RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16773
(124 letters)
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 50.0 bits (118), Expect = 4e-09
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEM 106
+++AVIGQS F EVY L+K GH VVGVFTV DK + D +
Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLE 45
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase
{Escherichia coli [TaxId: 562]}
Length = 206
Score = 42.3 bits (98), Expect = 3e-06
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKAN 98
LR+ G FAA L +GH+VVGVFT D+
Sbjct: 4 LRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPA 40
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 203
Score = 40.8 bits (94), Expect = 1e-05
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDI 102
++ V + L G+ + +FT D +
Sbjct: 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAF 41
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 29.6 bits (66), Expect = 0.077
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKAN-REDIVDEMYSLWRVA 113
+ LL + +V G+ +V+ E +VDE SL ++
Sbjct: 138 INGMINLLDEFNANVAGIGVLVEAEGVDERLVDEYMSLLTLS 179
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 348
Score = 29.1 bits (64), Expect = 0.13
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95
LR +IG + L +K G V+ + + D
Sbjct: 28 LRSTIIGGF-----LANLYEKLGWEVIRMNYLGD 56
>d2a13a1 b.60.1.8 (A:14-166) Hypothetical protein At1g79260 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 153
Score = 28.2 bits (63), Expect = 0.20
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 20/96 (20%)
Query: 25 WSFNGNRSLTLVRTICHPTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVYKLLKKNG 84
+ + S+ +V I TG+V + G+ + L+ ++G +S E+ +
Sbjct: 69 FRPRPDGSIEVV--IAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISRE----- 121
Query: 85 HSVVGVFTVVDKANREDIVDEMYSLWRVALTATFTS 120
F +VD Y + T
Sbjct: 122 ------FELVDG-------KLSYVVRMSTTTNPLQP 144
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 28.1 bits (62), Expect = 0.24
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKAN---REDIVDEMYSL 109
AA +L+++ +++ V++ R + +++L
Sbjct: 138 AAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNAPVFTL 177
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 28.4 bits (62), Expect = 0.26
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95
LR +G + + ++L G V+ + + D
Sbjct: 27 LRNIALGDA-----IARILAYAGREVLVLNYIDD 55
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 27.3 bits (60), Expect = 0.38
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEM 106
+ K++ + G VV V + VD +
Sbjct: 135 MRAMEKMVLRAGGHVVARLAVFRQGTPGLAVDTV 168
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 27.3 bits (59), Expect = 0.49
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 63 RVAVI-GQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEM 106
RVA++ G + + L GH + V + E E
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEI--VVGSRREEKAEAKAAEY 44
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 189
Score = 27.1 bits (59), Expect = 0.55
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVV 88
+ V G +F + +L K V
Sbjct: 9 KAVVFGSGAFGTALAMVLSKKCREVC 34
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 26.9 bits (58), Expect = 0.65
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMY 107
V+++G + + + L NG+ V T D + I
Sbjct: 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGRE 46
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.0 bits (56), Expect = 0.92
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVG 89
+ AVIG F + K L + GH V+
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMGHEVLA 28
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 85
Score = 25.6 bits (56), Expect = 1.00
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 81 KKNGHSVVGVFTVVDKANREDIVDEMYS 108
++ ++ + + + R DIV+ + S
Sbjct: 57 AQDSATLDALLAALRRIQRADIVESLCS 84
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 26.2 bits (57), Expect = 1.0
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKAN---REDIVD-EMYSL 109
+LL + V+ ++V+ + RE + +SL
Sbjct: 134 MNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSL 174
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 26.3 bits (56), Expect = 1.0
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 63 RVAVIGQSSF-AAEVYKLLKKNGHSVVGV-FTVVDKANREDI 102
++ + G + E+ K LK V+ +D N +
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAV 44
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 26.1 bits (57), Expect = 1.2
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKAN---REDIVDEMYSL 109
A + ++K+ G S+ G+ V++K+ R+++V Y +
Sbjct: 133 AHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRV 172
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 25.6 bits (55), Expect = 1.5
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGV 90
AV+G + L G SV+
