Your job contains 1 sequence.
>psy16776
QLNSKFYPPSNSTLVTVNRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPAR
FQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR
LLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPERV
PKNYKLVAAPLVELYDNSQGYGPIISSLPQALCR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16776
(214 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035987 - symbol:CG3689 species:7227 "Drosophila m... 872 2.9e-87 1
ZFIN|ZDB-GENE-040426-1316 - symbol:cpsf5 "cleavage and po... 814 4.1e-81 1
UNIPROTKB|Q6DJE4 - symbol:cpsf5 "Cleavage and polyadenyla... 800 1.2e-79 1
UNIPROTKB|Q3ZCA2 - symbol:NUDT21 "Cleavage and polyadenyl... 797 2.6e-79 1
UNIPROTKB|E2QUJ4 - symbol:NUDT21 "Uncharacterized protein... 797 2.6e-79 1
UNIPROTKB|O43809 - symbol:NUDT21 "Cleavage and polyadenyl... 797 2.6e-79 1
UNIPROTKB|Q5RAI8 - symbol:NUDT21 "Cleavage and polyadenyl... 797 2.6e-79 1
MGI|MGI:1915469 - symbol:Nudt21 "nudix (nucleoside diphos... 797 2.6e-79 1
RGD|1305766 - symbol:Nudt21 "nudix (nucleoside diphosphat... 797 2.6e-79 1
UNIPROTKB|E2R7S0 - symbol:LOC100684233 "Uncharacterized p... 783 7.9e-78 1
UNIPROTKB|E1C538 - symbol:LOC100858636 "Uncharacterized p... 730 3.2e-72 1
WB|WBGene00009668 - symbol:cfim-1 species:6239 "Caenorhab... 708 7.0e-70 1
UNIPROTKB|Q93716 - symbol:cfim-1 "Protein CFIM-1" species... 708 7.0e-70 1
UNIPROTKB|H3BND3 - symbol:NUDT21 "Cleavage and polyadenyl... 654 3.7e-64 1
UNIPROTKB|I3LKQ2 - symbol:I3LKQ2 "Uncharacterized protein... 550 3.8e-53 1
UNIPROTKB|I3LP27 - symbol:I3LP27 "Uncharacterized protein... 550 3.8e-53 1
TAIR|locus:2131839 - symbol:AT4G25550 species:3702 "Arabi... 533 2.4e-51 1
UNIPROTKB|J9NUR8 - symbol:J9NUR8 "Uncharacterized protein... 515 2.0e-49 1
DICTYBASE|DDB_G0269370 - symbol:DDB_G0269370 "cleavage an... 431 1.6e-40 1
ASPGD|ASPL0000011699 - symbol:AN8045 species:162425 "Emer... 423 1.1e-39 1
TAIR|locus:2123919 - symbol:CFIM-25 "homolog of CFIM-25" ... 407 5.5e-38 1
UNIPROTKB|H3BV41 - symbol:NUDT21 "Cleavage and polyadenyl... 306 2.8e-27 1
UNIPROTKB|J9P0U4 - symbol:J9P0U4 "Uncharacterized protein... 151 2.6e-23 2
>FB|FBgn0035987 [details] [associations]
symbol:CG3689 species:7227 "Drosophila melanogaster"
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 EMBL:AE014296 Gene3D:3.90.79.10
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0006379
GO:GO:0005849 eggNOG:NOG294795 GeneTree:ENSGT00390000015814
KO:K14397 OMA:ELNAGED PANTHER:PTHR13047 RefSeq:NP_001036597.1
UniGene:Dm.1951 ProteinModelPortal:Q0E8G6 SMR:Q0E8G6 STRING:Q0E8G6
PaxDb:Q0E8G6 PRIDE:Q0E8G6 EnsemblMetazoa:FBtr0110863 GeneID:39083
KEGG:dme:Dmel_CG3689 UCSC:CG3689-RC FlyBase:FBgn0035987
OrthoDB:EOG47M0DX PhylomeDB:Q0E8G6 GenomeRNAi:39083 NextBio:811825
Bgee:Q0E8G6 Uniprot:Q0E8G6
Length = 237
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 163/201 (81%), Positives = 179/201 (89%)
Query: 18 NRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSV 77
N T ++ L NR NLYPL+NYTF K+PLFEKD SVP+RFQRMR+EF++IGMRRSV
Sbjct: 31 NGTQKYTNQALTINRTINLYPLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSV 90
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
+GVLLVHEHGLPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRLLS+TLGR+DGVKQEWI
Sbjct: 91 EGVLLVHEHGLPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI 150
Query: 138 VEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVE 193
VEDTIGNWWRPNFEPPQYPY+P HIT PKEH+RLFLVQL E+ VPKNYKLVAAPL E
Sbjct: 151 VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKALFAVPKNYKLVAAPLFE 210
Query: 194 LYDNSQGYGPIISSLPQALCR 214
LYDNSQGYGPIISSLPQALCR
Sbjct: 211 LYDNSQGYGPIISSLPQALCR 231
>ZFIN|ZDB-GENE-040426-1316 [details] [associations]
