Confidence 57888887 88999999999888 8888876654
No 389
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=72.89 E-value=7.8 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCC---eEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGH---SVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gh---eVvgVVTqP 94 (124)
|||+++|. |..|..+++.|.+++| ++.++....
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~ 38 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR 38 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc
Confidence 79999999 9999999998888766 568876554
No 390
>PRK05855 short chain dehydrogenase; Validated
Probab=72.84 E-value=7.2 Score=32.49 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+.+++++.|. +.+|..+.++|.++|++|+.+-.+++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~ 350 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA 350 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4478888987 99999999999999999988877654
No 391
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=72.77 E-value=13 Score=35.77 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=32.4
Q ss_pred CCceEEEEcCCHH-----------HHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 60 CDLRVAVIGQSSF-----------AAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 60 k~MKIVFmGTp~F-----------Aa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.+.||+++|+|.. ++++.++|.+.||+++.|-++|+...
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs 602 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVS 602 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCcccc
Confidence 3468999999864 66889999999999999999988653
No 392
>PRK05854 short chain dehydrogenase; Provisional
Probab=72.73 E-value=7 Score=31.30 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+++.|. +.+|..+.++|+++|++|+.+...+++
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~ 50 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAK 50 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 56788887 999999999999999999888776543
No 393
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=72.65 E-value=5.4 Score=34.44 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=33.2
Q ss_pred ccccCceeEEecCCCCccCCCCCceEEEEcCCHHHHHHHHHHHh-CCCeEEEEEcCCCCC
Q psy16773 39 ICHPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKK-NGHSVVGVFTVVDKA 97 (124)
Q Consensus 39 ~c~~~~~~~~~~~s~~~~M~~k~MKIVFmGTp~FAa~iLeeLl~-~gheVvgVVTqPDKP 97 (124)
.-.+.+.++++-+ +++=.|.||..++-.+++ +||. |||+.|||=.
T Consensus 13 GWd~lDvilVtGD-------------AYVDHPsFG~AiIgR~Le~~Gyr-VgIiaQPdw~ 58 (302)
T PF08497_consen 13 GWDELDVILVTGD-------------AYVDHPSFGAAIIGRVLEAHGYR-VGIIAQPDWR 58 (302)
T ss_pred CCccccEEEEeCc-------------ccccCcchhHHHHHHHHHHcCCe-EEEEeCCCCC
Confidence 3345566666655 456679999999998886 5886 5999999943
No 394
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=72.65 E-value=9.1 Score=30.45 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=28.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+++|+++|.|-+|..+.-+|.++|++|+-+=..+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 34889999999999999889999999776655444
No 395
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=72.47 E-value=8.2 Score=31.07 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=28.0
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCC--CeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNG--HSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~g--heVvgVVTqPD 95 (124)
.++|++.|. |.+|..+.+.|+++| ++|+++...+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~ 41 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL 41 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh
Confidence 367898887 999999999999875 78887765443
No 396
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.43 E-value=11 Score=28.40 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=27.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-..
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 46778887 999999999999999999877654
No 397
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.37 E-value=9.8 Score=28.73 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=27.2
Q ss_pred ceEEEEcCC---HHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQS---SFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp---~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.+|++.|.. .+|..+.+.|+++|++|+.+...
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 458888974 69999999999999999888765
No 398
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=71.98 E-value=9.4 Score=29.18 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=27.4
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.|+++|.|-.|..+.-+|.++|++|+-|=..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 3899999999999999999999999877666
No 399
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=71.96 E-value=10 Score=28.04 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=25.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCC--CeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNG--HSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~g--heVvgVVTqP 94 (124)
|+|++.|. +.+|..+.+.|++++ ++|++..+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~ 36 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHH 36 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCC
Confidence 67899997 999999999999874 5555544433
No 400
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=71.94 E-value=9.6 Score=32.40 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHh---CCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKK---NGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~---~gheVvgVVTqP 94 (124)
-|++++|+++-|..+++++.+ .|++++|++...
