BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16776
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7T3C6|CPSF5_DANRE Cleavage and polyadenylation specificity factor subunit 5 OS=Danio
rerio GN=cpsf5 PE=2 SV=1
Length = 228
Score = 316 bits (809), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 149/201 (74%), Positives = 173/201 (86%), Gaps = 4/201 (1%)
Query: 18 NRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSV 77
N+ I +K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EFEKIGMRR+V
Sbjct: 22 NKYITQATKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTV 81
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
+GVL+VHEH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGVKQ+W+
Sbjct: 82 EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVKQDWV 141
Query: 138 VEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVE 193
++D IGNWWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL E
Sbjct: 142 IDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFE 201
Query: 194 LYDNSQGYGPIISSLPQALCR 214
LYDN+ GYGPIISSLPQ L R
Sbjct: 202 LYDNAPGYGPIISSLPQLLSR 222
>sp|Q6DJE4|CPSF5_XENLA Cleavage and polyadenylation specificity factor subunit 5
OS=Xenopus laevis GN=cpsf5 PE=2 SV=1
Length = 227
Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 170/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV+Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVQQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|Q5RAI8|CPSF5_PONAB Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo
abelii GN=NUDT21 PE=2 SV=1
Length = 227
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|O43809|CPSF5_HUMAN Cleavage and polyadenylation specificity factor subunit 5 OS=Homo
sapiens GN=NUDT21 PE=1 SV=1
Length = 227
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|Q3ZCA2|CPSF5_BOVIN Cleavage and polyadenylation specificity factor subunit 5 OS=Bos
taurus GN=NUDT21 PE=2 SV=1
Length = 227
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|Q4KM65|CPSF5_RAT Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus
norvegicus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|Q9CQF3|CPSF5_MOUSE Cleavage and polyadenylation specificity factor subunit 5 OS=Mus
musculus GN=Nudt21 PE=2 SV=1
Length = 227
Score = 308 bits (789), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>sp|Q55E68|CPSF5_DICDI Cleavage and polyadenylation specificity factor subunit 5
OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1
Length = 200
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 112/165 (67%), Gaps = 7/165 (4%)
Query: 56 SVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEI 115
S+ ++ R++D +EK G+R++V+G++++H+HG PH+L+LQ +FKLPGG+L GE+EI
Sbjct: 28 SLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQ-DNNYFKLPGGKLKPGENEI 86
Query: 116 EGLKRLLSDTLGRRDGVKQE--WIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFL 173
+GL R L+ L + W + D + WWRPNFEP +PY+P HIT PKE ++LF+
Sbjct: 87 DGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKKLFV 146
Query: 174 VQLPER----VPKNYKLVAAPLVELYDNSQGYGPIISSLPQALCR 214
V LPE+ V N L+A L E+Y+NSQ YG +ISS+P + R
Sbjct: 147 VTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISR 191
>sp|Q1IIT1|RIMP_KORVE Ribosome maturation factor RimP OS=Koribacter versatilis (strain
Ellin345) GN=rimP PE=3 SV=1
Length = 169
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 34 KNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDG 79
+++ P ++YT ++ P ++ S PA F+R K+ R +DG
Sbjct: 65 EDVVPGASYTLEVSSPGLDRKISKPADFERFTGSLVKVSTREPLDG 110
>sp|Q2SML5|RIMP_HAHCH Ribosome maturation factor RimP OS=Hahella chejuensis (strain KCTC
2396) GN=rimP PE=3 SV=2
Length = 150
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 113 DEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQY-----PYVPVHITSPKE 167
D+ E + R +S L D +K E+ +E + W RP F QY + V + +P
Sbjct: 49 DDCEKVSRQISAILDVEDPIKGEYTLEVSSPGWDRPLFNVEQYKAYIGSIIEVRLQAPFN 108
Query: 168 HRRLF 172
RR F
Sbjct: 109 GRRKF 113
>sp|A4FPP2|RPOC_SACEN DNA-directed RNA polymerase subunit beta' OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=rpoC PE=3 SV=1
Length = 1303
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 134 QEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPERVP 181
Q W+ E T+G W P YP+V + PK+ + + L ER P
Sbjct: 645 QPWLAETTLGRVWFNELLPEDYPFVNDLL--PKKRQAAIVNDLAERYP 690
>sp|A3CYX8|PLSB_SHEB5 Glycerol-3-phosphate acyltransferase OS=Shewanella baltica (strain
OS155 / ATCC BAA-1091) GN=plsB PE=3 SV=1
Length = 807
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 22 NLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVL 81
+ ++ N Q R++ + ++++ +K LF VPA ++ D F + G+ D +
Sbjct: 628 SCLTHNKQIPRQQVVSIVADFYPLLKAELFMGIKDVPAYVNQVLDFFIEQGLVVETDTLT 687
Query: 82 LVHEHGLPHVLM-------LQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGV 132
+V EH +L+ LQ F L E+E LL+ LG G+
Sbjct: 688 VVPEHTSQLLLLASSVSETLQRYAIIFNLLANRPKMERSELESESHLLAQRLGALHGI 745
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,057,117
Number of Sequences: 539616
Number of extensions: 3744520
Number of successful extensions: 8581
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8562
Number of HSP's gapped (non-prelim): 17
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)