Query psy16778
Match_columns 433
No_of_seqs 341 out of 4506
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 21:48:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538|consensus 100.0 1.1E-48 2.3E-53 356.5 12.0 224 189-417 3-259 (363)
2 PLN02493 probable peroxisomal 100.0 5.5E-44 1.2E-48 346.5 14.3 216 188-405 4-252 (367)
3 cd04736 MDH_FMN Mandelate dehy 100.0 4.7E-43 1E-47 339.8 14.2 211 192-405 2-264 (361)
4 PLN02535 glycolate oxidase 100.0 9.6E-43 2.1E-47 338.5 15.1 216 188-405 6-251 (364)
5 TIGR02708 L_lactate_ox L-lacta 100.0 1E-42 2.2E-47 338.1 14.0 219 188-407 14-258 (367)
6 PRK11197 lldD L-lactate dehydr 100.0 2.5E-42 5.4E-47 337.0 15.0 215 188-405 4-273 (381)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 6.7E-42 1.4E-46 334.7 14.7 217 187-405 18-281 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 4.9E-41 1.1E-45 326.4 13.4 217 188-405 6-249 (351)
9 PLN02979 glycolate oxidase 100.0 1.2E-39 2.6E-44 313.1 14.1 179 226-405 44-251 (366)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.8E-38 4E-43 308.7 14.5 213 192-405 2-241 (344)
11 PF01070 FMN_dh: FMN-dependent 100.0 4.4E-36 9.6E-41 294.0 7.3 199 206-405 9-253 (356)
12 COG3265 GntK Gluconate kinase 99.9 2.7E-25 5.8E-30 184.7 15.2 158 44-203 1-159 (161)
13 COG1304 idi Isopentenyl diphos 99.9 6.6E-26 1.4E-30 220.5 7.4 204 196-406 7-247 (360)
14 KOG3354|consensus 99.9 1.5E-23 3.2E-28 174.8 16.7 164 37-201 11-186 (191)
15 cd02809 alpha_hydroxyacid_oxid 99.9 9.3E-22 2E-26 190.2 15.1 195 192-405 2-200 (299)
16 KOG0538|consensus 99.9 3.5E-22 7.6E-27 183.2 5.3 142 290-431 3-180 (363)
17 COG0703 AroK Shikimate kinase 99.9 2.3E-21 5E-26 168.3 9.7 159 38-203 2-168 (172)
18 PLN02493 probable peroxisomal 99.8 3.7E-20 7.9E-25 180.3 7.4 139 290-429 5-179 (367)
19 cd04736 MDH_FMN Mandelate dehy 99.8 5.9E-20 1.3E-24 178.8 7.7 135 293-429 2-172 (361)
20 TIGR01313 therm_gnt_kin carboh 99.8 4.8E-18 1E-22 150.0 17.1 160 41-201 1-161 (163)
21 PRK11197 lldD L-lactate dehydr 99.8 1.1E-19 2.4E-24 178.1 6.4 136 290-426 5-176 (381)
22 PRK09825 idnK D-gluconate kina 99.8 7.7E-18 1.7E-22 150.2 17.5 166 37-203 2-168 (176)
23 TIGR02708 L_lactate_ox L-lacta 99.8 2E-19 4.3E-24 175.5 7.6 141 288-428 13-189 (367)
24 PLN02535 glycolate oxidase 99.8 1.5E-19 3.2E-24 176.4 6.1 137 288-425 5-177 (364)
25 cd03332 LMO_FMN L-Lactate 2-mo 99.8 5.5E-19 1.2E-23 173.5 8.2 137 288-425 18-190 (383)
26 PRK11545 gntK gluconate kinase 99.8 2.6E-17 5.6E-22 145.1 16.4 158 44-202 1-159 (163)
27 cd04737 LOX_like_FMN L-Lactate 99.8 1.1E-18 2.5E-23 170.0 7.1 141 288-428 5-181 (351)
28 PRK13948 shikimate kinase; Pro 99.7 9.7E-18 2.1E-22 149.7 12.3 159 36-203 8-175 (182)
29 PLN02979 glycolate oxidase 99.7 2.6E-18 5.6E-23 165.9 8.1 99 309-429 80-178 (366)
30 PRK05057 aroK shikimate kinase 99.7 5.4E-17 1.2E-21 144.4 13.5 159 36-201 2-169 (172)
31 PRK13949 shikimate kinase; Pro 99.7 1.4E-16 2.9E-21 141.3 12.0 155 39-201 2-169 (169)
32 PRK13946 shikimate kinase; Pro 99.7 1.2E-16 2.7E-21 143.8 10.7 155 37-203 9-176 (184)
33 COG0529 CysC Adenylylsulfate k 99.7 2.8E-16 6.1E-21 135.0 11.3 158 34-203 19-191 (197)
34 PLN02199 shikimate kinase 99.7 2.5E-16 5.4E-21 148.3 11.4 159 37-203 101-288 (303)
35 cd02021 GntK Gluconate kinase 99.7 2.4E-15 5.3E-20 130.7 16.6 145 40-185 1-149 (150)
36 PRK00625 shikimate kinase; Pro 99.7 3.2E-16 6.9E-21 139.0 11.1 156 39-200 1-170 (173)
37 cd02922 FCB2_FMN Flavocytochro 99.7 1.3E-16 2.8E-21 155.8 8.8 137 293-429 2-175 (344)
38 PRK14021 bifunctional shikimat 99.7 3.7E-16 7.9E-21 162.5 11.2 160 36-202 4-175 (542)
39 PRK00131 aroK shikimate kinase 99.6 8.6E-16 1.9E-20 136.7 9.9 157 35-202 1-170 (175)
40 PRK13947 shikimate kinase; Pro 99.6 4.3E-15 9.3E-20 132.1 13.6 149 40-199 3-163 (171)
41 cd00227 CPT Chloramphenicol (C 99.6 1.8E-14 3.9E-19 128.6 16.5 160 37-202 1-175 (175)
42 PRK03731 aroL shikimate kinase 99.6 4.1E-15 9E-20 132.2 11.8 153 39-202 3-169 (171)
43 PRK06762 hypothetical protein; 99.6 9.3E-15 2E-19 129.3 13.6 154 37-202 1-163 (166)
44 PF01202 SKI: Shikimate kinase 99.6 7.3E-16 1.6E-20 135.3 3.8 148 47-201 1-157 (158)
45 PF01583 APS_kinase: Adenylyls 99.6 6.8E-15 1.5E-19 127.0 9.4 109 37-150 1-117 (156)
46 COG1102 Cmk Cytidylate kinase 99.5 4.4E-14 9.4E-19 119.8 10.1 156 39-203 1-172 (179)
47 PRK05541 adenylylsulfate kinas 99.5 4.2E-14 9.2E-19 126.4 10.6 161 35-203 4-172 (176)
48 PRK00889 adenylylsulfate kinas 99.5 1.3E-13 2.7E-18 123.2 13.6 160 36-203 2-170 (175)
49 PRK08154 anaerobic benzoate ca 99.5 1.8E-14 3.8E-19 140.1 8.6 161 31-202 126-300 (309)
50 cd00464 SK Shikimate kinase (S 99.5 3.3E-14 7.2E-19 123.9 9.2 145 40-191 1-153 (154)
51 TIGR00455 apsK adenylylsulfate 99.5 2.9E-13 6.3E-18 121.8 15.3 160 34-201 14-184 (184)
52 PHA02530 pseT polynucleotide k 99.5 1.1E-13 2.3E-18 134.5 13.1 156 38-193 2-172 (300)
53 PRK03846 adenylylsulfate kinas 99.5 2.1E-13 4.5E-18 124.3 13.9 159 35-203 21-192 (198)
54 PRK14531 adenylate kinase; Pro 99.5 7.5E-14 1.6E-18 125.6 10.4 158 38-201 2-182 (183)
55 PRK14530 adenylate kinase; Pro 99.5 4E-13 8.6E-18 124.1 14.5 166 37-203 2-213 (215)
56 PRK03839 putative kinase; Prov 99.5 1.9E-13 4.2E-18 122.5 11.5 152 39-206 1-156 (180)
57 PLN02200 adenylate kinase fami 99.5 2.1E-13 4.5E-18 127.1 11.0 166 32-203 37-224 (234)
58 PRK13951 bifunctional shikimat 99.5 2.4E-13 5.2E-18 139.3 12.5 145 39-197 1-155 (488)
59 PRK10078 ribose 1,5-bisphospho 99.5 8.6E-13 1.9E-17 119.0 14.2 156 37-203 1-176 (186)
60 PF01070 FMN_dh: FMN-dependent 99.5 5E-14 1.1E-18 138.6 6.2 96 312-429 72-167 (356)
61 TIGR01359 UMP_CMP_kin_fam UMP- 99.5 3.3E-13 7.1E-18 121.3 10.6 162 40-201 1-182 (183)
62 PF13671 AAA_33: AAA domain; P 99.5 1.4E-13 3.1E-18 118.3 7.8 133 40-173 1-143 (143)
63 PRK14532 adenylate kinase; Pro 99.5 7.1E-13 1.5E-17 119.7 12.6 158 39-201 1-185 (188)
64 PRK05537 bifunctional sulfate 99.5 6.1E-13 1.3E-17 138.6 13.4 183 13-203 365-562 (568)
65 PF07931 CPT: Chloramphenicol 99.4 1.1E-12 2.4E-17 115.8 12.5 158 38-201 1-173 (174)
66 PRK13477 bifunctional pantoate 99.4 5E-13 1.1E-17 136.4 10.1 172 30-207 277-507 (512)
67 PRK02496 adk adenylate kinase; 99.4 7E-13 1.5E-17 119.3 10.0 162 39-201 2-182 (184)
68 PRK14527 adenylate kinase; Pro 99.4 8.3E-13 1.8E-17 119.6 10.2 166 35-201 3-190 (191)
69 TIGR01360 aden_kin_iso1 adenyl 99.4 1.9E-12 4.1E-17 116.7 12.1 164 37-201 2-185 (188)
70 PRK13808 adenylate kinase; Pro 99.4 9.5E-13 2.1E-17 127.2 10.6 164 39-203 1-193 (333)
71 TIGR01351 adk adenylate kinase 99.4 1.3E-12 2.9E-17 120.1 11.2 162 41-202 2-210 (210)
72 PLN02674 adenylate kinase 99.4 1.5E-12 3.4E-17 121.0 11.4 165 36-201 29-243 (244)
73 PLN02459 probable adenylate ki 99.4 2E-12 4.3E-17 120.8 11.7 170 33-203 24-251 (261)
74 PRK06217 hypothetical protein; 99.4 2E-11 4.2E-16 109.9 17.5 153 39-203 2-179 (183)
75 PRK14526 adenylate kinase; Pro 99.4 2.8E-12 6.1E-17 117.5 12.0 163 39-203 1-209 (211)
76 PTZ00088 adenylate kinase 1; P 99.4 4.4E-12 9.6E-17 117.5 12.4 119 36-154 4-131 (229)
77 COG0283 Cmk Cytidylate kinase 99.4 6.9E-12 1.5E-16 112.0 12.4 161 37-202 3-218 (222)
78 PRK00279 adk adenylate kinase; 99.4 4.1E-12 9E-17 117.3 11.5 163 39-202 1-213 (215)
79 PRK04182 cytidylate kinase; Pr 99.4 2.3E-12 4.9E-17 115.3 9.1 157 39-203 1-173 (180)
80 PRK14730 coaE dephospho-CoA ki 99.4 3.3E-12 7.3E-17 115.8 10.0 154 39-201 2-192 (195)
81 PRK14529 adenylate kinase; Pro 99.3 9.7E-12 2.1E-16 114.3 12.7 163 39-201 1-222 (223)
82 TIGR03574 selen_PSTK L-seryl-t 99.3 1.1E-11 2.4E-16 117.0 13.6 154 40-203 1-169 (249)
83 PRK01184 hypothetical protein; 99.3 1.3E-11 2.8E-16 111.1 12.9 158 39-201 2-176 (184)
84 PRK14528 adenylate kinase; Pro 99.3 9.7E-12 2.1E-16 112.1 11.9 162 39-200 2-185 (186)
85 PRK08356 hypothetical protein; 99.3 4.1E-11 8.8E-16 108.9 15.2 160 38-201 5-190 (195)
86 COG1116 TauB ABC-type nitrate/ 99.3 1.8E-12 3.9E-17 118.6 5.8 133 2-154 3-139 (248)
87 COG0563 Adk Adenylate kinase a 99.3 2E-11 4.4E-16 108.7 12.0 159 39-201 1-177 (178)
88 COG1936 Predicted nucleotide k 99.3 1.5E-11 3.3E-16 106.0 10.4 144 39-202 1-155 (180)
89 PRK00081 coaE dephospho-CoA ki 99.3 8.4E-12 1.8E-16 113.3 9.4 156 39-201 3-191 (194)
90 PRK14733 coaE dephospho-CoA ki 99.3 1.8E-11 3.9E-16 111.1 11.2 162 36-201 4-196 (204)