T Consensus 126 rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~ 161 (456)
T TIGR03022 126 RPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTD 161 (456)
T ss_pred ceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCC
Confidence 469999999999999998874 368999999743
No 401
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=71.87 E-value=8 Score=32.94 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhC--CCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKN--GHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~--gheVvgVVTqP 94 (124)
+++||+++|+ .||...++++.+. +++++||+..-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~ 37 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQG 37 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 3589999999 7899888888763 58999998754
No 402
>PRK10307 putative glycosyl transferase; Provisional
Probab=71.84 E-value=7.8 Score=31.47 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 72 FAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 72 FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
......++|.++||+|.-+...|+.|
T Consensus 20 ~~~~l~~~L~~~G~~V~vit~~~~~~ 45 (412)
T PRK10307 20 YTGEMAEWLAARGHEVRVITAPPYYP 45 (412)
T ss_pred hHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 33677788888999998887776543
No 403
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=71.79 E-value=6.3 Score=28.88 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=29.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNG--HSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~g--heVvgVVTqPDKP 97 (124)
|||+++|. |.+|..+.-.|..++ .|++-+=.++++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~ 39 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA 39 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc
Confidence 79999999 999999988888765 5787777776643
No 404
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=71.54 E-value=3.6 Score=37.17 Aligned_cols=67 Identities=19% Similarity=0.103 Sum_probs=48.6
Q ss_pred eeeCceeeEEeeeccccCceeEEecCCCCccCC----CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 26 SFNGNRSLTLVRTICHPTGIVFRRSGSKSSQIH----KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 26 ~~~~~~~~~~~~~~c~~~~~~~~~~~s~~~~M~----~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVT 92 (124)
+.-++..++.++..|.+.+.....|...-+.|. ...+.|+++|.|-.|+-+.-+|..+|++|+.|=.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~ 102 (627)
T PLN02464 32 DKGGGPALDSLRDRIADPNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVER 102 (627)
T ss_pred ccccccccccchhhhhccCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 334556788888888888877555433223343 3447899999999999999999999999655544
No 405
>PLN02858 fructose-bisphosphate aldolase
Probab=71.49 E-value=5.3 Score=39.91 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
+||.|+|.|..|.+..+.|++.||+|.+.=..+++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~ 359 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPT 359 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 68999999999999999999999998765444443
No 406
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=71.46 E-value=9.6 Score=32.69 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
...+||+++|.|..|..+...|.+.||+|+-+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVF 172 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 34579999999999999999999899996554
No 407
>PRK06847 hypothetical protein; Provisional
Probab=71.43 E-value=17 Score=29.10 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=27.9
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+|+++|.|.-|......|.+.|++|+-+=..++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 47899999999999888888888999866654443
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=71.33 E-value=7 Score=33.09 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.6
Q ss_pred ceEEEEcCCHHHHHHHHH-----HHhCC-CeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKL-----LKKNG-HSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLee-----Ll~~g-heVvgVVTqPD 95 (124)
|||++.|-|..|...+.+ |++++ |+|.+|=+.||
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd 40 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPD 40 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 789999987766655544 45555 99999999996
No 409
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=71.11 E-value=11 Score=32.04 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=29.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC---CCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN---GHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~---gheVvgVVTqPDK 96 (124)
-|++++|+++-|..+.++|.++ ||+++|++...+.
T Consensus 129 ~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~ 166 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPD 166 (451)
T ss_pred CcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCc
Confidence 5799999999999999998753 6899999975443
No 410
>PLN02735 carbamoyl-phosphate synthase
Probab=71.09 E-value=9.4 Score=37.23 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=32.4
Q ss_pred CCceEEEEcCCH--HH---------HHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 60 CDLRVAVIGQSS--FA---------AEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 60 k~MKIVFmGTp~--FA---------a~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
.+.||+++|+|. +| +.++++|.+.|++++.|-++||.+.
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvs 622 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVS 622 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCcccc
Confidence 447899999986 44 3477888889999999999999875
No 411
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=71.06 E-value=13 Score=30.26 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
...++|+++|.|..|..+.+.|.+.|++|+-| ...+.+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~li-e~~~~~ 53 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVY-DKLPEP 53 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEE-eCCCCC
Confidence 34579999999999999999998889998754 443333
No 412
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=70.94 E-value=12 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.3
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVV 91 (124)
..+++.|. +.+|..+-++|.++|++|+++-
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEec
Confidence 35777777 8999999999999999998763
No 413
>PRK07201 short chain dehydrogenase; Provisional
Probab=70.93 E-value=7 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=30.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|++.|. +.+|..+.+.|+++|++|+.+...+++
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~ 407 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEA 407 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 56888887 999999999999999999998877654
No 414
>PRK13984 putative oxidoreductase; Provisional
Probab=70.81 E-value=12 Score=33.03 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.+..+|+++|+|..|..+...|.+.|++|+ |+-..+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~-vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVT-VYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEecCCCC
Confidence 345789999999999999999988899976 55555544
No 415
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=70.79 E-value=6.4 Score=31.78 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=24.2
Q ss_pred ceEEEEcCCHHHH-----HHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAA-----EVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa-----~iLeeLl~~gheVvgVVTqP 94 (124)
|||+|+..|..|- ++.++|.++||+|.-+.+..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 6888877765553 56677888999997776654
No 416
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=70.73 E-value=4.9 Score=35.59 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=31.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|.|+|.|.+|......|.++||+|.+.-..+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~ 36 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEK 36 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 57999999999999999999999999887777665
No 417
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=70.67 E-value=9.3 Score=36.69 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.8
Q ss_pred ceEEEEcCCHH-----------HHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSF-----------AAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~F-----------Aa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||.++|+|.. |..++++|.+.||+|++|-.+|+.
