BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16778
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KNQ|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO1|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO1|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO5|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO5|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KO8|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO8|B Chain B, Crystal Structure Of Gluconate Kinase
pdb|1KOF|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KOF|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
++V+MGVSGSGKS + +A +L F+DGD LHP+ NI+KM++ +PLND+DR+PWL +
Sbjct: 10 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69
Query: 100 NRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFM 158
N + N ++VCSAL + FIYLK +F VI SRL+ R HF
Sbjct: 70 NDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129
Query: 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
+L +QF+TL+EP E DV V +++PLEG+V+ +
Sbjct: 130 KTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167
>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase
pdb|1KO4|B Chain B, Crystal Structure Of Gluconate Kinase
Length = 175
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
++V+ GVSGSGKS + +A +L F+DGD LHP+ NI+K ++ +PLND+DR+PWL +
Sbjct: 10 IYVLXGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKXASGEPLNDDDRKPWLQAL 69
Query: 100 NRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFM 158
N N ++VCSAL + FIYLK +F VI SRL+ R HF
Sbjct: 70 NDAAFAXQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129
Query: 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
L +QF+TL+EP E DV V +++PLEG+V+ +
Sbjct: 130 KTQXLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
+C++D+EQ A VL ++ PR++R++++ L T
Sbjct: 27 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 86
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
LG V +PI V AMQ++AH +GE+ A +G AE P+
Sbjct: 87 SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 146
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
+W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN+F +P L ++
Sbjct: 147 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 206
Query: 364 ELAEKT 369
T
Sbjct: 207 NFETST 212
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
+IEE+AE P+ +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN
Sbjct: 136 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 195
Query: 421 KFNMPSHLK 429
+F +P L+
Sbjct: 196 RFKLPPQLR 204
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
+C++D+EQ A VL ++ PR++R++++ L T
Sbjct: 5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 64
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
LG V +PI V AMQ++AH +GE+ A +G AE P+
Sbjct: 65 SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 124
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
+W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN+F +P L ++
Sbjct: 125 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 184
Query: 364 ELAEKT 369
T
Sbjct: 185 NFETST 190
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
+IEE+AE P+ +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN
Sbjct: 114 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 173
Query: 421 KFNMPSHLK 429
+F +P L+
Sbjct: 174 RFKLPPQLR 182
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
+C++D+EQ A VL ++ PR++R++++ L T
Sbjct: 22 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 81
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
LG V +PI V AMQ++AH +GE+ A +G AE P+
Sbjct: 82 SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 141
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
+W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN+F +P L ++
Sbjct: 142 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 201
Query: 364 ELAEKT 369
T
Sbjct: 202 NFETST 207
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
+IEE+AE P+ +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN
Sbjct: 131 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 190
Query: 421 KFNMPSHLK 429
+F +P L+
Sbjct: 191 RFKLPPQLR 199
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A + RPR++ D++ + T LG + +PI ++P AMQK+AH EGE A A G
Sbjct: 41 AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 100
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT
Sbjct: 101 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
G R ADI+N+F +P L ++
Sbjct: 160 RLGRREADIKNRFVLPPFLTLKNF 183
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
++EE+A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT G R ADI+N
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170
Query: 421 KFNMPSHL 428
+F +P L
Sbjct: 171 RFVLPPFL 178
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A + RPR++ D++ + T LG + +PI ++P AMQK+AH EGE A A G
Sbjct: 42 AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 101
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT
Sbjct: 102 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
G R ADI+N+F +P L ++
Sbjct: 161 RLGRREADIKNRFVLPPFLTLKNF 184
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
++EE+A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT G R ADI+N
Sbjct: 113 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 171
