RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16776
(214 letters)
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5,
RNA processing, cleavage factor, diadenosine
tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo
sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A
3q2t_A 2j8q_A 3p5t_A 3p6y_A
Length = 208
Score = 273 bits (700), Expect = 1e-94
Identities = 145/194 (74%), Positives = 169/194 (87%), Gaps = 4/194 (2%)
Query: 25 SKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVH 84
+K L R NLYPL+NYTF K+PL+EKDSSV ARFQRMR+EF+KIGMRR+V+GVL+VH
Sbjct: 9 TKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVH 68
Query: 85 EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGN 144
EH LPHVL+LQLGTTFFKLPGGELN GEDE+EGLKRL+++ LGR+DGV Q+W+++D IGN
Sbjct: 69 EHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGN 128
Query: 145 WWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPER----VPKNYKLVAAPLVELYDNSQG 200
WWRPNFEPPQYPY+P HIT PKEH++LFLVQL E+ VPKNYKLVAAPL ELYDN+ G
Sbjct: 129 WWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPG 188
Query: 201 YGPIISSLPQALCR 214
YGPIISSLPQ L R
Sbjct: 189 YGPIISSLPQLLSR 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.005
Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 64/215 (29%)
Query: 17 VNRTINLISKNLQYNRKKNLYPLSNYTFDIKDPLFEKDSSVPARF-------------QR 63
+ I L+ + ++ + F + +P
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF----DRLSV----FPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 64 MRDEFEKIGM--RRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRL 121
+ ++ K + ++ + + + + L EL + L R
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIP--------SIYL----------ELKVKLENEYALHRS 448
Query: 122 LSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEH------RRLFLVQ 175
+ D + ++ + ++ Y ++ H+ + + R +FL
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYF--------YSHIGHHLKNIEHPERMTLFRMVFL-- 498
Query: 176 LPERVPKNYKLVAAPLVELYDNSQGYGPIISSLPQ 210
+++ + + G I+++L Q
Sbjct: 499 -------DFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Score = 31.7 bits (71), Expect = 0.18
Identities = 34/217 (15%), Positives = 57/217 (26%), Gaps = 77/217 (35%)
Query: 19 RTINLISKNLQYNRKKNLYPLSNYTFDIK-DPLFEKDSSVPARFQRMRDEFEKIGMRRSV 77
+ + + LQ L Y D + S++ R ++ E ++ +
Sbjct: 193 NSPETVLEMLQ-----KLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 78 DGVLLVHEHGLPHV--------LMLQ---LGTTFFK-------------LPGGELNQGED 113
+ LLV L +V L L TT FK + +
Sbjct: 244 ENCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 114 EIEGLKRLLSDTLGRRDG-------------------VKQEWIVEDTIGNWWRPNFEPPQ 154
E LL L R ++ + T NW N +
Sbjct: 300 PDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDK-- 354
Query: 155 YPYVPVHIT--------SPKEHRRLF--LVQLPERVP 181
+ P E+R++F L P
Sbjct: 355 -----LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Score = 29.4 bits (65), Expect = 1.1
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 36/98 (36%)
Query: 113 DEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNF---------EPPQ-------Y- 155
D + G RL TL KQE +V+ + R N+ E Q Y
Sbjct: 59 DAVSGTLRLF-WTLLS----KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 156 -----------PYVPVHITSPKEHRRL--FLVQL-PER 179
+ +++ + + +L L++L P +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 34.2 bits (78), Expect = 0.018
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 76 SVDGVLLVHEHGLPHVLMLQLGTTFFK----LPGGELNQGEDEIEGLKRLLSDTLGRRD 130
+D ++ G +L+L+ L GG + + E + KR+L++ G +
Sbjct: 15 GIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLEN 73
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 33.6 bits (77), Expect = 0.020
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 65 RDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR 120
R+E R + ++ E+ ++++Q + LPGGE+ E + E + R
Sbjct: 9 REETLTYQTRYAAYIIVSKPENNT--MVLVQAPNGAYFLPGGEIEGTETKEEAIHR 62
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 31.8 bits (72), Expect = 0.066
