BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16775
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
           Tomato Mosaic Virus
          Length = 446

 Score = 35.0 bits (79), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 149 KCQF-RFFTDQGLERHLLGSHGLVTSSMQEAANKGKDGGRCPVCGRVYQWKLLNHVARDH 207
           +CQF R F D+GL  H    + LV  S+ + A    D  + P   RV  +    H A+  
Sbjct: 232 RCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPAHFAKLE 291

Query: 208 NMSLKPAHLSYKCTVCTATFGMYRQFENHVYSAHSVAPRRPATDKKPQG-QSTDPMLKPL 266
              ++    + +C      F + +++E HV    S   ++  + +   G  S +P+ KPL
Sbjct: 292 VDEVETRRTTLRCPADVTHF-LNQRYEGHVMCTSS--EKKSVSQEMVSGAASINPVSKPL 348

Query: 267 K 267
           K
Sbjct: 349 K 349


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 31.2 bits (69), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 125 HMQWIHK--VKIHPKMIYNRPPLNCQKCQFRFFTDQGLERHLLGSHGLVTSSMQEAANKG 182
           H +++ K  +K+H +      P  C KC   +F  + L  H            +   N+ 
Sbjct: 14  HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH----------EARNCMNRS 63

Query: 183 KDGGRCPVCGRVYQWKLLNHVARDHNMSLKPAHLSYKCTVCTATFGMYRQFENHVYSAHS 242
           +    C VC   ++ ++     R H +S     + YKC+ C+  F   +  ++H+   HS
Sbjct: 64  EQVFTCSVCQETFRRRM---ELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119



 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 188 CPVCGRVYQWK--LLNHVARDHNMSLKPAHLSYKCTVCTATFGMYRQFENHVYSAHSVAP 245
           CP CG+ Y  K  LL H AR+    +  +   + C+VC  TF    +   H+ S     P
Sbjct: 38  CPKCGKCYFRKENLLEHEARN---CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94

Query: 246 RRPATDKKPQGQSTDPMLKPLKIND 270
            + ++  +   Q  D     +K++ 
Sbjct: 95  YKCSSCSQQFMQKKDLQSHMIKLHS 119


>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
           (Hsp70-1) Atpase Domain In Complex With Adp And
           Inorganic Phosphate
          Length = 409

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 165 LGSHGLVTSSMQEAANKGKDGGRCPVCGRVYQWKLLNHVARDHNMSLKPAHLSYKCT 221
           LG+  L   SM +AA  G D G    C  V+Q   +  +A D      P+++++  T
Sbjct: 13  LGTENLYFQSMAKAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT 69


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 27.7 bits (60), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 188 CPVCGRVYQWKLLNHVARDHNMSLKPAHLSYKCTVCTATFGMYRQFENHVYSAHSVAPR 246
           CPVCG  +  K     A++ ++ L  A   + C  C ATF        H+   H    R
Sbjct: 31  CPVCGESFASK----GAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,256,529
Number of Sequences: 62578
Number of extensions: 358925
Number of successful extensions: 576
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 19
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)