Query: 421 KFNMPSHL 428
+F +P L
Sbjct: 172 RFVLPPFL 179
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A + RPR++ D++ + T LG + +PI ++P AMQK+AH EGE A A G
Sbjct: 41 AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 100
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT
Sbjct: 101 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
G R ADI+N+F +P L ++
Sbjct: 160 RLGRREADIKNRFVLPPFLTLKNF 183
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
++EE+A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT G R ADI+N
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170
Query: 421 KFNMPSHL 428
+F +P L
Sbjct: 171 RFVLPPFL 178
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 77/144 (53%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A K +R+RPR +RD+SK T G + PI +SP A +A +GE A A E
Sbjct: 40 AFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN 99
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
Y P+ +WFQLY+ D + K +VQRAE G+KALV+T+DT
Sbjct: 100 ICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
V G R D RN+ N+ +++ +++L
Sbjct: 160 VLGNRRRDKRNQLNLEANILLKDL 183
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
++E++ P+ +WFQLY+ D + K +VQRAE G+KALV+T+DT V G R D RN
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 421 KFNMPSHL 428
+ N+ +++
Sbjct: 171 QLNLEANI 178
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A K +R+RPR +RD+SK T G + PI +SP A +A +GE A A E
Sbjct: 40 AFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN 99
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
Y P+ +WFQLY+ D + K +VQRAE G+KALV+T+DT
Sbjct: 100 ICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTP 159
Query: 342 VFGTRYADIRNKFNMPSHL---NIEELAEKTP 370
V G R D RN+ N+ +++ + L E+ P
Sbjct: 160 VLGNRRRDKRNQLNLEANILKAALRALKEEKP 191
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
++E++ P+ +WFQLY+ D + K +VQRAE G+KALV+T+DT V G R D RN
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 421 KFNMPSHL 428
+ N+ +++
Sbjct: 171 QLNLEANI 178
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
G P+ V+MGVSGSGK+TI +A G++F + D H NI M PL DEDR P
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85
Query: 95 WLNNINRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXXXVV-FIYLKAEFGVILSRLQKR 153
WL ++ + ++ ++ CSAL V F++L VI R+ KR
Sbjct: 86 WLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKR 145
Query: 154 AEHFMPADLLESQFQTLE--EPD 174
HFMPA LL+SQ TLE EPD
Sbjct: 146 EGHFMPASLLQSQLATLEALEPD 168
>pdb|3T61|A Chain A, Crystal Structure Of A Gluconokinase From Sinorhizobium
Meliloti 1021
pdb|3T61|B Chain B, Crystal Structure Of A Gluconokinase From Sinorhizobium
Meliloti 1021
Length = 202
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 56 ESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN-RIIHQLNVDNLTGV 114
E++A G FI+GD LHP NI K S PL D+DR PWL I R+ + V V
Sbjct: 36 EAIAEACGYPFIEGDALHPPENIRKXSEGIPLTDDDRWPWLAAIGERLASREPV-----V 90
Query: 115 LVCSALXXXXXXXXXXXX--XVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE 172
+ CSAL + F++L V+ R R HF P+ LL++Q +TLE+
Sbjct: 91 VSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERXHHRTGHFXPSSLLQTQLETLED 150
Query: 173 PDPLVEPDVRTVSVN--EPLEGIVSKS 197
P +VRTV+V+ +PL IV ++
Sbjct: 151 P----RGEVRTVAVDVAQPLAEIVREA 173
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A K + PR+ +D+ T+ LGH ++ P ++P A LAH E G A AV E G
Sbjct: 57 AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 116
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I +E +WFQ+Y+ +D + + ++ A+ G A++LT D+
Sbjct: 117 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 176
Query: 342 VFGTRYADIRNKFNMP 357
V G R D++NKF P
Sbjct: 177 VSGNRDRDVKNKFVYP 192
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
S EE++E +WFQ+Y+ +D + + ++ A+ G A++LT D+ V G R D
Sbjct: 125 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 184
Query: 418 IRNKFNMP 425
++NKF P
Sbjct: 185 VKNKFVYP 192
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A K + PR+ +D+ T+ LGH ++ P ++P A LAH E G A AV E G
Sbjct: 57 AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 116
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I +E +WFQ+Y+ +D + + ++ A+ G A++LT D+
Sbjct: 117 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 176
Query: 342 VFGTRYADIRNKFNMP 357
V G R D++NKF P
Sbjct: 177 VSGNRDRDVKNKFVYP 192
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
S EE++E +WFQ+Y+ +D + + ++ A+ G A++LT D+ V G R D
Sbjct: 125 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 184
Query: 418 IRNKFNMP 425
++NKF P
Sbjct: 185 VKNKFVYP 192
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
A K + PR+ +D+ T+ LGH ++ P ++P A LAH E G A AV E G
Sbjct: 51 AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 110
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
I +E +WFQ+Y+ +D + + ++ A+ G A++LT D+
Sbjct: 111 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170
Query: 342 VFGTRYADIRNKFNMP 357
V G R D++NKF P
Sbjct: 171 VSGNRDRDVKNKFVYP 186
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
S EE++E +WFQ+Y+ +D + + ++ A+ G A++LT D+ V G R D
Sbjct: 119 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 178
Query: 418 IRNKFNMP 425
++NKF P
Sbjct: 179 VKNKFVYP 186
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 227 ISTAASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 287 GQREKDMKLKFS 298