symbol:cpsf5 "cleavage and polyadenylation
specific factor 5" species:7955 "Danio rerio" [GO:0003729 "mRNA
binding" evidence=IEA;ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA;ISS] [GO:0006378 "mRNA polyadenylation"
evidence=IEA;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0042382 "paraspeckles" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000086 InterPro:IPR015797 InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462
ZFIN:ZDB-GENE-040426-1316 Gene3D:3.90.79.10 GO:GO:0003729
GO:GO:0006378 GO:GO:0017091 GO:GO:0016787 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OrthoDB:EOG4QVCCS GO:GO:0042382
PANTHER:PTHR13047 EMBL:BC053172 IPI:IPI00508751 RefSeq:NP_957411.1
UniGene:Dr.80520 ProteinModelPortal:Q7T3C6 SMR:Q7T3C6 STRING:Q7T3C6
PRIDE:Q7T3C6 Ensembl:ENSDART00000023721 GeneID:394092
KEGG:dre:394092 CTD:394092 InParanoid:Q7T3C6 OMA:CLAQWWR
NextBio:20815048 ArrayExpress:Q7T3C6 Bgee:Q7T3C6 Uniprot:Q7T3C6
Length = 228
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 149/201 (74%), Positives = 173/201 (86%)
Query: 18 NRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSV 77
N+ I +K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EFEKIGMRR+V
Sbjct: 22 NKYITQATKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTV 81
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
+GVL+VHEH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGVKQ+W+
Sbjct: 82 EGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVKQDWV 141
Query: 138 VEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVE 193
++D IGNWWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL E
Sbjct: 142 IDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFE 201
Query: 194 LYDNSQGYGPIISSLPQALCR 214
LYDN+ GYGPIISSLPQ L R
Sbjct: 202 LYDNAPGYGPIISSLPQLLSR 222
>UNIPROTKB|Q6DJE4 [details] [associations]
symbol:cpsf5 "Cleavage and polyadenylation specificity
factor subunit 5" species:8355 "Xenopus laevis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378
GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 CTD:11051
HOVERGEN:HBG052968 KO:K14397 GO:GO:0042382 PANTHER:PTHR13047
EMBL:BC075235 RefSeq:NP_001086401.1 UniGene:Xl.77967
ProteinModelPortal:Q6DJE4 SMR:Q6DJE4 GeneID:444830 KEGG:xla:444830
Xenbase:XB-GENE-921424 Uniprot:Q6DJE4
Length = 227
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 145/194 (74%), Positives = 170/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV+Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVQQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>UNIPROTKB|Q3ZCA2 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9913 "Bos taurus" [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0017091
"AU-rich element binding" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0051262 "protein tetramerization"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 GO:GO:0005813
GO:GO:0051262 Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378
GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 EMBL:BC102697
IPI:IPI00716517 RefSeq:NP_001030408.1 UniGene:Bt.103726
ProteinModelPortal:Q3ZCA2 SMR:Q3ZCA2 STRING:Q3ZCA2 PRIDE:Q3ZCA2
Ensembl:ENSBTAT00000013467 GeneID:518859 KEGG:bta:518859 CTD:11051
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 InParanoid:Q3ZCA2 KO:K14397 OMA:ELNAGED
OrthoDB:EOG4QVCCS NextBio:20872752 GO:GO:0042382 PANTHER:PTHR13047
Uniprot:Q3ZCA2
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>UNIPROTKB|E2QUJ4 [details] [associations]
symbol:NUDT21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0016787
GO:GO:0005849 CTD:11051 GeneTree:ENSGT00390000015814 KO:K14397