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 72 GMRR--SVDGVLLVHEHGLPHVLMLQ-LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGR 128
GMR+ V + + +L ++ G E E KR + L
Sbjct: 1 GMRQPFQVLVIPFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNL 60
Query: 129 RDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVH------------ITSPKEH 168
V + D+ + +F + VP + +T EH
Sbjct: 61 D--VDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEH 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.094
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 37 YPLSNYTFDIKDPLFEKDSSVPARF-----QRMRDEFEKIGMRRSVDGVLLVHEHGLPHV 91
+ Y F I D + ++ F +R+R+ + + VDG L + +
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK--IFKE 1709
Query: 92 LMLQLGTTFFKLPGGELNQ 110
+ + F+ G L+
Sbjct: 1710 INEHSTSYTFRSEKGLLSA 1728
Score = 26.9 bits (59), Expect = 5.6
Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 33/138 (23%)
Query: 4 SKFYP---PSNST-LVTVNRTIN--LISKNLQYNRKKNLYPLSNY-TFDIKDPLFEKDSS 56
++F P P +S LV + IN L+ N+ +N K P+ Y TFD D L S
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSD-LRVLSGS 474
Query: 57 VPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVL------MLQLGTTFFK-------- 102
+ R I +R V H+L LG +
Sbjct: 475 ISERIVDC------I-IRLPVKWETTTQ-FKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Query: 103 -LPGGELNQGEDEIEGLK 119
+ G L+ D+ G K
Sbjct: 527 VIVAGTLDINPDDDYGFK 544
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 31.9 bits (72), Expect = 0.12
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 47 KDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFK---- 102
K + Q + + + V HVLM++
Sbjct: 173 KSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAG-HVLMVRRQAKPGLGLIA 231
Query: 103 LPGGELNQGEDEIEGLKRLLSDTLG 127
LPGG + Q E +EG+ R L +
Sbjct: 232 LPGGFIKQNETLVEGMLRELKEETR 256
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 31.2 bits (70), Expect = 0.20
Identities = 9/62 (14%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 61 FQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQL--GTTFFKLPGGELNQGEDEIEGL 118
+ D+F + R V G +++ + ++++ ++ + P G++++ E +++
Sbjct: 87 HEEAFDDFLRYKTRIPVRGAIMLDMS-MQQCVLVKGWKASSGWGFPKGKIDKDESDVDCA 145
Query: 119 KR 120
R
Sbjct: 146 IR 147
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 30.8 bits (69), Expect = 0.23
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 76 SVDGVLLVHEHGLPHVLMLQLGTTFFK----LPGGELNQGEDE--IEGLKRLLSDTLGRR 129
+VD VL + VL++Q F LPGG +++ DE + + R L++
Sbjct: 24 TVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVV 83
Query: 130 DGVKQEWIVEDTIGNWWRP 148
++ R
Sbjct: 84 PPYIEQLCTVGNNSRDARG 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.24
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 1 QLNS--KFYPPSNSTLVTVNRTI 21
+L + K Y ++ + + T+
Sbjct: 24 KLQASLKLYADDSAPALAIKATM 46
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 30.0 bits (68), Expect = 0.31
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 103 LPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHI 162
PGG+L GE L R L++ LG V+ F Y + +
Sbjct: 39 FPGGKLEPGETPEAALVRELAEELG----------VDTRASCLAPLAFASHSYDTFHLLM 88
Query: 163 T-----------SPKEHRRLFLVQLPERVPKNYKLVAA--PLVE 193
+ +E + L V+ + Y + A PL+
Sbjct: 89 PLYACRSWRGRATAREGQTLAWVRAER--LREYPMPPADLPLIP 130
>1gqv_A Eosinophil-derived neurotoxin; RNAse-2, RNAse US, ribonuclease;
0.98A {Homo sapiens} SCOP: d.5.1.1 PDB: 1hi2_A 1hi3_A*
1hi4_A* 1hi5_A* 2bex_C 2bzz_A* 2c01_X* 2c02_A* 2c05_A*
1k2a_A
Length = 135
Score = 29.9 bits (67), Expect = 0.33
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 144 NWWRPNFEPPQYPYVPVH 161
+ +PPQYP VPVH
Sbjct: 113 DNRDQRRDPPQYPVVPVH 130
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 30.0 bits (68), Expect = 0.36
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 103 LPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHI 162
PGG++ QGE L R L + LG V N + F Y + +
Sbjct: 60 FPGGKVEQGETPEASLIRELEEELG----------VHVQADNLFPLTFASHGYETFHLLM 109
Query: 163 T-----------SPKEHRRLFLVQLPERVPKNYKLVAA--PLVE 193
+E + L + + + Y + A PLV+
Sbjct: 110 PLYFCSHYKGVAQGREGQNLKWIFIND--LDKYPMPEADKPLVQ 151