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
KF+
Sbjct: 296 KFS 298
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTP 302
T LG + +PI ++P AMQK+AH EGE A A G I A P
Sbjct: 2 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 61
Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV 342
++FQLY+Y+DR + LV+RAE+AG+KA+ LTV +V
Sbjct: 62 GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVWKDV 100
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV 410
++EE+A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTV +V
Sbjct: 52 SVEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVWKDV 100
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 287 GQREKDMKLKFS 298
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
KF+
Sbjct: 296 KFS 298
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 287 GQREKDMKLKFS 298
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
KF+
Sbjct: 296 KFS 298
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 287 GQREKDMKLKFS 298
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
KF+
Sbjct: 296 KFS 298
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 162 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 221
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 222 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 281
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 282 GQREKDMKLKFS 293
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 231 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 290
Query: 421 KFN 423
KF+
Sbjct: 291 KFS 293
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 68 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 127
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 128 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 187
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 188 GQREKDMKLKFS 199
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 137 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 196
Query: 421 KFN 423
KF+
Sbjct: 197 KFS 199
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS + KL + EGE G V +V +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 227 ISTAASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
G R D++ KF+
Sbjct: 287 GQREKDMKLKFS 298
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
KF+
Sbjct: 296 KFS 298
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
+P+++ D+ K + TD LG V +P VS A+ KL + EGE G V +V +
Sbjct: 66 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 125
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
A + + +W+QLY+ DR+IT LV+ EK G KAL +TVD
Sbjct: 126 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 185
Query: 344 GTRYADIRNKFN 355
G + D++ KF+
Sbjct: 186 GQKEKDMKLKFS 197
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
EE+ E P + +W+QLY+ DR+IT LV+ EK G KAL +TVD G + D++
Sbjct: 135 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKL 194
Query: 421 KFN 423
KF+
Sbjct: 195 KFS 197
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 216 DDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAA 275
D F+Q+ R +P+ + D+S+R+L + LG +P+ + P A+ +G++ A
Sbjct: 42 DVFQQW-----RFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALAR 96
Query: 276 AVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALV 335
A + G + A + WFQLY+ REI + +V +A GY LV
Sbjct: 97 AATKAGIPFVLSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLV 154
Query: 336 LTVDTNVFGTRYADIRNKFNMPSHLNIE 363
LT D V G R D+ N+F +P L ++
Sbjct: 155 LTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 354 FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413
+ S+++IE+LA + WFQLY+ REI + +V +A GY LVLT D V G
Sbjct: 107 LSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGY 164
Query: 414 RYADIRNKFNMPSHL 428
R D+ N+F +P L
Sbjct: 165 RERDLHNRFKIPPFL 179
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 216 DDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAA 275
D F+Q+ R +P+ + D+S+R+L + LG +P+ + P + +G++ A
Sbjct: 42 DVFQQW-----RFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALAR 96
Query: 276 AVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALV 335
A + G + A + WFQLY+ REI + +V +A GY LV
Sbjct: 97 AATKAGIPFVLSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLV 154
Query: 336 LTVDTNVFGTRYADIRNKFNMPSHLNIE 363
LT D V G R D+ N+F +P L ++
Sbjct: 155 LTTDVAVNGYRERDLHNRFKIPPFLTLK 182
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 354 FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413
+ S+++IE+LA + WFQLY+ REI + +V +A GY LVLT D V G
Sbjct: 107 LSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGY 164
Query: 414 RYADIRNKFNMPSHL 428
R D+ N+F +P L
Sbjct: 165 RERDLHNRFKIPPFL 179
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
V +G GSGKST+ +LA L + F+D D L Q K + K E +R N R
Sbjct: 8 VFIGFXGSGKSTLARALAKDLDLVFLDSDFLIEQ----KFNQKVSEIFEQKRE---NFFR 60
Query: 102 IIHQLNVDNLTGV-LVCSALXXXXXXXXXXXXXVVFIYLKAEFGVILSRLQK 152
Q D + C A IYLKA+F + RL K
Sbjct: 61 EQEQKXADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDK 112
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGD 70
V++G+ GSGKSTIG LA LGV +D D
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD 34
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Adp At
2.15 Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Amppcp
