Query psy16776
Match_columns 214
No_of_seqs 142 out of 184
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 21:44:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1689|consensus 100.0 1.2E-89 2.6E-94 576.7 12.3 199 16-214 11-213 (221)
2 PF13869 NUDIX_2: Nucleotide h 100.0 5.8E-89 1.3E-93 578.5 12.6 183 32-214 1-187 (188)
3 cd03673 Ap6A_hydrolase Diadeno 99.1 7.3E-10 1.6E-14 84.8 10.8 66 74-145 1-67 (131)
4 cd03428 Ap4A_hydrolase_human_l 99.1 1.8E-10 4E-15 88.8 7.1 57 73-129 1-57 (130)
5 cd04688 Nudix_Hydrolase_29 Mem 99.1 9.4E-10 2E-14 85.0 10.9 86 75-179 2-88 (126)
6 PLN02709 nudix hydrolase 99.1 6.5E-10 1.4E-14 97.4 10.0 116 71-195 29-178 (222)
7 cd04684 Nudix_Hydrolase_25 Con 99.1 1.1E-09 2.3E-14 83.6 9.7 103 76-195 2-115 (128)
8 PRK15434 GDP-mannose mannosyl 99.1 6.7E-10 1.5E-14 92.1 9.0 65 74-145 17-85 (159)
9 cd04679 Nudix_Hydrolase_20 Mem 99.0 7.1E-10 1.5E-14 85.5 7.8 63 74-145 2-68 (125)
10 PRK15472 nucleoside triphospha 99.0 9.3E-10 2E-14 87.0 8.0 51 75-128 4-60 (141)
11 cd04670 Nudix_Hydrolase_12 Mem 99.0 1.5E-09 3.2E-14 84.0 8.9 63 74-145 2-67 (127)
12 PRK09438 nudB dihydroneopterin 99.0 2.5E-09 5.5E-14 85.2 10.3 53 74-129 7-61 (148)
13 cd04669 Nudix_Hydrolase_11 Mem 99.0 1E-09 2.2E-14 85.2 7.2 49 90-144 13-64 (121)
14 PRK10546 pyrimidine (deoxy)nuc 99.0 1.3E-09 2.9E-14 84.7 7.7 51 75-128 4-59 (135)
15 cd03430 GDPMH GDP-mannose glyc 99.0 1.9E-09 4.1E-14 86.7 8.3 52 74-128 12-67 (144)
16 cd04689 Nudix_Hydrolase_30 Mem 99.0 6E-09 1.3E-13 80.3 10.7 85 75-178 2-87 (125)
17 PF00293 NUDIX: NUDIX domain; 99.0 3.5E-09 7.6E-14 80.5 8.9 52 75-128 2-59 (134)
18 cd04667 Nudix_Hydrolase_10 Mem 99.0 1.4E-09 3E-14 82.8 6.5 49 79-129 3-51 (112)
19 cd04511 Nudix_Hydrolase_4 Memb 99.0 2.6E-09 5.6E-14 83.6 7.9 59 78-145 16-78 (130)
20 PLN02325 nudix hydrolase 99.0 3.1E-09 6.6E-14 85.8 8.4 63 73-145 8-74 (144)
21 cd04686 Nudix_Hydrolase_27 Mem 99.0 2.8E-09 6E-14 83.9 7.9 49 76-128 2-51 (131)
22 cd04687 Nudix_Hydrolase_28 Mem 99.0 2.8E-09 6E-14 82.7 7.8 51 74-128 1-54 (128)
23 cd03426 CoAse Coenzyme A pyrop 98.9 3.2E-09 6.8E-14 86.4 8.3 56 74-129 1-63 (157)
24 cd04678 Nudix_Hydrolase_19 Mem 98.9 4.6E-09 9.9E-14 81.2 8.7 52 74-128 2-57 (129)
25 cd04682 Nudix_Hydrolase_23 Mem 98.9 6.4E-09 1.4E-13 80.2 9.3 50 76-128 2-58 (122)
26 cd04700 DR1025_like DR1025 fro 98.9 3.6E-09 7.8E-14 84.6 8.1 69 68-145 3-79 (142)
27 cd04676 Nudix_Hydrolase_17 Mem 98.9 5.2E-09 1.1E-13 79.3 8.2 53 73-128 1-54 (129)
28 cd04677 Nudix_Hydrolase_18 Mem 98.9 1.7E-08 3.6E-13 77.9 10.3 64 73-145 6-70 (132)
29 cd04695 Nudix_Hydrolase_36 Mem 98.9 4.2E-09 9.2E-14 82.5 6.8 54 76-129 1-57 (131)
30 cd04690 Nudix_Hydrolase_31 Mem 98.9 1E-08 2.2E-13 77.8 8.5 50 77-129 3-53 (118)
31 cd04680 Nudix_Hydrolase_21 Mem 98.9 8E-09 1.7E-13 78.2 7.9 62 77-147 3-66 (120)
32 cd04672 Nudix_Hydrolase_14 Mem 98.9 1.3E-08 2.8E-13 78.6 9.1 64 74-147 2-66 (123)
33 cd04696 Nudix_Hydrolase_37 Mem 98.9 6.2E-09 1.4E-13 80.4 7.3 50 76-128 4-55 (125)
34 COG1051 ADP-ribose pyrophospha 98.9 1.1E-08 2.3E-13 83.3 8.8 67 76-151 11-81 (145)
35 PRK10707 putative NUDIX hydrol 98.9 1E-08 2.2E-13 87.1 8.9 119 74-202 30-175 (190)
36 cd04691 Nudix_Hydrolase_32 Mem 98.9 1.2E-08 2.6E-13 78.7 8.6 50 76-129 2-57 (117)
37 cd03672 Dcp2p mRNA decapping e 98.9 6.5E-09 1.4E-13 84.2 7.1 51 77-128 3-54 (145)
38 cd04671 Nudix_Hydrolase_13 Mem 98.9 1.1E-08 2.3E-13 80.4 7.8 59 77-143 2-64 (123)
39 cd04673 Nudix_Hydrolase_15 Mem 98.8 1.6E-08 3.4E-13 76.7 8.3 60 76-145 2-65 (122)
40 cd03671 Ap4A_hydrolase_plant_l 98.8 1.2E-08 2.7E-13 81.6 7.6 52 74-128 3-56 (147)
41 cd04683 Nudix_Hydrolase_24 Mem 98.8 1.2E-08 2.5E-13 77.9 6.9 48 77-128 3-55 (120)
42 cd04664 Nudix_Hydrolase_7 Memb 98.8 1.8E-08 3.8E-13 78.1 7.6 51 78-128 4-57 (129)
43 cd03674 Nudix_Hydrolase_1 Memb 98.8 1.3E-08 2.9E-13 80.6 7.0 52 75-128 3-55 (138)
44 cd03427 MTH1 MutT homolog-1 (M 98.8 2.2E-08 4.7E-13 78.1 7.9 39 90-128 13-55 (137)
45 cd04666 Nudix_Hydrolase_9 Memb 98.8 3.4E-08 7.3E-13 77.6 8.5 63 77-145 2-67 (122)
46 cd04681 Nudix_Hydrolase_22 Mem 98.8 2.3E-08 4.9E-13 77.3 7.4 50 77-128 3-56 (130)
47 cd03675 Nudix_Hydrolase_2 Cont 98.8 2.8E-08 6E-13 77.3 8.0 39 90-128 12-53 (134)
48 TIGR00586 mutt mutator mutT pr 98.7 3.8E-08 8.2E-13 75.3 7.5 52 74-128 4-60 (128)
49 cd04685 Nudix_Hydrolase_26 Mem 98.7 1.5E-07 3.2E-12 75.2 11.2 51 75-128 1-57 (133)
50 PRK10776 nucleoside triphospha 98.7 7.2E-08 1.6E-12 73.4 8.8 52 75-128 4-60 (129)
51 TIGR02705 nudix_YtkD nucleosid 98.7 1.6E-07 3.5E-12 78.2 11.1 98 90-207 36-136 (156)
52 cd04665 Nudix_Hydrolase_8 Memb 98.7 7.9E-08 1.7E-12 76.0 8.7 53 90-148 12-64 (118)
53 cd03424 ADPRase_NUDT5 ADP-ribo 98.7 6.6E-08 1.4E-12 75.5 7.7 52 75-129 3-59 (137)
54 cd04699 Nudix_Hydrolase_39 Mem 98.7 3.5E-08 7.6E-13 75.3 6.0 48 79-128 5-58 (129)
55 PRK05379 bifunctional nicotina 98.7 6.1E-08 1.3E-12 88.8 8.5 51 74-128 203-257 (340)
56 cd04663 Nudix_Hydrolase_6 Memb 98.7 9.7E-08 2.1E-12 76.9 8.0 50 79-128 4-53 (126)
57 cd04694 Nudix_Hydrolase_35 Mem 98.6 1.3E-07 2.8E-12 76.8 8.2 51 77-129 3-59 (143)
58 PRK00714 RNA pyrophosphohydrol 98.6 1.2E-07 2.7E-12 77.3 8.0 54 72-128 6-61 (156)
59 cd04674 Nudix_Hydrolase_16 Mem 98.6 2.2E-07 4.8E-12 73.7 9.2 85 90-178 16-111 (118)
60 cd04693 Nudix_Hydrolase_34 Mem 98.6 7.8E-08 1.7E-12 74.5 6.3 50 76-129 2-58 (127)
61 cd04661 MRP_L46 Mitochondrial 98.6 8.5E-08 1.8E-12 75.8 6.5 41 88-128 12-55 (132)
62 PRK15393 NUDIX hydrolase YfcD; 98.6 2E-07 4.3E-12 78.0 9.0 58 70-129 32-96 (180)
63 cd03429 NADH_pyrophosphatase N 98.6 7.3E-08 1.6E-12 76.0 6.0 50 77-128 2-54 (131)
64 PRK03759 isopentenyl-diphospha 98.6 2.5E-07 5.3E-12 77.4 9.3 61 67-129 26-93 (184)
65 cd04692 Nudix_Hydrolase_33 Mem 98.6 2.1E-07 4.6E-12 74.1 7.2 55 75-129 3-64 (144)
66 cd03425 MutT_pyrophosphohydrol 98.5 4.6E-07 1E-11 67.7 8.3 50 77-128 3-57 (124)
67 cd02885 IPP_Isomerase Isopente 98.5 3.5E-07 7.5E-12 74.9 7.5 55 73-129 28-89 (165)
68 cd02883 Nudix_Hydrolase Nudix 98.5 1.4E-06 3E-11 64.1 10.0 51 76-129 2-55 (123)
69 PRK11762 nudE adenosine nucleo 98.4 7.3E-07 1.6E-11 74.6 8.0 42 88-129 58-104 (185)
70 cd04697 Nudix_Hydrolase_38 Mem 98.4 4.9E-07 1.1E-11 70.5 6.0 51 76-129 2-59 (126)
71 cd04662 Nudix_Hydrolase_5 Memb 98.4 1.2E-06 2.6E-11 70.8 7.5 50 79-128 4-62 (126)
72 COG0494 MutT NTP pyrophosphohy 98.3 1.4E-06 3E-11 64.7 6.6 51 77-128 13-66 (161)
73 PRK00241 nudC NADH pyrophospha 98.3 1.1E-06 2.3E-11 78.2 6.3 40 89-128 143-185 (256)
74 PRK08999 hypothetical protein; 98.3 1.9E-06 4.2E-11 76.7 7.7 40 90-129 18-62 (312)
75 KOG2839|consensus 98.3 2.5E-06 5.4E-11 70.6 7.6 89 67-169 2-92 (145)
76 TIGR02150 IPP_isom_1 isopenten 98.2 3.8E-06 8.3E-11 68.6 7.3 57 69-129 21-84 (158)
77 cd03670 ADPRase_NUDT9 ADP-ribo 98.1 4.6E-06 1E-10 71.3 5.6 43 86-128 46-89 (186)
78 TIGR00052 nudix-type nucleosid 98.1 1.4E-05 3.1E-10 67.5 7.5 98 78-195 47-163 (185)
79 cd03676 Nudix_hydrolase_3 Memb 98.0 2.5E-05 5.5E-10 64.6 7.7 61 69-129 26-95 (180)
80 PLN03143 nudix hydrolase; Prov 98.0 3.4E-05 7.4E-10 70.2 9.1 56 74-129 127-189 (291)
81 PRK10729 nudF ADP-ribose pyrop 97.8 0.00011 2.3E-09 63.2 8.4 53 76-129 50-112 (202)
82 cd03431 DNA_Glycosylase_C DNA 97.6 0.0003 6.5E-09 52.5 6.9 39 89-127 14-57 (118)
83 KOG3069|consensus 97.5 0.0003 6.5E-09 62.6 7.6 105 74-185 42-167 (246)
84 PLN02791 Nudix hydrolase homol 97.3 0.0016 3.4E-08 66.3 10.5 62 67-129 24-92 (770)
85 KOG3041|consensus 97.2 0.0034 7.3E-08 55.0 10.1 104 75-195 74-192 (225)
86 PRK15009 GDP-mannose pyrophosp 96.9 0.004 8.7E-08 53.1 8.0 51 77-129 47-108 (191)
87 KOG0648|consensus 96.5 0.0035 7.6E-08 57.4 4.8 52 74-128 115-172 (295)
88 KOG4195|consensus 96.4 0.0037 8E-08 55.7 4.0 38 89-126 139-177 (275)
89 KOG3084|consensus 96.4 0.0067 1.4E-07 56.3 5.7 50 79-128 190-242 (345)
90 COG2816 NPY1 NTP pyrophosphohy 96.3 0.0068 1.5E-07 55.2 5.5 53 74-128 142-197 (279)
91 PLN02552 isopentenyl-diphospha 96.3 0.014 3E-07 52.1 7.0 58 70-129 51-132 (247)
92 PLN02839 nudix hydrolase 94.1 0.32 7E-06 46.1 8.9 59 72-130 200-266 (372)
93 COG4119 Predicted NTP pyrophos 93.2 0.22 4.8E-06 41.3 5.5 31 98-128 35-65 (161)
94 PF14815 NUDIX_4: NUDIX domain 91.2 0.33 7.1E-06 36.9 4.1 38 90-128 10-52 (114)
95 TIGR00608 radc DNA repair prot 63.1 5.1 0.00011 35.1 2.0 50 72-140 155-206 (218)