T Consensus 8 ~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~ 53 (1066)
T PRK05294 8 KKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPAT 53 (1066)
T ss_pred CEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCccc
Confidence 68999999885 356889998899999999888864
No 418
>PTZ00117 malate dehydrogenase; Provisional
Probab=70.57 E-value=12 Score=30.96 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDKP 97 (124)
+++||+++|.|.+|..+...|...| .+|+-+=..+++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~ 42 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVP 42 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccc
Confidence 4589999999999999877777777 5766666666553
No 419
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=70.47 E-value=14 Score=28.02 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=22.7
Q ss_pred ceEEEEcCC-------------HHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQS-------------SFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp-------------~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|||+++++. .+.....++|.++||+|.-+....+
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 678877653 2245666777778999987665544
No 420
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.47 E-value=13 Score=28.58 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=27.7
Q ss_pred CCceEEEEcCC---HHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQS---SFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp---~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+...+++.|.+ .+|..+.+.|+++|++|+.+....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 33457778864 799999999999999988776654
No 421
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=70.42 E-value=7.4 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCe---------EEEEEcCCCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHS---------VVGVFTVVDKA 97 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~ghe---------VvgVVTqPDKP 97 (124)
|-.++.||+++|.|..|..+++.|...|+- +--++..+|..
T Consensus 7 ~~~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 7 LLSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred HHhCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 445668999999999999999999876421 13366777755
No 422
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=70.36 E-value=6.8 Score=33.62 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=30.2
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDK 96 (124)
..+|+++|+|.+|..+.+.|...| .+|+.+-..+++
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~r 216 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYER 216 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 368999999999999999998888 678777666665
No 423
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.26 E-value=11 Score=31.76 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.3
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
..+|.++|.+..|..+.+.|.++|++|++.=..+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3689999999999999888888999988765443
No 424
>PRK06392 homoserine dehydrogenase; Provisional
Probab=70.26 E-value=13 Score=31.46 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=26.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--------CCeEEEEEcC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN--------GHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~--------gheVvgVVTq 93 (124)
|||+++|-|.+|..+++.|.++ +.+|++|...
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 6899999999999999988763 3678888653
No 425
>PRK06484 short chain dehydrogenase; Validated
Probab=70.16 E-value=9.5 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+++.|. +.+|..+.+.|.++|++|+.+-.++++
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~ 41 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVER 41 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45777777 899999999999999999888776654
No 426
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=69.61 E-value=7.8 Score=32.86 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=26.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCC----CeEEEEEc
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNG----HSVVGVFT 92 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~g----heVvgVVT 92 (124)
||++.|.|.+|..+|+.|.+++ ++|++|.-
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 6899999999999999998753 79999864
No 427
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=69.51 E-value=8.7 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred EEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
+++.|. +.+|..+.++|+++|++|+.+-..+
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 34 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNE 34 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 677776 9999999999999999988876543
No 428
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=69.48 E-value=6.9 Score=33.50 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCC-eEEEEEcCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGH-SVVGVFTVVDK 96 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gh-eVvgVVTqPDK 96 (124)
...+|+++|+|.+|..++..|...|+ +|+.+-..+++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~r 218 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLER 218 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 34789999999999999999988886 67666555554
No 429
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=69.21 E-value=16 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=23.4
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCC-eEEEEEcCCC
Q psy16773 64 VAVIG-QSSFAAEVYKLLKKNGH-SVVGVFTVVD 95 (124)
Q Consensus 64 IVFmG-Tp~FAa~iLeeLl~~gh-eVvgVVTqPD 95 (124)
+++.| ++.+|..+.++|.++|+ .|+.+...++
T Consensus 3 ~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~ 36 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGP 36 (180)
T ss_pred EEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 45555 49999999999998886 5666655544
No 430
>KOG1399|consensus
Probab=69.18 E-value=9.6 Score=33.78 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=30.5
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
+.+++++|.|.-|...+++|+++|++++..=...| .++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~-iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD-IGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC-ccc
Confidence 47899999999999999999999998875544443 443
No 431
>KOG0409|consensus
Probab=69.17 E-value=7.2 Score=34.08 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
...||.|+|.|..|...-..|++.||.|+.-=...|+-
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~ 71 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC 71 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH
Confidence 35899999999999999999999999887655555543
No 432
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=69.08 E-value=11 Score=31.66 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEE
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVV 91 (124)
|+++...|+++|.|.-|..+-..|.+.|++|+-|=
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE 35 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE 35 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 45556789999999999999888988899887764
No 433
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=68.98 E-value=10 Score=32.14 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=28.1
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC---CCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN---GHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~---gheVvgVVTqP 94 (124)
-|++++|+++-|..++++|.++ ||+++|++...