PANTHER:PTHR13047 EMBL:AAEX03001584 RefSeq:XP_535298.2
ProteinModelPortal:E2QUJ4 SMR:E2QUJ4 PRIDE:E2QUJ4
Ensembl:ENSCAFT00000035716 GeneID:478123 KEGG:cfa:478123
OMA:AINRIIN NextBio:20853493 Uniprot:E2QUJ4
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>UNIPROTKB|O43809 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IDA;TAS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042382
"paraspeckles" evidence=IDA] [GO:0042826 "histone deacetylase
binding" evidence=IPI] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005849
"mRNA cleavage factor complex" evidence=IDA] [GO:0051262 "protein
tetramerization" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_71 InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 EMBL:AJ001810
GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10 Reactome:REACT_1675
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005849 CTD:11051 eggNOG:NOG294795 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:CR456919 EMBL:BX537360
EMBL:AC092140 EMBL:BC001403 IPI:IPI00646917 RefSeq:NP_008937.1
UniGene:Hs.528834 PDB:2CL3 PDB:2J8Q PDB:3BAP PDB:3BHO PDB:3MDG
PDB:3MDI PDB:3N9U PDB:3P5T PDB:3P6Y PDB:3Q2S PDB:3Q2T PDBsum:2CL3
PDBsum:2J8Q PDBsum:3BAP PDBsum:3BHO PDBsum:3MDG PDBsum:3MDI
PDBsum:3N9U PDBsum:3P5T PDBsum:3P6Y PDBsum:3Q2S PDBsum:3Q2T
ProteinModelPortal:O43809 SMR:O43809 DIP:DIP-42502N IntAct:O43809
MINT:MINT-5002263 STRING:O43809 PhosphoSite:O43809
UCD-2DPAGE:O43809 PaxDb:O43809 PeptideAtlas:O43809 PRIDE:O43809
DNASU:11051 Ensembl:ENST00000300291 GeneID:11051 KEGG:hsa:11051
UCSC:uc002eja.3 GeneCards:GC16M056463 HGNC:HGNC:13870 HPA:HPA019863
MIM:604978 neXtProt:NX_O43809 PharmGKB:PA26845 InParanoid:O43809
PhylomeDB:O43809 ChiTaRS:NUDT21 EvolutionaryTrace:O43809
GenomeRNAi:11051 NextBio:41991 ArrayExpress:O43809 Bgee:O43809
CleanEx:HS_NUDT21 Genevestigator:O43809 GermOnline:ENSG00000167005
Uniprot:O43809
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>UNIPROTKB|Q5RAI8 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation specificity
factor subunit 5" species:9601 "Pongo abelii" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0042382 "paraspeckles"
evidence=ISS] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0005849 CTD:11051 GeneTree:ENSGT00390000015814
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED GO:GO:0042382
PANTHER:PTHR13047 EMBL:CR859027 RefSeq:NP_001125721.1
UniGene:Pab.233 ProteinModelPortal:Q5RAI8 SMR:Q5RAI8 PRIDE:Q5RAI8
Ensembl:ENSPPYT00000008659 GeneID:100172645 KEGG:pon:100172645
InParanoid:Q5RAI8 Uniprot:Q5RAI8
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>MGI|MGI:1915469 [details] [associations]
symbol:Nudt21 "nudix (nucleoside diphosphate linked moiety
X)-type motif 21" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0051262 "protein
tetramerization" evidence=ISO] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS00893 PROSITE:PS51462 MGI:MGI:1915469
GO:GO:0005813 GO:GO:0051262 Gene3D:3.90.79.10 GO:GO:0003729
GO:GO:0006378 GO:GO:0017091 GO:GO:0016787 GO:GO:0005849 CTD:11051
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:AK011688 EMBL:AK019433
EMBL:AK146419 EMBL:AK147061 EMBL:AK160147 EMBL:BC008270
EMBL:BC090834 IPI:IPI00132473 RefSeq:NP_080899.1 UniGene:Mm.354445
UniGene:Mm.432611 ProteinModelPortal:Q9CQF3 SMR:Q9CQF3
STRING:Q9CQF3 PhosphoSite:Q9CQF3 PaxDb:Q9CQF3 PRIDE:Q9CQF3
Ensembl:ENSMUST00000034204 GeneID:68219 KEGG:mmu:68219
UCSC:uc009mvo.1 InParanoid:Q9CQF3 NextBio:326730 Bgee:Q9CQF3
Genevestigator:Q9CQF3 GermOnline:ENSMUSG00000031754
GermOnline:ENSMUSG00000039617 Uniprot:Q9CQF3
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>RGD|1305766 [details] [associations]