96 PRK00024 hypothetical protein; 59.5 5.9 0.00013 34.7 1.8 49 72-139 161-211 (224)
97 cd08071 MPN_DUF2466 Mov34/MPN/ 58.6 7.3 0.00016 30.5 2.0 48 72-139 55-105 (113)
98 COG1443 Idi Isopentenyldiphosp 56.9 17 0.00037 31.5 4.1 54 75-130 33-93 (185)
99 PF06404 PSK: Phytosulfokine p 36.7 26 0.00057 26.4 1.9 18 107-124 51-68 (81)
100 KOG2937|consensus 35.6 7.1 0.00015 36.8 -1.6 56 72-128 79-135 (348)
101 KOG4548|consensus 34.6 78 0.0017 29.0 4.9 38 90-127 140-181 (263)
102 PF06453 LT-IIB: Type II heat- 30.9 2.1E+02 0.0046 23.1 6.3 49 62-111 27-80 (122)
103 PF04002 RadC: RadC-like JAB d 29.7 28 0.0006 27.5 1.1 39 73-128 61-101 (123)
104 TIGR01084 mutY A/G-specific ad 23.9 1.9E+02 0.0041 26.2 5.6 30 75-106 227-261 (275)
105 PF07026 DUF1317: Protein of u 20.9 79 0.0017 22.8 2.0 28 100-127 23-50 (60)
No 1
>KOG1689|consensus
Probab=100.00 E-value=1.2e-89 Score=576.68 Aligned_cols=199 Identities=63% Similarity=1.108 Sum_probs=192.1
Q ss_pred EeeeeeeeeccccccccceeEeecCceEeccCCCcccCCCChHHHHHHhHHHHhhcCceeEEEEEEEEecCCCCEEEEEE
Q psy16776 16 TVNRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQ 95 (214)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~iYpl~nY~F~~k~~~~ekd~sv~~Rl~rl~~~y~~~GmRrsV~aVilvh~~~~phVLLLQ 95 (214)
.++..++-..+...++++|++||||||+||+||++.|||+||++||+||+.+|++.||||||+||++||+|++|||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~vn~YPLsnYtFGtKe~~~eKD~svadrf~rmk~ey~k~gmRrsvegvlivheH~lPHvLLLQ 90 (221)
T KOG1689|consen 11 EEISDNTTRRNDVVHDRTVNLYPLSNYTFGTKEALREKDESVADRFARMKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQ 90 (221)
T ss_pred ccccccccccCCcchhheeeeeecccccccccchhhhccchHHHHHHHHHHHHHhhhhhheeeeeEEEeecCCCeEEEEe
Confidence 34444444567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCCCCCCCCCCCCCccceeEEEeee
Q psy16776 96 LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQ 175 (214)
Q Consensus 96 ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~~yPYlP~Hit~PKE~~klf~V~ 175 (214)
.+++||+||||+++|||+|++||+|.|+|.||..||...+|.||||||+|||||||+.||||+|||||+||||+|||+||
T Consensus 91 ig~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWRPNFe~~~YPyiP~hitkPKeh~kL~lV~ 170 (221)
T KOG1689|consen 91 IGNTFFKLPGGRLRPGEDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWRPNFETPMYPYIPPHITKPKEHTKLFLVQ 170 (221)
T ss_pred eCCEEEecCCCccCCCcchhHHHHHHHHHHhcccccccccccHhhhhhcccCCCCCCcccCCCCcccCCchhccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----CCCCceEEeecccccccCCCCccceeecccccccC
Q psy16776 176 LPER----VPKNYKLVAAPLVELYDNSQGYGPIISSLPQALCR 214 (214)
Q Consensus 176 Lpe~----vp~n~kL~AvPLfely~N~~~yG~~is~iP~llSr 214 (214)
||++ ||||+||+||||||||||++.||||||+||++|||
T Consensus 171 L~~k~~F~VPKN~KLlA~PLfeLydN~~~yGPiiSslp~~lsr 213 (221)
T KOG1689|consen 171 LPEKQQFAVPKNFKLLAVPLFELYDNAKTYGPIISSLPKLLSR 213 (221)
T ss_pred ccccceEeccCCceeeeeeHhhhhhccccccchhHHHHHHHhh
Confidence 9999 99999999999999999999999999999999997
No 2
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=100.00 E-value=5.8e-89 Score=578.47 Aligned_cols=183 Identities=66% Similarity=1.151 Sum_probs=157.7
Q ss_pred cceeEeecCceEeccCCCcccCCCChHHHHHHhHHHHhhcCceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCC
Q psy16776 32 RKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQG 111 (214)
Q Consensus 32 ~~~~iYpl~nY~F~~k~~~~ekd~sv~~Rl~rl~~~y~~~GmRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~G 111 (214)
++|+||||+||+||+||++.|||.|+++||+||+++|+++||||||+||||||+|+||||||||+++++|+||||+|++|
T Consensus 1 ~~~~iYPlsnY~Fg~ke~~~ekd~s~~~rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~~~~~fkLPGg~l~~g 80 (188)
T PF13869_consen 1 QTIRIYPLSNYTFGTKEAQPEKDPSVAARLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQIGNTFFKLPGGRLRPG 80 (188)
T ss_dssp -EEEE-BGGGEEEEEES----SSSSHHHHHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEETTTEEE-SEEE--TT
T ss_pred CeEEEecccceeeccCCcccccccCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEeccCccccCCccEeCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCCCCCCCCCCCCCccceeEEEeeeCCCC----CCCCceEE
Q psy16776 112 EDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLV 187 (214)
Q Consensus 112 E~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~~yPYlP~Hit~PKE~~klf~V~Lpe~----vp~n~kL~ 187 (214)
|+|+|||+|+|++.|+.+++...+|+||||||+|||||||+.||||+|||||+||||+|||+|+|||+ |||||||+
T Consensus 81 E~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~VPkn~kL~ 160 (188)
T PF13869_consen 81 EDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAVPKNMKLV 160 (188)
T ss_dssp --HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEEETTSEEE
T ss_pred CChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEecCCCCeEE
Confidence 99999999999999999888889999999999999999999999999999999999999999999999 99999999
Q ss_pred eecccccccCCCCccceeecccccccC
Q psy16776 188 AAPLVELYDNSQGYGPIISSLPQALCR 214 (214)
Q Consensus 188 AvPLfely~N~~~yG~~is~iP~llSr 214 (214)
||||||||||+++||++||||||+|||
T Consensus 161 AvPLFeLydN~~~YG~~issiP~lLSR 187 (188)
T PF13869_consen 161 AVPLFELYDNAQRYGPIISSIPQLLSR 187 (188)
T ss_dssp EEEHHHHTTTHHHHHHHHTTHHHHHTT
T ss_pred eecHhhhhcChhhcCchhhccchHhhc
Confidence 999999999999999999999999998
No 3
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.13 E-value=7.3e-10 Score=84.80 Aligned_cols=66 Identities=26% Similarity=0.338 Sum_probs=55.0
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccCc-eeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGTT-FFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~~-~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
|.+|.|||+..+.+..+|||+|+..+ .|.||||.+++||+..+++.||+.||+|. +..+...++..
T Consensus 1 ~~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl------~~~~~~~~~~~ 67 (131)
T cd03673 1 VLAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGI------RAEVGDPLGTI 67 (131)
T ss_pred CeeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCC------ceEecceEEEE
Confidence 46788888876666789999998765 99999999999999999999999999996 44555566654
No 4
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.11 E-value=1.8e-10 Score=88.81 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=53.2
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
|+++|-+|++..+.+...|||+|+..+.|.||||.+++||+..+++.||+.||+|..
T Consensus 1 ~~~~~g~vi~~~~~~~~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~ 57 (130)
T cd03428 1 EERSAGAIIYRRLNNEIEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGIT 57 (130)
T ss_pred CceEEEEEEEEecCCCceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCCC
Confidence 578999999998888889999999888999999999999999999999999999963
No 5
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.11 E-value=9.4e-10 Score=84.96 Aligned_cols=86 Identities=24% Similarity=0.387 Sum_probs=63.1
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPP 153 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~ 153 (214)
++|.|||+ ++ + +|||.|+.. +.|.||||.+++||+..+|+.||+.||+|. +..+...++.+....
T Consensus 2 ~~v~~vi~-~~-~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl------~~~~~~~~~~~~~~~---- 67 (126)
T cd04688 2 VRAAAIII-HN-G--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGL------KIEITRLLGVVENIF---- 67 (126)
T ss_pred eEEEEEEE-EC-C--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCC------ceecceeeEEEEEee----
Confidence 46778876 23 2 999999876 799999999999999999999999999996 556667777654211
Q ss_pred CCCCCCCCCCCccceeEEEeeeCCCC
Q psy16776 154 QYPYVPVHITSPKEHRRLFLVQLPER 179 (214)
Q Consensus 154 ~yPYlP~Hit~PKE~~klf~V~Lpe~ 179 (214)
++-.. .-.++..+|.+.++..
T Consensus 68 --~~~~~---~~~~~~~~f~~~~~~~ 88 (126)
T cd04688 68 --TYNGK---PGHEIEFYYLVTLLDE 88 (126)
T ss_pred --ccCCc---ccEEEEEEEEEEeCCC
Confidence 11111 1134567888888776
No 6
>PLN02709 nudix hydrolase
Probab=99.08 E-value=6.5e-10 Score=97.36 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=80.3
Q ss_pred cCceeEEEEEEEEec----CCCCEEEEEEccC------ceeeeCCccccCCC-CHHHHHHHHHHhhhCCCCC------C-
Q psy16776 71 IGMRRSVDGVLLVHE----HGLPHVLMLQLGT------TFFKLPGGELNQGE-DEIEGLKRLLSDTLGRRDG------V- 132 (214)
Q Consensus 71 ~GmRrsV~aVilvh~----~~~phVLLLQ~~~------~~f~LPGGrle~GE-~e~egLkReL~EeLg~~~~------~- 132 (214)
.++|.+++.|+|+.. .+.++|||.+|.. |+|.||||++++|| +.++++.||+.||+|.... .