91 TIGR02173 cyt_kin_arch cytidyl 99.3 1.1E-11 2.4E-16 109.9 9.5 154 39-201 1-170 (171)
92 COG0645 Predicted kinase [Gene 99.3 5.9E-11 1.3E-15 102.2 13.3 136 39-175 2-148 (170)
93 PRK05506 bifunctional sulfate 99.3 1.9E-11 4.1E-16 130.3 12.7 160 35-202 457-627 (632)
94 KOG3079|consensus 99.3 3.4E-11 7.3E-16 104.6 11.5 170 33-203 3-193 (195)
95 TIGR02322 phosphon_PhnN phosph 99.3 2.3E-10 4.9E-15 102.5 16.8 155 38-203 1-178 (179)
96 TIGR00152 dephospho-CoA kinase 99.3 1.1E-11 2.3E-16 112.1 7.9 153 40-198 1-187 (188)
97 COG1126 GlnQ ABC-type polar am 99.3 4.5E-12 9.7E-17 113.0 5.1 97 1-107 1-103 (240)
98 cd01428 ADK Adenylate kinase ( 99.3 1.7E-11 3.6E-16 111.1 8.9 116 40-155 1-127 (194)
99 PRK08233 hypothetical protein; 99.3 7.3E-11 1.6E-15 105.7 12.8 159 37-203 2-177 (182)
100 PTZ00451 dephospho-CoA kinase; 99.2 4E-11 8.8E-16 111.7 10.1 155 39-201 2-205 (244)
101 PLN02422 dephospho-CoA kinase 99.2 5.8E-11 1.3E-15 109.6 10.9 154 39-202 2-193 (232)
102 COG0237 CoaE Dephospho-CoA kin 99.2 1.7E-11 3.7E-16 110.9 7.1 151 38-202 2-191 (201)
103 KOG3347|consensus 99.2 9.7E-11 2.1E-15 98.0 10.7 107 36-154 5-114 (176)
104 KOG0635|consensus 99.2 8.1E-11 1.8E-15 98.4 10.2 157 35-203 28-200 (207)
105 COG4088 Predicted nucleotide k 99.2 1.3E-10 2.8E-15 102.6 11.8 149 39-193 2-163 (261)
106 PRK14731 coaE dephospho-CoA ki 99.2 2.5E-11 5.5E-16 111.3 7.9 158 37-201 4-200 (208)
107 PRK14734 coaE dephospho-CoA ki 99.2 3.7E-11 7.9E-16 109.5 8.5 156 39-201 2-192 (200)
108 cd02027 APSK Adenosine 5'-phos 99.2 1.2E-10 2.7E-15 101.0 10.8 106 40-150 1-114 (149)
109 TIGR00017 cmk cytidylate kinas 99.2 2.7E-10 5.9E-15 104.9 13.1 156 38-200 2-216 (217)
110 PRK05416 glmZ(sRNA)-inactivati 99.2 3.1E-10 6.7E-15 108.5 13.6 143 37-201 5-158 (288)
111 PRK08118 topology modulation p 99.2 2.6E-10 5.7E-15 100.8 12.1 99 39-154 2-100 (167)
112 PF01121 CoaE: Dephospho-CoA k 99.2 8.3E-12 1.8E-16 111.4 2.2 144 39-192 1-180 (180)
113 PRK07261 topology modulation p 99.2 3E-10 6.6E-15 100.9 12.0 100 39-154 1-100 (171)
114 PRK13975 thymidylate kinase; P 99.2 3.1E-10 6.7E-15 103.1 11.9 165 38-204 2-191 (196)
115 COG1117 PstB ABC-type phosphat 99.1 5.8E-11 1.2E-15 105.6 6.3 98 2-110 7-116 (253)
116 PRK06547 hypothetical protein; 99.1 6.4E-10 1.4E-14 98.7 13.0 109 35-156 12-141 (172)
117 COG3839 MalK ABC-type sugar tr 99.1 1.8E-11 3.8E-16 118.4 2.9 136 2-154 3-142 (338)
118 PRK11860 bifunctional 3-phosph 99.1 3.1E-10 6.6E-15 121.4 12.3 165 37-207 441-659 (661)
119 PRK14732 coaE dephospho-CoA ki 99.1 2.4E-10 5.2E-15 103.7 9.4 154 40-200 1-187 (196)
120 COG3709 Uncharacterized compon 99.1 2.9E-09 6.4E-14 90.4 14.6 156 37-203 4-182 (192)
121 cd02022 DPCK Dephospho-coenzym 99.1 1.5E-10 3.1E-15 103.8 7.0 145 40-191 1-178 (179)
122 PRK12339 2-phosphoglycerate ki 99.1 1.1E-09 2.4E-14 99.3 12.7 118 37-155 2-142 (197)
123 TIGR01663 PNK-3'Pase polynucle 99.1 1.6E-09 3.5E-14 111.3 15.3 122 33-175 364-495 (526)
124 COG3842 PotA ABC-type spermidi 99.1 8.4E-11 1.8E-15 114.3 5.5 137 2-154 5-145 (352)
125 PRK14737 gmk guanylate kinase; 99.1 1.7E-09 3.7E-14 97.3 13.5 157 36-202 2-183 (186)
126 PRK05480 uridine/cytidine kina 99.1 2.2E-09 4.8E-14 98.6 14.5 160 36-201 4-206 (209)
127 PRK00023 cmk cytidylate kinase 99.1 1.5E-09 3.2E-14 100.7 13.1 39 37-75 3-41 (225)
128 PRK04040 adenylate kinase; Pro 99.1 1.4E-09 3.1E-14 98.0 12.4 160 38-201 2-187 (188)
129 COG3638 ABC-type phosphate/pho 99.1 8.9E-11 1.9E-15 106.1 4.2 99 1-109 2-109 (258)
130 PRK00698 tmk thymidylate kinas 99.1 1.8E-09 3.8E-14 98.7 12.8 164 37-201 2-200 (205)
131 cd02020 CMPK Cytidine monophos 99.1 4.6E-10 9.9E-15 96.8 8.4 103 40-153 1-103 (147)
132 KOG3220|consensus 99.1 7.5E-10 1.6E-14 97.4 9.3 157 39-202 2-193 (225)
133 PF00406 ADK: Adenylate kinase 99.0 3.6E-10 7.9E-15 98.3 6.8 109 43-152 1-122 (151)
134 TIGR00041 DTMP_kinase thymidyl 99.0 4.2E-09 9.1E-14 95.5 13.7 160 37-197 2-195 (195)
135 PF13207 AAA_17: AAA domain; P 99.0 2.8E-10 6.1E-15 94.9 5.4 108 40-153 1-110 (121)
136 cd01672 TMPK Thymidine monopho 99.0 3.7E-09 8E-14 95.8 13.0 163 39-201 1-198 (200)
137 COG2884 FtsE Predicted ATPase 99.0 1.9E-10 4.2E-15 100.5 4.1 100 2-110 1-108 (223)
138 PRK03333 coaE dephospho-CoA ki 99.0 3.7E-10 8.1E-15 113.3 6.5 154 39-202 2-191 (395)
139 PRK14738 gmk guanylate kinase; 99.0 1.1E-08 2.4E-13 93.7 15.6 163 35-202 10-193 (206)
140 COG1125 OpuBA ABC-type proline 99.0 1.8E-10 4E-15 105.0 3.7 139 2-154 1-144 (309)
141 PF03668 ATP_bind_2: P-loop AT 99.0 7.9E-09 1.7E-13 97.1 14.2 139 39-202 2-155 (284)
142 PRK13973 thymidylate kinase; P 99.0 7.1E-09 1.5E-13 95.5 13.8 166 37-202 2-205 (213)
143 PRK00300 gmk guanylate kinase; 99.0 7.6E-09 1.7E-13 94.6 13.8 160 35-203 2-184 (205)
144 PLN02842 nucleotide kinase 99.0 1.7E-09 3.8E-14 109.7 9.8 159 43-201 2-200 (505)
145 TIGR03263 guanyl_kin guanylate 99.0 1E-08 2.2E-13 91.7 13.4 158 38-201 1-178 (180)
146 COG1120 FepC ABC-type cobalami 99.0 1.9E-10 4.1E-15 107.2 1.5 94 1-104 1-99 (258)
147 TIGR03575 selen_PSTK_euk L-ser 98.9 2.8E-08 6.1E-13 96.9 16.2 145 41-186 2-210 (340)
148 cd02023 UMPK Uridine monophosp 98.9 1.7E-08 3.7E-13 91.8 13.7 155 40-199 1-193 (198)
149 cd02811 IDI-2_FMN Isopentenyl- 98.9 2.7E-09 5.8E-14 104.4 8.8 170 220-405 19-209 (326)
150 COG1136 SalX ABC-type antimicr 98.9 7.4E-10 1.6E-14 101.2 4.2 103 2-110 1-112 (226)
151 PLN02924 thymidylate kinase 98.9 3E-08 6.4E-13 91.6 14.4 166 35-203 13-203 (220)
152 COG1124 DppF ABC-type dipeptid 98.9 9.6E-10 2.1E-14 100.0 4.4 84 1-90 2-91 (252)
153 PRK12338 hypothetical protein; 98.9 2.4E-08 5.2E-13 96.1 14.0 161 36-203 2-204 (319)
154 COG1118 CysA ABC-type sulfate/ 98.9 7.8E-10 1.7E-14 103.6 3.2 97 1-107 1-103 (345)
155 PRK09518 bifunctional cytidyla 98.9 1.3E-08 2.9E-13 109.8 13.2 48 39-86 2-49 (712)
156 PF08433 KTI12: Chromatin asso 98.9 2.5E-08 5.5E-13 94.7 13.1 151 39-197 2-169 (270)
157 COG0411 LivG ABC-type branched 98.9 4.7E-10 1E-14 102.1 0.9 99 2-110 4-108 (250)
158 COG1135 AbcC ABC-type metal io 98.9 1.4E-09 3.1E-14 102.1 3.8 104 2-110 1-112 (339)
159 smart00072 GuKc Guanylate kina 98.9 3E-08 6.6E-13 89.2 12.3 157 38-201 2-180 (184)
160 TIGR00235 udk uridine kinase. 98.9 7.7E-08 1.7E-12 88.2 15.0 158 35-198 3-199 (207)
161 COG4525 TauB ABC-type taurine 98.9 5.9E-09 1.3E-13 91.6 7.0 97 2-110 3-103 (259)
162 COG0194 Gmk Guanylate kinase [ 98.8 3.6E-08 7.7E-13 86.5 11.7 116 37-155 3-137 (191)
163 PRK06696 uridine kinase; Valid 98.8 1.2E-08 2.6E-13 94.8 8.3 41 35-75 19-64 (223)
164 COG4152 ABC-type uncharacteriz 98.8 1.4E-08 3.1E-13 92.2 8.4 135 1-154 1-139 (300)
165 cd02024 NRK1 Nicotinamide ribo 98.8 3.2E-08 6.9E-13 88.8 10.6 36 40-75 1-37 (187)
166 COG1127 Ttg2A ABC-type transpo 98.8 2.2E-09 4.9E-14 97.3 3.1 99 2-110 8-114 (263)
167 PRK05437 isopentenyl pyrophosp 98.8 1.1E-08 2.5E-13 100.9 8.2 169 221-405 28-217 (352)
168 PRK06761 hypothetical protein; 98.8 8.6E-09 1.9E-13 97.9 7.0 120 38-158 3-132 (282)
169 PRK10851 sulfate/thiosulfate t 98.8 2.1E-09 4.6E-14 106.4 2.7 141 1-154 1-145 (353)
170 PRK09270 nucleoside triphospha 98.8 1.9E-07 4.2E-12 87.0 15.6 152 35-189 30-223 (229)
171 COG3840 ThiQ ABC-type thiamine 98.8 7.9E-09 1.7E-13 89.8 5.4 91 2-105 1-95 (231)
172 COG1660 Predicted P-loop-conta 98.8 4E-08 8.7E-13 90.0 10.3 139 39-202 2-156 (286)
173 cd02030 NDUO42 NADH:Ubiquinone 98.8 6.3E-08 1.4E-12 89.6 11.8 65 134-199 144-217 (219)
174 COG4175 ProV ABC-type proline/ 98.8 1.9E-09 4.2E-14 101.2 1.4 148 2-155 4-174 (386)
175 COG4639 Predicted kinase [Gene 98.8 8.4E-08 1.8E-12 81.4 10.7 121 39-169 3-132 (168)
176 TIGR03265 PhnT2 putative 2-ami 98.8 4.4E-09 9.5E-14 104.1 3.4 136 2-154 4-143 (353)
177 COG3845 ABC-type uncharacteriz 98.8 3.8E-09 8.2E-14 104.9 2.8 97 2-108 4-106 (501)
178 PRK12269 bifunctional cytidyla 98.7 5.6E-08 1.2E-12 105.4 11.9 49 37-85 33-81 (863)
179 COG1129 MglA ABC-type sugar tr 98.7 4.7E-09 1E-13 106.0 3.4 120 2-131 8-133 (500)
180 COG0396 sufC Cysteine desulfur 98.7 1.3E-09 2.7E-14 98.3 -0.8 89 1-98 2-98 (251)
181 PRK11432 fbpC ferric transport 98.7 5.7E-09 1.2E-13 103.2 3.5 136 2-154 6-145 (351)
182 KOG4238|consensus 98.7 1.3E-08 2.8E-13 96.6 5.5 157 36-204 48-221 (627)
183 PTZ00301 uridine kinase; Provi 98.7 3E-07 6.5E-12 84.2 14.3 155 38-197 3-199 (210)
184 COG0125 Tmk Thymidylate kinase 98.7 2.5E-07 5.3E-12 84.3 13.6 168 36-203 1-203 (208)
