RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16773
(124 letters)
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 56.1 bits (136), Expect = 1e-10
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 41 HPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANRE 100
H +G+ + ++ +++AVIGQS F EVY L+K GH VVGVFTV DK +
Sbjct: 7 HSSGVDLG-----TENLYFQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKA 61
Query: 101 DIV 103
D +
Sbjct: 62 DPL 64
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N
biosynthesis, methyltransferase; HET: FON U5P; 1.2A
{Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Length = 305
Score = 33.2 bits (77), Expect = 0.011
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99
++ V + L G+ + +FT D
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGE 38
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP
UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2
c.65.1.1
Length = 660
Score = 33.1 bits (76), Expect = 0.014
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99
++ V + L G+ + +FT D
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGE 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.027
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 33/139 (23%)
Query: 2 FSVLSNLPSKFTVKSAFLVSILTWSFNGNRSLTLVRTICHPTGIVFRRSGSKSSQIHKC- 60
PS T L +N N+ V R ++ +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRL---YNDNQVF--------AKYNVSRLQ--PYLKLRQAL 144
Query: 61 -DLR----VAV-----IGQSSFAAEV---YKLLKKNGHSVVGVF--TVVDKANREDIVDE 105
+LR V + G++ A +V YK+ K +F + + + E +++
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWLNLKNCNSPETVLEM 201
Query: 106 MYSLWRVALTATFTSGPKR 124
+ L + +TS
Sbjct: 202 LQKLLYQ-IDPNWTSRSDH 219
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD;
1.90A {Archaeoglobus fulgidus}
Length = 236
Score = 32.0 bits (72), Expect = 0.028
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99
V +IG + + + L++NG + + V + +
Sbjct: 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK 38
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 31.1 bits (71), Expect = 0.043
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 57 IHKCDLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEM 106
VIG + + + L G V+ VDK ++ ++ +
Sbjct: 2 TENGRYEYIVIGSEAAGVGLVRELTAAGKKVL----AVDK--SKEKIELL 45
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 31.7 bits (71), Expect = 0.044
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 61 DLRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDE 105
D + +IG + A + K L + G +V V++ + + ++ +
Sbjct: 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYS-RTEESARELAQK 53
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.1 bits (71), Expect = 0.046
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEM 106
+ AVIG F + K L + GH V+ VD E+ V+
Sbjct: 8 QFAVIGLGRFGGSIVKELHRMGHEVL----AVDI--NEEKVNAY 45
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like
family; putative rossmann-like dehydrogenase, structural
genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Length = 232
Score = 31.5 bits (71), Expect = 0.049
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIV 103
LRV + S + + L GH V + + ++V
Sbjct: 7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVL-HAPEDIRDFELV 47
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 30.4 bits (69), Expect = 0.11
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 75 EVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSL 109
E Y+ L++ + +DK V +
Sbjct: 113 EFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAE 147
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta structure, cytosol; HET: PGE; 2.40A
{Bacillus anthracis}
Length = 317
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
++V +G F+ V + L ++G+ V+GV T D+
Sbjct: 5 IKVVFMGTPDFSVPVLRRLIEDGYDVIGVVTQPDR 39
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA,
translation initiation; 2.00A {Escherichia coli} SCOP:
b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 29.4 bits (67), Expect = 0.21
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFT 92
LR+ G FAA L +GH+VVGVFT
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFT 34
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
L++ G FA + L + H V+ V+T D+
Sbjct: 3 LKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDR 37
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid; 1.89A
{Vibrio cholerae}
Length = 318
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDK 96
LR+ G FAA L + H ++ V+T ++
Sbjct: 8 LRIVFAGTPDFAARHLAALLSSEHEIIAVYTQPER 42
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 29.5 bits (67), Expect = 0.26
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 70 SSFAAEVYKLLKKNGHSVVGVF 91
SS +A LL++ G+ V G+F
Sbjct: 30 SSVSA---WLLQQQGYQVEGLF 48
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat
methyltransferase; alpha-beta, beta barrel, structural
genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus
pneumoniae}
Length = 376
Score = 28.7 bits (65), Expect = 0.41
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 70 SSFAAEVYKLLKKNGHSVVGVF 91
SS A LLK+ G+ V+G+F
Sbjct: 22 SSVTA---LLLKEQGYDVIGIF 40
>2a13_A AT1G79260; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG, unknown
function; HET: MSE; 1.32A {Arabidopsis thaliana} SCOP:
b.60.1.8 PDB: 2q4n_A 3emm_A*
Length = 166
Score = 28.3 bits (63), Expect = 0.43
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 25 WSFNGNRSLTLVRTICHPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEV---YKL 79
+ + S+ +V I TG+V + G+ + L+ ++G +S E+ ++L
Sbjct: 82 FRPRPDGSIEVV--IAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFEL 137
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD;
1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 28.4 bits (63), Expect = 0.55