T Consensus 29 ~~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L 108 (222)
T PLN02709 29 FPAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVL 108 (222)
T ss_pred CCCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeec
Confidence 356788888888754 3678999999974 89999999999986 5689999999999997421 0
Q ss_pred -----ccceEEeceEEEEec-CCCCCCCCCCCCCCCCCccceeEEEeeeCCCC-CCCCce---------EEeecccccc
Q psy16776 133 -----KQEWIVEDTIGNWWR-PNFEPPQYPYVPVHITSPKEHRRLFLVQLPER-VPKNYK---------LVAAPLVELY 195 (214)
Q Consensus 133 -----~~~~eVge~lg~wwR-p~Fe~~~yPYlP~Hit~PKE~~klf~V~Lpe~-vp~n~k---------L~AvPLfely 195 (214)
...+.|..+||.+-. +.|+ .+..|.|+..+|.|.|..- -|+|+. -..+|.|..+
T Consensus 109 ~~~~t~sg~~V~P~V~~~~~~~~~~---------~~~np~EV~~vf~vPL~~ll~~~~~~~~~~~~~g~~~~~~~f~~~ 178 (222)
T PLN02709 109 EPFVNKKGMSVAPVIGFLHDKKAFK---------PLPNPAEVEEIFDVPLEMFLKDKNKRAEEREHEGERYLLQYFDYY 178 (222)
T ss_pred CCeECCCCCEEEEEEEEecCCCCcc---------ccCChhhhheeEEecHHHHhCCcccceEEEEeCCceEEEEEEEEe
Confidence 122345555554421 1221 1347999999999998766 344432 2346777754
No 7
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.08 E-value=1.1e-09 Score=83.60 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=67.8
Q ss_pred EEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFE 151 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe 151 (214)
+|.|||+ ++ .+|||+|+.. +.|.||||++++||+..++++||+.||+|. +..+..+++.+......
T Consensus 2 ~~~~ii~-~~---~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl------~~~~~~~~~~~~~~~~~ 71 (128)
T cd04684 2 GAYAVIP-RD---GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGL------TVEIGRRLGSASRYFYS 71 (128)
T ss_pred eeEEEEE-eC---CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCc------EeecceeeeEEEEEEEC
Confidence 5667664 33 5999999986 799999999999999999999999999996 44555666664211111
Q ss_pred CCCCCCCCCCCCCccceeEEEeeeCCCCCC-------CCceEEeecccccc
Q psy16776 152 PPQYPYVPVHITSPKEHRRLFLVQLPERVP-------KNYKLVAAPLVELY 195 (214)
Q Consensus 152 ~~~yPYlP~Hit~PKE~~klf~V~Lpe~vp-------~n~kL~AvPLfely 195 (214)
|...+.-..+.-+|.+......+ ......-+|+=||-
T Consensus 72 -------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 115 (128)
T cd04684 72 -------PDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAI 115 (128)
T ss_pred -------CCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhh
Confidence 11011123455677777765421 12455666666665
No 8
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.07 E-value=6.7e-10 Score=92.06 Aligned_cols=65 Identities=22% Similarity=0.311 Sum_probs=50.7
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
..+|.+||.. +.-+|||+|+.+ ++|.||||++++||+..+|++||+.||+|.. .+..++.+++.|
T Consensus 17 ~~~v~~vI~~---~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~----v~~~~~~~~~~~ 85 (159)
T PRK15434 17 LISLDFIVEN---SRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLR----LPITAGQFYGVW 85 (159)
T ss_pred eEEEEEEEEC---CCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCc----cccccceEEEEE
Confidence 5677777653 234999999974 6999999999999999999999999999962 123455666654
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.05 E-value=7.1e-10 Score=85.53 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=50.0
Q ss_pred eeEEEEEEEEecCCCCEEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
|.+|.+||+-.+ -.|||+++. .+.|.||||++++||+..+|++||+.||+|. +..+.++++..
T Consensus 2 ~~~~~~~i~~~~---~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl------~~~~~~~~~~~ 68 (125)
T cd04679 2 RVGCGAAILRDD---GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGL------SIHSTRLLCVV 68 (125)
T ss_pred ceEEEEEEECCC---CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCC------CcccceEEEEE
Confidence 677888886322 389999975 3799999999999999999999999999996 34444556553
No 10
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.03 E-value=9.3e-10 Score=87.04 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=42.5
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
++|.+.++.+++ +|||+|+.. |.|.||||++++||+..+|+.||+.||+|.
T Consensus 4 r~~~~~ii~~~~---~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl 60 (141)
T PRK15472 4 RTIVCPLIQNDG---AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 60 (141)
T ss_pred eeEEEEEEecCC---EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 455555554443 899999854 789999999999999999999999999996
No 11
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.03 E-value=1.5e-09 Score=83.95 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=49.7
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
+-+|.|+|+.++ .+|||+|+.. +.|.||||++++||+..+++.||+.||+|. +.++...++..
T Consensus 2 ~~~~~~~v~~~~---~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl------~~~~~~~~~~~ 67 (127)
T cd04670 2 TVGVGGLVLNEK---NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI------DTEFVSVVGFR 67 (127)
T ss_pred eeEEEEEEEcCC---CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC------CcceeEEEEEE
Confidence 346677776433 4899999875 799999999999999999999999999996 34555566543
No 12
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.02 E-value=2.5e-09 Score=85.17 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=43.6
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC--ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT--TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~--~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
|-+|.+|++-+++ +|||+|+.. +.|.||||.+++||+..+|++|||.||+|..
T Consensus 7 ~~~v~~vi~~~~~---~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~ 61 (148)
T PRK09438 7 PVSVLVVIYTPDL---GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGID 61 (148)
T ss_pred ceEEEEEEEeCCC---eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcC
Confidence 5566666653333 699998753 6899999999999999999999999999973
No 13
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.01 E-value=1e-09 Score=85.16 Aligned_cols=49 Identities=29% Similarity=0.475 Sum_probs=41.8
Q ss_pred EEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEE
Q psy16776 90 HVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144 (214)
Q Consensus 90 hVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~ 144 (214)
+|||+|+.. +.|.||||++++||+..+|++||+.||+|. +.++++.++.
T Consensus 13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl------~~~~~~~~~~ 64 (121)
T cd04669 13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGL------DVRVEEIFLI 64 (121)
T ss_pred EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCe------eEeeeeEEEE
Confidence 899999853 589999999999999999999999999996 4455555554
No 14
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.00 E-value=1.3e-09 Score=84.69 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=42.3
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
..+.++|+.++. +|||.|+.. |.|.||||++++||+..+|++||+.||+|.
T Consensus 4 ~~~~~~ii~~~~---~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl 59 (135)
T PRK10546 4 IDVVAAIIERDG---KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGI 59 (135)
T ss_pred EEEEEEEEecCC---EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 445555554433 899999853 689999999999999999999999999996
No 15
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=98.99 E-value=1.9e-09 Score=86.74 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=44.1
Q ss_pred eeEEEEEEEEecCCCCEEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+.+|.+||+-. .-+|||.|+. .+.|.||||++++||+..+|+.||+.||+|.
T Consensus 12 ~v~v~~vI~~~---~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl 67 (144)
T cd03430 12 LVSIDLIVENE---DGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGL 67 (144)
T ss_pred eEEEEEEEEeC---CCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCC
Confidence 56777777522 2399999985 4789999999999999999999999999996
No 16
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=98.98 E-value=6e-09 Score=80.33 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=58.2
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPP 153 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~ 153 (214)
.+|.|||+ ++. +|||+++.. +.|.||||.+++||+..+|++||+.||+|. +..+...++..-.
T Consensus 2 ~~~~~vi~-~~~---~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl------~~~~~~~l~~~~~------ 65 (125)
T cd04689 2 LRARAIVR-AGN---KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGV------AVSDGRFLGAIEN------ 65 (125)
T ss_pred eEEEEEEE-eCC---EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCc------eeeccEEEEEEee------
Confidence 46777776 333 899998865 699999999999999999999999999996 3334444443210
Q ss_pred CCCCCCCCCCCccceeEEEeeeCCC
Q psy16776 154 QYPYVPVHITSPKEHRRLFLVQLPE 178 (214)
Q Consensus 154 ~yPYlP~Hit~PKE~~klf~V~Lpe 178 (214)
.| +.+-....++..+|.+.++.
T Consensus 66 --~~-~~~~~~~~~~~~~f~~~~~~ 87 (125)
T cd04689 66 --QW-HEKGVRTHEINHIFAVESSW 87 (125)
T ss_pred --ee-ccCCceEEEEEEEEEEEccc
Confidence 01 11222334556678877753
No 17
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=98.97 E-value=3.5e-09 Score=80.53 Aligned_cols=52 Identities=33% Similarity=0.663 Sum_probs=43.3
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+.++++.+..+ +|||+|+.+ +.|.+|||++++||+..+|++||+.||+|.
T Consensus 2 ~~~v~~ii~~~~~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~ 59 (134)
T PF00293_consen 2 RRAVGVIIFNEDG--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGL 59 (134)
T ss_dssp EEEEEEEEEETTT--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSE
T ss_pred CCEEEEEEEeCCc--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccc
Confidence 3444455555555 999999975 479999999999999999999999999995
No 18
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.97 E-value=1.4e-09 Score=82.78 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=41.8
Q ss_pred EEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 79 GVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 79 aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
|.+|+..+ -+|||+|+..+.|.||||.+++||+..+|+.||+.||+|..
T Consensus 3 a~~i~~~~--~~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~ 51 (112)
T cd04667 3 ATVICRRG--GRVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGLQ 51 (112)
T ss_pred eEEEEecC--CEEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCc
Confidence 33444343 38999999889999999999999999999999999999963
No 19
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.96 E-value=2.6e-09 Score=83.55 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=45.9
Q ss_pred EEEEEEecCCCCEEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 78 DGVLLVHEHGLPHVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 78 ~aVilvh~~~~phVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
.++|+.++ -+|||+|+. .+.|.||||.+++||+.+++++||+.||+|. +..+...++..
T Consensus 16 v~~ii~~~---~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl------~~~~~~~~~~~ 78 (130)
T cd04511 16 VGCVPEWE---GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGA------RVEIDGLYAVY 78 (130)
T ss_pred EEEEEecC---CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC------EEEeeeEEEEE
Confidence 34444444 389999973 4799999999999999999999999999996 45555555543
No 20
>PLN02325 nudix hydrolase
Probab=98.96 E-value=3.1e-09 Score=85.78 Aligned_cols=63 Identities=29% Similarity=0.267 Sum_probs=50.3
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
.|.+|.+||+ ++ -+|||.|+.+ +.|.||||.+++||+..++++||+.||+|. +..+.+.++..
T Consensus 8 p~~~v~~vi~-~~---~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl------~v~~~~~l~~~ 74 (144)
T PLN02325 8 PRVAVVVFLL-KG---NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL------EIEKIELLTVT 74 (144)
T ss_pred CeEEEEEEEE-cC---CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCC------CCcceEEEEEe
Confidence 4666666664 33 2899999874 799999999999999999999999999996 45556666653
No 21
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=2.8e-09 Score=83.94 Aligned_cols=49 Identities=35% Similarity=0.661 Sum_probs=42.8
Q ss_pred EEEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+|.||| +++. +|||+|+.+ +.|.||||++++||+..++++||+.||+|.
T Consensus 2 ~~~~ii-~~~~---~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl 51 (131)
T cd04686 2 AVRAII-LQGD---KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGA 51 (131)
T ss_pred cEEEEE-EECC---EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCC
Confidence 466666 4543 899999876 799999999999999999999999999996
No 22
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=2.8e-09 Score=82.70 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=43.7
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+|.|||+ +++ +|||+|+.. +.|.||||++++||+..+|++||+.||+|.
T Consensus 1 r~~a~~iv~-~~~---~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl 54 (128)
T cd04687 1 RNSAKAVII-KND---KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGI 54 (128)
T ss_pred CcEEEEEEE-ECC---EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 567777776 333 999999842 579999999999999999999999999996
No 23
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=98.95 E-value=3.2e-09 Score=86.44 Aligned_cols=56 Identities=30% Similarity=0.467 Sum_probs=49.2
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCC-CCHHHHHHHHHHhhhCCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQG-EDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~G-E~e~egLkReL~EeLg~~ 129 (214)
|+++..|++....+..+|||.||.. |.|.||||++++| |+..+|++||+.||+|..