185 PF06414 Zeta_toxin: Zeta toxi 98.7 6.4E-08 1.4E-12 88.2 9.7 120 35-154 12-142 (199)
186 PRK11650 ugpC glycerol-3-phosp 98.7 5.3E-09 1.2E-13 103.6 2.6 136 2-154 3-143 (356)
187 PRK11607 potG putrescine trans 98.7 7.3E-09 1.6E-13 103.3 3.5 136 2-154 19-158 (377)
188 PRK09452 potA putrescine/sperm 98.7 7.2E-09 1.6E-13 103.3 2.9 136 2-154 14-153 (375)
189 COG4619 ABC-type uncharacteriz 98.7 1.3E-08 2.8E-13 87.4 3.6 47 26-72 17-67 (223)
190 COG1304 idi Isopentenyl diphos 98.7 2.4E-08 5.3E-13 97.9 5.5 83 322-428 86-168 (360)
191 COG1428 Deoxynucleoside kinase 98.7 1.4E-07 3E-12 84.4 9.8 31 36-66 2-32 (216)
192 cd01673 dNK Deoxyribonucleosid 98.7 1E-07 2.2E-12 86.3 9.2 28 40-67 1-28 (193)
193 TIGR01288 nodI ATP-binding ABC 98.7 1.2E-08 2.5E-13 99.3 3.2 92 1-102 3-98 (303)
194 cd03265 ABC_DrrA DrrA is the A 98.7 1.9E-08 4.1E-13 93.1 4.3 90 3-102 1-94 (220)
195 TIGR02314 ABC_MetN D-methionin 98.6 1.7E-08 3.6E-13 99.4 3.9 141 2-154 1-149 (343)
196 PLN02348 phosphoribulokinase 98.6 5E-07 1.1E-11 89.1 14.1 149 36-187 47-244 (395)
197 PRK11000 maltose/maltodextrin 98.6 1.3E-08 2.9E-13 101.4 3.1 92 2-104 3-98 (369)
198 COG4136 ABC-type uncharacteriz 98.6 1.4E-08 3.1E-13 85.5 2.6 90 1-101 1-97 (213)
199 PRK13537 nodulation ABC transp 98.6 1.3E-08 2.9E-13 99.0 2.8 91 2-102 7-101 (306)
200 COG4555 NatA ABC-type Na+ tran 98.6 3E-08 6.5E-13 87.7 4.7 77 2-87 1-81 (245)
201 COG0410 LivF ABC-type branched 98.6 2.4E-08 5.2E-13 90.4 4.2 96 2-107 3-104 (237)
202 PLN02165 adenylate isopentenyl 98.6 3.9E-07 8.4E-12 88.2 12.8 117 36-154 41-196 (334)
203 PF00625 Guanylate_kin: Guanyl 98.6 9.4E-08 2E-12 85.9 8.1 155 37-200 1-179 (183)
204 cd03296 ABC_CysA_sulfate_impor 98.6 1.9E-08 4E-13 94.4 3.5 62 1-72 1-66 (239)
205 TIGR03522 GldA_ABC_ATP gliding 98.6 1.4E-08 3E-13 98.6 2.6 91 1-101 1-95 (301)
206 PRK07667 uridine kinase; Provi 98.6 3.9E-07 8.5E-12 82.6 11.9 39 37-75 16-59 (193)
207 COG1131 CcmA ABC-type multidru 98.6 2.3E-08 5E-13 96.5 4.0 91 2-102 4-99 (293)
208 cd03259 ABC_Carb_Solutes_like 98.6 2.8E-08 6.1E-13 91.5 4.2 60 3-72 1-64 (213)
209 PRK13540 cytochrome c biogenes 98.6 2.3E-08 5.1E-13 91.1 3.6 61 2-72 1-65 (200)
210 cd03216 ABC_Carb_Monos_I This 98.6 1.7E-07 3.7E-12 82.5 8.9 60 3-72 1-64 (163)
211 TIGR00960 3a0501s02 Type II (G 98.6 2.4E-08 5.2E-13 92.2 3.6 63 2-72 1-67 (216)
212 PRK13536 nodulation factor exp 98.6 1.7E-08 3.7E-13 99.4 2.6 90 2-101 41-134 (340)
213 PRK13974 thymidylate kinase; P 98.6 1.1E-06 2.3E-11 80.9 14.3 163 37-202 2-205 (212)
214 COG0572 Udk Uridine kinase [Nu 98.6 8.4E-07 1.8E-11 80.5 13.1 147 36-187 6-190 (218)
215 PRK13538 cytochrome c biogenes 98.6 2.7E-08 5.9E-13 91.0 3.5 61 2-72 1-65 (204)
216 PF13238 AAA_18: AAA domain; P 98.6 1.9E-08 4.2E-13 84.3 2.3 109 41-155 1-114 (129)
217 PRK13539 cytochrome c biogenes 98.6 3.2E-08 6.8E-13 90.8 3.8 61 1-71 1-65 (207)
218 cd03261 ABC_Org_Solvent_Resist 98.6 2.9E-08 6.2E-13 92.9 3.4 90 3-102 1-98 (235)
219 cd03266 ABC_NatA_sodium_export 98.6 2.6E-08 5.6E-13 92.1 3.0 84 2-91 1-88 (218)
220 cd03219 ABC_Mj1267_LivG_branch 98.6 6.2E-08 1.3E-12 90.7 5.5 60 3-72 1-64 (236)
221 COG4181 Predicted ABC-type tra 98.6 2.9E-08 6.2E-13 85.5 2.8 140 3-154 7-155 (228)
222 PRK09169 hypothetical protein; 98.6 5.9E-08 1.3E-12 110.4 6.1 140 37-187 2109-2264(2316)
223 PRK12337 2-phosphoglycerate ki 98.6 6.3E-07 1.4E-11 90.0 12.6 120 36-155 253-406 (475)
224 TIGR03864 PQQ_ABC_ATP ABC tran 98.6 3.5E-08 7.6E-13 92.4 3.5 61 2-72 1-65 (236)
225 PRK13976 thymidylate kinase; P 98.6 7.3E-07 1.6E-11 81.7 11.9 164 39-202 1-200 (209)
226 PRK07429 phosphoribulokinase; 98.6 1.7E-06 3.7E-11 84.5 15.1 38 36-73 6-46 (327)
227 COG4674 Uncharacterized ABC-ty 98.6 2.4E-08 5.1E-13 87.9 1.9 96 2-107 5-107 (249)
228 TIGR03410 urea_trans_UrtE urea 98.6 6E-08 1.3E-12 90.4 4.7 89 3-101 1-95 (230)
229 COG4598 HisP ABC-type histidin 98.6 3.7E-08 8.1E-13 85.5 3.0 94 2-105 6-117 (256)
230 TIGR03258 PhnT 2-aminoethylpho 98.6 3.1E-08 6.7E-13 98.3 2.8 136 2-154 5-146 (362)
231 PRK11231 fecE iron-dicitrate t 98.5 3.2E-08 6.9E-13 93.8 2.6 61 1-71 1-65 (255)
232 PRK07933 thymidylate kinase; V 98.5 1.5E-06 3.3E-11 80.0 13.6 162 39-201 1-211 (213)
233 cd03263 ABC_subfamily_A The AB 98.5 4.4E-08 9.5E-13 90.7 3.4 81 3-91 1-85 (220)
234 PRK10895 lipopolysaccharide AB 98.5 5.2E-08 1.1E-12 91.5 4.0 61 2-72 3-67 (241)
235 TIGR01189 ccmA heme ABC export 98.5 4.6E-08 9.9E-13 89.0 3.5 60 3-72 1-64 (198)
236 cd03258 ABC_MetN_methionine_tr 98.5 5.9E-08 1.3E-12 90.6 4.3 65 2-72 1-69 (233)
237 PRK11153 metN DL-methionine tr 98.5 4.1E-08 9E-13 97.0 3.3 96 2-103 1-104 (343)
238 cd03224 ABC_TM1139_LivF_branch 98.5 6E-08 1.3E-12 89.8 4.1 90 3-102 1-96 (222)
239 PRK10070 glycine betaine trans 98.5 2.6E-08 5.7E-13 99.9 1.8 103 2-104 4-129 (400)
240 cd03230 ABC_DR_subfamily_A Thi 98.5 3.8E-08 8.2E-13 87.6 2.6 60 3-72 1-64 (173)
241 COG4161 ArtP ABC-type arginine 98.5 1.6E-07 3.5E-12 80.1 6.2 96 1-106 1-107 (242)
242 COG4608 AppF ABC-type oligopep 98.5 7.3E-08 1.6E-12 89.6 4.6 71 2-73 4-78 (268)
243 COG4167 SapF ABC-type antimicr 98.5 3.3E-08 7.2E-13 86.0 2.0 89 2-91 4-97 (267)
244 cd03264 ABC_drug_resistance_li 98.5 5.2E-08 1.1E-12 89.6 3.5 78 3-91 1-82 (211)
245 PRK09536 btuD corrinoid ABC tr 98.5 3.6E-08 7.9E-13 98.9 2.6 90 2-101 3-97 (402)
246 TIGR02151 IPP_isom_2 isopenten 98.5 3.1E-07 6.8E-12 90.2 9.1 172 222-406 22-211 (333)
247 cd02026 PRK Phosphoribulokinas 98.5 1.2E-06 2.6E-11 83.7 12.7 35 40-74 1-38 (273)
248 PRK11124 artP arginine transpo 98.5 5.9E-08 1.3E-12 91.2 3.7 62 1-72 1-66 (242)
249 cd03268 ABC_BcrA_bacitracin_re 98.5 6.6E-08 1.4E-12 88.7 3.9 89 3-102 1-93 (208)
250 cd03301 ABC_MalK_N The N-termi 98.5 4.8E-08 1E-12 89.9 2.9 60 3-72 1-64 (213)
251 cd03231 ABC_CcmA_heme_exporter 98.5 7E-08 1.5E-12 88.1 3.8 60 3-72 1-64 (201)
252 COG1122 CbiO ABC-type cobalt t 98.5 3.8E-08 8.2E-13 91.4 2.0 139 1-154 2-147 (235)
253 PRK14247 phosphate ABC transpo 98.5 6.3E-08 1.4E-12 91.5 3.4 51 2-62 3-53 (250)
254 cd03218 ABC_YhbG The ABC trans 98.5 9.6E-08 2.1E-12 89.1 4.5 90 3-102 1-96 (232)
255 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 1E-07 2.2E-12 88.6 4.5 77 2-90 4-84 (254)
256 cd03262 ABC_HisP_GlnQ_permease 98.5 7.6E-08 1.6E-12 88.6 3.5 60 3-72 1-64 (213)
257 TIGR03415 ABC_choXWV_ATP choli 98.5 5E-08 1.1E-12 97.2 2.4 146 3-154 1-173 (382)
258 PRK14267 phosphate ABC transpo 98.5 1.1E-07 2.3E-12 90.1 4.4 51 2-62 4-54 (253)
259 PRK04220 2-phosphoglycerate ki 98.5 1.9E-06 4E-11 82.4 12.8 120 36-155 90-237 (301)
260 PRK09493 glnQ glutamine ABC tr 98.5 6.4E-08 1.4E-12 90.9 2.8 61 2-72 1-65 (240)
261 TIGR00972 3a0107s01c2 phosphat 98.5 8.1E-08 1.7E-12 90.6 3.5 51 2-62 1-51 (247)
262 PRK14250 phosphate ABC transpo 98.5 8.4E-08 1.8E-12 90.1 3.6 62 1-72 2-67 (241)
263 PF02223 Thymidylate_kin: Thym 98.5 6.8E-07 1.5E-11 80.4 9.3 154 43-197 1-186 (186)
264 cd03269 ABC_putative_ATPase Th 98.5 8.2E-08 1.8E-12 88.2 3.1 60 3-72 1-64 (210)
265 PRK11264 putative amino-acid A 98.5 1.2E-07 2.6E-12 89.5 4.3 61 2-72 3-67 (250)
266 PRK11300 livG leucine/isoleuci 98.5 1.1E-07 2.3E-12 90.2 3.9 61 2-72 5-69 (255)
267 PRK14269 phosphate ABC transpo 98.5 1.2E-07 2.7E-12 89.3 4.0 62 1-72 1-69 (246)
268 PRK10908 cell division protein 98.5 9.2E-08 2E-12 88.7 3.0 61 2-72 1-66 (222)
269 cd03246 ABCC_Protease_Secretio 98.4 1.1E-06 2.4E-11 78.1 9.8 62 3-72 1-66 (173)
270 COG4604 CeuD ABC-type enteroch 98.4 1.6E-07 3.4E-12 82.9 4.0 62 2-73 1-66 (252)
271 TIGR02315 ABC_phnC phosphonate 98.4 1.3E-07 2.8E-12 88.9 3.7 61 2-72 1-66 (243)
272 PRK14256 phosphate ABC transpo 98.4 1.2E-07 2.7E-12 89.6 3.6 51 2-62 4-54 (252)
273 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.4 1.4E-06 3E-11 75.1 9.8 50 3-62 1-50 (144)
274 PRK11248 tauB taurine transpor 98.4 1.2E-07 2.7E-12 89.8 3.5 61 2-72 1-65 (255)
275 TIGR03411 urea_trans_UrtD urea 98.4 1.3E-07 2.8E-12 88.8 3.7 61 2-72 2-66 (242)
276 TIGR02673 FtsE cell division A 98.4 1.5E-07 3.2E-12 86.8 3.8 62 2-72 1-66 (214)
277 cd03256 ABC_PhnC_transporter A 98.4 1.2E-07 2.6E-12 89.0 3.3 61 3-72 1-65 (241)
278 COG2274 SunT ABC-type bacterio 98.4 1.4E-07 3.1E-12 100.6 4.1 64 2-73 471-538 (709)
279 TIGR03005 ectoine_ehuA ectoine 98.4 1.1E-07 2.4E-12 89.9 3.0 60 3-72 1-64 (252)