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 62 LRVAVIGQSSFAAEVY-KLLKKNGHSVVGVFTVVDKANREDIVDE 105
A+IG + + A + + +K G+ +V + + D D +
Sbjct: 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISP 48
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.44A {Corynebacterium diphtheriae}
Length = 180
Score = 27.2 bits (61), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 63 RVAVI------GQSSFAAEVYKLLKKNGHSVVGVFTVVD 95
+V V+ G S K L++ G VVGV TVVD
Sbjct: 116 KVLVVEDTTTTGNSPL--TAVKALREAGAEVVGVATVVD 152
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90
LR +IG + L +K G V+ +
Sbjct: 163 LRSTIIGGF-----LANLYEKLGWEVIRM 186
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 26.8 bits (59), Expect = 1.7
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 62 LRVAVIGQSSFAAEVY-KLLKKNGHSVVGVFTVVDKANREDIVDE 105
R A+ G + + A + K +K+ G +V D
Sbjct: 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFP 48
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 26.9 bits (60), Expect = 1.7
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 11/63 (17%)
Query: 63 RVAVI------GQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWRVALTA 116
+I G S E ++L+K G V ++D RE + + L +
Sbjct: 113 TCLIIEDVVTSGSSVL--ETVEVLQKEGLKVTDAIVLLD---REQGGKDKLQAHGIRLHS 167
Query: 117 TFT 119
T
Sbjct: 168 VCT 170
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 27.0 bits (60), Expect = 1.8
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGV 90
R A++G + ++L+ G+ V
Sbjct: 139 ARNAILGDV-----MARILRFLGYEVEVQ 162
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 26.8 bits (59), Expect = 1.9
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 62 LRVAVIGQ----SSFAAEVYKLLKKNGHSVVGVFTVVDKANRE 100
LRV IG + A+ L+ G VV + E
Sbjct: 1 LRVGFIGFGEVAQTLAS----RLRSRGVEVVTSLEGRSPSTIE 39
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 26.9 bits (60), Expect = 1.9
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVG 89
LR +G + + ++L G V+
Sbjct: 123 LRNIALGDA-----IARILAYAGREVLV 145
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 26.5 bits (59), Expect = 2.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVF 91
V +IG A V + L+ G +V +
Sbjct: 14 GVVIIGGGGHAKVVIESLRACGETVAAIV 42
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 26.3 bits (59), Expect = 2.9
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 62 LRVAVI--GQSS-------FAAEVYKLLKKNGHSVVGV-----FTVVDKANREDIV 103
+R+ VI G SS E+ L KN + +V + +++KA D
Sbjct: 4 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFA 59
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death
domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Length = 85
Score = 25.2 bits (55), Expect = 3.4
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 76 VYKLLK----KNGHSVVGVFTVVDKANREDIVDEMYS 108
V LL ++ ++ + + + R DIV+ + S
Sbjct: 48 VRALLASWGAQDSATLDALLAALRRIQRADIVESLCS 84
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold,
glycosyltransferase, magnesium, pyrimidine biosynthesis,
structural genomics; 1.80A {Aeropyrum pernix}
Length = 178
Score = 25.7 bits (57), Expect = 3.7
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 63 RVAVI------GQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWRVALTA 116
RV V+ G S + ++L+ NG++V +VD R + E+ + V L +
Sbjct: 108 RVVVVDDVATTGTSIA--KSIEVLRSNGYTVGTALVLVD---RGEGAGELLARMGVRLVS 162
Query: 117 TFT 119
T
Sbjct: 163 VAT 165
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 3.9
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 63 RVAVI---GQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMY--------SLWR 111
+ +I G+ S AEV + L + G VV V T D +Y +L
Sbjct: 477 KYVLITGAGKGSIGAEVLQGLLQGGAKVV-VTTSRFSKQVTDYYQSIYAKYGAKGSTLIV 535
Query: 112 V 112
V
Sbjct: 536 V 536
>2raa_A Pyruvate synthase subunit PORC; TM0015, pyruvate oxidoreductase
subunit PORC (EC 1.2.7.1), S genomics; HET: MSE; 2.12A
{Thermotoga maritima MSB8}
Length = 204
Score = 25.3 bits (56), Expect = 5.1
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 54 SSQIHKCDLRVAVIGQSSFAAEVYKLLKKNG 84
S + D+ V VI ++ + + + L ++G
Sbjct: 79 RSAVENPDV-VVVIDETLLSPAIVEGLSEDG 108
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 25.1 bits (55), Expect = 7.0
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 75 EVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYS 108
E ++++ +G ++ GV +D R++ S
Sbjct: 135 ESMEIIQAHGATLAGVLISLD---RQERGRGEIS 165
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside
phosphorylase I (NP-I) family, transferase; HET: ADN
GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A*
1xe3_A 3uay_A* 3uaz_A*
Length = 235
Score = 24.8 bits (54), Expect = 8.2
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKANREDIVDE 105
+Y L K G + + V TV D +
Sbjct: 182 TTALYTLAAKYGVNALSVLTVSDHIFTGEETTS 214
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function,
protease, thermophilic, SELF-compartmentalising,
hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A
2pe3_A
Length = 354
Score = 25.0 bits (55), Expect = 8.7
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 73 AAEVYKLLKKNGHSVVGVFTV 93
E + L + + V +V
Sbjct: 193 MIEAARQLGDHEADIYIVGSV 213
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax,
nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
PDB: 3mbo_A*
Length = 394
Score = 25.0 bits (55), Expect = 9.7
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 68 GQSSFAAEVYKLLKKNGHSVVGVFT 92
G E+ K L + GH + T
Sbjct: 28 GSGVVGTELGKQLAERGHEIH-FIT 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.389
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,779,255
Number of extensions: 94369
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 49
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)