symbol:Nudt21 "nudix (nucleoside diphosphate linked moiety
X)-type motif 21" species:10116 "Rattus norvegicus" [GO:0003729
"mRNA binding" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005813 "centrosome" evidence=IEA;ISO]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO;ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISO;ISS] [GO:0006397
"mRNA processing" evidence=ISO;ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0042382 "paraspeckles" evidence=ISO;ISS]
[GO:0042803 "protein homodimerization activity" evidence=IEA;ISO]
[GO:0042826 "histone deacetylase binding" evidence=IEA;ISO]
[GO:0051262 "protein tetramerization" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=ISO] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 RGD:1305766 GO:GO:0005813 GO:GO:0051262
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0017091
GO:GO:0016787 GO:GO:0005849 CTD:11051 eggNOG:NOG294795
GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
HOVERGEN:HBG052968 KO:K14397 OMA:ELNAGED OrthoDB:EOG4QVCCS
GO:GO:0042382 PANTHER:PTHR13047 EMBL:BC098748 IPI:IPI00363489
RefSeq:NP_001034093.1 UniGene:Rn.199052 ProteinModelPortal:Q4KM65
SMR:Q4KM65 STRING:Q4KM65 PhosphoSite:Q4KM65 PRIDE:Q4KM65
Ensembl:ENSRNOT00000026297 GeneID:291877 KEGG:rno:291877
UCSC:RGD:1305766 NextBio:633328 ArrayExpress:Q4KM65
Genevestigator:Q4KM65 GermOnline:ENSRNOG00000019444 Uniprot:Q4KM65
Length = 227
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 145/194 (74%), Positives = 169/194 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 207
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 208 YGPIISSLPQLLSR 221
>UNIPROTKB|E2R7S0 [details] [associations]
symbol:LOC100684233 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000086
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03008462
Ensembl:ENSCAFT00000004206 OMA:THTLERT Uniprot:E2R7S0
Length = 234
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 146/205 (71%), Positives = 174/205 (84%)
Query: 17 VNRTIN-LISKNLQYNRKK--NLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGM 73
VN+ N I + L + ++ NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGM
Sbjct: 24 VNQLGNKYIQQTLTHTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGM 83
Query: 74 RRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVK 133
RR+V+GVL+VHEH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV
Sbjct: 84 RRTVEGVLIVHEHQLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVL 143
Query: 134 QEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAA 189
Q+W+++D IGNWWRPNFE PQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAA
Sbjct: 144 QDWVIDDCIGNWWRPNFEHPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAA 203
Query: 190 PLVELYDNSQGYGPIISSLPQALCR 214
PL ELYDN+ GYGPIISSLPQ L R
Sbjct: 204 PLFELYDNAPGYGPIISSLPQLLSR 228
>UNIPROTKB|E1C538 [details] [associations]
symbol:LOC100858636 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=IEA] InterPro:IPR000086
InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0005813 GO:GO:0051262
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0017091
GO:GO:0016787 GO:GO:0005849 GeneTree:ENSGT00390000015814
GO:GO:0042382 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:AADN02051558
EMBL:AADN02051559 EMBL:AADN02051560 IPI:IPI00574813
Ensembl:ENSGALT00000004875 Uniprot:E1C538
Length = 206
Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
Identities = 131/178 (73%), Positives = 156/178 (87%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV+Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVQQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNS 198
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYK VAAPL ELYDN+