280 PRK14240 phosphate transporter 98.4 1.5E-07 3.3E-12 88.9 3.9 61 2-72 3-72 (250)
281 cd03257 ABC_NikE_OppD_transpor 98.4 1.5E-07 3.3E-12 87.5 3.9 65 2-72 1-69 (228)
282 COG1101 PhnK ABC-type uncharac 98.4 2.1E-07 4.6E-12 83.2 4.4 102 2-108 1-109 (263)
283 PRK10247 putative ABC transpor 98.4 1.7E-07 3.8E-12 87.0 4.1 60 2-71 7-70 (225)
284 PRK14272 phosphate ABC transpo 98.4 2E-07 4.2E-12 88.2 4.4 61 2-72 4-73 (252)
285 PRK13638 cbiO cobalt transport 98.4 1.4E-07 3E-12 90.2 3.4 61 2-72 1-65 (271)
286 PRK14274 phosphate ABC transpo 98.4 1.7E-07 3.7E-12 89.0 3.9 51 2-62 12-62 (259)
287 cd03235 ABC_Metallic_Cations A 98.4 2E-07 4.3E-12 85.8 4.2 58 4-71 1-62 (213)
288 PRK11247 ssuB aliphatic sulfon 98.4 1E-07 2.2E-12 90.3 2.3 58 2-69 12-73 (257)
289 PRK09984 phosphonate/organopho 98.4 1.5E-07 3.2E-12 89.6 3.4 51 2-62 4-54 (262)
290 cd03233 ABC_PDR_domain1 The pl 98.4 2.5E-07 5.5E-12 84.5 4.7 54 3-62 4-57 (202)
291 TIGR01978 sufC FeS assembly AT 98.4 2.1E-07 4.5E-12 87.5 4.2 60 3-72 1-66 (243)
292 PRK10744 pstB phosphate transp 98.4 2E-07 4.3E-12 88.6 3.9 51 2-62 13-63 (260)
293 cd03295 ABC_OpuCA_Osmoprotecti 98.4 1.8E-07 3.8E-12 88.0 3.5 61 3-72 1-65 (242)
294 cd03260 ABC_PstB_phosphate_tra 98.4 1.9E-07 4.1E-12 86.9 3.6 50 3-62 1-50 (227)
295 PRK14270 phosphate ABC transpo 98.4 2.3E-07 4.9E-12 87.7 4.1 61 2-72 4-73 (251)
296 PRK10771 thiQ thiamine transpo 98.4 1.8E-07 4E-12 87.3 3.3 59 2-72 1-63 (232)
297 cd03247 ABCC_cytochrome_bd The 98.4 9.9E-07 2.2E-11 78.8 7.9 61 3-71 1-65 (178)
298 PRK11614 livF leucine/isoleuci 98.4 1.7E-07 3.7E-12 87.8 3.0 61 2-72 5-69 (237)
299 PRK10253 iron-enterobactin tra 98.4 1.6E-07 3.5E-12 89.5 2.9 61 2-72 7-71 (265)
300 PRK14262 phosphate ABC transpo 98.4 2.1E-07 4.5E-12 87.9 3.5 61 2-72 3-72 (250)
301 PRK13548 hmuV hemin importer A 98.4 2.1E-07 4.5E-12 88.4 3.4 61 2-72 2-66 (258)
302 cd03228 ABCC_MRP_Like The MRP 98.4 2.1E-06 4.7E-11 76.1 9.8 62 3-72 1-66 (171)
303 cd03222 ABC_RNaseL_inhibitor T 98.4 1.7E-06 3.6E-11 77.2 9.0 46 6-62 4-49 (177)
304 PRK15079 oligopeptide ABC tran 98.4 1.7E-07 3.8E-12 92.0 2.9 89 2-90 8-107 (331)
305 PRK14261 phosphate ABC transpo 98.4 2.4E-07 5.2E-12 87.7 3.8 50 2-61 6-55 (253)
306 PRK10575 iron-hydroxamate tran 98.4 2.2E-07 4.7E-12 88.6 3.4 61 2-72 11-75 (265)
307 cd02028 UMPK_like Uridine mono 98.4 6.7E-06 1.4E-10 73.6 12.8 36 40-75 1-41 (179)
308 PRK13649 cbiO cobalt transport 98.4 1.9E-07 4.1E-12 89.8 2.9 67 1-72 1-71 (280)
309 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.4 2.2E-07 4.8E-12 85.8 3.3 64 3-72 1-68 (218)
310 TIGR02323 CP_lyasePhnK phospho 98.4 3E-07 6.6E-12 87.0 4.1 59 2-70 3-65 (253)
311 PRK14253 phosphate ABC transpo 98.4 3.4E-07 7.4E-12 86.4 4.5 51 2-62 3-53 (249)
312 COG3896 Chloramphenicol 3-O-ph 98.4 5.6E-06 1.2E-10 70.3 11.2 162 35-202 20-204 (205)
313 TIGR01277 thiQ thiamine ABC tr 98.4 2.2E-07 4.8E-12 85.5 3.1 87 3-102 1-91 (213)
314 PRK11831 putative ABC transpor 98.4 2.3E-07 5E-12 88.6 3.2 61 2-72 7-71 (269)
315 cd03229 ABC_Class3 This class 98.4 2.5E-07 5.4E-12 82.7 3.3 60 3-72 1-64 (178)
316 TIGR01186 proV glycine betaine 98.4 1.7E-07 3.8E-12 92.9 2.4 122 27-154 8-138 (363)
317 cd03298 ABC_ThiQ_thiamine_tran 98.4 2.4E-07 5.1E-12 85.2 3.1 76 3-91 1-80 (211)
318 cd03225 ABC_cobalt_CbiO_domain 98.4 3.3E-07 7.3E-12 84.2 4.1 61 4-72 1-65 (211)
319 PRK13646 cbiO cobalt transport 98.4 2.4E-07 5.2E-12 89.3 3.2 67 1-72 1-71 (286)
320 PRK11144 modC molybdate transp 98.4 2.7E-07 5.8E-12 91.6 3.6 88 2-102 1-97 (352)
321 KOG0058|consensus 98.3 3.4E-07 7.3E-12 95.2 4.4 64 3-73 466-533 (716)
322 PRK10619 histidine/lysine/argi 98.3 2.7E-07 5.8E-12 87.6 3.4 61 2-72 5-69 (257)
323 PRK15093 antimicrobial peptide 98.3 2.9E-07 6.2E-12 90.6 3.7 84 2-91 3-99 (330)
324 cd03213 ABCG_EPDR ABCG transpo 98.3 3.2E-07 7E-12 83.2 3.6 66 3-72 4-75 (194)
325 PLN02772 guanylate kinase 98.3 8.7E-06 1.9E-10 80.3 13.7 161 36-202 133-317 (398)
326 PRK14242 phosphate transporter 98.3 3.9E-07 8.4E-12 86.2 4.2 51 2-62 6-56 (253)
327 COG4778 PhnL ABC-type phosphon 98.3 3.5E-07 7.6E-12 78.8 3.5 58 2-62 4-61 (235)
328 PRK15112 antimicrobial peptide 98.3 3.6E-07 7.7E-12 87.2 4.0 70 2-72 4-77 (267)
329 PRK13543 cytochrome c biogenes 98.3 3.3E-07 7.1E-12 84.5 3.5 61 2-72 11-75 (214)
330 PRK13651 cobalt transporter AT 98.3 3E-07 6.5E-12 89.4 3.4 64 1-69 1-68 (305)
331 cd03300 ABC_PotA_N PotA is an 98.3 3.8E-07 8.3E-12 85.1 4.0 60 3-72 1-64 (232)
332 PRK14241 phosphate transporter 98.3 3.3E-07 7.1E-12 87.0 3.6 51 2-62 4-54 (258)
333 PRK09580 sufC cysteine desulfu 98.3 3.6E-07 7.8E-12 86.2 3.8 50 2-61 1-50 (248)
334 PRK10584 putative ABC transpor 98.3 3.6E-07 7.8E-12 85.0 3.7 65 2-72 6-74 (228)
335 PRK14239 phosphate transporter 98.3 3.8E-07 8.3E-12 86.2 3.9 61 2-72 5-74 (252)
336 PRK13637 cbiO cobalt transport 98.3 2.8E-07 6E-12 88.9 2.9 85 1-90 1-92 (287)
337 PRK10762 D-ribose transporter 98.3 2.4E-07 5.2E-12 96.5 2.6 61 2-72 4-68 (501)
338 PF00485 PRK: Phosphoribulokin 98.3 9.1E-07 2E-11 80.2 6.1 34 40-73 1-43 (194)
339 PRK14246 phosphate ABC transpo 98.3 3.7E-07 8.1E-12 86.6 3.6 51 2-62 10-60 (257)
340 PRK14251 phosphate ABC transpo 98.3 3.9E-07 8.5E-12 86.1 3.8 51 2-62 4-54 (251)
341 PRK14243 phosphate transporter 98.3 5.1E-07 1.1E-11 86.0 4.5 51 2-62 10-60 (264)
342 PRK13541 cytochrome c biogenes 98.3 3.7E-07 8E-12 82.9 3.4 60 2-72 1-64 (195)
343 COG4987 CydC ABC-type transpor 98.3 6.8E-07 1.5E-11 89.9 5.5 63 2-72 336-402 (573)
344 KOG3877|consensus 98.3 9.2E-06 2E-10 75.1 12.3 169 31-200 63-294 (393)
345 TIGR03740 galliderm_ABC gallid 98.3 4E-07 8.6E-12 84.5 3.6 60 3-72 1-64 (223)
346 cd03226 ABC_cobalt_CbiO_domain 98.3 4.3E-07 9.3E-12 83.1 3.8 60 4-72 1-64 (205)
347 PRK13641 cbiO cobalt transport 98.3 3.1E-07 6.7E-12 88.6 2.9 67 1-72 1-71 (287)
348 PRK14248 phosphate ABC transpo 98.3 4.3E-07 9.2E-12 86.8 3.8 61 2-72 21-90 (268)
349 PRK13547 hmuV hemin importer A 98.3 3.6E-07 7.9E-12 87.4 3.3 51 2-62 1-51 (272)
350 PRK13647 cbiO cobalt transport 98.3 3.4E-07 7.3E-12 87.7 3.0 80 2-90 4-88 (274)
351 TIGR00968 3a0106s01 sulfate AB 98.3 3.5E-07 7.5E-12 85.7 3.0 60 3-72 1-64 (237)
352 PRK14238 phosphate transporter 98.3 4.5E-07 9.7E-12 86.8 3.9 51 2-62 24-74 (271)
353 TIGR03608 L_ocin_972_ABC putat 98.3 5.4E-07 1.2E-11 82.4 4.2 57 5-71 1-61 (206)
354 PRK11701 phnK phosphonate C-P 98.3 4.3E-07 9.4E-12 86.2 3.7 60 2-71 6-69 (258)
355 PRK14237 phosphate transporter 98.3 4.3E-07 9.4E-12 86.6 3.7 51 2-62 20-70 (267)
356 TIGR01188 drrA daunorubicin re 98.3 4.1E-07 8.9E-12 88.4 3.6 77 26-102 7-87 (302)
357 PRK14245 phosphate ABC transpo 98.3 4.6E-07 9.9E-12 85.6 3.8 50 2-61 3-52 (250)
358 PRK14249 phosphate ABC transpo 98.3 4.8E-07 1E-11 85.5 3.9 51 2-62 4-54 (251)
359 PRK10419 nikE nickel transport 98.3 4.8E-07 1E-11 86.4 3.9 70 2-72 3-76 (268)
360 cd03293 ABC_NrtD_SsuB_transpor 98.3 3.4E-07 7.3E-12 84.7 2.8 64 3-72 1-68 (220)
361 PRK13648 cbiO cobalt transport 98.3 4.3E-07 9.4E-12 86.8 3.6 63 2-72 7-73 (269)
362 TIGR02769 nickel_nikE nickel i 98.3 4.6E-07 9.9E-12 86.4 3.7 70 2-72 2-75 (265)
363 PRK09700 D-allose transporter 98.3 3.2E-07 6.9E-12 95.8 2.7 61 2-72 5-69 (510)
364 TIGR02868 CydC thiol reductant 98.3 3.3E-07 7.2E-12 96.1 2.7 62 3-73 335-400 (529)
365 PRK15453 phosphoribulokinase; 98.3 1.7E-05 3.6E-10 75.0 13.8 39 36-74 3-46 (290)
366 cd03214 ABC_Iron-Siderophores_ 98.3 5.1E-07 1.1E-11 80.9 3.6 58 4-71 1-62 (180)
367 PRK11308 dppF dipeptide transp 98.3 4.4E-07 9.6E-12 89.0 3.4 89 2-90 5-101 (327)
368 cd03232 ABC_PDR_domain2 The pl 98.3 9.8E-07 2.1E-11 79.9 5.4 54 2-61 3-56 (192)
369 cd03217 ABC_FeS_Assembly ABC-t 98.3 5.9E-07 1.3E-11 81.9 4.0 60 3-72 1-66 (200)
370 COG1123 ATPase components of v 98.3 6.3E-07 1.4E-11 91.4 4.6 106 2-107 280-395 (539)
371 cd03292 ABC_FtsE_transporter F 98.3 4.1E-07 9E-12 83.7 3.0 61 3-72 1-65 (214)
372 PRK14255 phosphate ABC transpo 98.3 5.4E-07 1.2E-11 85.2 3.8 50 2-61 5-54 (252)
373 PRK13635 cbiO cobalt transport 98.3 5E-07 1.1E-11 86.8 3.6 63 2-72 5-71 (279)
374 cd03252 ABCC_Hemolysin The ABC 98.3 5.6E-07 1.2E-11 84.3 3.8 62 3-72 1-66 (237)
375 PRK14273 phosphate ABC transpo 98.3 5.8E-07 1.3E-11 85.1 3.9 51 2-62 7-57 (254)
376 PRK13652 cbiO cobalt transport 98.3 4.3E-07 9.2E-12 87.2 3.0 62 2-72 3-68 (277)