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 28.4 bits (64), Expect = 0.87
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 76 SVDGVLL-VHEHGLPHVLMLQLGTTFFK--LPGGELNQGEDEIEGLKRLL 122
+ D ++ +++++ LPGG + GE E R +
Sbjct: 11 ATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREM 60
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 28.7 bits (64), Expect = 0.92
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 79 GVLLVHEHGLPHVLMLQLGTTFFK----LPGGELNQGEDEIEGLKRLLSDTLG 127
++ + G L+ + + +PGG + + E +RL LG
Sbjct: 22 DFIVENSRG--EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG 72
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 29.1 bits (66), Expect = 1.1
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 57 VPARFQRMRDEFEKIGMRRSVDGVLL 82
+ F + + + + +DG+LL
Sbjct: 109 IHGPFSALGEYVAERDLIGKIDGILL 134
>2hky_A Ribonuclease 7; RNAse, antimicrobial activity, hydrolase; NMR {Homo
sapiens}
Length = 129
Score = 28.3 bits (63), Expect = 1.2
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 146 WRPNFEPPQYPYVPVH 161
+ Q+ VPVH
Sbjct: 109 PPQKKDSQQFHLVPVH 124
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 28.3 bits (63), Expect = 1.3
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 63 RMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQ--LGTTFFK----LPGGELNQGEDEIE 116
F+ MR+ L+ G L+ + F L GG + GE E
Sbjct: 15 TENLYFQSNAMRQRTIVCPLIQNDG--CYLLCKMADNRGVFPGQWALSGGGVEPGERIEE 72
Query: 117 GLKRLLSDTLG--RRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVH---------ITSP 165
L+R + + LG W D I + + + + I
Sbjct: 73 ALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIN 132
Query: 166 KEH 168
E
Sbjct: 133 DEF 135
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown
functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A
2gpz_A
Length = 114
Score = 27.1 bits (60), Expect = 2.3
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 122 LSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVH--ITSPKEH 168
+ + ++ V G++++ +P +PV I EH
Sbjct: 48 IKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEH 96
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 27.1 bits (60), Expect = 3.1
Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR 120
D LLV E P G L GE I+ R
Sbjct: 19 DKYLLVEEIPRG-------TAIKLNQPAGHLEPGESIIQACSR 54
>4a2o_A Eosinophil cationic protein; hydrolase, oxidoreductase,
antimicrobial, cytotoxic; HET: SO4; 1.69A {Homo sapiens}
PDB: 2kb5_A 1dyt_A* 4a2y_A* 1h1h_A* 1qmt_A
Length = 133
Score = 26.8 bits (59), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 147 RPNFEPPQYPYVPVH 161
R + P+YP VPVH
Sbjct: 114 RDPRDSPRYPVVPVH 128
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 27.5 bits (62), Expect = 3.6
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 120 RLLSDTL-G------RRDGVKQEWIVEDTIGNWW-RPNFEPPQYPY 157
R++ DT+ G +GV W D I + Y
Sbjct: 417 RMIHDTMNGDGSNFADWNGVSIAWKFVDAISAVYTADKAPLETYKS 462
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 27.3 bits (60), Expect = 3.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 76 SVDGVLL--VHEHGLPHVLMLQLGTTFFK----LPGGELNQGEDEIEGLKRLL 122
+VD VLL E VL++Q F+ LPGG +N+ E + + R
Sbjct: 41 TVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRET 93
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 27.0 bits (60), Expect = 3.6
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 82 LVHEHGLPHVLMLQ---LGTTFFKLPGGELNQGEDEIEGLKR 120
+VH G L+++ G + P G L E +E R
Sbjct: 11 VVHAEG--KFLVVEETINGKALWNQPAGHLEADETLVEAAAR 50
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 27.1 bits (59), Expect = 3.9
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 74 RRSVDGVLLVH----EHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129
+R G ++H +H L V + + + +PGG ++ GE LKR +
Sbjct: 121 KRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNS 180
Query: 130 DGVKQEWIVE 139
E
Sbjct: 181 LQKTSAEKRE 190
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 27.1 bits (60), Expect = 3.9