Sbjct: 148 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKRVAAPLFELYDNA 205
>WB|WBGene00009668 [details] [associations]
symbol:cfim-1 species:6239 "Caenorhabditis elegans"
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0005849 "mRNA cleavage
factor complex" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000086 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0003729 GO:GO:0006378
GO:GO:0040011 GO:GO:0016787 GO:GO:0040035 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:Z79755 PIR:T22144
RefSeq:NP_492334.1 ProteinModelPortal:Q93716 SMR:Q93716
DIP:DIP-25083N IntAct:Q93716 MINT:MINT-1069440 STRING:Q93716
PaxDb:Q93716 EnsemblMetazoa:F43G9.5 GeneID:172657
KEGG:cel:CELE_F43G9.5 UCSC:F43G9.5 CTD:172657 WormBase:F43G9.5
InParanoid:Q93716 NextBio:876453 Uniprot:Q93716
Length = 227
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 126/189 (66%), Positives = 152/189 (80%)
Query: 30 YNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLP 89
+NR N+YPL+NYTF KD EKD SVP RF+RM+DE+E +GMRRSV+ VL+VHEH LP
Sbjct: 30 FNRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLP 89
Query: 90 HVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPN 149
H+L+LQ+GTTF+KLPGGEL GEDEI G+ RLL++TLGR DG EW +ED IGNWWRPN
Sbjct: 90 HILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIEDEIGNWWRPN 149
Query: 150 FEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQGYGPII 205
F+PP+YPY+P H+T PKEH +L LVQLP + VPKN+KLVAAPL ELYDN+ YGP+I
Sbjct: 150 FDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDNAAAYGPLI 209
Query: 206 SSLPQALCR 214
SSLP L R
Sbjct: 210 SSLPTTLSR 218
>UNIPROTKB|Q93716 [details] [associations]
symbol:cfim-1 "Protein CFIM-1" species:6239 "Caenorhabditis
elegans" [GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR000086 InterPro:IPR016706 Pfam:PF13869
PIRSF:PIRSF017888 PROSITE:PS51462 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0003729 GO:GO:0006378
GO:GO:0040011 GO:GO:0016787 GO:GO:0040035 GO:GO:0005849
eggNOG:NOG294795 GeneTree:ENSGT00390000015814 HOGENOM:HOG000161320
KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR EMBL:Z79755 PIR:T22144
RefSeq:NP_492334.1 ProteinModelPortal:Q93716 SMR:Q93716
DIP:DIP-25083N IntAct:Q93716 MINT:MINT-1069440 STRING:Q93716
PaxDb:Q93716 EnsemblMetazoa:F43G9.5 GeneID:172657
KEGG:cel:CELE_F43G9.5 UCSC:F43G9.5 CTD:172657 WormBase:F43G9.5
InParanoid:Q93716 NextBio:876453 Uniprot:Q93716
Length = 227
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 126/189 (66%), Positives = 152/189 (80%)
Query: 30 YNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLP 89
+NR N+YPL+NYTF KD EKD SVP RF+RM+DE+E +GMRRSV+ VL+VHEH LP
Sbjct: 30 FNRTINVYPLTNYTFGTKDAQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLP 89
Query: 90 HVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPN 149
H+L+LQ+GTTF+KLPGGEL GEDEI G+ RLL++TLGR DG EW +ED IGNWWRPN
Sbjct: 90 HILLLQIGTTFYKLPGGELELGEDEISGVTRLLNETLGRTDGETNEWTIEDEIGNWWRPN 149
Query: 150 FEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQGYGPII 205
F+PP+YPY+P H+T PKEH +L LVQLP + VPKN+KLVAAPL ELYDN+ YGP+I
Sbjct: 150 FDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDNAAAYGPLI 209
Query: 206 SSLPQALCR 214
SSLP L R
Sbjct: 210 SSLPTTLSR 218
>UNIPROTKB|H3BND3 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation-specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000086
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS51462
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
PANTHER:PTHR13047 EMBL:AC092140 HGNC:HGNC:13870 ChiTaRS:NUDT21
Ensembl:ENST00000566340 Bgee:H3BND3 Uniprot:H3BND3
Length = 150