T Consensus 1 ~~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~ 63 (157)
T cd03426 1 RRAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLP 63 (157)
T ss_pred CceEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCC
Confidence 5677788887777778999999864 6899999999999 999999999999999963
No 24
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.95 E-value=4.6e-09 Score=81.24 Aligned_cols=52 Identities=29% Similarity=0.341 Sum_probs=44.1
Q ss_pred eeEEEEEEEEecCCCCEEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+|.++|+ +.+ -+|||.|+. .+.|.+|||++++||+..+|++||+.||+|.
T Consensus 2 ~~~v~~ii~-~~~--~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl 57 (129)
T cd04678 2 RVGVGVFVL-NPK--GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57 (129)
T ss_pred ceEEEEEEE-CCC--CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCC
Confidence 566766665 332 389999986 5799999999999999999999999999996
No 25
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.94 E-value=6.4e-09 Score=80.21 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=43.3
Q ss_pred EEEEEEEEecCCCCEEEEEEccC-------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT-------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~-------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.|.++++.++ .+|||+|+.. |.|.||||++++||+..+|+.||+.||+|.
T Consensus 2 ~v~~~~~~~~---g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl 58 (122)
T cd04682 2 GVALALLIGD---GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGL 58 (122)
T ss_pred ceEEEEEEcC---CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCC
Confidence 4666776554 4999999963 589999999999999999999999999996
No 26
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=98.94 E-value=3.6e-09 Score=84.64 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=51.7
Q ss_pred HhhcCc----eeEEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEe
Q psy16776 68 FEKIGM----RRSVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVE 139 (214)
Q Consensus 68 y~~~Gm----RrsV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVg 139 (214)
|+..|+ ..+|.+|++ +.. ..|||+|+.. +.|.||||.+++||+.++|++||+.||.|. +.++.
T Consensus 3 ~~~~~~~~~~~~av~~vv~-~~~--~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl------~~~~~ 73 (142)
T cd04700 3 YDERHHVEVEARAAGAVIL-NER--NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGL------RVRPV 73 (142)
T ss_pred cccccCcceeeeeEEEEEE-eCC--CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCc------eeecc
Confidence 455554 456666665 322 2699988753 689999999999999999999999999996 44555
Q ss_pred ceEEEE
Q psy16776 140 DTIGNW 145 (214)
Q Consensus 140 e~lg~w 145 (214)
.+++.+
T Consensus 74 ~~~~~~ 79 (142)
T cd04700 74 KFLGTY 79 (142)
T ss_pred EEEEEE
Confidence 666665
No 27
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.93 E-value=5.2e-09 Score=79.28 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=44.8
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+|.+|.+|++ ++.-+|||.|+.+ +.|.||||++++||+..+|++||+.||+|.
T Consensus 1 ~~~~v~~ii~---~~~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl 54 (129)
T cd04676 1 ILPGVTAVVR---DDEGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGL 54 (129)
T ss_pred CcceEEEEEE---CCCCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCc
Confidence 3667777775 2224899999864 789999999999999999999999999996
No 28
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.90 E-value=1.7e-08 Score=77.87 Aligned_cols=64 Identities=27% Similarity=0.370 Sum_probs=48.3
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
++.+|.++++ ..+ -+|||.++.. +.|.||||.+++||+..+|+.||+.||+|. +......++.+
T Consensus 6 ~~~~~~~~v~-~~~--~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi------~~~~~~~~~~~ 70 (132)
T cd04677 6 ILVGAGVILL-NEQ--GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGL------EVEELELLGVY 70 (132)
T ss_pred cccceEEEEE-eCC--CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCC------eeeeeEEEEEe
Confidence 3455555554 322 2899988875 489999999999999999999999999996 44555566554
No 29
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.89 E-value=4.2e-09 Score=82.45 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=47.8
Q ss_pred EEEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+|-||++....+..+|||+|+.. +.|.+|||++++||+..+|+.||+.||+|..
T Consensus 1 ~~~~v~~~~~~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 57 (131)
T cd04695 1 AVSGVLLRSLDKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGIS 57 (131)
T ss_pred CceEEEEEEcCCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCC
Confidence 46788887777778999999874 7899999999999999999999999999963
No 30
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=1e-08 Score=77.79 Aligned_cols=50 Identities=34% Similarity=0.627 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
|.++++.++. +|||+|+.+ +.|.||||++++||+..+|+.||+.||+|..
T Consensus 3 ~~~~v~~~~~---~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~ 53 (118)
T cd04690 3 AAALILVRDG---RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD 53 (118)
T ss_pred EEEEEEecCC---eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCc
Confidence 4455554433 899988764 7899999999999999999999999999963
No 31
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=8e-09 Score=78.25 Aligned_cols=62 Identities=27% Similarity=0.457 Sum_probs=47.5
Q ss_pred EEEEEEEecCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceE-EeceEEEEec
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI-VEDTIGNWWR 147 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~e-Vge~lg~wwR 147 (214)
|.++++ ..+ -.|||+|+.. +.|.||||.+++||+..+|++||+.||+|. +.. +..+++.+..
T Consensus 3 ~~~~i~-~~~--~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~------~~~~~~~~~~~~~~ 66 (120)
T cd04680 3 ARAVVT-DAD--GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGI------RLAVVAELLGVYYH 66 (120)
T ss_pred eEEEEE-CCC--CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCC------ccccccceEEEEec
Confidence 444444 332 3899999875 489999999999999999999999999996 333 4566666653
No 32
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=1.3e-08 Score=78.60 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=52.0
Q ss_pred eeEEEEEEEEecCCCCEEEEEEcc-CceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEec
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLG-TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWR 147 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~-~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwR 147 (214)
+.+|.|+|+ ++ ..|||+|+. .+.|.||||++++||+..+|++||+.||+|. +..+..+++...+
T Consensus 2 ~~~v~~~i~-~~---~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~------~~~~~~~~~~~~~ 66 (123)
T cd04672 2 KVDVRAAIF-KD---GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGL------DVKVRKLAAVDDR 66 (123)
T ss_pred cceEEEEEE-EC---CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCC------eeeEeEEEEEecc
Confidence 456777776 33 389999887 5799999999999999999999999999996 4466777766544
No 33
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.88 E-value=6.2e-09 Score=80.41 Aligned_cols=50 Identities=24% Similarity=0.477 Sum_probs=41.4
Q ss_pred EEEEEEEEecCCCCEEEEEEcc--CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLG--TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~--~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+|.|+|+ +.. -+|||+|+. .+.|.||||++++||+..+|+.||+.||+|.
T Consensus 4 ~v~~~i~-~~~--~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl 55 (125)
T cd04696 4 TVGALIY-APD--GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGL 55 (125)
T ss_pred EEEEEEE-CCC--CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCC
Confidence 4555554 323 389999975 4799999999999999999999999999996
No 34
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=98.87 E-value=1.1e-08 Score=83.34 Aligned_cols=67 Identities=24% Similarity=0.403 Sum_probs=54.4
Q ss_pred EEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFE 151 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe 151 (214)
.+.+++++.+. +|||+|+.+ |.|.||||.++.||+-.+++.||+.||.|. +..+.+.++..-.++.+
T Consensus 11 ~~v~~~i~~~~---~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL------~~~~~~~~~v~~~~~rd 81 (145)
T COG1051 11 VAVGALIVRNG---RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL------RVRVLELLAVFDDPGRD 81 (145)
T ss_pred eeeeEEEEeCC---EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCC------cccceeEEEEecCCCCC
Confidence 34444545454 999999986 689999999999999999999999999996 46667778777666665
No 35
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.87 E-value=1e-08 Score=87.13 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=72.8
Q ss_pred eeEEEEEEEEecCCCCEEEEEEcc------CceeeeCCccccCC-CCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEe
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLG------TTFFKLPGGELNQG-EDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWW 146 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~------~~~f~LPGGrle~G-E~e~egLkReL~EeLg~~~~~~~~~eVge~lg~ww 146 (214)
|.+|..|.++ +.+.++||+.||. .|.|.||||++++| |+..++.+||+.||.|... .+|+ ++|+.+
T Consensus 30 ~~aavvl~l~-~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~---~~~~---~lg~l~ 102 (190)
T PRK10707 30 RQAAVLIPIV-RRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPP---SAVE---VIGVLP 102 (190)
T ss_pred CCeEEEEEEE-ECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc---cceE---EEEEee
Confidence 4444444444 4456799999965 26899999999986 5689999999999999742 2333 344332
Q ss_pred ----cCCCCCCCCCC---CC---CCCCCccceeEEEeeeCCCC----------CCCCceEEeecccccccCCCCcc
Q psy16776 147 ----RPNFEPPQYPY---VP---VHITSPKEHRRLFLVQLPER----------VPKNYKLVAAPLVELYDNSQGYG 202 (214)
Q Consensus 147 ----Rp~Fe~~~yPY---lP---~Hit~PKE~~klf~V~Lpe~----------vp~n~kL~AvPLfely~N~~~yG 202 (214)
.++|. ..|| +. +....+.|...++.|.|-+- +.++..-..+|+|. |++..-+|
T Consensus 103 ~~~~~~~~~--~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iWG 175 (190)
T PRK10707 103 PVDSSTGYQ--VTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGRYHPLDIYRRGQSHRVWLSW-YEQYFVWG 175 (190)
T ss_pred eeeccCCcE--EEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCcccceeEEEeeCCcEEEEEEEE-eCCcEEEh
Confidence 11221 2222 11 12236789999999887664 22222334677775 55433344
No 36
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.87 E-value=1.2e-08 Score=78.69 Aligned_cols=50 Identities=32% Similarity=0.553 Sum_probs=41.7
Q ss_pred EEEEEEEEecCCCCEEEEEEcc------CceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLG------TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~------~~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.|.|||+ ++ .+|||.|+. .+.|.||||++++||+..+++.||+.||+|..
T Consensus 2 ~v~~vi~-~~---~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~ 57 (117)
T cd04691 2 GVVGVLF-SD---DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVD 57 (117)
T ss_pred eEEEEEE-EC---CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCC
Confidence 3555554 33 489999985 26899999999999999999999999999963
No 37
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=98.86 E-value=6.5e-09 Score=84.19 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=42.8
Q ss_pred EEEEEEEecCCCCEEEEEEcc-CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLG-TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~-~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.|++++++++ -+|||+|+. .+.|.||||++++||+..+|++|||.||+|.
T Consensus 3 ~~gaii~~~~~-~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl 54 (145)
T cd03672 3 VYGAIILNEDL-DKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGF 54 (145)
T ss_pred eeEEEEEeCCC-CEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCc
Confidence 56666665432 389999974 3599999999999999999999999999996
No 38
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.85 E-value=1.1e-08 Score=80.35 Aligned_cols=59 Identities=20% Similarity=0.366 Sum_probs=46.3
Q ss_pred EEEEEEEecCCCCEEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEE
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIG 143 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg 143 (214)
|.++++++.+ -+|||+|+. .+.|.||||++++||+..+|++||+.||+|. +..+.++++
T Consensus 2 ~~~~vv~~~~--~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~------~~~~~~~~~ 64 (123)
T cd04671 2 IVAAVILNNQ--GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGL------DCEPTTLLS 64 (123)
T ss_pred EEEEEEEcCC--CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCC------eeecceEEE
Confidence 4555655432 389999975 3689999999999999999999999999996 445555554
No 39
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.85 E-value=1.6e-08 Score=76.69 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=46.3
Q ss_pred EEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEE
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNW 145 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~w 145 (214)
+|.++|+ ++ ..|||+|+.. +.|.||||.+++||+..+|++||+.||+|. +....++++..
T Consensus 2 ~v~~ii~-~~---~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl------~~~~~~~~~~~ 65 (122)
T cd04673 2 AVGAVVF-RG---GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGL------EAEVGRLLTVV 65 (122)
T ss_pred cEEEEEE-EC---CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCc------EeeeceeEEEE
Confidence 3445544 33 3899999863 689999999999999999999999999996 34445555553
No 40
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=98.83 E-value=1.2e-08 Score=81.56 Aligned_cols=52 Identities=27% Similarity=0.393 Sum_probs=43.2
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC--ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT--TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~--~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+|.+||+ ..+ .+|||+|+.. +.|.||||.+++||+..+++.||+.||.|.