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~ 161 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDR 161 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCC
Confidence 5799999999999999999753 68999999743
No 434
>PRK08339 short chain dehydrogenase; Provisional
Probab=68.95 E-value=9 Score=29.55 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=27.5
Q ss_pred eEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 63 RVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 63 KIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.+++.|. +.+|..+-++|+++|++|+.+..+++
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~ 43 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSRNEE 43 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4677776 89999999999999999988876554
No 435
>PRK07588 hypothetical protein; Provisional
Probab=68.77 E-value=15 Score=29.91 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=28.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|+|+++|.|..|..+--.|.++|++|+-+=..++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999888888888999877766654
No 436
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.68 E-value=9.9 Score=29.37 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCC-eEEEE
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGH-SVVGV 90 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gh-eVvgV 90 (124)
..||.++|.+..|.++++.|+..|. ++.-+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lv 49 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIV 49 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4789999999999999999999884 45433
No 437
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=68.47 E-value=7.9 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=31.3
Q ss_pred EEE-cCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCCCCc
Q psy16773 65 AVI-GQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDI 102 (124)
Q Consensus 65 VFm-GTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g~~~ 102 (124)
++. |||-+|...-..|.++||+|.-+.++|++.....+
T Consensus 2 liTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~ 40 (297)
T COG1090 2 LITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH 40 (297)
T ss_pred eEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC
Confidence 344 55999999999999999999999999998765443
No 438
>PRK00955 hypothetical protein; Provisional
Probab=68.26 E-value=7.1 Score=36.32 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=33.3
Q ss_pred cccCceeEEecCCCCccCCCCCceEEEEcCCHHHHHHHHHHHh-CCCeEEEEEcCCCCC
Q psy16773 40 CHPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKK-NGHSVVGVFTVVDKA 97 (124)
Q Consensus 40 c~~~~~~~~~~~s~~~~M~~k~MKIVFmGTp~FAa~iLeeLl~-~gheVvgVVTqPDKP 97 (124)
-.+++.++++-+ +++=-|.||..++-.+++ +||+| ||+.|||-.
T Consensus 11 w~~~d~i~v~gd-------------ayvdhp~fg~a~i~r~L~~~G~~v-~ii~qp~~~ 55 (620)
T PRK00955 11 WDELDFILVTGD-------------AYVDHPSFGTAIIGRVLEAEGFRV-GIIAQPNWR 55 (620)
T ss_pred CCccCEEEEeCc-------------ccccCCccHHHHHHHHHHHCCCEE-EEecCCCcC
Confidence 345666666654 455569999999998886 69998 999999854
No 439
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=68.21 E-value=11 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
..+.|+++|.|..|...--.|.++|++|+-|=..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 44789999999999988878888899987776554
No 440
>PRK06128 oxidoreductase; Provisional
Probab=68.19 E-value=13 Score=29.25 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=27.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+|++.|. +.+|..+.+.|+++|++|+.+...+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 46888887 9999999999999999998766544
No 441
>KOG0399|consensus
Probab=68.15 E-value=10 Score=39.22 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=32.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
.||+++|+|.-|..+-+.|.+.||.| -|+-+.||+.+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v-~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTV-TVYERSDRVGG 1822 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEE-EEEEecCCcCc
Confidence 58999999999999999999999865 58888888765
No 442
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.76 E-value=12 Score=31.41 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=27.8
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.||.|+|-|.-|...++.|.++|++|.+.=.++
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 579999999999999988888899998865443
No 443
>PRK12831 putative oxidoreductase; Provisional
Probab=67.74 E-value=12 Score=32.27 Aligned_cols=32 Identities=31% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
...++|+++|+|..|..+...|.+.||+|+-+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 34589999999999999999999899997443
No 444
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=67.67 E-value=9.5 Score=30.34 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=28.0
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
..+++++|+|..|..+...|.+.|++|..+-..++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~ 151 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVS 151 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35799999999999999999988887765544433
No 445
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=67.64 E-value=11 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=25.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCC---CeEEEE
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNG---HSVVGV 90 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~g---heVvgV 90 (124)
++||++.|.|.+|..+|+.|.+++ .+|++|