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 116/150 (77%), Positives = 136/150 (90%)
Query: 64 MRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLS 123
MR+EF+KIGMRR+V+GVL+VHEH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL++
Sbjct: 1 MREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT 60
Query: 124 DTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER---- 179
+ LGR+DGV Q+W+++D IGNWWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+
Sbjct: 61 EILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFA 120
Query: 180 VPKNYKLVAAPLVELYDNSQGYGPIISSLP 209
VPKNYKLVAAPL ELYDN+ GYGPIISSLP
Sbjct: 121 VPKNYKLVAAPLFELYDNAPGYGPIISSLP 150
>UNIPROTKB|I3LKQ2 [details] [associations]
symbol:I3LKQ2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA cleavage
factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR015797 InterPro:IPR016706 Pfam:PF13869
Gene3D:3.90.79.10 GO:GO:0003729 GO:GO:0006378 GO:GO:0016787
GO:GO:0005849 GeneTree:ENSGT00390000015814 PANTHER:PTHR13047
Ensembl:ENSSSCT00000032045 OMA:XFNFIYN Uniprot:I3LKQ2
Length = 174
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 97/130 (74%), Positives = 116/130 (89%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 28 TKPLSLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 87
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 88 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 147
Query: 145 WWRPNFEPPQ 154
WWRPNFEPPQ
Sbjct: 148 WWRPNFEPPQ 157
>UNIPROTKB|I3LP27 [details] [associations]
symbol:I3LP27 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 GO:GO:0003729 GO:GO:0006378
GO:GO:0005849 GeneTree:ENSGT00390000015814 PANTHER:PTHR13047
Ensembl:ENSSSCT00000031686 Uniprot:I3LP27
Length = 212
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 113/190 (59%), Positives = 139/190 (73%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+ KDSSV RFQ MR+EF+KIGMRR+V+GVL+VH
Sbjct: 34 TKRLTLERTINLYPLTNYTFGTKEPLY-KDSSVATRFQHMREEFDKIGMRRTVEGVLIVH 92
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQL TTFFKLPGGELN EDE+ G K L+++ LG +DGV Q+W+++D IGN
Sbjct: 93 EHQLPHVLLLQLETTFFKLPGGELNTREDEV-GQKHLMTEILGCQDGVLQDWVIDDCIGN 151
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPERVPKNYKLVAAPLVELYDNSQGYGPI 204
WWRPN + +V + + + LF + PKNYKLVAAPL ELYDN+ YGPI
Sbjct: 152 WWRPN---QKLFWVQL------QEKALFAI------PKNYKLVAAPLFELYDNAPRYGPI 196
Query: 205 ISSLPQALCR 214
IS LPQ L R
Sbjct: 197 ISRLPQLLSR 206
>TAIR|locus:2131839 [details] [associations]
symbol:AT4G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888
EMBL:CP002687 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
HOGENOM:HOG000161320 KO:K14397 PANTHER:PTHR13047 OMA:CLAQWWR
EMBL:BT005519 EMBL:AK118070 EMBL:AK228476 IPI:IPI00539157
RefSeq:NP_194285.2 UniGene:At.44085 ProteinModelPortal:Q8GXS3
SMR:Q8GXS3 IntAct:Q8GXS3 STRING:Q8GXS3 PRIDE:Q8GXS3
EnsemblPlants:AT4G25550.1 GeneID:828660 KEGG:ath:AT4G25550
TAIR:At4g25550 InParanoid:Q8GXS3 PhylomeDB:Q8GXS3
ProtClustDB:CLSN2689678 Genevestigator:Q8GXS3 Uniprot:Q8GXS3
Length = 200
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 102/185 (55%), Positives = 127/185 (68%)
Query: 35 NLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLML 94
N YPLSNY+F K+P EKD+SV R RM+ + K GMR SV+G+LLV EH PH+L+L
Sbjct: 8 NTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILLL 67
Query: 95 QLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDG-VKQEWIVEDTIGNWWRPNFEPP 153
Q+G TF KLPGG L GE+E +GLKR L+ LG + +W V + + WWRPNFE
Sbjct: 68 QIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFETM 127
Query: 154 QYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQGYGPIISSLP 209
YPY P HIT PKE +RL++V L E+ VPKN KL+A PL ELYDN Q YGP+IS++P