T Consensus 3 ~~~v~~ii~-~~~--~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl 56 (147)
T cd03671 3 RPNVGVVLF-NED--GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGL 56 (147)
T ss_pred CceEEEEEE-eCC--CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCC
Confidence 445555555 322 5999999875 599999999999999999999999999996
No 41
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.82 E-value=1.2e-08 Score=77.87 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=40.5
Q ss_pred EEEEEEEecCCCCEEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+|| ++++ +|||.|+.. +.|.||||++++||+..+|++||+.||+|.
T Consensus 3 v~~vi-~~~~---~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (120)
T cd04683 3 VYVLL-RRDD---EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGV 55 (120)
T ss_pred EEEEE-EECC---EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCC
Confidence 44554 4443 899999863 689999999999999999999999999996
No 42
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.80 E-value=1.8e-08 Score=78.13 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 78 DGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 78 ~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.+|++.|..+..+|||+|+.. +.|.+|||++++||+..+|+.||+.||+|.
T Consensus 4 ~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl 57 (129)
T cd04664 4 VLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGL 57 (129)
T ss_pred EEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCC
Confidence 455666664567999999974 799999999999999999999999999997
No 43
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=98.80 E-value=1.3e-08 Score=80.60 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=42.5
Q ss_pred eEEEEEEEEecCCCCEEEEEEcc-CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLG-TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~-~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.+|.++++ .++ ..+|||+|+. .+.|.||||.+++||+..+|+.||+.||.|.
T Consensus 3 ~~~~~~v~-~~~-~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl 55 (138)
T cd03674 3 FTASAFVV-NPD-RGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGI 55 (138)
T ss_pred EEEEEEEE-eCC-CCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 34555554 332 2599999976 4799999999999999999999999999996
No 44
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=98.80 E-value=2.2e-08 Score=78.05 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=36.8
Q ss_pred EEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 90 HVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 90 hVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+|||+|+.. +.|.||||.+++||+..+|++||+.||+|.
T Consensus 13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl 55 (137)
T cd03427 13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGL 55 (137)
T ss_pred EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCe
Confidence 899999874 689999999999999999999999999996
No 45
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.78 E-value=3.4e-08 Score=77.65 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=48.9
Q ss_pred EEEEEEEe-cCCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEe-ceEEEE
Q psy16776 77 VDGVLLVH-EHGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVE-DTIGNW 145 (214)
Q Consensus 77 V~aVilvh-~~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVg-e~lg~w 145 (214)
|.|+|+.. +.+..+|||+++.. +.|.||||.+++||+..+|++||+.||.|. +..+. +++|.+
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~------~~~~~~~~l~~~ 67 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGV------RGKIGKRPLGRF 67 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCC------cccccceEEEEE
Confidence 34444443 44467999999764 789999999999999999999999999996 33444 677765
No 46
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.78 E-value=2.3e-08 Score=77.28 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=41.3
Q ss_pred EEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+++|+++..++ +|||+|+.. +.|.||||++++||+..+++.||+.||+|.
T Consensus 3 av~~~i~~~~~--~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl 56 (130)
T cd04681 3 AVGVLILNEDG--ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGL 56 (130)
T ss_pred eEEEEEEcCCC--cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCC
Confidence 44555544433 899999853 699999999999999999999999999996
No 47
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=98.78 E-value=2.8e-08 Score=77.33 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=36.2
Q ss_pred EEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 90 HVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 90 hVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+|||+|+.. +.|.||||.+++||+..+|++||+.||+|.
T Consensus 12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl 53 (134)
T cd03675 12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGW 53 (134)
T ss_pred EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCc
Confidence 899999763 589999999999999999999999999996
No 48
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=3.8e-08 Score=75.34 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=41.5
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
++.+.+|| +++++ .||+.||.. |.|.||||++++||+..+++.||+.||+|.
T Consensus 4 ~~~~~~ii-~~~~~--~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~ 60 (128)
T TIGR00586 4 QQIAVGII-RNENG--EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGI 60 (128)
T ss_pred EEEEEEEE-ECCCC--EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCC
Confidence 44455554 33322 799988853 699999999999999999999999999996
No 49
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.74 E-value=1.5e-07 Score=75.22 Aligned_cols=51 Identities=29% Similarity=0.474 Sum_probs=44.1
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|++.++++.++. +||+.++.. +.|.+|||.+++||+..+|++|++.||+|.
T Consensus 1 ~~~~~~i~~~~g---~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~ 57 (133)
T cd04685 1 RAARVVLLDPDD---RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGI 57 (133)
T ss_pred CeEEEEEEcCCC---eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCC
Confidence 577788876655 899988742 589999999999999999999999999996
No 50
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=98.73 E-value=7.2e-08 Score=73.36 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=41.8
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
+.+.++++.++ ..+|||.||+. |.|.||||.+++||+..+++.|++.||+|.
T Consensus 4 ~~~~~~ii~~~--~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl 60 (129)
T PRK10776 4 LQIAVGIIRNP--NNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGI 60 (129)
T ss_pred eEEEEEEEECC--CCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCC
Confidence 34444444433 34899999864 699999999999999999999999999996
No 51
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.72 E-value=1.6e-07 Score=78.19 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=71.1
Q ss_pred EEEEEEccCceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCCCCCCCCCCCCCcccee
Q psy16776 90 HVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHR 169 (214)
Q Consensus 90 hVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~~yPYlP~Hit~PKE~~ 169 (214)
++||++.....|.||||++++||+..+|++|||.||.|. ....-.++|+++-.. . ...+++
T Consensus 36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~------~~~~~~~lg~~~~~~----------~---~~~~~~ 96 (156)
T TIGR02705 36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGA------IVKELHYIGQYEVEG----------E---STDFVK 96 (156)
T ss_pred EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCc------EeeeeEEEEEEEecC----------C---CcEEEE
Confidence 799998877789999999999999999999999999996 333445777654211 1 146778
Q ss_pred EEEeeeCCCC--CCCCceEE-eecccccccCCCCccceeec
Q psy16776 170 RLFLVQLPER--VPKNYKLV-AAPLVELYDNSQGYGPIISS 207 (214)
Q Consensus 170 klf~V~Lpe~--vp~n~kL~-AvPLfely~N~~~yG~~is~ 207 (214)
.+|+....+. .+..+... .+++=++-+.. .-|+..|.
T Consensus 97 ~vf~A~~~~~~~~~e~~E~~~~~~~~~~~~~~-~~g~~~s~ 136 (156)
T TIGR02705 97 DVYFAEVSALESKDDYLETKGPVLLQEIPDII-KADPRFSF 136 (156)
T ss_pred EEEEEEEeccccCCCceeeEeEEEHHHHHHHH-hcCCcccE
Confidence 8888877633 56667777 57777775544 34654443
No 52
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.71 E-value=7.9e-08 Score=75.97 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=44.5
Q ss_pred EEEEEEccCceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecC
Q psy16776 90 HVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRP 148 (214)
Q Consensus 90 hVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp 148 (214)
+|||+++..+.|.||||++++||+..++++||+.||.|.. ....+.+|.++.+
T Consensus 12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~------~~~~~~l~~~~~~ 64 (118)
T cd04665 12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAE------LGSLTLVGYYQVD 64 (118)
T ss_pred EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCCc------cCceEEEEEEEec
Confidence 8999999888999999999999999999999999999963 2344566665543
No 53
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=98.69 E-value=6.6e-08 Score=75.46 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=41.4
Q ss_pred eEEEEEEEEecCCCCEEEEEEcc-----CceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLG-----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~-----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
++|.++++..+ ..|||+|+. .+.|.+|||.+++||+..+|+.||+.||+|..
T Consensus 3 ~~v~v~~~~~~---~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~ 59 (137)
T cd03424 3 DAVAVLPYDDD---GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYE 59 (137)
T ss_pred CEEEEEEEcCC---CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCC
Confidence 45555554322 599998753 25899999999999999999999999999963
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.69 E-value=3.5e-08 Score=75.27 Aligned_cols=48 Identities=31% Similarity=0.540 Sum_probs=39.8
Q ss_pred EEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 79 GVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 79 aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
++++.+++ .+|||.|+.. +.|.||||++++||+..+|+.||+.||.|.
T Consensus 5 ~~vv~~~~--~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl 58 (129)
T cd04699 5 AALIVKDV--GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGL 58 (129)
T ss_pred EEEEECCC--CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCc
Confidence 34444432 4899999863 589999999999999999999999999996
No 55
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=98.69 E-value=6.1e-08 Score=88.82 Aligned_cols=51 Identities=31% Similarity=0.498 Sum_probs=44.2
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
..+|.|||+ +++ +|||+|+.. |.|.||||.+++||+..+|++||+.||+|.
T Consensus 203 ~vtv~avv~-~~g---~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl 257 (340)
T PRK05379 203 FVTVDAVVV-QSG---HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGL 257 (340)
T ss_pred ceEEEEEEE-ECC---EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCC
Confidence 567777775 333 999999863 689999999999999999999999999996
No 56
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.66 E-value=9.7e-08 Score=76.92 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=43.6
Q ss_pred EEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 79 GVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 79 aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
++++..+.+...||+.|.+.+.|.||||.+++||+..++++||+.||+|.
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl 53 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGL 53 (126)
T ss_pred EEEEEeCCceEEEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCC
Confidence 34445666678999999888889999999999999999999999999996
No 57
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.64 E-value=1.3e-07 Score=76.75 Aligned_cols=51 Identities=25% Similarity=0.383 Sum_probs=43.1
Q ss_pred EEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+.+||+++.+ .+|||.|+.. +.|.||||.+++||+..+++.||+.||+|..
T Consensus 3 ~v~viv~~~~--~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~ 59 (143)
T cd04694 3 GVAVLLQSSD--QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLT 59 (143)
T ss_pred EEEEEEEcCC--CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCC
Confidence 5566766554 4899999863 5799999999999999999999999999973
No 58
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=98.64 E-value=1.2e-07 Score=77.34 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=45.6
Q ss_pred CceeEEEEEEEEecCCCCEEEEEEccC--ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 72 GMRRSVDGVLLVHEHGLPHVLMLQLGT--TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 72 GmRrsV~aVilvh~~~~phVLLLQ~~~--~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
..|.+|.++++..++ +|||.|+.. +.|.||||.+++||+..+++.||+.||+|.
T Consensus 6 ~~~~~v~~~i~~~~g---~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~ 61 (156)
T PRK00714 6 GYRPNVGIILLNRQG---QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGL 61 (156)
T ss_pred CCCCeEEEEEEecCC---EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 357777777664343 899999853 689999999999999999999999999996
No 59
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.63 E-value=2.2e-07 Score=73.74 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=54.3
Q ss_pred EEEEEEcc----CceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCCCCCCCCCCCC------
Q psy16776 90 HVLMLQLG----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVP------ 159 (214)
Q Consensus 90 hVLLLQ~~----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~Fe~~~yPYlP------ 159 (214)
.+||+++. .+.|.||||++++||+..+++.||+.||+|..-. ...+ ..++....++....++-|.+
T Consensus 16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~---~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (118)
T cd04674 16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD---PADI-RLFDVRSAPDGTLLVFGLLPERRAAD 91 (118)
T ss_pred CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc---ccEE-EEEEEEecCCCeEEEEEEEecccccc
Confidence 47777774 3799999999999999999999999999996311 0111 12223333444444454443
Q ss_pred -CCCCCccceeEEEeeeCCC
Q psy16776 160 -VHITSPKEHRRLFLVQLPE 178 (214)
Q Consensus 160 -~Hit~PKE~~klf~V~Lpe 178 (214)
+..+..-|....+.|..++
T Consensus 92 ~~~~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 92 LPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred CCCCCCCcceeeEEEccCCc
Confidence 2233455666666666644
No 60
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.63 E-value=7.8e-08 Score=74.46 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=40.1
Q ss_pred EEEEEEEEecCCCCEEEEEEccC------ceeeeC-CccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT------TFFKLP-GGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~------~~f~LP-GGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.|.++++ ++. .+|||.|+.. |.|.+| ||++++||+. +|++||+.||+|..