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaI 92 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAI 92 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 479999999999999999988763 477766
No 446
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.50 E-value=15 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.4
Q ss_pred CceEEEEcC-CHHHHHHHHHHHhCC-------CeEEEEEcCCC
Q psy16773 61 DLRVAVIGQ-SSFAAEVYKLLKKNG-------HSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGT-p~FAa~iLeeLl~~g-------heVvgVVTqPD 95 (124)
++||++.|+ |.+|..+...|+.++ .+|+.+-..++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc
Confidence 479999998 999999999988743 48999888664
No 447
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=67.33 E-value=15 Score=30.35 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCC--eEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGH--SVVGV 90 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gh--eVvgV 90 (124)
++.||+++|.|.-|..+.++|.++++ +|+-|
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li 34 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLF 34 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEe
Confidence 34589999999999999999988776 45444
No 448
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=67.32 E-value=17 Score=32.72 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=29.4
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
...||+++|+|..|..+...|.+.||+|+ |+-..+++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecCCCC
Confidence 45799999999999999999999999964 44444443
No 449
>PRK10537 voltage-gated potassium channel; Provisional
Probab=67.15 E-value=10 Score=32.82 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=27.2
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVT 92 (124)
-.|+++|.+++|..+.++|.++|++++.|..
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~ 271 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVP 271 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEEC
Confidence 4699999999999999999988888877763
No 450
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=67.13 E-value=13 Score=30.74 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
+..||++-|-|.+|....+.|.+.|..|++|--.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4579999999999999999999999999999763
No 451
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=67.12 E-value=8.5 Score=34.22 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=25.5
Q ss_pred CCceEEEEcC-CHHHHHHHHHHHhCCCeEE
Q psy16773 60 CDLRVAVIGQ-SSFAAEVYKLLKKNGHSVV 88 (124)
Q Consensus 60 k~MKIVFmGT-p~FAa~iLeeLl~~gheVv 88 (124)
..|||++.|. |.+|..+.+.|.++||+|.
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~ 408 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYE 408 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEE
Confidence 3489999997 9999999999998899983
No 452
>PRK05868 hypothetical protein; Validated
Probab=67.06 E-value=19 Score=29.76 Aligned_cols=35 Identities=26% Similarity=0.108 Sum_probs=29.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
++|+++|.|..|..+--.|.++|++|+-+=..|+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 68999999999998887888889998777666653
No 453
>PRK05872 short chain dehydrogenase; Provisional
Probab=67.02 E-value=13 Score=29.36 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=28.9
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. +.+|..+.+.|.++|++|+.+-..++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 44 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEA 44 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46888887 99999999999999999988876654
No 454
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.00 E-value=11 Score=31.79 Aligned_cols=32 Identities=28% Similarity=0.181 Sum_probs=27.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
||.|+|.|..|..+.+-|.++||+|.+.=.++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 68999999999998888888999998765543
No 455
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=66.99 E-value=11 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=32.2
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~ 98 (124)
||.+..-|++|.++++++.+.|+++++|.+.+|+..
T Consensus 1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s 36 (1143)
T TIGR01235 1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLS 36 (1143)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccC
Confidence 577788899999999999999999999999999743
No 456
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=66.93 E-value=17 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.8
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.++++.|. +.+|..+.+.|+++|++|+.+.++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~ 39 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNS 39 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 46788886 999999999999999999866554
No 457
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=66.93 E-value=12 Score=31.67 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 59 KCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 59 ~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
...+||+++|.|..|..+...|.+.||+|+-+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 34579999999999999988898889998654
No 458
>PRK05920 aromatic acid decarboxylase; Validated
Probab=66.93 E-value=15 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.5
Q ss_pred ceEEEEcCCHHHH----HHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAA----EVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa----~iLeeLl~~gheVvgVVTqPDK 96 (124)
+||++.=||.+|+ .++++|.+.|++|..|+|..-.