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAW 30
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 25.5 bits (54), Expect = 1.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGV 90
++ V+G A + L++ GH ++GV
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGV 29
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 25.3 bits (54), Expect = 2.1
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLW 110
++ V+G + L K GH V G V ++V+ S++
Sbjct: 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIF 49
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 25.1 bits (54), Expect = 2.1
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 12/39 (30%)
Query: 63 RVAVIGQSS------------FAAEVYKLLKKNGHSVVG 89
+V V+G S E+ + L K G+ V
Sbjct: 3 KVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGYLVFN 41
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 24.8 bits (53), Expect = 2.5
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANR 99
LRV IG A + L+ G VV +
Sbjct: 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTI 38
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 24.9 bits (53), Expect = 2.6
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 63 RVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWR 111
+ + G + K L + GH + V +DK + E+ +L
Sbjct: 2 YIIIAGIGRVGYTLAKSLSEKGHDI--VLIDIDKDICKKASAEIDALVI 48
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 24.9 bits (54), Expect = 3.0
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 70 SSFAAEVYKLLKKNGHSVVGVFTVVDK 96
S++A K+G V + ++V +
Sbjct: 16 SNYALY---WALKSGLRVRYLVSMVSE 39
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine
decarboxylase) EpiD {Staphylococcus epidermidis [TaxId:
1282]}
Length = 174
Score = 24.7 bits (53), Expect = 3.1
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 63 RVAVIGQSSFAA----EVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWRV 112
++ + +S LK++ V +F+ K V +++
Sbjct: 4 KLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLY 57
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 24.7 bits (53), Expect = 3.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 73 AAEVYKLLKKNGHSVVGVFTVVDKA 97
A +L++ + VV + +++
Sbjct: 154 ALSGLQLVEASDAVVVEMVSILSIP 178
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 24.7 bits (52), Expect = 3.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 63 RVAVIGQSSF--AAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWR 111
RV V G + + + V LL+ HSVV V ++V + D V+ ++ R
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR 54
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 24.0 bits (51), Expect = 5.4
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 62 LRVAVIGQSSFAAEVY-KLLKKNGHSVVGVFTVVDKANREDIVDEMY 107
L++A+IG A + Y +L + + + T + +
Sbjct: 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCT-RNPKVLGTLATRYR 47
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 24.4 bits (51), Expect = 5.5
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 21 SILTWSFNGNRSLTLVRTICH---PTGIVFRRSGSKSSQIHKCDLRVAVIGQSSFAAEVY 77
I W+ N +LTL + + +V + V + F Y
Sbjct: 15 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR----------YLYVGVRPEFRVLAY 64
Query: 78 KLLKKNGHSVVGVFTVVD 95
++ +G + +
Sbjct: 65 RIAPDDGALTFAAESALP 82
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 24.1 bits (51), Expect = 5.8
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDE 105
V V+G + + LK ++ +R ++
Sbjct: 8 FGVVVVGVGRAGSVRLRDLKDPRS--AAFLNLIGFVSRRELGSL 49
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 23.5 bits (50), Expect = 8.0
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHSVVGVFTVVDKANREDIVDEMYSLWRVALTATFTSG 121
+ V +IG + ++ +L + +DE V+ S
Sbjct: 3 MTVLIIGMGNIGKKLVELGNFEKIYA--YDRISKDIPGVVRLDEFQVPSDVSTVVECASP 60
Query: 122 P 122
Sbjct: 61 E 61
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 23.4 bits (50), Expect = 8.4
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 62 LRVAVIGQSSFAAEVYKLLKKNGHS----VVGVFTVVDKANREDIVD-EMYSLWRVALTA 116
+ VAVIG + L + +V + +D + S W+ AL A
Sbjct: 5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAA 64
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 23.7 bits (51), Expect = 8.5
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 12/46 (26%)
Query: 58 HKCDLRVAVIGQSSFAAEV------------YKLLKKNGHSVVGVF 91
+CD + IG+SS V L N V V
Sbjct: 131 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 23.6 bits (50), Expect = 9.1
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 66 VIGQSSFAAEVYKLLKKNGHSVVGVFTVVD 95
+I + + G V+GV +
Sbjct: 124 LISTGGSVLDAAAAASREGADVLGVVAIFT 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.133 0.389
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,660
Number of extensions: 17486
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 37
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)