377 COG2019 AdkA Archaeal adenylat 98.3 6.3E-06 1.4E-10 70.9 9.7 159 38-201 4-186 (189)
378 PRK13640 cbiO cobalt transport 98.3 5.2E-07 1.1E-11 86.8 3.6 63 2-72 5-74 (282)
379 PRK14259 phosphate ABC transpo 98.3 5.1E-07 1.1E-11 86.2 3.5 51 2-62 13-63 (269)
380 PRK11819 putative ABC transpor 98.3 5.5E-07 1.2E-11 94.9 4.0 51 2-62 6-57 (556)
381 COG4559 ABC-type hemin transpo 98.3 1E-06 2.2E-11 78.8 4.9 62 2-73 1-66 (259)
382 PRK10938 putative molybdenum t 98.3 6.7E-07 1.5E-11 92.9 4.6 60 2-71 3-66 (490)
383 PRK13634 cbiO cobalt transport 98.3 4.8E-07 1E-11 87.4 3.2 67 1-72 1-71 (290)
384 cd03244 ABCC_MRP_domain2 Domai 98.3 6.4E-07 1.4E-11 82.9 3.9 62 3-72 3-68 (221)
385 PRK13632 cbiO cobalt transport 98.3 5.9E-07 1.3E-11 85.9 3.7 63 2-72 7-73 (271)
386 TIGR03873 F420-0_ABC_ATP propo 98.3 5.3E-07 1.2E-11 85.5 3.3 60 3-72 2-65 (256)
387 TIGR02324 CP_lyasePhnL phospho 98.3 7.4E-07 1.6E-11 82.7 4.1 65 2-69 1-69 (224)
388 cd02025 PanK Pantothenate kina 98.3 4E-06 8.6E-11 77.6 8.8 36 40-75 1-43 (220)
389 PRK14266 phosphate ABC transpo 98.3 7.5E-07 1.6E-11 84.1 4.0 52 1-62 2-53 (250)
390 CHL00131 ycf16 sulfate ABC tra 98.2 6.6E-07 1.4E-11 84.6 3.6 61 2-72 7-73 (252)
391 PRK14265 phosphate ABC transpo 98.2 7.5E-07 1.6E-11 85.4 4.0 61 2-72 20-89 (274)
392 PRK13633 cobalt transporter AT 98.2 6.6E-07 1.4E-11 86.0 3.5 67 2-72 4-74 (280)
393 PRK15439 autoinducer 2 ABC tra 98.2 3.5E-07 7.6E-12 95.4 1.8 61 2-72 11-75 (510)
394 TIGR02211 LolD_lipo_ex lipopro 98.2 6.4E-07 1.4E-11 82.9 3.3 65 2-72 1-69 (221)
395 COG0444 DppD ABC-type dipeptid 98.2 1.5E-06 3.2E-11 82.8 5.8 99 3-107 2-116 (316)
396 PRK14260 phosphate ABC transpo 98.2 7.3E-07 1.6E-11 84.7 3.7 51 2-62 7-57 (259)
397 PRK11022 dppD dipeptide transp 98.2 5.9E-07 1.3E-11 88.2 3.2 66 1-72 2-75 (326)
398 TIGR00554 panK_bact pantothena 98.2 1.1E-05 2.4E-10 77.3 11.7 41 35-75 59-106 (290)
399 PRK13644 cbiO cobalt transport 98.2 6E-07 1.3E-11 86.0 3.1 62 2-72 1-66 (274)
400 PRK15056 manganese/iron transp 98.2 5.2E-07 1.1E-11 86.4 2.7 62 2-72 6-71 (272)
401 PTZ00322 6-phosphofructo-2-kin 98.2 1.3E-05 2.8E-10 86.2 13.6 141 34-174 211-373 (664)
402 PRK11629 lolD lipoprotein tran 98.2 9E-07 1.9E-11 82.7 4.1 65 2-72 5-73 (233)
403 PRK14235 phosphate transporter 98.2 6.8E-07 1.5E-11 85.3 3.4 51 2-62 19-69 (267)
404 PRK09544 znuC high-affinity zi 98.2 6.5E-07 1.4E-11 84.6 3.2 51 2-62 4-54 (251)
405 PRK13643 cbiO cobalt transport 98.2 6.5E-07 1.4E-11 86.4 3.2 66 2-72 1-70 (288)
406 cd03215 ABC_Carb_Monos_II This 98.2 7.7E-07 1.7E-11 79.9 3.4 57 2-72 4-64 (182)
407 cd03250 ABCC_MRP_domain1 Domai 98.2 8.8E-07 1.9E-11 81.0 3.9 55 3-62 1-55 (204)
408 PRK13645 cbiO cobalt transport 98.2 6.3E-07 1.4E-11 86.6 3.0 65 2-71 6-74 (289)
409 PRK13639 cbiO cobalt transport 98.2 6.3E-07 1.4E-11 85.9 2.9 62 2-72 1-66 (275)
410 cd03245 ABCC_bacteriocin_expor 98.2 8.6E-07 1.9E-11 82.0 3.7 61 3-71 3-67 (220)
411 PRK13650 cbiO cobalt transport 98.2 6.6E-07 1.4E-11 85.9 3.1 82 2-90 4-90 (279)
412 PRK14271 phosphate ABC transpo 98.2 7.8E-07 1.7E-11 85.3 3.5 51 2-62 21-71 (276)
413 PRK13636 cbiO cobalt transport 98.2 7.1E-07 1.5E-11 85.9 3.2 62 2-72 5-70 (283)
414 cd03294 ABC_Pro_Gly_Bertaine T 98.2 5.9E-07 1.3E-11 85.8 2.6 46 27-72 39-88 (269)
415 PRK10636 putative ABC transpor 98.2 8.2E-07 1.8E-11 95.0 3.9 58 2-69 1-62 (638)
416 cd03251 ABCC_MsbA MsbA is an e 98.2 8.3E-07 1.8E-11 82.9 3.5 62 3-72 1-66 (234)
417 cd03248 ABCC_TAP TAP, the Tran 98.2 1.1E-06 2.3E-11 81.8 4.1 64 2-72 11-78 (226)
418 cd03369 ABCC_NFT1 Domain 2 of 98.2 1.3E-06 2.7E-11 80.1 4.6 62 2-71 6-71 (207)
419 PRK14236 phosphate transporter 98.2 8.9E-07 1.9E-11 84.8 3.6 51 2-62 25-75 (272)
420 cd03254 ABCC_Glucan_exporter_l 98.2 8.5E-07 1.9E-11 82.5 3.4 61 3-72 3-67 (229)
421 PRK14268 phosphate ABC transpo 98.2 7.8E-07 1.7E-11 84.5 3.1 51 2-62 12-62 (258)
422 cd03299 ABC_ModC_like Archeal 98.2 8.6E-07 1.9E-11 83.0 3.4 60 3-73 1-64 (235)
423 COG1134 TagH ABC-type polysacc 98.2 1.1E-06 2.3E-11 80.5 3.7 70 2-71 3-90 (249)
424 PRK13642 cbiO cobalt transport 98.2 9.8E-07 2.1E-11 84.7 3.7 64 2-72 4-71 (277)
425 KOG0057|consensus 98.2 1.4E-06 3E-11 87.8 4.8 80 2-91 351-435 (591)
426 PRK11288 araG L-arabinose tran 98.2 5.3E-07 1.2E-11 93.9 2.0 61 2-72 4-68 (501)
427 cd03289 ABCC_CFTR2 The CFTR su 98.2 1.2E-06 2.6E-11 83.8 4.1 62 3-72 3-67 (275)
428 cd03223 ABCD_peroxisomal_ALDP 98.2 1.4E-06 3E-11 77.0 4.1 51 3-62 1-51 (166)
429 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 1E-06 2.2E-11 92.9 3.7 51 2-62 4-55 (552)
430 PRK14254 phosphate ABC transpo 98.2 9.5E-07 2E-11 85.1 3.2 51 2-62 39-89 (285)
431 PRK14258 phosphate ABC transpo 98.2 1.1E-06 2.3E-11 83.7 3.4 51 2-62 7-57 (261)
432 PRK11147 ABC transporter ATPas 98.2 1E-06 2.3E-11 94.2 3.7 58 2-69 3-64 (635)
433 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.2 7.5E-07 1.6E-11 82.7 2.1 38 25-62 35-72 (224)
434 cd03267 ABC_NatA_like Similar 98.2 8.3E-07 1.8E-11 83.1 2.4 69 3-71 1-84 (236)
435 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 1.1E-06 2.4E-11 95.1 3.6 63 3-73 452-518 (686)
436 TIGR01306 GMP_reduct_2 guanosi 98.2 1.4E-05 3E-10 77.2 10.6 157 222-406 3-166 (321)
437 cd02029 PRK_like Phosphoribulo 98.2 4.5E-05 9.8E-10 71.6 13.5 35 40-74 1-40 (277)
438 TIGR03796 NHPM_micro_ABC1 NHPM 98.2 1.3E-06 2.8E-11 94.9 3.9 64 2-73 477-544 (710)
439 PRK13631 cbiO cobalt transport 98.2 1.3E-06 2.9E-11 85.4 3.5 64 2-70 21-88 (320)
440 COG4133 CcmA ABC-type transpor 98.2 5.6E-06 1.2E-10 72.8 7.0 63 1-73 1-67 (209)
441 COG2074 2-phosphoglycerate kin 98.2 1.3E-05 2.7E-10 73.5 9.5 119 35-155 86-232 (299)
442 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 1.4E-06 3E-11 81.7 3.4 62 3-71 1-66 (238)
443 COG4185 Uncharacterized protei 98.1 1.1E-05 2.5E-10 68.8 8.5 124 38-170 2-137 (187)
444 PRK14252 phosphate ABC transpo 98.1 1.3E-06 2.9E-11 83.2 3.2 51 2-62 16-66 (265)
445 PRK15064 ABC transporter ATP-b 98.1 1.5E-06 3.3E-11 91.2 3.9 51 2-62 1-51 (530)
446 PRK13549 xylose transporter AT 98.1 1.2E-06 2.7E-11 91.3 3.3 61 2-72 5-71 (506)
447 PRK14244 phosphate ABC transpo 98.1 1.7E-06 3.7E-11 81.7 3.8 49 4-62 7-55 (251)
448 cd03253 ABCC_ATM1_transporter 98.1 1.5E-06 3.3E-11 81.3 3.3 61 3-72 1-65 (236)
449 PRK10418 nikD nickel transport 98.1 1.8E-06 3.9E-11 81.7 3.9 50 2-62 4-53 (254)
450 PRK14275 phosphate ABC transpo 98.1 1.6E-06 3.4E-11 83.7 3.3 50 2-61 39-88 (286)
451 COG0488 Uup ATPase components 98.1 2.7E-06 5.9E-11 88.0 5.2 51 2-62 3-53 (530)
452 cd00071 GMPK Guanosine monopho 98.1 1.6E-05 3.5E-10 67.9 9.0 24 40-63 1-24 (137)
453 TIGR03375 type_I_sec_LssB type 98.1 1.7E-06 3.8E-11 93.7 3.7 64 2-73 463-530 (694)
454 PRK11176 lipid transporter ATP 98.1 2.5E-06 5.3E-11 90.7 4.5 62 3-72 342-407 (582)
455 PRK14264 phosphate ABC transpo 98.1 1.9E-06 4E-11 83.9 3.2 51 2-62 45-95 (305)
456 PRK09473 oppD oligopeptide tra 98.1 1.8E-06 3.8E-11 84.9 2.9 65 2-72 12-83 (330)
457 KOG3078|consensus 98.1 3.3E-06 7.2E-11 77.3 4.5 121 37-157 14-142 (235)
458 COG1119 ModF ABC-type molybden 98.1 3.4E-06 7.4E-11 77.2 4.5 51 2-62 31-81 (257)
459 PRK05439 pantothenate kinase; 98.1 2.4E-05 5.3E-10 75.6 10.5 41 35-75 83-130 (311)
460 TIGR02142 modC_ABC molybdenum 98.1 2E-06 4.4E-11 85.4 3.2 128 7-154 4-140 (354)
461 PRK10982 galactose/methyl gala 98.1 1.8E-06 4E-11 89.7 2.9 58 5-72 1-62 (491)
462 cd03288 ABCC_SUR2 The SUR doma 98.1 3.9E-06 8.4E-11 79.6 4.8 63 2-72 19-85 (257)
463 TIGR02857 CydD thiol reductant 98.1 2.6E-06 5.7E-11 89.4 4.0 63 3-73 321-387 (529)
464 TIGR01193 bacteriocin_ABC ABC- 98.1 2.3E-06 5E-11 93.0 3.5 61 3-72 474-538 (708)
465 COG4107 PhnK ABC-type phosphon 98.1 3.8E-06 8.3E-11 72.7 4.0 59 2-70 6-68 (258)
466 PRK14263 phosphate ABC transpo 98.1 2.7E-06 5.9E-11 80.9 3.5 51 2-62 8-58 (261)
467 KOG0055|consensus 98.1 4.6E-06 1E-10 91.8 5.6 81 3-90 988-1073(1228)
468 KOG0055|consensus 98.1 3E-06 6.5E-11 93.2 4.1 82 2-90 350-436 (1228)
469 TIGR03269 met_CoM_red_A2 methy 98.0 3.1E-06 6.7E-11 88.6 3.9 50 3-62 1-50 (520)
470 PLN02318 phosphoribulokinase/u 98.0 0.00012 2.5E-09 75.8 15.1 37 37-73 64-101 (656)
471 TIGR02982 heterocyst_DevA ABC 98.0 2.4E-06 5.2E-11 79.0 2.7 64 3-72 2-69 (220)
472 PRK11160 cysteine/glutathione 98.0 3.3E-06 7.1E-11 89.5 4.0 63 3-73 339-405 (574)