T Consensus 2 ~v~v~~~-~~~--g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~ 58 (127)
T cd04693 2 VVHVCIF-NSK--GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLE 58 (127)
T ss_pred eEEEEEE-eCC--CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCC
Confidence 3555554 333 3899988863 689998 9999999999 99999999999973
No 61
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.62 E-value=8.5e-08 Score=75.85 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=37.1
Q ss_pred CCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 88 LPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 88 ~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
...|||+|+.. +.|.||||++++||+..+|++||+.||+|.
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl 55 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGN 55 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCC
Confidence 45789999853 689999999999999999999999999996
No 62
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=98.62 E-value=2e-07 Score=78.01 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=46.0
Q ss_pred hcCceeEEEEEEEEecCCCCEEEEEEccC------cee-eeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 70 KIGMRRSVDGVLLVHEHGLPHVLMLQLGT------TFF-KLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 70 ~~GmRrsV~aVilvh~~~~phVLLLQ~~~------~~f-~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
..|+++.+.+|++... .-.|||.|+.+ |.| .+|||++++||+..+|+.|||.||+|..
T Consensus 32 ~~~~~h~~~~v~v~~~--~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~ 96 (180)
T PRK15393 32 AQCLRHRATYIVVHDG--MGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIA 96 (180)
T ss_pred hCCCceEEEEEEEECC--CCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3588777777777543 34899888853 223 6899999999999999999999999974
No 63
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=98.62 E-value=7.3e-08 Score=75.99 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=41.3
Q ss_pred EEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|..|++.++ ..+|||+|+.. +.|.||||++++||+..+++.||+.||+|.
T Consensus 2 ~v~i~l~~~--~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl 54 (131)
T cd03429 2 AVIVLVIDG--GDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGI 54 (131)
T ss_pred eEEEEEEeC--CCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCc
Confidence 344444433 25999999863 689999999999999999999999999996
No 64
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=98.61 E-value=2.5e-07 Score=77.38 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHhhcCceeEEEEEEEEecCCCCEEEEEEccCceeeeC-------CccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 67 EFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLP-------GGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 67 ~y~~~GmRrsV~aVilvh~~~~phVLLLQ~~~~~f~LP-------GGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.....|.++.+.+|++++.. -+|||.|++.+.+.+| ||++++||+..+|++|||.||+|..
T Consensus 26 ~~~~~~~~h~av~v~i~~~~--g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~ 93 (184)
T PRK03759 26 AHTADTPLHLAFSCYLFDAD--GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVE 93 (184)
T ss_pred HHhcCCCeeeEEEEEEEcCC--CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 34567888888888887654 4799999876555555 5999999999999999999999973
No 65
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.56 E-value=2.1e-07 Score=74.05 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=44.6
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC------ceeee-CCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT------TFFKL-PGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~------~~f~L-PGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
++|...|+-.+++..+||+.||.. |.|.+ |||.+++||+..+++.|||.||+|..
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~ 64 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLD 64 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCC
Confidence 455655554555567999988874 57888 69999999999999999999999973
No 66
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=98.54 E-value=4.6e-07 Score=67.74 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=40.9
Q ss_pred EEEEEEEecCCCCEEEEEEcc-----CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLG-----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~-----~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|.+++++++. -+|||.|+. .|.|.||||.++++|+..+++.|++.||+|.
T Consensus 3 ~~~~~i~~~~--~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~ 57 (124)
T cd03425 3 VVAAIIIDDD--GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGI 57 (124)
T ss_pred EEEEEEECCC--CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCc
Confidence 4445554442 489999886 3689999999999999999999999999995
No 67
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=98.51 E-value=3.5e-07 Score=74.91 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=43.5
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccC------ceeeeC-CccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGT------TFFKLP-GGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~------~~f~LP-GGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.++.+.+|++...+ .+|||.||.. |.|.+| ||.+++||+..++++||+.||+|..
T Consensus 28 ~~~~~v~v~i~~~~--~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~ 89 (165)
T cd02885 28 LLHRAFSVFLFNSK--GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGIT 89 (165)
T ss_pred cceeEEEEEEEcCC--CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 33677777766544 4799999876 455554 6999999999999999999999973
No 68
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=98.51 E-value=1.4e-06 Score=64.14 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=42.2
Q ss_pred EEEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+|.+++. +.. -+|||.|+.. +.|.+|||.++.||+..+++.||+.||+|..
T Consensus 2 ~~~~i~~-~~~--~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~ 55 (123)
T cd02883 2 AVGAVIL-DED--GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLD 55 (123)
T ss_pred ceEEEEE-CCC--CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCcc
Confidence 4445553 332 4899999886 8999999999999999999999999999963
No 69
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=98.45 E-value=7.3e-07 Score=74.59 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=36.5
Q ss_pred CCEEEEEEcc-----CceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 88 LPHVLMLQLG-----TTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 88 ~phVLLLQ~~-----~~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.-+|||++.- ...|.||||.+++||+..++++|||.||.|..
T Consensus 58 ~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~ 104 (185)
T PRK11762 58 DDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFG 104 (185)
T ss_pred CCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCC
Confidence 3479988862 35799999999999999999999999999973
No 70
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.43 E-value=4.9e-07 Score=70.46 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=40.7
Q ss_pred EEEEEEEEecCCCCEEEEEEccC------ceeee-CCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQLGT------TFFKL-PGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~~~------~~f~L-PGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+|.++++ +.+ -+||+.|+.. |.|.+ |||++++||+..++++||+.||+|..
T Consensus 2 ~~~v~i~-~~~--~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~ 59 (126)
T cd04697 2 ATYIFVF-NSE--GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGID 59 (126)
T ss_pred eEEEEEE-cCC--CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 4556665 333 4899988763 56888 79999999999999999999999963
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.39 E-value=1.2e-06 Score=70.81 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=40.3
Q ss_pred EEEEE-ecCCCCEEEEEEc--------cCceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 79 GVLLV-HEHGLPHVLMLQL--------GTTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 79 aVilv-h~~~~phVLLLQ~--------~~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|+++. .+.+...|||+++ ..+.|.||||.++.||+..++++||+.||+|.
T Consensus 4 g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl 62 (126)
T cd04662 4 GILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGF 62 (126)
T ss_pred EEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCC
Confidence 34433 3445567888873 24789999999999999999999999999997
No 72
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=64.67 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCCEEEEEEccCc--eeeeCCccccCCCCHHH-HHHHHHHhhhCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQLGTT--FFKLPGGELNQGEDEIE-GLKRLLSDTLGR 128 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~~~~--~f~LPGGrle~GE~e~e-gLkReL~EeLg~ 128 (214)
+..++++.... ..||+.++... .|.||||++++||+..+ |++||+.||+|.
T Consensus 13 ~~~~~~~~~~~-~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl 66 (161)
T COG0494 13 AVAVLVGRDGP-GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66 (161)
T ss_pred eEEEEEecCCC-CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCC
Confidence 33444433333 79999998864 89999999999999988 999999999996
No 73
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=98.32 E-value=1.1e-06 Score=78.16 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=36.8
Q ss_pred CEEEEEEcc---CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 89 PHVLMLQLG---TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 89 phVLLLQ~~---~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
-+|||.|+. .+.|.||||.+++||+.+++++||+.||+|.
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl 185 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGI 185 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCc
Confidence 489999875 4789999999999999999999999999996
No 74
>PRK08999 hypothetical protein; Provisional
Probab=98.31 E-value=1.9e-06 Score=76.66 Aligned_cols=40 Identities=28% Similarity=0.566 Sum_probs=36.5
Q ss_pred EEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 90 HVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 90 hVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+|||.|+.. |.|.||||++++||+..+++.||+.||+|..
T Consensus 18 ~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~ 62 (312)
T PRK08999 18 RILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62 (312)
T ss_pred eEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCc
Confidence 799998863 6999999999999999999999999999963
No 75
>KOG2839|consensus
Probab=98.30 E-value=2.5e-06 Score=70.64 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=70.6
Q ss_pred HHhhcCceeEEEEEEEEecCCCCEEEEEEccC--ceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEE
Q psy16776 67 EFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGT--TFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144 (214)
Q Consensus 67 ~y~~~GmRrsV~aVilvh~~~~phVLLLQ~~~--~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~ 144 (214)
.|+..|.|.-+-+|++--+.+.-.|||++... -.|-+|+|.++++|+..|+..||-.||-|. .=.++++++.
T Consensus 2 ry~~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv------~G~l~~~~~g 75 (145)
T KOG2839|consen 2 RYDPAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGV------KGKLGRLLGG 75 (145)
T ss_pred ccCCCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCc------eeeeeccccc
Confidence 47788988888887775555567999999876 389999999999999999999999999995 4467787777
Q ss_pred EecCCCCCCCCCCCCCCCCCcccee
Q psy16776 145 WWRPNFEPPQYPYVPVHITSPKEHR 169 (214)
Q Consensus 145 wwRp~Fe~~~yPYlP~Hit~PKE~~ 169 (214)
+|.-.+ ..|.++||-..
T Consensus 76 ~~~~~~--------~~~~~~~k~~~ 92 (145)
T KOG2839|consen 76 FEDFLS--------KKHRTKPKGVM 92 (145)
T ss_pred hhhccC--------hhhccccccee
Confidence 775432 46777766554
No 76
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=98.23 E-value=3.8e-06 Score=68.60 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=45.9
Q ss_pred hhcCceeEEEEEEEEecCCCCEEEEEEccC------ceeeeC-CccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 69 EKIGMRRSVDGVLLVHEHGLPHVLMLQLGT------TFFKLP-GGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 69 ~~~GmRrsV~aVilvh~~~~phVLLLQ~~~------~~f~LP-GGrle~GE~e~egLkReL~EeLg~~ 129 (214)
...|+++.+.+|++++.+ -+|||.||+. |.|.+| ||.+++|| .+|+.||+.||+|..
T Consensus 21 ~~~g~~h~~v~v~v~~~~--g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~ 84 (158)
T TIGR02150 21 LQETPLHRAFSVFLFNEE--GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIP 84 (158)
T ss_pred hcCCCeEEEEEEEEEcCC--CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCC
Confidence 356898888888887554 3799999876 566665 69999999 499999999999974
No 77
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.11 E-value=4.6e-06 Score=71.32 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCCCEEEEEEccC-ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 86 HGLPHVLMLQLGT-TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 86 ~~~phVLLLQ~~~-~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.+...||++|+.. +.|.||||.+++||+..++++|||.||.+.
T Consensus 46 ~~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l 89 (186)
T cd03670 46 KPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALN 89 (186)
T ss_pred CCeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcc
Confidence 5577999999874 799999999999999999999999999963
No 78
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.06 E-value=1.4e-05 Score=67.54 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=61.2
Q ss_pred EEEEEEecCCCCEEEEEEc----------cCceeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEec
Q psy16776 78 DGVLLVHEHGLPHVLMLQL----------GTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWR 147 (214)
Q Consensus 78 ~aVilvh~~~~phVLLLQ~----------~~~~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwR 147 (214)
.+||+. ..+..+|||++. ....|.||||.+++||+..++..|||.||.|..- .+|+ +++.++.
T Consensus 47 v~vl~~-~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~---~~~~---~~~~~~~ 119 (185)
T TIGR00052 47 AAVLLY-DPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQV---KNLR---KLLSFYS 119 (185)
T ss_pred EEEEEE-ECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHcccccccee---cceE---EEEEEEc
Confidence 344443 333458888885 2347899999999999999999999999999632 1232 4554432
Q ss_pred CCCCCCCCCCCCCCCCCccceeEEEeeeCCCC--CC-------CCceEEeecccccc
Q psy16776 148 PNFEPPQYPYVPVHITSPKEHRRLFLVQLPER--VP-------KNYKLVAAPLVELY 195 (214)
Q Consensus 148 p~Fe~~~yPYlP~Hit~PKE~~klf~V~Lpe~--vp-------~n~kL~AvPLfely 195 (214)
+ | ..-.|...+|++++... +. ..+..+-+|+=|+.
