RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16776
(214 letters)
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 32.3 bits (73), Expect = 0.013
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 73 MRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGV 132
M G ++ + VL+L+ F+ P G GE E R + + G R
Sbjct: 1 MELGA-GGVVFNAKR--EVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRA-- 55
Query: 133 KQEWIVEDTIGNWWRPNFEPPQYPYVPVHIT 163
E ++ + P + + +
Sbjct: 56 --EVLLPLYPTRYVNPKGVEREVHWFLMRGE 84
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 32.1 bits (72), Expect = 0.025
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 8/96 (8%)
Query: 91 VLMLQ--LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR------DGVKQEWIVEDTI 142
L+LQ G + P G + GED++E R + G + +
Sbjct: 31 FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVAR 90
Query: 143 GNWWRPNFEPPQYPYVPVHITSPKEHRRLFLVQLPE 178
+ + V I EH+ + L E
Sbjct: 91 NKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEE 126
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 31.3 bits (70), Expect = 0.062
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 76 SVDGVLLV--HEHGLPHVLMLQLGTTFFK----LPGGELNQGEDEIEGLKRLLSDTLGRR 129
+VD VLL E VL++Q F+ LPGG +N+ E + + R + G
Sbjct: 39 TVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVV 98
Query: 130 --DGVKQEWIVEDTIGNWWR 147
++ R
Sbjct: 99 ISQENIEQLHSFSRPDRDPR 118
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 29.4 bits (65), Expect = 0.16
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 65 RDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKR 120
R+E R + ++ E+ ++++Q + LPGGE+ E + E + R
Sbjct: 8 REETLTYQTRYAAYIIVSKPENNT--MVLVQAPNGAYFLPGGEIEGTETKEEAIHR 61
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 29.4 bits (65), Expect = 0.22
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 72 GMRRSVDGVLLVHEHGLPHVLMLQ--LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRR 129
G RR+V G+ L++ + +++P G +++GED R L
Sbjct: 12 GYRRNV-GICLMNNDK--KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIREL-REETGV 67
Query: 130 DGVKQEWIVEDTIGNWWRPNFEPPQYPYVPVHITSPKEHRRLF 172
+ V + + P + LF
Sbjct: 68 TSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLF 110
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 28.6 bits (63), Expect = 0.33
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 66 DEFEKIGMRRSVDGVLLVHEHGLPHVLMLQ--------LGTTFFKLPGGELNQGEDEIEG 117
DE + + GV+L++E G +L++Q + +P G + GE+ +
Sbjct: 3 DERTHVPVELRAAGVVLLNERG--DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDA 60
Query: 118 LKRLLSDTLG 127
R + G
Sbjct: 61 AVREACEETG 70
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 28.5 bits (63), Expect = 0.50
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 73 MRRSVDGVLLVHE---HGLPHVLMLQL-GTTFFKLPGGELNQGEDEIEGLKRLLSDTLG 127
+R G ++H + + ++ + +PGG ++ GE LKR +
Sbjct: 120 WKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEAL 178
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 27.9 bits (61), Expect = 0.63
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 76 SVDGVLLVHEHGLPHVLMLQLGTTFFK----LPGGELNQGEDEIEGLKRLLSDTLGRRDG 131
+D ++ G +L+L+ L GG + + E + KR+L++ G +
Sbjct: 12 GIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENV 71
Query: 132 VKQEWIVEDTIGNWWRPNFEPPQY 155
++ I Y
Sbjct: 72 YMEQVGAFGAIDRDPGERVVSIAY 95
>d1gqva_ d.5.1.1 (A:) Eosinophil-derived neurotoxin (EDN) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 27.6 bits (61), Expect = 0.63
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 147 RPNFEPPQYPYVPVH 161
+PPQYP VPVH
Sbjct: 116 DQRRDPPQYPVVPVH 130
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 27.7 bits (61), Expect = 0.69
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
VLL + + GG++ +GE +G +R L + G+ + +
Sbjct: 16 QRVLLGMKKRGFG-------AGRWNGFGGKVQEGETIEDGARRELQEES----GLTVDAL 64
Query: 138 VEDTIGNWWRPNFEPPQYPYVPVH 161
+ + +V
Sbjct: 65 HKVGQIVFEFVGEPELMDVHVFCT 88
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase
{Trypanosoma brucei [TaxId: 5691]}
Length = 152
Score = 27.3 bits (60), Expect = 0.86
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 61 FQRMRDEFEKIGMRRSVDGVLLVHEHGLPHVLMLQLGTTFF 101
R+ EK G D L V GLP LML G F
Sbjct: 97 TSDRRNMREKYGSGVDKDN-LRVEGFGLPFNLMLYDGVEVF 136
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 27.0 bits (59), Expect = 1.2
Identities = 8/56 (14%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 74 RRSVDGVLLVHEHGLPHVLMLQ--LGTTFFKLPGGELNQGEDEIEGLKRLLSDTLG 127
R V G +++ ++++ ++ + P G++++ E +++ R + + G
Sbjct: 1 RIPVRGAIMLDMSM-QQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETG 55
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 26.6 bits (58), Expect = 1.2
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 8/73 (10%)
Query: 78 DGVLLVHEHGLPHVLMLQLGTTFFKLPGGELNQGEDEIEGLKRLLSDTLGRRDGVKQEWI 137
D +LL + + G + GE + + R + + G + +
Sbjct: 14 DSILLAQHTRHRN--------GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVT 65
Query: 138 VEDTIGNWWRPNF 150
+
Sbjct: 66 SQPWPFPQSLMTA 78
>d1qkia2 d.81.1.5 (A:200-434,A:450-511) Glucose 6-phosphate
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 297
Score = 27.3 bits (60), Expect = 1.5
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 128 RRDGVKQEW-IVEDTIGNWWRPNFEPPQYPY 157
R D + + W I + +P Y Y
Sbjct: 240 RSDELLEAWRIFTPLLHQIELEKPKPIPYIY 270
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 26.6 bits (58), Expect = 1.8
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 54 DSSVPARFQRMRDEFEKIGMRRSVDGVLLVHEHGL--------PHVLMLQLGTTFFKLPG 105
D P R + + G + + +L +LM+ PG
Sbjct: 1 DKPRPRNISR-EESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPG 59
Query: 106 GELNQGEDEIE-GLKRLLSDTLG 127
G ++ + +E GLKR L + LG
Sbjct: 60 GFVDTRDISLEEGLKRELEEELG 82
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate
dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Length = 290
Score = 26.9 bits (59), Expect = 1.8
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 128 RRDGVKQEW-IVEDTIGNWWRPNFEPPQYPY 157
+GV W V+ + Y
Sbjct: 237 DWNGVSIAWKFVDAISAVYTADKAPLETYKS 267
>d1dyta_ d.5.1.1 (A:) Eosinophil cationic protein (ECP),
ribonuclease 3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 26.1 bits (57), Expect = 2.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 147 RPNFEPPQYPYVPVH 161
R + P+YP VPVH
Sbjct: 114 RDPRDSPRYPVVPVH 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.423
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 829,047
Number of extensions: 39319
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 20
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)