473 TIGR00958 3a01208 Conjugate Tr 98.0 3.5E-06 7.7E-11 91.4 4.3 64 3-73 479-546 (711)
474 PRK00091 miaA tRNA delta(2)-is 98.0 4.1E-05 8.9E-10 74.1 11.1 37 36-72 2-38 (307)
475 TIGR01842 type_I_sec_PrtD type 98.0 3.4E-06 7.3E-11 88.8 3.9 63 2-72 316-382 (544)
476 cd03297 ABC_ModC_molybdenum_tr 98.0 4E-06 8.6E-11 77.2 3.8 54 5-71 3-60 (214)
477 cd03234 ABCG_White The White s 98.0 3.8E-06 8.3E-11 78.0 3.8 54 3-62 4-57 (226)
478 COG1132 MdlB ABC-type multidru 98.0 3.6E-06 7.9E-11 89.1 3.9 62 3-73 329-394 (567)
479 TIGR02633 xylG D-xylose ABC tr 98.0 2.9E-06 6.3E-11 88.4 3.0 51 2-62 1-51 (500)
480 PRK10261 glutathione transport 98.0 3.6E-06 7.9E-11 89.9 3.7 55 2-62 12-66 (623)
481 cd00820 PEPCK_HprK Phosphoenol 98.0 3.9E-06 8.5E-11 67.8 3.0 45 27-73 4-48 (107)
482 PRK10636 putative ABC transpor 98.0 4.2E-06 9.2E-11 89.5 4.1 51 2-62 312-362 (638)
483 PLN03073 ABC transporter F fam 98.0 3.6E-06 7.7E-11 90.8 3.5 50 2-61 177-226 (718)
484 PRK13546 teichoic acids export 98.0 4.3E-06 9.2E-11 79.6 3.6 61 2-62 4-74 (264)
485 TIGR01257 rim_protein retinal- 98.0 3E-06 6.5E-11 99.4 2.9 83 2-92 928-1014(2272)
486 cd03290 ABCC_SUR1_N The SUR do 98.0 5.6E-06 1.2E-10 76.5 4.2 60 4-72 2-65 (218)
487 PRK10938 putative molybdenum t 98.0 3.9E-06 8.6E-11 87.2 3.5 50 2-61 260-309 (490)
488 PRK15064 ABC transporter ATP-b 98.0 4E-06 8.7E-11 88.0 3.5 51 2-62 319-369 (530)
489 PRK14257 phosphate ABC transpo 98.0 5.8E-06 1.3E-10 81.2 4.4 63 2-72 80-151 (329)
490 PRK10261 glutathione transport 98.0 4E-06 8.8E-11 89.5 3.4 71 2-72 313-388 (623)
491 PRK10522 multidrug transporter 98.0 4.3E-06 9.4E-11 88.1 3.5 62 2-72 322-387 (547)
492 PRK05458 guanosine 5'-monophos 98.0 6.6E-05 1.4E-09 72.9 11.3 155 222-405 6-168 (326)
493 TIGR01257 rim_protein retinal- 98.0 3.2E-06 7E-11 99.1 2.7 93 2-102 1937-2033(2272)
494 COG4618 ArpD ABC-type protease 98.0 8.6E-06 1.9E-10 81.5 5.3 63 27-89 351-418 (580)
495 PRK15134 microcin C ABC transp 98.0 5.4E-06 1.2E-10 87.0 4.1 70 2-71 275-348 (529)
496 TIGR01846 type_I_sec_HlyB type 98.0 5.4E-06 1.2E-10 89.9 4.1 64 2-73 455-522 (694)
497 TIGR01166 cbiO cobalt transpor 98.0 4.6E-06 9.9E-11 75.3 3.0 46 27-72 7-56 (190)
498 COG4615 PvdE ABC-type sideroph 98.0 7.4E-06 1.6E-10 79.6 4.5 62 3-73 323-388 (546)
499 PRK11147 ABC transporter ATPas 98.0 4.4E-06 9.6E-11 89.5 3.3 51 2-62 319-369 (635)
500 PRK10790 putative multidrug tr 98.0 5.3E-06 1.1E-10 88.3 3.8 62 3-73 341-406 (592)
No 1
>KOG0538|consensus
Probab=100.00 E-value=1.1e-48 Score=356.52 Aligned_cols=224 Identities=38% Similarity=0.619 Sum_probs=195.3
Q ss_pred CHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccc
Q psy16778 189 PLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKL 264 (433)
Q Consensus 189 ~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~ 264 (433)
+.++....+.+.|++ ..+.|...++++.. |.+||++|.||||+|+||+++|++|++||+++++||+|||+|+|+|
T Consensus 3 ~~~dfe~~A~~~L~K-~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkm 81 (363)
T KOG0538|consen 3 NVDDFEALAKQQLPK-MAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKM 81 (363)
T ss_pred cHHHHHHHHHHhhhH-HHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHhc
Confidence 345666677777766 45666666665543 5899999999999999999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccC
Q psy16778 265 AHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG 344 (433)
Q Consensus 265 ~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G 344 (433)
+||+||.++||||.++|++|++|+++++|+|||++++|++.+|||||+++|+++++.+++|||++||+++++|||+|++|
T Consensus 82 a~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG 161 (363)
T KOG0538|consen 82 AHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLG 161 (363)
T ss_pred cCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCccchHHHHH-------------------------hhCCCcchhhh----hhccCCHHHHHHHHHHHH
Q psy16778 345 TRYADIRNKFNMPSHLNIEELA-------------------------EKTPQTTKWFQ----LYIYRDREITKSLVQRAE 395 (433)
Q Consensus 345 ~r~~~~~~~~~~~~~~s~e~i~-------------------------~~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~ 395 (433)
+|+.|++|+|..|..+++.+.. ..+|....|+| |++..++.++.++++.|.
T Consensus 162 ~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Av 241 (363)
T KOG0538|consen 162 RRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAV 241 (363)
T ss_pred CchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHH
Confidence 9999999999988755443321 12344456777 678889999999999999
Q ss_pred HcCCcEEEEecCCCCCCCchhh
Q psy16778 396 KAGYKALVLTVDTNVFGTRYAD 417 (433)
Q Consensus 396 ~~G~~aivlTvD~~~~g~r~~~ 417 (433)
++|+.+|+|| ..|-|+-|
T Consensus 242 e~G~~GIIVS----NHGgRQlD 259 (363)
T KOG0538|consen 242 EAGVAGIIVS----NHGGRQLD 259 (363)
T ss_pred HhCCceEEEe----CCCccccC
Confidence 9999999997 34666654
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=5.5e-44 Score=346.51 Aligned_cols=216 Identities=33% Similarity=0.553 Sum_probs=191.1
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++++...+++.+++ ..+.|.+.+++++. |+.||++|+|+||+|+|++++||+|++||+++++||++||+|+++
T Consensus 4 ~~i~D~e~~Ar~~lp~-~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~ 82 (367)
T PLN02493 4 TNVTEYDAIAKQKLPK-MVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQK 82 (367)
T ss_pred CCHHHHHHHHHHhCCH-HHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHHh
Confidence 5688999999999988 67888888888775 589999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||.++||||+++|++|++|+.+++++|||+++. +++.|||+|+++|+++++++++||+++||+++++|||+|++
T Consensus 83 l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 83 MAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcC-CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999874 46799999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHHh-------------------------hCCCcchhhh----hhccCCHHHHHHHHHHH
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELAE-------------------------KTPQTTKWFQ----LYIYRDREITKSLVQRA 394 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~~-------------------------~~~~~~~w~Q----ly~~~~~~~~~~~~~ra 394 (433)
|+|++|.|++|..|...++..+.. .+|+...|++ +++..|+.++.+++++|
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 999999999998875554444311 0122223443 45667899999999999
Q ss_pred HHcCCcEEEEe
Q psy16778 395 EKAGYKALVLT 405 (433)
Q Consensus 395 ~~~G~~aivlT 405 (433)
.++|+++|+|+
T Consensus 242 ~~~Gvd~I~Vs 252 (367)
T PLN02493 242 IQAGAAGIIVS 252 (367)
T ss_pred HHcCCCEEEEC
Confidence 99999999875
No 3
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.7e-43 Score=339.81 Aligned_cols=211 Identities=28% Similarity=0.418 Sum_probs=181.2
Q ss_pred HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778 192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE 267 (433)
Q Consensus 192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~ 267 (433)
|+...+++++++ ..+.|.+.+++++. |++||++|+|+||+|+||+++||+|++||+++++||+|||+|+++++||
T Consensus 2 D~~~~Ar~~lp~-~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 2 DYRSLAKKRLPR-MVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred hHHHHHHHhCCH-HHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 566778888887 56888888887775 5899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccc
Q psy16778 268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY 347 (433)
Q Consensus 268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~ 347 (433)
+||+++||||+++|++|++|+.|++++|||+++. +++.|||+|+. |+++++++++||+++||++||+|||+|++|+|+
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~-~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~ 158 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQA-DGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRE 158 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhc-CCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCch
Confidence 9999999999999999999999999999999875 46799999996 699999999999999999999999999999999
Q ss_pred cccccccCCCccchHHHHHhhCCC---------------------------------------cchhhh---------hh
Q psy16778 348 ADIRNKFNMPSHLNIEELAEKTPQ---------------------------------------TTKWFQ---------LY 379 (433)
Q Consensus 348 ~~~~~~~~~~~~~s~e~i~~~~~~---------------------------------------~~~w~Q---------ly 379 (433)
+|.|++|.+|...++..+.+...+ ...|-. ..