Sbjct: 128 MYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIP 187
Query: 210 QALCR 214
Q L R
Sbjct: 188 QQLSR 192
>UNIPROTKB|J9NUR8 [details] [associations]
symbol:J9NUR8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03009929
Ensembl:ENSCAFT00000009953 Uniprot:J9NUR8
Length = 194
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 105/184 (57%), Positives = 130/184 (70%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L NLYPL+NYTF ++ L+EKDSSV ARFQ MR+EF+KIGMR++V+GVL +
Sbjct: 8 TKPLTLEHTLNLYPLTNYTFGTQEALYEKDSSVAARFQHMREEFDKIGMRKTVEGVLRIQ 67
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH QLGT FFKLPG ELN GEDE+EGLKRL+ + G +DG+ Q+W++ED IGN
Sbjct: 68 EH--------QLGTAFFKLPGCELNPGEDEVEGLKRLMMEIRGGQDGILQDWVIEDCIGN 119
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPERV----PKNYKLVAAPLVELYDNSQG 200
NFEPPQYPY+P T PKE ++LFLV L E+V KNY L L+ELYDN+ G
Sbjct: 120 V-ETNFEPPQYPYIPAPCTKPKELKKLFLVHLQEKVWFAVLKNYYLNYMTLLELYDNAPG 178
Query: 201 YGPI 204
YG I
Sbjct: 179 YGLI 182
>DICTYBASE|DDB_G0269370 [details] [associations]
symbol:DDB_G0269370 "cleavage and polyadenylation
specificity factor 5-like protein" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISS] [GO:0005849
"mRNA cleavage factor complex" evidence=IEA;ISS] [GO:0003729 "mRNA
binding" evidence=IEA;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000086 InterPro:IPR015797
InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888 PROSITE:PS00893
PROSITE:PS51462 dictyBase:DDB_G0269370 EMBL:AAFI02000005
GenomeReviews:CM000150_GR Gene3D:3.90.79.10 SUPFAM:SSF55811
GO:GO:0003729 GO:GO:0006378 GO:GO:0017091 GO:GO:0016787
GO:GO:0005849 eggNOG:NOG294795 KO:K14397 OMA:ELNAGED
PANTHER:PTHR13047 RefSeq:XP_645913.1 HSSP:O43809
ProteinModelPortal:Q55E68 STRING:Q55E68 EnsemblProtists:DDB0233564
GeneID:8616854 KEGG:ddi:DDB_G0269370 ProtClustDB:CLSZ2729278
Uniprot:Q55E68
Length = 200
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 80/181 (44%), Positives = 122/181 (67%)
Query: 40 SNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTT 99
++Y+F K+ EK+ S+ ++ R++D +EK G+R++V+G++++H+HG PH+L+LQ
Sbjct: 13 TSYSFG-KEEKKEKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQ-DNN 70
Query: 100 FFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQE--WIVEDTIGNWWRPNFEPPQYPY 157
+FKLPGG+L GE+EI+GL R L+ L + W + D + WWRPNFEP +PY
Sbjct: 71 YFKLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPY 130
Query: 158 VPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQGYGPIISSLPQALC 213
+P HIT PKE ++LF+V LPE+ V N L+A L E+Y+NSQ YG +ISS+P +
Sbjct: 131 IPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALIS 190
Query: 214 R 214
R
Sbjct: 191 R 191
>ASPGD|ASPL0000011699 [details] [associations]
symbol:AN8045 species:162425 "Emericella nidulans"
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR016706 Pfam:PF13869 PIRSF:PIRSF017888
GO:GO:0003729 GO:GO:0006378 EMBL:BN001302 GO:GO:0005849
PANTHER:PTHR13047 OMA:CLAQWWR EnsemblFungi:CADANIAT00004066
Uniprot:C8V609
Length = 275
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 90/188 (47%), Positives = 120/188 (63%)
Query: 36 LYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQ 95
LYPLSNYTF K+ E+D SV AR +R+ + +EK GMRR+ +G+L+ HEH PHVLMLQ
Sbjct: 31 LYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGILVCHEHNHPHVLMLQ 90
Query: 96 LGTTFFKLPGGELNQGEDEIEGLKRLLSDTL---GRR---DGVKQEWIVEDTIGNWWRPN 149
+ FFKLPG L +DEIEG KR L++ L G + +GV ++W + DT+ WWRPN
Sbjct: 91 IANAFFKLPGDYLLHDDDEIEGFKRRLNERLAPVGSQFSGEGVNEDWEIGDTLAQWWRPN 150
Query: 150 FEPPQYPYVPVHITSPKEHRRLFLVQLPERV---PKNYKLVAAPLVELYDNSQGYGPIIS 206
FE ++ + S H L +++ V PKN KL+A PL ELYDN+Q YGP +S