T Consensus 120 ~----------~---g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~ 163 (185)
T TIGR00052 120 S----------P---GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQAL 163 (185)
T ss_pred C----------C---CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHH
Confidence 1 1 12246677788775432 11 12355666665554
No 79
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.00 E-value=2.5e-05 Score=64.65 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=48.0
Q ss_pred hhcCceeEEEEE-EEEecCC-CCEEEEEEccC------cee-eeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 69 EKIGMRRSVDGV-LLVHEHG-LPHVLMLQLGT------TFF-KLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 69 ~~~GmRrsV~aV-ilvh~~~-~phVLLLQ~~~------~~f-~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
...|+++.+.-| +++.+.+ .-+|++-||+. |.| .+|||.+++||+..++++||+.||+|+.
T Consensus 26 ~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~ 95 (180)
T cd03676 26 RLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLP 95 (180)
T ss_pred ccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 356887666665 3444332 57899888874 677 6999999999999999999999999974
No 80
>PLN03143 nudix hydrolase; Provisional
Probab=97.99 E-value=3.4e-05 Score=70.22 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=43.2
Q ss_pred eeEEEEEEEE-ecCCCCEEEEEEcc-----CceeeeCCccccCC-CCHHHHHHHHHHhhhCCC
Q psy16776 74 RRSVDGVLLV-HEHGLPHVLMLQLG-----TTFFKLPGGELNQG-EDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 74 RrsV~aVilv-h~~~~phVLLLQ~~-----~~~f~LPGGrle~G-E~e~egLkReL~EeLg~~ 129 (214)
|..++||+++ +..+.++|+|++.- .-.++||||.++++ |+.+++.+|||.||.|..
T Consensus 127 rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~ 189 (291)
T PLN03143 127 RGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIK 189 (291)
T ss_pred cCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCc
Confidence 3335555554 55677888887763 24889999999985 799999999999999974
No 81
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=97.79 E-value=0.00011 Score=63.19 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=39.5
Q ss_pred EEEEEEEEecCCCCEEEEEEc---cC-------ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 76 SVDGVLLVHEHGLPHVLMLQL---GT-------TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 76 sV~aVilvh~~~~phVLLLQ~---~~-------~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.+.+||.+++. ..+|||++- +. -.|.+|+|.+++||+..+|.+|||.||.|..
T Consensus 50 ~~V~il~~~~~-~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~ 112 (202)
T PRK10729 50 HAAVLLPFDPV-RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLI 112 (202)
T ss_pred CeEEEEEEECC-CCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCce
Confidence 34555655432 226777664 11 2689999999999999999999999999963
No 82
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=97.57 E-value=0.0003 Score=52.51 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred CEEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhC
Q psy16776 89 PHVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLG 127 (214)
Q Consensus 89 phVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg 127 (214)
.++|+-||+. |.|.||||+.+.+|++.+++.|++.++++
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 4899999974 69999999999999999999999988875
No 83
>KOG3069|consensus
Probab=97.54 E-value=0.0003 Score=62.64 Aligned_cols=105 Identities=22% Similarity=0.332 Sum_probs=78.3
Q ss_pred eeEEEEEEEEec-CCCCEEEEEEccC------ceeeeCCccccCCCC-HHHHHHHHHHhhhCCCC------C------Cc
Q psy16776 74 RRSVDGVLLVHE-HGLPHVLMLQLGT------TFFKLPGGELNQGED-EIEGLKRLLSDTLGRRD------G------VK 133 (214)
Q Consensus 74 RrsV~aVilvh~-~~~phVLLLQ~~~------~~f~LPGGrle~GE~-e~egLkReL~EeLg~~~------~------~~ 133 (214)
|.+++-|.|+.. .+.-.|||.||.. |...||||+.++++. ++.+..||--||.|... | ..
T Consensus 42 ~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r 121 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR 121 (246)
T ss_pred CCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec
Confidence 688888888877 4556888888863 789999999998874 57799999999999642 1 12
Q ss_pred cceEEeceEEEEecCCCCCCCCCCCCCCCCCccceeEEEeeeCCCC-CCCCce
Q psy16776 134 QEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER-VPKNYK 185 (214)
Q Consensus 134 ~~~eVge~lg~wwRp~Fe~~~yPYlP~Hit~PKE~~klf~V~Lpe~-vp~n~k 185 (214)
.+|.|-..||--....- +|-++-++.||..+|-|.|.+- .|++-+
T Consensus 122 ~~~~v~p~v~~l~~~~~-------l~~~~ln~gEv~~~F~VPL~~ll~~~~~~ 167 (246)
T KOG3069|consen 122 SGWSVFPVVGFLSDKKI-------LPSLRLNSGEVESAFWVPLTDLLLPKHQT 167 (246)
T ss_pred cCcccceeEEEEecccc-------cccccCCchheeeeeeeeHHHHhhhhcch
Confidence 45566666654433221 2888999999999999999877 555544
No 84
>PLN02791 Nudix hydrolase homolog
Probab=97.31 E-value=0.0016 Score=66.34 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=49.6
Q ss_pred HHhhcCceeEEEEEEEEecCCCCEEEEEEccC------ceeee-CCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 67 EFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGT------TFFKL-PGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 67 ~y~~~GmRrsV~aVilvh~~~~phVLLLQ~~~------~~f~L-PGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
.-.+.|+.+.+.-|.|.+.. ...||+-||.. |.|.. +||.++.||+..+++.|||.||||+.
T Consensus 24 evH~~Gl~HrAvhVwIfn~~-~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~ 92 (770)
T PLN02791 24 EVHRDGDYHRAVHVWIYSES-TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGII 92 (770)
T ss_pred hhccCCCceEEEEEEEEECC-CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 34567998888777777542 35787777753 68888 79999999999999999999999974
No 85
>KOG3041|consensus
Probab=97.22 E-value=0.0034 Score=55.04 Aligned_cols=104 Identities=21% Similarity=0.330 Sum_probs=69.2
Q ss_pred eEEEEEEEEecCCCCEEEEEEcc---Cc--eeeeCCccccCCCCHHHHHHHHHHhhhCCCCCCccceEEeceEEEEecCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLG---TT--FFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPN 149 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~---~~--~f~LPGGrle~GE~e~egLkReL~EeLg~~~~~~~~~eVge~lg~wwRp~ 149 (214)
-+|.-+.++...++|||+|.+-- .| -.+||-|-++.|||-+.+..|||.||.|.. | +..
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-g--------kv~------- 137 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-G--------KVD------- 137 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-c--------eee-------
Confidence 34555666788999999998642 34 458999999999999999999999999974 2 111
Q ss_pred CCCCCCCCCCCCCCCccceeEEEeee--CCCC---CCC--C---ceEEeecccccc
Q psy16776 150 FEPPQYPYVPVHITSPKEHRRLFLVQ--LPER---VPK--N---YKLVAAPLVELY 195 (214)
Q Consensus 150 Fe~~~yPYlP~Hit~PKE~~klf~V~--Lpe~---vp~--n---~kL~AvPLfely 195 (214)
+....-|+=|-.|...+|+-++.|. .||. ++. . .+...||+-+|.
T Consensus 138 -~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~ 192 (225)
T KOG3041|consen 138 -MVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELW 192 (225)
T ss_pred -eccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHH
Confidence 1111222233447888888888874 4665 222 1 345566666654
No 86
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=96.95 E-value=0.004 Score=53.13 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=36.0
Q ss_pred EEEEEEEecCCCCEEEEEEc---c-------C-ceeeeCCccccCCCCHHHHHHHHHHhhhCCC
Q psy16776 77 VDGVLLVHEHGLPHVLMLQL---G-------T-TFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129 (214)
Q Consensus 77 V~aVilvh~~~~phVLLLQ~---~-------~-~~f~LPGGrle~GE~e~egLkReL~EeLg~~ 129 (214)
+.+|++... +.-+|+|++- + + -.|+||+|.+++| ++.+|.+|||.||.|..
T Consensus 47 ~v~Vl~~~~-~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~ 108 (191)
T PRK15009 47 GATILLYNA-KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYE 108 (191)
T ss_pred EEEEEEEEC-CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCc
Confidence 444554432 2336777664 1 1 2589999999976 68999999999999974
No 87
>KOG0648|consensus
Probab=96.52 E-value=0.0035 Score=57.43 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=42.3
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC------ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT------TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~------~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|..|-|.++ +++ -+||++|..+ |.|++|+|++++||+-..|+.||..|+.|+
T Consensus 115 ~vgvg~~V~--n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgi 172 (295)
T KOG0648|consen 115 RVGVGAFVL--NKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGI 172 (295)
T ss_pred heeeeeeEe--cCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCc
Confidence 445555554 333 6999999643 689999999999999999999999999995
No 88
>KOG4195|consensus
Probab=96.38 E-value=0.0037 Score=55.74 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=33.6
Q ss_pred CEEEEEEcc-CceeeeCCccccCCCCHHHHHHHHHHhhh
Q psy16776 89 PHVLMLQLG-TTFFKLPGGELNQGEDEIEGLKRLLSDTL 126 (214)
Q Consensus 89 phVLLLQ~~-~~~f~LPGGrle~GE~e~egLkReL~EeL 126 (214)
-.++.+|+. ++.|.+|||-.+|||.--..||||+.||-
T Consensus 139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 467788887 58999999999999999999999998864
No 89
>KOG3084|consensus
Probab=96.37 E-value=0.0067 Score=56.33 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=42.7
Q ss_pred EEEEEecCCCCEEEEEEcc---CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 79 GVLLVHEHGLPHVLMLQLG---TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 79 aVilvh~~~~phVLLLQ~~---~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.|+++-+|+.-|.||-+.. .|.|..+-|-+||||+-+||..||.-||.|+
T Consensus 190 VIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi 242 (345)
T KOG3084|consen 190 VIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGI 242 (345)
T ss_pred EEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCc
Confidence 4444557888888887754 4899999999999999999999999999996
No 90
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=96.34 E-value=0.0068 Score=55.21 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred eeEEEEEEEEecCCCCEEEEEEccC---ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 74 RRSVDGVLLVHEHGLPHVLMLQLGT---TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 74 RrsV~aVilvh~~~~phVLLLQ~~~---~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
|+.=..|+++.+++. |||+++.. |.|.+--|-+|+|||-++|..||..||.|+
T Consensus 142 R~dP~vIv~v~~~~~--ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi 197 (279)
T COG2816 142 RIDPCVIVAVIRGDE--ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGI 197 (279)
T ss_pred CCCCeEEEEEecCCc--eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCe
Confidence 555556666666555 99999874 788999999999999999999999999995
No 91
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=96.26 E-value=0.014 Score=52.15 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=41.1
Q ss_pred hcCceeEEEEEEEEecCCCCEEEEEEccCc------ee-----eeCCccccCCC----C---------HHHHHHHHHHhh
Q psy16776 70 KIGMRRSVDGVLLVHEHGLPHVLMLQLGTT------FF-----KLPGGELNQGE----D---------EIEGLKRLLSDT 125 (214)
Q Consensus 70 ~~GmRrsV~aVilvh~~~~phVLLLQ~~~~------~f-----~LPGGrle~GE----~---------e~egLkReL~Ee 125 (214)
..|+.+-|..|+|.+..+ .|||-||... .| ..|++..++|| + ..+|..|||.||
T Consensus 51 ~~gl~Hra~~v~i~n~~g--~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EE 128 (247)
T PLN02552 51 PRGLLHRAFSVFLFNSKY--ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHE 128 (247)
T ss_pred CCCceEEEEEEEEEcCCC--eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHH
Confidence 568988888888876654 7888888753 45 44445444443 1 467999999999
Q ss_pred hCCC
Q psy16776 126 LGRR 129 (214)
Q Consensus 126 Lg~~ 129 (214)
||+.