T Consensus 159 ~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~p 238 (361)
T cd04736 159 RDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHK 238 (361)
T ss_pred hhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCC
Confidence 999999988755444332221110 111211 23
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 380 IYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 380 ~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
+..++.++.+.+++|.++|+++|+||
T Consensus 239 viiKgV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 239 LLVKGIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred EEEecCCCHHHHHHHHHCCcCEEEEC
Confidence 44467888999999999999999997
No 4
>PLN02535 glycolate oxidase
Probab=100.00 E-value=9.6e-43 Score=338.47 Aligned_cols=216 Identities=33% Similarity=0.509 Sum_probs=187.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++++...+++++++ ..+.|.+.+++++. |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus 6 ~~i~d~~~~A~~~lp~-~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (364)
T PLN02535 6 VNVNEFQELAKQALPK-MYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHK 84 (364)
T ss_pred CCHHHHHHHHHHhCCH-HHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHhc
Confidence 6799999999999988 67888888887775 589999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||+++||||+++|++|++|+.+++++|||+++. +++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus 85 l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~-~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~ 163 (364)
T PLN02535 85 LAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSC-NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRL 163 (364)
T ss_pred ccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcC-CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCC
Confidence 99999999999999999999999999999999998764 56899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHH-------------Hh---------hCCCcchhh----hhhccCCHHHHHHHHHHHHHc
Q psy16778 344 GTRYADIRNKFNMPSHLNIEEL-------------AE---------KTPQTTKWF----QLYIYRDREITKSLVQRAEKA 397 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i-------------~~---------~~~~~~~w~----Qly~~~~~~~~~~~~~ra~~~ 397 (433)
|+|++|.|++|..|....+... .. .+|+...|+ .+++..++.++.+.+++|.++
T Consensus 164 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~ 243 (364)
T PLN02535 164 GRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEV 243 (364)
T ss_pred CCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhc
Confidence 9999999999987621111111 00 011111222 245666788999999999999
Q ss_pred CCcEEEEe
Q psy16778 398 GYKALVLT 405 (433)
Q Consensus 398 G~~aivlT 405 (433)
|+++|+|+
T Consensus 244 GvD~I~vs 251 (364)
T PLN02535 244 GVAGIIVS 251 (364)
T ss_pred CCCEEEEe
Confidence 99999885
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1e-42 Score=338.10 Aligned_cols=219 Identities=29% Similarity=0.441 Sum_probs=190.2
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++.+++ ..+.|.+.+++++. |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus 14 ~~i~D~~~~A~~~lp~-~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~ 92 (367)
T TIGR02708 14 INTYDLEEMAQQVIPK-GAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHK 92 (367)
T ss_pred CCHHHHHHHHHHhCCH-HHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHhh
Confidence 6799999999999988 67888888888876 689999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||.++||||+++|++|++|+.++.++|||+++.++++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus 93 l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~ 172 (367)
T TIGR02708 93 LANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVG 172 (367)
T ss_pred ccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999875567899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHH-------------HHHhh-----CCCcchhhh----hhccCCHHHHHHHHHHHHHcCCcE
Q psy16778 344 GTRYADIRNKFNMPSHLNIE-------------ELAEK-----TPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYKA 401 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e-------------~i~~~-----~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~a 401 (433)
|+|++|.|++|..|...+.. .+... +|+...|+. +++..|+..+.+++++|.++|+++
T Consensus 173 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~ 252 (367)
T TIGR02708 173 GNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASG 252 (367)
T ss_pred CcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCE
Confidence 99999999999776332111 11100 111112222 455667888999999999999999
Q ss_pred EEEecC
Q psy16778 402 LVLTVD 407 (433)
Q Consensus 402 ivlTvD 407 (433)
|+||.=
T Consensus 253 I~VS~H 258 (367)
T TIGR02708 253 IWVTNH 258 (367)
T ss_pred EEECCc
Confidence 998753
No 6
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-42 Score=337.02 Aligned_cols=215 Identities=25% Similarity=0.408 Sum_probs=187.5
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++|+ ..+.|.+.+++++. |++||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus 4 ~~i~D~~~~Ar~~Lp~-~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~ 82 (381)
T PRK11197 4 SAASDYRAAAQRRLPP-FLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTG 82 (381)
T ss_pred CCHHHHHHHHHHhCCH-HHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHhh
Confidence 5788999999999988 67888888887775 589999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||+++||||+++|++|++|+.++.++|||+++. +++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus 83 l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 83 MYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred ccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhcc-CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999998774 56899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHHhh-----------------------------------------------CCCcchhh
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELAEK-----------------------------------------------TPQTTKWF 376 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~~~-----------------------------------------------~~~~~~w~ 376 (433)
|+|++|.|++|..|. .++..+.+. +|+...|+
T Consensus 162 G~Rerd~rn~~~~p~-~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPN-AAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCC-chhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 999999999998773 132221110 01112222
Q ss_pred h----hhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 377 Q----LYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 377 Q----ly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
. +++..++.++.+.+++|.++|+++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence 2 3455677889999999999999999987
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=6.7e-42 Score=334.71 Aligned_cols=217 Identities=30% Similarity=0.434 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhc
Q psy16778 187 NEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQ 262 (433)
Q Consensus 187 ~~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~ 262 (433)
-.+++|+...+++++++ ..+.|.+.+++++. |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|++
T Consensus 18 ~~~i~D~~~~Ar~~lp~-~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~ 96 (383)
T cd03332 18 PVDPERLEALAREALSP-GAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQ 96 (383)
T ss_pred cCCHHHHHHHHHHhCCH-HHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHH
Confidence 47899999999999988 56888888887765 58999999999999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecc
Q psy16778 263 KLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV 342 (433)
Q Consensus 263 ~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~ 342 (433)
+++||+||+++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|+++++++++||+++||++|++|||+|+
T Consensus 97 ~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv 176 (383)
T cd03332 97 ELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWS 176 (383)
T ss_pred HhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 99999999999999999999999999999999999987666789999999999999999999999999999999999999
Q ss_pred cCccccccccccCCCcc--chHHHHH-------------------------------h------hCCCcchhhh----hh
Q psy16778 343 FGTRYADIRNKFNMPSH--LNIEELA-------------------------------E------KTPQTTKWFQ----LY 379 (433)
Q Consensus 343 ~G~r~~~~~~~~~~~~~--~s~e~i~-------------------------------~------~~~~~~~w~Q----ly 379 (433)
.|+|++|.|++|. |.. .++..+. + .+|+...|+. ++
T Consensus 177 ~g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~p 255 (383)
T cd03332 177 LGWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLP 255 (383)
T ss_pred CCCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999982 321 1211110 0 0111112222 34
Q ss_pred ccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 380 IYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 380 ~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
+..++.++.+++++|.++|+++|+|+
T Consensus 256 vivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 256 IVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred EEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 56677889999999999999999998
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.9e-41 Score=326.37 Aligned_cols=217 Identities=31% Similarity=0.452 Sum_probs=188.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++++...+++++|+ ..+.|.+.+++++. |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus 6 ~~i~d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (351)
T cd04737 6 INLYDLEAEAKKVIPK-GAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG 84 (351)
T ss_pred CcHHHHHHHHHHhCCH-HHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence 5689999999999988 67899998888775 589999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||+++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|+++++++++||+++||++|++|+|+|+.
T Consensus 85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~ 164 (351)
T cd04737 85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVG 164 (351)
T ss_pred hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999876567899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHH--------------h-----hCCCcchhhh----hhccCCHHHHHHHHHHHHHcCCc
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELA--------------E-----KTPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYK 400 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~--------------~-----~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~ 400 (433)
|+|++|.|++|..|...+..... . .+|+...|+. +++..|+.++.+++++|.++|++
T Consensus 165 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d 244 (351)
T cd04737 165 GNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGAD 244 (351)
T ss_pred CcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCC
Confidence 99999999999877322211111 0 0111111222 34556677889999999999999
Q ss_pred EEEEe
Q psy16778 401 ALVLT 405 (433)
Q Consensus 401 aivlT 405 (433)
+|+|+
T Consensus 245 ~I~vs 249 (351)
T cd04737 245 GIWVS 249 (351)
T ss_pred EEEEe
Confidence 99997
No 9
>PLN02979 glycolate oxidase
Probab=100.00 E-value=1.2e-39 Score=313.07 Aligned_cols=179 Identities=38% Similarity=0.656 Sum_probs=159.0
Q ss_pred ceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCc
Q psy16778 226 LRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTT 305 (433)
Q Consensus 226 ~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~ 305 (433)
|+|+||+|+|++++||+|++||+++++||+|||+|+++++||+||.++||||+++|++|++|+.++.++|||+++. +++
T Consensus 44 ~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~-~~~ 122 (366)
T PLN02979 44 CDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGI 122 (366)
T ss_pred eEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhcc-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999874 568
Q ss_pred ceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHh------------------
Q psy16778 306 KWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAE------------------ 367 (433)
Q Consensus 306 ~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~------------------ 367 (433)
.|||+|+++|+++++++++||+++||+++++|||+|+.|+|++|.|++|.+|...++..+..
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999998875544443311
Q ss_pred -------hCCCcchhhh----hhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 368 -------KTPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 368 -------~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
.+|+...|++ +++..|+.++.+++++|.++|+++|+|+
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence 1122223433 4566788999999999999999999885
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.8e-38 Score=308.72 Aligned_cols=213 Identities=33% Similarity=0.434 Sum_probs=184.0
Q ss_pred HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778 192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE 267 (433)
Q Consensus 192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~ 267 (433)
|+...+++++|+ ..+.|.+.+++++. |++||++|+|+||+|++++++||+|++||+++++||+|||+|+++++||
T Consensus 2 d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 2 DFEAAAKKYLSK-KAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred hHHHHHHHhCCH-HHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 567788888888 67888888888775 5899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCCceEEecCCCCCHHHHHHh-CCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCcc
Q psy16778 268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEK-TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTR 346 (433)
Q Consensus 268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~-~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r 346 (433)
+||+++||||.++|++|++|+.++.++|||+++ .++.+.|||+|.++|++.+++++++|+++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999999877 4557899999999999999999999999999999999999999999
Q ss_pred ccccccccCCCccchHHHH-------------HhhCCCcchh---------hhhhccCCHHHHHHHHHHHHHcCCcEEEE
Q psy16778 347 YADIRNKFNMPSHLNIEEL-------------AEKTPQTTKW---------FQLYIYRDREITKSLVQRAEKAGYKALVL 404 (433)
Q Consensus 347 ~~~~~~~~~~~~~~s~e~i-------------~~~~~~~~~w---------~Qly~~~~~~~~~~~~~ra~~~G~~aivl 404 (433)
++|.|++|..|...+..+. .........| +.+++..++..+.+.+++|.++|+++|+|
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence 9999999987653333220 0000001112 23455667778899999999999999999
Q ss_pred e
Q psy16778 405 T 405 (433)
Q Consensus 405 T 405 (433)
+
T Consensus 241 s 241 (344)
T cd02922 241 S 241 (344)
T ss_pred E
Confidence 7
No 11
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=4.4e-36 Score=294.03 Aligned_cols=199 Identities=35% Similarity=0.509 Sum_probs=166.1
Q ss_pred CCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcC
Q psy16778 206 PPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281 (433)
Q Consensus 206 ~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g 281 (433)
.+.|.+..++++. |+.+|++|+|+||+|++++++||+|+|||+++++||+|||+|+++++||+||.++|++|.++|
T Consensus 9 ~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G 88 (356)
T PF01070_consen 9 VFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG 88 (356)
T ss_dssp HHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC
Confidence 3556666666664 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch
Q psy16778 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN 361 (433)
Q Consensus 282 ~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s 361 (433)
++|++|+.++.++|+|+++.. ++.|||+|.+.|++.+.++++||+++||+++++|+|++..|+|++|.|++|.+|..++
T Consensus 89 i~~~lss~s~~~~e~ia~~~~-~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~ 167 (356)
T PF01070_consen 89 IPMMLSSQSSASLEEIAAASG-GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLS 167 (356)
T ss_dssp SEEEEETTCSSCHHHHHHHCT-SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHC
T ss_pred cceeccCCccCCHHHHHhhcc-CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccc
Confidence 999999999999999998865 7899999999999999999999999999999999999999999999999998776543
Q ss_pred HHHHHhh---------------------------------CCCcchhhh---------hhccCCHHHHHHHHHHHHHcCC
Q psy16778 362 IEELAEK---------------------------------TPQTTKWFQ---------LYIYRDREITKSLVQRAEKAGY 399 (433)
Q Consensus 362 ~e~i~~~---------------------------------~~~~~~w~Q---------ly~~~~~~~~~~~~~ra~~~G~ 399 (433)
+..+.+. ......|-. +++..|+.++.+++++|.++|+
T Consensus 168 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~ 247 (356)
T PF01070_consen 168 PRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGV 247 (356)
T ss_dssp TTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-
T ss_pred cccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCC
Confidence 2222110 011122322 4567788899999999999999
Q ss_pred cEEEEe
Q psy16778 400 KALVLT 405 (433)
Q Consensus 400 ~aivlT 405 (433)
++|+|+
T Consensus 248 ~~i~vs 253 (356)
T PF01070_consen 248 DGIDVS 253 (356)
T ss_dssp SEEEEE
T ss_pred CEEEec
Confidence 999997
No 12
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=184.66 Aligned_cols=158 Identities=52% Similarity=0.897 Sum_probs=147.9
Q ss_pred EcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHH
Q psy16778 44 MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRN 123 (433)
Q Consensus 44 ~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~ 123 (433)
+|.+||||||+++.|++++|+.|+++|+++.+.++.++..|++.++++.++|++.+...+......+..+||.|+.+.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~ 80 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS 80 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999998888887899999999999
Q ss_pred HHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 124 YRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 124 ~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
||+.|++..+ ...|||+.+.+++.+|+.+|.+++++.+++..|++.+++|.. +...+.|+.+.++++++.++...+.