T Consensus 4 krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~ 42 (204)
T PRK05920 4 KRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQ 42 (204)
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 6777766677776 4567787889999999997643
No 459
>PLN02928 oxidoreductase family protein
Probab=66.90 E-value=12 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=27.8
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVT 92 (124)
..+|+++|.|.+|..+.+.|..-|.+|+++=.
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr 190 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRR 190 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECC
Confidence 46899999999999999988877999988744
No 460
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=66.81 E-value=9.5 Score=30.63 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=29.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC-CeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG-HSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g-heVvgVVTqPDKP 97 (124)
.+++++|+|..|..++..|.+.| .+|.-+-+.+++.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a 160 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERA 160 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 57999999999999999999888 6777776666543
No 461
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=66.66 E-value=15 Score=30.91 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=26.7
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhC-CCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKN-GHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~-gheVvgVVTq 93 (124)
|||+++|. |-.|..+++.|.+. ++++++++..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s 34 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSS 34 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEecc
Confidence 68999997 99999999988865 5788887653
No 462
>PRK08589 short chain dehydrogenase; Validated
Probab=66.59 E-value=19 Score=27.81 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=27.5
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTq 93 (124)
.++++.|. +.+|..+.+.|+++|++|+.+-..
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 46777887 999999999999999999988655
No 463
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=66.54 E-value=11 Score=31.99 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCCceEEEEcC-CHHHHHHHHHHHhCCCe
Q psy16773 59 KCDLRVAVIGQ-SSFAAEVYKLLKKNGHS 86 (124)
Q Consensus 59 ~k~MKIVFmGT-p~FAa~iLeeLl~~ghe 86 (124)
..++||+++|+ |..|.++++.|.+++|.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 34589999999 99999999988877773
No 464
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.39 E-value=8 Score=31.44 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=30.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+++.|. +.+|..+.++|.++|++|+.+..++++
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~ 89 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDK 89 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence 45777887 899999999999999999999887764
No 465
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=66.33 E-value=16 Score=27.84 Aligned_cols=30 Identities=7% Similarity=0.196 Sum_probs=25.2
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVV 91 (124)
.+|++.|. +.+|..+.++|+++|++|+.+.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 39 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTY 39 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 35677777 9999999999999999987764
No 466
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=66.22 E-value=20 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=28.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
..+|+++|.|.+|..+.+.|..-|++|.++=..+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999998887799998875443
No 467
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=66.20 E-value=13 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=21.4
Q ss_pred ceEEEEcCCHHH-----HHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFA-----AEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FA-----a~iLeeLl~~gheVvgVVTqPD 95 (124)
|||.|+..+.-| ....++|.++||||..+ |.++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv-~~~~ 38 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWL-GTKR 38 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEE-eCCC
Confidence 577776553222 24677788889998887 5544
No 468
>PRK06126 hypothetical protein; Provisional
Probab=66.12 E-value=20 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 58 HKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 58 ~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.....+|+++|.|..|...--.|.++|++|+-+=..++
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 33457899999999999887778888999877776654
No 469
>PRK07041 short chain dehydrogenase; Provisional
Probab=66.09 E-value=6.3 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 68 GQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 68 GTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
|++.+|..+.++|+++|++|+++..++++
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~ 33 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDR 33 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 44899999999999999999888776543
No 470
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.01 E-value=18 Score=30.29 Aligned_cols=33 Identities=27% Similarity=0.165 Sum_probs=28.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+|+++|.+..|..+.+.|.++|++|++.-.++
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 579999999999999888989999998876554
No 471
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=65.82 E-value=13 Score=30.86 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=28.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP 97 (124)
.+||+++|+|.+|..+.-.|+..+ -|++.+=..+++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~ 41 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKL 41 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHH
Confidence 379999999999999888887665 3677776555543
No 472
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.67 E-value=16 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.161 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
.+|+++|+|..|.++..+|.+.+.+|..+...+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 589999999999999999888788888777665
No 473
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.65 E-value=14 Score=32.48 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
...+|+++|.|..|..+...|.+.|++|+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~ 166 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIF 166 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 3478999999999999999998889996653
No 474
>PRK06444 prephenate dehydrogenase; Provisional
Probab=65.42 E-value=13 Score=29.26 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=23.4
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVV 88 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVv 88 (124)
|||+++|. |..|..+-+.+.+.||+|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 68999999 9999988887777899984
No 475
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.28 E-value=13 Score=28.19 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=25.1
Q ss_pred eEEEEcCCHHHHHHHHHHHhCCCeEEEEE
Q psy16773 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91 (124)
Q Consensus 63 KIVFmGTp~FAa~iLeeLl~~gheVvgVV 91 (124)
+|+++|.|.-|..+...|.+.|++|+-+=
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie 30 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIE 30 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 68999999999999999988899976554
No 476
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=65.23 E-value=11 Score=29.94 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=28.3
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC--CCeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN--GHSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~--gheVvgVVTqPDKP~ 98 (124)
|||.+.|.+.-. .+++.|.+. ||+|+++-+.|+.|.