Sbjct: 151 FET----FIKDQM-SLVGHDMLMCLRVAAEVLSVPKNMKLLAVPLFELYDNNQRYGPQLS 205
Query: 207 SLPQALCR 214
S+P L R
Sbjct: 206 SIPHLLSR 213
>TAIR|locus:2123919 [details] [associations]
symbol:CFIM-25 "homolog of CFIM-25" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0010260 "organ
senescence" evidence=RCA] InterPro:IPR015797 InterPro:IPR016706
Pfam:PF13869 PIRSF:PIRSF017888 EMBL:CP002687
GenomeReviews:CT486007_GR Gene3D:3.90.79.10 SUPFAM:SSF55811
GO:GO:0003729 GO:GO:0006378 GO:GO:0016787 GO:GO:0005849
HOGENOM:HOG000161320 KO:K14397 PANTHER:PTHR13047
ProtClustDB:CLSN2689678 EMBL:AY048229 EMBL:AY091704 EMBL:AY085984
IPI:IPI00532079 RefSeq:NP_567835.1 UniGene:At.26190 IntAct:Q94AF0
STRING:Q94AF0 EnsemblPlants:AT4G29820.1 GeneID:829104
KEGG:ath:AT4G29820 TAIR:At4g29820 eggNOG:NOG303614
InParanoid:Q94AF0 OMA:CIGMWWR Genevestigator:Q94AF0 Uniprot:Q94AF0
Length = 222
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 85/185 (45%), Positives = 116/185 (62%)
Query: 35 NLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLML 94
+LYPLS+Y F K+ L KD + R R++ + G+R V+ VLLV PHVL+L
Sbjct: 30 DLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLLL 89
Query: 95 QLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQE-WIVEDTIGNWWRPNFEPP 153
Q + FKLPGG L GE +IEGLKR L+ L + V + V + IG WWRPNFE
Sbjct: 90 QYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFETL 149
Query: 154 QYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQGYGPIISSLP 209
YP++P +I PKE +LFLV+LP VPKN+KL+A PL +L++N + YGPI+S +P
Sbjct: 150 MYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIP 209
Query: 210 QALCR 214
+ L +
Sbjct: 210 KLLSK 214
>UNIPROTKB|H3BV41 [details] [associations]
symbol:NUDT21 "Cleavage and polyadenylation-specificity
factor subunit 5" species:9606 "Homo sapiens" [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
InterPro:IPR016706 Pfam:PF13869 GO:GO:0003729 GO:GO:0006378
GO:GO:0005849 PANTHER:PTHR13047 EMBL:AC092140 HGNC:HGNC:13870
ChiTaRS:NUDT21 Ensembl:ENST00000568822 Bgee:H3BV41 Uniprot:H3BV41
Length = 71
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 64 MRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLS 123
MR+EF+KIGMRR+V+GVL+VHEH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL++
Sbjct: 1 MREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMT 60
Query: 124 DTLGRRDGVKQ 134
+ LGR+DGV Q
Sbjct: 61 EILGRQDGVLQ 71
>UNIPROTKB|J9P0U4 [details] [associations]
symbol:J9P0U4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR016706
Pfam:PF13869 GO:GO:0003729 GO:GO:0006378 GO:GO:0005849
GeneTree:ENSGT00390000015814 PANTHER:PTHR13047 EMBL:AAEX03005389
Ensembl:ENSCAFT00000046484 Uniprot:J9P0U4
Length = 168
Score = 151 (58.2 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 35 NLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEH 86
NLYPLSN TF IK L+ KD+SV RF M +EF+KIG R ++GVL+VHE+
Sbjct: 38 NLYPLSNNTFGIKKFLY-KDNSVATRFHCMNEEFDKIGKSRIIEGVLIVHEY 88
Score = 132 (51.5 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 34/78 (43%), Positives = 45/78 (57%)
Query: 126 LGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER---VPK 182
L R G+ + I + NF P+YP++ IT PKEH+ LFLVQL E V
Sbjct: 94 LPRDTGLSRSLIAALVTNRYQILNF--PRYPWISADITQPKEHK-LFLVQLQEDALFVVS 150
Query: 183 NYKLVAAPLVELYDNSQG 200
NYKLVAAP EL++++ G
Sbjct: 151 NYKLVAAPFFELHNDTTG 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 214 214 0.00085 112 3 11 22 0.39 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 593 (63 KB)
Total size of DFA: 177 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.81u 0.10s 19.91t Elapsed: 00:00:12
Total cpu time: 19.81u 0.10s 19.91t Elapsed: 00:00:12
Start: Thu Aug 15 12:09:25 2013 End: Thu Aug 15 12:09:37 2013