T Consensus 129 lGI~ 132 (247)
T PLN02552 129 LGIP 132 (247)
T ss_pred hCCC
Confidence 9974
No 92
>PLN02839 nudix hydrolase
Probab=94.06 E-value=0.32 Score=46.07 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=43.6
Q ss_pred Cc-eeEEEEEEEEecCCCCEEEEEEccCcee-------eeCCccccCCCCHHHHHHHHHHhhhCCCC
Q psy16776 72 GM-RRSVDGVLLVHEHGLPHVLMLQLGTTFF-------KLPGGELNQGEDEIEGLKRLLSDTLGRRD 130 (214)
Q Consensus 72 Gm-RrsV~aVilvh~~~~phVLLLQ~~~~~f-------~LPGGrle~GE~e~egLkReL~EeLg~~~ 130 (214)
|+ .++|.-.-+|+..+..++++-||..+.- -+-||.+..||+..|++.||..||.|..+
T Consensus 200 Gi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~ 266 (372)
T PLN02839 200 GIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISK 266 (372)
T ss_pred CceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCH
Confidence 44 4445555555555666888878765322 45679999999999999999999999753
No 93
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=93.17 E-value=0.22 Score=41.34 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=29.4
Q ss_pred CceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 98 TTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 98 ~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
.|.|.+|-|.+..||++..+.+||..||+|+
T Consensus 35 ~GAWSIPKGey~~gEdp~~AArREf~EE~Gi 65 (161)
T COG4119 35 DGAWSIPKGEYTGGEDPWLAARREFSEEIGI 65 (161)
T ss_pred CCcccccccccCCCcCHHHHHHHHhhhhhce
Confidence 4899999999999999999999999999995
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=91.21 E-value=0.33 Score=36.90 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=23.7
Q ss_pred EEEEEEccC-----ceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 90 HVLMLQLGT-----TFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 90 hVLLLQ~~~-----~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
++||-||++ |.|.||.-.++ ++++.+.+.+.+.+.+|.
T Consensus 10 ~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~ 52 (114)
T PF14815_consen 10 RVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGL 52 (114)
T ss_dssp EEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-
T ss_pred EEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCC
Confidence 799999985 79999999988 555577777777777774
No 95
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.14 E-value=5.1 Score=35.15 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=35.8
Q ss_pred CceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHH--HHHhhhCCCCCCccceEEec
Q psy16776 72 GMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR--LLSDTLGRRDGVKQEWIVED 140 (214)
Q Consensus 72 GmRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkR--eL~EeLg~~~~~~~~~eVge 140 (214)
.++..+.+||++|+| |.|-.+|.+.|++-=+| +..+.+|+. ..+.+.||+
T Consensus 155 Al~~~A~~vIlaHNH-----------------PSG~~~PS~~Di~~T~~l~~a~~~lgI~--llDHiIvg~ 206 (218)
T TIGR00608 155 ALKLSASALILAHNH-----------------PSGEPSPSQEDILITERLRKAAELLGIE--LLDHLIIGK 206 (218)
T ss_pred HHHhhCCeEEEEeec-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCCE--EeeEEEEcC
Confidence 478889999999998 88999999999875543 334566642 234555553
No 96
>PRK00024 hypothetical protein; Reviewed
Probab=59.46 E-value=5.9 Score=34.72 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=35.0
Q ss_pred CceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHH--HHHhhhCCCCCCccceEEe
Q psy16776 72 GMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR--LLSDTLGRRDGVKQEWIVE 139 (214)
Q Consensus 72 GmRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkR--eL~EeLg~~~~~~~~~eVg 139 (214)
.++..+.+||++|+| |+|-.+|.+.|++-=+| +..+.+|+. ..+.+.||
T Consensus 161 Al~~~A~~iIl~HNH-----------------PSG~~~PS~~D~~~T~~l~~a~~~l~I~--llDHiIv~ 211 (224)
T PRK00024 161 ALKLNAAALILAHNH-----------------PSGDPEPSQADILITKRLKEAGELLGIR--LLDHIIIG 211 (224)
T ss_pred HHHhhccceEEEecC-----------------CCCCCCCCHHHHHHHHHHHHHHHhCCCE--EeeEEEEc
Confidence 478889999999998 88999999999874433 334566642 23455555
No 97
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=58.56 E-value=7.3 Score=30.48 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=34.6
Q ss_pred CceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHHHHHH---hhhCCCCCCccceEEe
Q psy16776 72 GMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLS---DTLGRRDGVKQEWIVE 139 (214)
Q Consensus 72 GmRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLkReL~---EeLg~~~~~~~~~eVg 139 (214)
.++..+.+|+++|.| |+|-++|.+.|++.- ++|. +.+|.. ..+.+-||
T Consensus 55 aL~~~A~~vil~HNH-----------------PsG~~~PS~~D~~~T-~~l~~~~~~l~i~--llDHiIi~ 105 (113)
T cd08071 55 ALRHNAAAIILAHNH-----------------PSGDPTPSREDIELT-KRLKEAGELLGIR--LLDHIIVG 105 (113)
T ss_pred HHHHhhheEEEEeeC-----------------CCCCCCCCHHHHHHH-HHHHHHHHHCCCE--EeeEEEEc
Confidence 478889999999998 889999999998866 4443 455532 23445554
No 98
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=56.93 E-value=17 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=36.6
Q ss_pred eEEEEEEEEecCCCCEEEEEEccCceeeeCC-------ccccCCCCHHHHHHHHHHhhhCCCC
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGTTFFKLPG-------GELNQGEDEIEGLKRLLSDTLGRRD 130 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~~~f~LPG-------Grle~GE~e~egLkReL~EeLg~~~ 130 (214)
+-+-.+.|- +..-.+|+.||+...-..|| |-=-+||+-+++..|+|..|||++.
T Consensus 33 HrAFS~~lF--ne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~ 93 (185)
T COG1443 33 HRAFSSFLF--NERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEP 93 (185)
T ss_pred HhhhheeEE--CCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCC
Confidence 334444443 33458888888764444444 1112899999999999999999753
No 99
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=36.67 E-value=26 Score=26.35 Aligned_cols=18 Identities=33% Similarity=0.239 Sum_probs=15.0
Q ss_pred cccCCCCHHHHHHHHHHh
Q psy16776 107 ELNQGEDEIEGLKRLLSD 124 (214)
Q Consensus 107 rle~GE~e~egLkReL~E 124 (214)
.|+.|++++|||.|.+.-
T Consensus 51 ~Ceg~~~eEECL~RRtL~ 68 (81)
T PF06404_consen 51 SCEGGEGEEECLMRRTLA 68 (81)
T ss_pred cccCCCCchHHHHHHHHH
Confidence 678779999999998754
No 100
>KOG2937|consensus
Probab=35.56 E-value=7.1 Score=36.81 Aligned_cols=56 Identities=16% Similarity=0.384 Sum_probs=42.6
Q ss_pred CceeEEEEEEEEecCCCCEEEEEE-ccCceeeeCCccccCCCCHHHHHHHHHHhhhCC
Q psy16776 72 GMRRSVDGVLLVHEHGLPHVLMLQ-LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128 (214)
Q Consensus 72 GmRrsV~aVilvh~~~~phVLLLQ-~~~~~f~LPGGrle~GE~e~egLkReL~EeLg~ 128 (214)
-.|.-|-|.++- +...-.+||++ -....|.+|-|++...|.+..|..|+..|+.|.
T Consensus 79 k~~iPv~ga~il-d~~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgf 135 (348)
T KOG2937|consen 79 KARIPVRGAIIL-DEKRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGF 135 (348)
T ss_pred cCCCCCchHhhh-hhhhhhhheeeceecccccccCccccccchhhhcchhcccchhhc
Confidence 356767666665 34455555555 234579999999999999999999999999985
No 101
>KOG4548|consensus
Probab=34.55 E-value=78 Score=28.99 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=31.9
Q ss_pred EEEEEEcc---CceeeeCCccc-cCCCCHHHHHHHHHHhhhC
Q psy16776 90 HVLMLQLG---TTFFKLPGGEL-NQGEDEIEGLKRLLSDTLG 127 (214)
Q Consensus 90 hVLLLQ~~---~~~f~LPGGrl-e~GE~e~egLkReL~EeLg 127 (214)
=+||+++. .++|.||.+.+ ++|++-..+..|.|....|
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~g 181 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSG 181 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhc
Confidence 46777743 46999999999 8999999999999998877
No 102
>PF06453 LT-IIB: Type II heat-labile enterotoxin , B subunit (LT-IIB); InterPro: IPR010503 These are B subunits from the type II heat-labile enterotoxin. The B subunits form a pentameric ring, which interacts with one A subunit. Thus, the structural arrangement of type I and type II heat-labile enterotoxins are very similar [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TII_F 1QCB_E 1QB5_D.
Probab=30.87 E-value=2.1e+02 Score=23.06 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=28.9
Q ss_pred HHhHHHHhhcCceeEEEEEEEEe-----cCCCCEEEEEEccCceeeeCCccccCC
Q psy16776 62 QRMRDEFEKIGMRRSVDGVLLVH-----EHGLPHVLMLQLGTTFFKLPGGELNQG 111 (214)
Q Consensus 62 ~rl~~~y~~~GmRrsV~aVilvh-----~~~~phVLLLQ~~~~~f~LPGGrle~G 111 (214)
+.++++++.. .-.-|++|=|+. ..+.--|-+.-..++.|+.|||+.-|.
T Consensus 27 ~~Fkd~C~~T-TA~iV~~V~L~k~~sDvN~~t~GiYv~sstG~~w~Ipgg~~YPd 80 (122)
T PF06453_consen 27 KHFKDNCNST-TAKIVQGVQLVKYISDVNKNTKGIYVVSSTGGVWFIPGGQDYPD 80 (122)
T ss_dssp HHHHHHHTTS-SSEEEEEE-EEEEEEE-STTT-EEEEEETTS-EEEE---SSTTH
T ss_pred HHHHhhhhhh-HHHHHhhhhhhhhhhhccCCCCcEEEEeCCCCeEEccCCCcCch
Confidence 4567777755 234566665552 355667777777788999999998874
No 103
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=29.65 E-value=28 Score=27.45 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=21.8
Q ss_pred ceeEEEEEEEEecCCCCEEEEEEccCceeeeCCccccCCCCHHHHHH--HHHHhhhCC
Q psy16776 73 MRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLK--RLLSDTLGR 128 (214)
Q Consensus 73 mRrsV~aVilvh~~~~phVLLLQ~~~~~f~LPGGrle~GE~e~egLk--ReL~EeLg~ 128 (214)
++..+.+||++|.| |+|..+|.+.|++--+ ++..+.+|+
T Consensus 61 l~~~A~~vIl~HNH-----------------PsG~~~PS~~D~~~T~~L~~~~~~l~I 101 (123)
T PF04002_consen 61 LRLNASSVILAHNH-----------------PSGDPEPSDADIALTRRLKKAARLLGI 101 (123)
T ss_dssp HHTT-SEEEEEEE------------------TTS--S--HHHHHHHHHHHHHHHHHT-
T ss_pred HhhCCceEEEEEEc-----------------CCCCCCCCHhHHHHHHHHHHHHHHcCC
Confidence 56678899999998 7899999887765332 333445553
No 104
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=23.93 E-value=1.9e+02 Score=26.15 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=19.0
Q ss_pred eEEEEEEEEecCCCCEEEEEEccC-----ceeeeCCc
Q psy16776 75 RSVDGVLLVHEHGLPHVLMLQLGT-----TFFKLPGG 106 (214)
Q Consensus 75 rsV~aVilvh~~~~phVLLLQ~~~-----~~f~LPGG 106 (214)
+.+.++++.+ +...+|+.|+++ |.|.||+.
T Consensus 227 ~~~~~~~~~~--~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 227 RTTYFLVLQN--YDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEEEEe--CCCeEEEEeCCCCchhhccccCCCC
Confidence 3344444433 234899999874 68889974
No 105
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.94 E-value=79 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.7
Q ss_pred eeeeCCccccCCCCHHHHHHHHHHhhhC
Q psy16776 100 FFKLPGGELNQGEDEIEGLKRLLSDTLG 127 (214)
Q Consensus 100 ~f~LPGGrle~GE~e~egLkReL~EeLg 127 (214)
-|-+|||++-..--..+-+..+++++..
T Consensus 23 GWl~Pgg~vi~NPlkAqR~AE~~n~~~~ 50 (60)
T PF07026_consen 23 GWLMPGGKVITNPLKAQRLAEELNSKQV 50 (60)
T ss_pred eeecCCCeeEcCHHHHHHHHHHHHhhHh
Confidence 5999999999887777777777777664
Done!