T Consensus 2 ~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~ 39 (326)
T PRK12767 2 MNILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPA 39 (326)
T ss_pred ceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchh
Confidence 899999986544 677888776 599999988877663
No 477
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=65.05 E-value=16 Score=29.95 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=28.0
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVV 94 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqP 94 (124)
-+|+++|.|..|.++..+|.+.|.+|.-|-..+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 589999999999999999998899987665443
No 478
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=65.02 E-value=12 Score=32.82 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=25.6
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEE
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgV 90 (124)
|+|.+-|. |-+|.-...+|+++||+|+-+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~ 30 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVL 30 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEE
Confidence 67888877 999999999999999999766
No 479
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.97 E-value=12 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCceEEEEcCCHHHHH-----HHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAE-----VYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~-----iLeeLl~~gheVvgVVTqPDKP 97 (124)
..|||.+-|-|..|.. +.+.|.++||.|.|++|..=+-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 4599999999887773 3345556789999999987653
No 480
>PLN02985 squalene monooxygenase
Probab=64.97 E-value=25 Score=31.00 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 57 M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
+....++|+++|.|-.|...--.|.++|++|.-+=..++.+
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~ 79 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREP 79 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCC
Confidence 34455789999999999988888888899988777665433
No 481
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=64.96 E-value=16 Score=29.78 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.6
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCC--CeEEEEEcCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNG--HSVVGVFTVVDKAN 98 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~g--heVvgVVTqPDKP~ 98 (124)
|||+++|.|--|..+-..|.++| ++|+ |+=.-|++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~-vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADIT-LLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEE-EEEcCCCCc
Confidence 57999999999999988898877 7876 665555554
No 482
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=64.94 E-value=7.2 Score=35.33 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.1
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
..+|+++|.|.+|..+.+.|.++|++++.|=.+|++-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v 436 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHI 436 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHH
Confidence 4689999999999999999998899999998888864
No 483
>PRK12747 short chain dehydrogenase; Provisional
Probab=64.74 E-value=18 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=26.1
Q ss_pred ceEEEEcC-CHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 62 LRVAVIGQ-SSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 62 MKIVFmGT-p~FAa~iLeeLl~~gheVvgVVT 92 (124)
..+++.|. +.+|..+.++|.++|++|+.+..
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~ 36 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYG 36 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 46788887 99999999999999999877643
No 484
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=64.43 E-value=17 Score=26.61 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred EEEEc-CCHHHHHHHHHHHhCCCeEEEEEc
Q psy16773 64 VAVIG-QSSFAAEVYKLLKKNGHSVVGVFT 92 (124)
Q Consensus 64 IVFmG-Tp~FAa~iLeeLl~~gheVvgVVT 92 (124)
+++.| ++.+|..+.+.|+++|++|+++..