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 80 VLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLG 127
+LL+ + + +PGG +++ E + +R L +
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 27.2 bits (61), Expect = 4.5
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 120 RLLSDTL-G------RRDGVKQEWIVEDTIGNWW-RPNFEPPQYPY 157
L+ + L G R D + W + + + R + Y
Sbjct: 466 SLIHEALLGNSTNFVRVDELDAAWRIYTPLLHAIDRGEVKVLPYAA 511
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
morifolium} PDB: 2e1u_A 2e1t_A
Length = 454
Score = 27.2 bits (60), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 100 FFKLPGGELNQGEDEIEGLKRLLSDTL 126
F++LP E + +K LS TL
Sbjct: 47 FYELPITRSQFTETVVPNIKHSLSITL 73
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 27.3 bits (60), Expect = 4.7
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 47 KDPLFEKDSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFK---- 102
+++ + + + K + + V + H+LM+Q K
Sbjct: 178 DTQVYQDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVND-HILMVQRKAHPGKDLWA 236
Query: 103 LPGGELNQGEDEIEGLKRLL 122
LPGG L E + + R L
Sbjct: 237 LPGGFLECDETIAQAIIREL 256
>2apq_A Ribonuclease; AN active site mutant of RNAse A (H119A) with AN
amyloidogenic expansion in the C-terminal hinge-loop
region(between residues 112 and 113).; 1.80A {Bos
taurus}
Length = 139
Score = 26.1 bits (57), Expect = 5.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 143 GNWWRPNFEPPQYPYVPVH 161
G + + PYVPV
Sbjct: 116 GQQQQQQQQQQGNPYVPVA 134
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
{Nicotiana tabacum}
Length = 453
Score = 26.8 bits (59), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 100 FFKLPGGELNQGEDEIEGLKRLLSDTL 126
F+KLP + + I LK LS TL
Sbjct: 42 FYKLPISRPDFVQTIIPTLKDSLSLTL 68
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 26.8 bits (59), Expect = 6.2
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 16 TVNRTINLISKNLQYNRKKNLYPLS-NYTFDIK-DPLFEKDSSVPARFQRMRDEFEKIGM 73
T + L N K + F F + ++ +
Sbjct: 144 TYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPE----ETKLGTSAPTLIS 199
Query: 74 RRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTL--GRRDG 131
+ + + GLP L L TF + + + + + + + G
Sbjct: 200 SWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAEKLG 259
Query: 132 VKQEWIVEDTI 142
V ++ V + +
Sbjct: 260 VPKDEAVHNIL 270
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 26.7 bits (60), Expect = 6.3
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 120 RLLSDTL-G------RRDGVKQEWIVEDTIGNWW-RPNFEPPQYPY 157
RL+ D G R D +++ W + + + +P Y Y
Sbjct: 413 RLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIY 458
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural
genomics, PSI-2, protein structure initiative; NMR
{Shigella flexneri}
Length = 108
Score = 25.4 bits (55), Expect = 9.2
Identities = 5/57 (8%), Positives = 13/57 (22%)
Query: 115 IEGLKRLLSDTLGRRDGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRL 171
+E S + +T+ W R + + + +
Sbjct: 20 LESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGDDGGLTTAERQRLKEP 76
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 25.8 bits (57), Expect = 9.4
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 79 GVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR 120
L+V H +L+ + + GG + E + + R
Sbjct: 23 TALIVQNH---KLLVTK-DKGKYYTIGGAIQVNESTEDAVVR 60
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 25.8 bits (56), Expect = 9.9
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 79 GVLLVHEHGLPHVLMLQ-LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
V++ LM+ + GG + +D+++ + L
Sbjct: 49 SAFAVNKER-NKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELK-EETGVKNPTPLLD 106
Query: 138 VEDTIGNWWRPNFEPPQYPYVPVH 161
+ + YV H
Sbjct: 107 KAFALDVLTVNGH-IKRGKYVSSH 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.423
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,343,087
Number of extensions: 198923
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 50
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)