At 2.85 Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate At 1.75
Angstrom Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGD 70
V++G+ GSGKSTIG LA LGV +D D
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTD 34
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 24 IMTTTLSPSGEGS--PSTVFVI--MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID 79
I+ L P E PS ++V+ G+SGSGKS++ + L LG ID DHL ++
Sbjct: 57 ILGNLLQPPNERPELPSGLYVLGLTGISGSGKSSVAQRLKN-LGAYIIDSDHLGHRAYAP 115
Query: 80 KMSAKQPL 87
A QP+
Sbjct: 116 GGPAYQPV 123
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 35 GSPSTVFV----IMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQ--PL 87
GSP + + + G G GK+T+G+ LA++ G+K+I+ GD + D + P+
Sbjct: 4 GSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPI 63
Query: 88 NDEDR 92
DEDR
Sbjct: 64 LDEDR 68
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 41 FVIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQ--PLNDEDR 92
++ G G GK+T+G+ LA++ G+K+I+ GD + D + P+ DEDR
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 61
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 43 IMGVSGSGKSTIGESLATRLGVKFIDGD 70
++G G GK+T+G LA LG +F+D D
Sbjct: 7 MVGARGCGKTTVGRELARALGYEFVDTD 34
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 43 IMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK------QPLNDEDRRPWL 96
++G+ GSGK+T+G+ +A LG F D D L Q+ A+ + + E L
Sbjct: 53 LVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEAL 112
Query: 97 NNINRIIHQLNVDNLTGVLV 116
++ + HQ+ V G ++
Sbjct: 113 KKLSLMYHQVVVSTGGGAVI 132
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
V VI G +G GKS + LA + + I+ D + +I ++ K PL + + P
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIP 58
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 43 IMGVSGSGKSTIGESLATRLGVKFIDGDH 71
++G G+GKSTIG LA +L ++F D D
Sbjct: 9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68
G S V + G SG+GKS++ + LA +LG ++D
Sbjct: 1 GPGSMVVAVDGPSGTGKSSVAKELARQLGASYLD 34
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 43 IMGVSGSGKSTIGESLATRLGVKFIDGD 70
+ G G+GK+T+G++ A +L V FID D
Sbjct: 30 LTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGD----HLHPQSNID 79
+P E TVF G+SG+GKST+ +LA RL V +DGD HL +
Sbjct: 362 TPPRERQGFTVF-FTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFS 420
Query: 80 K 80
K
Sbjct: 421 K 421
>pdb|3R20|A Chain A, Crystal Structure Of Cytidylate Kinase From
Mycobacterium Smegmatis
Length = 233
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND 89
S S V + G +G+GKS++ LA LG +++D ++ + + + A L D
Sbjct: 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTD 60
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia
Chrysanthemi
Length = 173
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 43 IMGVSGSGKSTIGESLATRLGVKFIDGD 70
++G G G +T+G LA LG +F+D D
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVDTD 34
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATR 61
P V IMG +GSGKST+ +LA R
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGR 50
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATR 61
P V IMG +GSGKST+ +LA R
Sbjct: 45 PGEVHAIMGPNGSGKSTLSATLAGR 69
>pdb|3HDT|A Chain A, Crystal Structure Of Putative Kinase From Clostridium
Symbiosum Atcc 14940
pdb|3HDT|B Chain B, Crystal Structure Of Putative Kinase From Clostridium
Symbiosum Atcc 14940
Length = 223
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS 76
G+ + + I GSG +G+ LA LG+ F D D L S
Sbjct: 11 GNKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLAS 52
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 313 YRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
Y ++ SL ++AEK GY+ +LT D +++
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTADKDLY 146
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 381 YRDREITKSLVQRAEKAGYKALVLTVDTNVF 411
Y ++ SL ++AEK GY+ +LT D +++
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTADKDLY 146
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 313 YRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
Y ++ SL ++AEK GY+ +LT D +++
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTADKDLY 146
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 381 YRDREITKSLVQRAEKAGYKALVLTVDTNVF 411
Y ++ SL ++AEK GY+ +LT D +++
Sbjct: 116 YEADDVLASLAKKAEKEGYEVRILTADKDLY 146
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL 62
GE S S + V+MG +G+GK+T+ + LA L
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
VI+G GSGK T+ + +A G++ + H
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 39
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
VI+G GSGK T+ + +A G++ + H
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With
Atp
Length = 339
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND 89
+ V+MG +G+GKS + LA ++ I+ D + +D + K + D
Sbjct: 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPD 91
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 41 FVIMGVSGSGKSTIGESLATRLGVKFI 67
V+MG+ G+GK T+GE + G+ I
Sbjct: 3 LVLMGLPGAGKGTLGERIVEDYGIPHI 29
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,820,645
Number of Sequences: 62578
Number of extensions: 452669
Number of successful extensions: 1368
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 89
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)