RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16775
         (306 letters)



>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 137

 Score = 27.2 bits (60), Expect = 1.6
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 169 GLVTSSMQEAANKGK-DGGRCPVCGRVY 195
           G           + K  G +C  CGR++
Sbjct: 22  GPAGEQFFNGLKQNKIIGSKCSKCGRIF 49


>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK,
           insert "zinc finger" domain {Escherichia coli [TaxId:
           562]}
          Length = 35

 Score = 24.3 bits (53), Expect = 2.5
 Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 14/40 (35%)

Query: 186 GR--CPVCGRVYQWKLLNHVARDHNMSLKPAHLSYKCTVC 223
           GR      GRVY            ++   P  +  K  V 
Sbjct: 1   GRRVHAPSGRVY------------HVKFNPPKVEGKDDVT 28


>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 295

 Score = 26.4 bits (57), Expect = 5.0
 Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 4/85 (4%)

Query: 117 PDLEQLRNHMQWIHKVKIHPKMIYNRPPLNCQKCQF----RFFTDQGLERHLLGSHGLVT 172
           P  E L  H ++I +      ++YN P             R   D      +  ++  + 
Sbjct: 110 PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDID 169

Query: 173 SSMQEAANKGKDGGRCPVCGRVYQW 197
              +  +   +      V       
Sbjct: 170 QIDRTVSLTKQARSDFMVWSGNDDR 194


>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 171

 Score = 25.3 bits (55), Expect = 6.8
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 67  DKKPQGQSTDPMLKPLKINDEITIIPQPPRPTASSSSSTSSSNNNKVKITPDLEQLRNHM 126
           + +       P++K  KI   +T+ P+       S    + S      I  DL+Q+++  
Sbjct: 54  NGEEDNSYYYPVIKDGKIVYTLTLSPKNKDDLNKSKEDMNYSVKISNFIAKDLDQIKDKN 113

Query: 127 QWI 129
             I
Sbjct: 114 SNI 116


>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
           insert "zinc finger" domain {Bacillus stearothermophilus
           [TaxId: 1422]}
          Length = 35

 Score = 23.0 bits (50), Expect = 7.5
 Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 14/40 (35%)

Query: 186 GR--CPVCGRVYQWKLLNHVARDHNMSLKPAHLSYKCTVC 223
           GR  C  CG  Y            ++   P      C  C
Sbjct: 1   GRRICRNCGATY------------HLIFHPPAKPGVCDKC 28


>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK,
           insert "zinc finger" domain {Bacillus globisporus
           [TaxId: 1459]}
          Length = 35

 Score = 22.6 bits (49), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)

Query: 186 GR--CPVCGRVY 195
           GR  C VCG  Y
Sbjct: 1   GRRICKVCGTSY 12


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,117,264
Number of extensions: 49750
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 14
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)