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 3 ALVTGGMGGIGTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 45666 599999999999999999988876
No 485
>PRK13243 glyoxylate reductase; Reviewed
Probab=64.23 E-value=16 Score=30.53 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=28.3
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTV 93 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTq 93 (124)
...+|.++|.|.+|..+-+.|..-|++|.++-..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3478999999999999999888889999766443
No 486
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=64.23 E-value=16 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=26.5
Q ss_pred EEEEcC-CHHHHHHHHHHHhCC--CeEEEEEcCCC
Q psy16773 64 VAVIGQ-SSFAAEVYKLLKKNG--HSVVGVFTVVD 95 (124)
Q Consensus 64 IVFmGT-p~FAa~iLeeLl~~g--heVvgVVTqPD 95 (124)
|+++|+ |.+|...|+-+.+.. ++|+|+..+-+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n 35 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSN 35 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESST
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCC
Confidence 578898 999999999877654 89999988554
No 487
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=64.16 E-value=23 Score=28.83 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=29.7
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
+++|+++|.|.-|..+--.|.++|++|+-+=..|+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 47899999999999888888888999877776665
No 488
>PLN02459 probable adenylate kinase
Probab=64.14 E-value=5.6 Score=33.05 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=25.6
Q ss_pred ccCCCCCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 55 SQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 55 ~~M~~k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
|.|+.+.|+|+|+|.|.-|.-.+-+.+.+.|.+.-|
T Consensus 23 ~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~i 58 (261)
T PLN02459 23 SLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHI 58 (261)
T ss_pred CccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 346667799999999999998886665543444433
No 489
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=64.14 E-value=15 Score=31.39 Aligned_cols=35 Identities=31% Similarity=0.599 Sum_probs=26.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHh----CCCeEEEEEcCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKK----NGHSVVGVFTVVDKA 97 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~----~gheVvgVVTqPDKP 97 (124)
-|++++|+++-|..+ +++.+ .|++++|++...|.+
T Consensus 125 rrvLIIGag~~~~~L-~~l~~~~~~~g~~vVGfi~~dd~~ 163 (442)
T TIGR03013 125 RRILVLGTGPRAREI-ARLRRSSDRRGHEIVGFVPLPDEP 163 (442)
T ss_pred CcEEEEECCHHHHHH-HHHHHhCccCCeEEEEEEcCCccc
Confidence 469999999988888 66653 268999999644433
No 490
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.11 E-value=17 Score=30.63 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.||.|+|-|-.|..+.+.|.++|++|.+.-..++
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5899999999999988888888999988775544
No 491
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=64.07 E-value=9.1 Score=34.05 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
.||+|+|.|..|..+-..++.+||+|+.+=..+++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 47999999999999999999999999887666654
No 492
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=63.97 E-value=24 Score=34.03 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCceEEEEcCCHH-----------HHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSF-----------AAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~F-----------Aa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
.+.||.++|+|.. +++++++|.+.||+++.|=.+|+..
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetv 601 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETV 601 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3468999999763 3577899988999999999888764
No 493
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.94 E-value=15 Score=27.80 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=27.3
Q ss_pred ceEEEEcC-C-HHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQ-S-SFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGT-p-~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
.++++.|. + .+|..+.+.|+++|++|+.+-..++
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~ 53 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHER 53 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 56888996 5 6999999999999999877655443
No 494
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.91 E-value=21 Score=32.18 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKA 97 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP 97 (124)
...||+++|+|..|..+...|.+.||+|+ |+-..+++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vt-v~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVD-VFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEE-EEeCCCCC
Confidence 45899999999999999999998999965 44444443
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=63.79 E-value=11 Score=31.03 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=30.4
Q ss_pred CceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCC
Q psy16773 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96 (124)
Q Consensus 61 ~MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDK 96 (124)
..+++++|.|.+|..+.+.|...|++|..+-+.+++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~ 186 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD 186 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 368999999999999999998889998877666653
No 496
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=63.67 E-value=15 Score=31.06 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=24.0
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCe
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHS 86 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~ghe 86 (124)
+..||+++|.|.+|..+++.|...|+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg 49 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIG 49 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence 346899999999999999999999873
No 497
>KOG0685|consensus
Probab=63.67 E-value=16 Score=33.50 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCCCCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPDKP~g 99 (124)
-||+++|+|--|..+-..|+++|++-+-|+=.-||..|
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 58999999999999999999999999999999998754
No 498
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=63.50 E-value=13 Score=31.93 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.4
Q ss_pred ceEEEEcCCHHHHHHHHHHHhC----CCeEEEE
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKN----GHSVVGV 90 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~----gheVvgV 90 (124)
+||++.|.|.+|..+|+.|.++ +.+|++|
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvai 34 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAI 34 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEe
Confidence 7999999999999999999874 3566655
No 499
>PRK07538 hypothetical protein; Provisional
Probab=63.49 E-value=25 Score=29.08 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.9
Q ss_pred ceEEEEcCCHHHHHHHHHHHhCCCeEEEEEcCCC
Q psy16773 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95 (124)
Q Consensus 62 MKIVFmGTp~FAa~iLeeLl~~gheVvgVVTqPD 95 (124)
|+|+++|.|.-|..+-..|.++|++|+-+=..+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999888888888999776665553
No 500
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.45 E-value=15 Score=33.31 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCceEEEEcCCHHHHHHHHHHHhCCCeEEEE
Q psy16773 60 CDLRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90 (124)
Q Consensus 60 k~MKIVFmGTp~FAa~iLeeLl~~gheVvgV 90 (124)
..+||+++|.|..|..+...|.+.||+|+-+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 3479999999999999999999889997754
Done!