T Consensus 81 YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~--de~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 81 YRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPGA--DEDVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred HHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCC--CCCEEEeeCCCCHHHHHHHHHHHHh
Confidence 9999999876 889999999999999999999999999999999999999984 3389999999999999999887654
Q ss_pred C
Q psy16778 203 T 203 (433)
Q Consensus 203 ~ 203 (433)
.
T Consensus 159 ~ 159 (161)
T COG3265 159 E 159 (161)
T ss_pred c
Confidence 3
No 13
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.92 E-value=6.6e-26 Score=220.50 Aligned_cols=204 Identities=31% Similarity=0.397 Sum_probs=166.3
Q ss_pred HHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchH
Q psy16778 196 KSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEI 271 (433)
Q Consensus 196 ~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~ 271 (433)
..+..++ ..+.|.+..+.++. |..+|++|.|+||+|.+++++|++|++||+++++||+|+|+++++++|++||.
T Consensus 7 ~a~~~~~--~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~ 84 (360)
T COG1304 7 AAQRRLP--KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEV 84 (360)
T ss_pred HHhhhcc--hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccChhhHH
Confidence 3444444 24566666666544 35799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccc
Q psy16778 272 GNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 351 (433)
Q Consensus 272 ~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~ 351 (433)
..+++|..+|+++++|+.+++++|++.+..+ ||+|+..|++++.+++++|+++||+++++|+|+++.|+|++|.+
T Consensus 85 ~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~-----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~ 159 (360)
T COG1304 85 INAKLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV 159 (360)
T ss_pred HHHHHHHHcCCCeeeeccccCcHHHhhcCcc-----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHH
Confidence 9999999999999999999999999987643 99999999999999999999999999999999999999999999
Q ss_pred cccCCCccchH-----------------------HHHHhh------CCCcchhhh----hhccCCHHHHHHHHHHHHHcC
Q psy16778 352 NKFNMPSHLNI-----------------------EELAEK------TPQTTKWFQ----LYIYRDREITKSLVQRAEKAG 398 (433)
Q Consensus 352 ~~~~~~~~~s~-----------------------e~i~~~------~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G 398 (433)
+++..|+...+ .++... +++...|+. ..+..++.++.++++.|...|
T Consensus 160 ~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg 239 (360)
T COG1304 160 NGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTG 239 (360)
T ss_pred hccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCC
Confidence 88876532211 222211 111122322 234556788889999999999
Q ss_pred CcEEEEec
Q psy16778 399 YKALVLTV 406 (433)
Q Consensus 399 ~~aivlTv 406 (433)
+.+|+++=
T Consensus 240 ~~~I~vsn 247 (360)
T COG1304 240 ADGIEVSN 247 (360)
T ss_pred ceEEEEEc
Confidence 99999973
No 14
>KOG3354|consensus
Probab=99.91 E-value=1.5e-23 Score=174.82 Aligned_cols=164 Identities=54% Similarity=0.837 Sum_probs=149.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
-+..|+++|.+||||||+++.|++++|+.|+|+|+++.+.+...+..|++.++.++++|+..+...+...+..+..+|+.
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlA 90 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLA 90 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 34589999999999999999999999999999999999988889999999999999999999999998888899999999
Q ss_pred cCcccHHHHHHHHh--------cCC---eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778 117 CSALRRNYRDIIRN--------NNR---VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVS 185 (433)
Q Consensus 117 ~~~~~~~~~~~l~~--------~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id 185 (433)
|+.+.+.||+.|+. ..+ +.+|||.++.+++.+|+.+|.+++.+.+.++.|++.++.+.. .+.+.+.|+
T Consensus 91 CSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~~-~e~div~is 169 (191)
T KOG3354|consen 91 CSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPDA-DEEDIVTIS 169 (191)
T ss_pred hHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCCC-CccceEEEe
Confidence 99999999999987 222 789999999999999999999999999999999999999876 444778888
Q ss_pred cC-CCHHHHHHHHhcCC
Q psy16778 186 VN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 186 ~~-~~~ee~~~~i~~~l 201 (433)
.. .+++++++.|.+.+
T Consensus 170 v~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 170 VKTYSVEEIVDTIVKMV 186 (191)
T ss_pred eccCCHHHHHHHHHHHH
Confidence 87 99999999887654
No 15
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.87 E-value=9.3e-22 Score=190.20 Aligned_cols=195 Identities=41% Similarity=0.593 Sum_probs=162.0
Q ss_pred HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778 192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE 267 (433)
Q Consensus 192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~ 267 (433)
++...+++.++. ..+.|....+.++. |..+|++|+|+||+|.+++++|+++++||++++.||+++|+++.++.||
T Consensus 2 ~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 2 DLRALARRRLPK-AVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred hHHHHHHHhCCH-HHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 345566677766 45666666665554 5789999999999999999999999999999999999999999998999
Q ss_pred cchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccc
Q psy16778 268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY 347 (433)
Q Consensus 268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~ 347 (433)
+++..++++|.+.|+++++++.++.++|++.+..+ .+.|+|+|...|.+.+.++++++++.|+++|.+++|.|..|.|.
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~ 159 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRL 159 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcC-CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Confidence 99999999999999999999988999999987765 78999999988888888999999999999999999999877661
Q ss_pred cccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 348 ADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 348 ~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
....++.+.+.++ +++.-+...+.+.+++|.++|+++|+++
T Consensus 160 ----------~~~~i~~l~~~~~-------~pvivK~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 160 ----------TWDDLAWLRSQWK-------GPLILKGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred ----------CHHHHHHHHHhcC-------CCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence 1123444444433 2333344578899999999999999997
No 16
>KOG0538|consensus
Probab=99.85 E-value=3.5e-22 Score=183.23 Aligned_cols=142 Identities=34% Similarity=0.525 Sum_probs=118.7
Q ss_pred CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778 290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------- 349 (433)
Q Consensus 290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------- 349 (433)
+..++|+.|...++...|-|++..++++.|.+.+..|.+. -++..++ ++.|.++|++..-
T Consensus 3 ~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma 82 (363)
T KOG0538|consen 3 NVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMA 82 (363)
T ss_pred cHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHhcc
Confidence 4568999998887778999999999999999999988655 5555444 4568899997751
Q ss_pred ----------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778 350 ----------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413 (433)
Q Consensus 350 ----------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~ 413 (433)
.+...++ -+++|+|||.+++|....|||||+.+|+..++++++||+++||||||||||+|+.|+
T Consensus 83 ~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~ 162 (363)
T KOG0538|consen 83 HPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGR 162 (363)
T ss_pred CCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccC
Confidence 1111111 257799999999988899999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCCCCCCC
Q psy16778 414 RYADIRNKFNMPSHLKED 431 (433)
Q Consensus 414 r~~~~r~~~~~~~~~~~~ 431 (433)
|+.|+||+|.+|..+++-
T Consensus 163 R~~D~~n~f~lp~~l~lk 180 (363)
T KOG0538|consen 163 RESDIKNKFSLPKNLTLK 180 (363)
T ss_pred chhhhhhcccCCcccccc
Confidence 999999999999876653
No 17
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.3e-21 Score=168.27 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=122.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEc
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVC 117 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~ 117 (433)
++.|+|+|++||||||+++.||+.|+.+|+|+|.+++... ++.....|.. .++..|+..|..+...+....+.||+.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~--g~sI~eIF~~-~GE~~FR~~E~~vl~~l~~~~~~ViaT 78 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT--GMSIAEIFEE-EGEEGFRRLETEVLKELLEEDNAVIAT 78 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH--CcCHHHHHHH-HhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 4789999999999999999999999999999999986532 2333344443 456667766665544444444688887
Q ss_pred Cc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeEEEccCCC
Q psy16778 118 SA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVRTVSVNEP 189 (433)
Q Consensus 118 ~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~ 189 (433)
|+ ..++.+..|++.+ .+|||++|++++++|+.....+|. +.+.+.+.++.+.++| ++.++++++++..
T Consensus 79 GGG~v~~~enr~~l~~~g--~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y--~e~a~~~~~~~~~ 154 (172)
T COG0703 79 GGGAVLSEENRNLLKKRG--IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLY--REVADFIIDTDDR 154 (172)
T ss_pred CCccccCHHHHHHHHhCC--eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHH--HHhCcEEecCCCC
Confidence 76 6688999999986 899999999999999985444443 2356888888888888 7789999999955
Q ss_pred HHHHHHHHhcCCCC
Q psy16778 190 LEGIVSKSAIMPPT 203 (433)
Q Consensus 190 ~ee~~~~i~~~l~~ 203 (433)
.++++++|...+..
T Consensus 155 ~~~v~~~i~~~l~~ 168 (172)
T COG0703 155 SEEVVEEILEALEG 168 (172)
T ss_pred cHHHHHHHHHHHHH
Confidence 58898888877644
No 18
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.80 E-value=3.7e-20 Score=180.35 Aligned_cols=139 Identities=29% Similarity=0.467 Sum_probs=117.1
Q ss_pred CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778 290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------- 349 (433)
Q Consensus 290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------- 349 (433)
+..+||++|+...+...|-|+...+++|.+...|+.|... .+...++ ++.+.++|++...
T Consensus 5 ~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~ 84 (367)
T PLN02493 5 NVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMA 84 (367)
T ss_pred CHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHHhhc
Confidence 4568999999888888999999999999999999999765 7777777 4558889987651
Q ss_pred ----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778 350 ----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413 (433)
Q Consensus 350 ----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~ 413 (433)
.+...+ ..+++|+|+|+++.+ .++|||+|+++|+..+.++++||+++||++||||||+|+.|+
T Consensus 85 hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~-~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~ 163 (367)
T PLN02493 85 HPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGR 163 (367)
T ss_pred CCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCC-CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCc
Confidence 112222 236779999998744 578999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCCCCC
Q psy16778 414 RYADIRNKFNMPSHLK 429 (433)
Q Consensus 414 r~~~~r~~~~~~~~~~ 429 (433)
||+|.||+|.+|+++.
T Consensus 164 R~~d~r~~~~~p~~~~ 179 (367)
T PLN02493 164 RESDIKNRFTLPPNLT 179 (367)
T ss_pred chhhhcccCCCCcccc
Confidence 9999999999997654
No 19
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.80 E-value=5.9e-20 Score=178.77 Aligned_cols=135 Identities=30% Similarity=0.421 Sum_probs=114.1
Q ss_pred CHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc----------------
Q psy16778 293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD---------------- 349 (433)
Q Consensus 293 ~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~---------------- 349 (433)
+||++|+...+...|-|+...+++|.+...|+.|... .+...++ ++.++++|++...
T Consensus 2 D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~ 81 (361)
T cd04736 2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPN 81 (361)
T ss_pred hHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCCc
Confidence 6899999888888999999999999999999999765 7777777 3558899998861
Q ss_pred -------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCchh
Q psy16778 350 -------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA 416 (433)
Q Consensus 350 -------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~r~~ 416 (433)
.+...+ ..+++|+|||+++.+ ++.|||||+. |+.++.++++||+++||++||||||+|+.|+||+
T Consensus 82 gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~-~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 82 GDLALARAAAKAGIPFVLSTASNMSIEDVARQAD-GDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred HHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcC-CCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 122222 236789999998764 5789999996 6999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCC
Q psy16778 417 DIRNKFNMPSHLK 429 (433)
Q Consensus 417 ~~r~~~~~~~~~~ 429 (433)
|.||+|.+|++++
T Consensus 160 d~r~~~~~p~~~~ 172 (361)
T cd04736 160 DLRNGFAIPFRYT 172 (361)
T ss_pred hhhcCCCCCcccc
Confidence 9999999997654
No 20
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.79 E-value=4.8e-18 Score=149.96 Aligned_cols=160 Identities=53% Similarity=0.893 Sum_probs=125.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcc
Q psy16778 41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSAL 120 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~ 120 (433)
|+|+|++||||||+++.|++.+|..++++|++...........+..+++.....+++.+.+.+...+..+..+||+++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~ 80 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL 80 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 57999999999999999999999999999998643222222335555555666777777777777777777789999988
Q ss_pred cHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778 121 RRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI 199 (433)
Q Consensus 121 ~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~ 199 (433)
.+.+++.+++... +.++||++|++++.+|+.+|.++..+.+.+..++..++.+.. .+...++||++.+++++.++|..
T Consensus 81 ~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~-~e~~~~~id~~~~~~~~~~~~~~ 159 (163)
T TIGR01313 81 KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLA-DETDVLRVDIDQPLEGVEEDCIA 159 (163)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCC-CCCceEEEECCCCHHHHHHHHHH
Confidence 8888888886654 678999999999999999997655567788888887777643 33467899999999999988866
Q ss_pred CC
Q psy16778 200 MP 201 (433)
Q Consensus 200 ~l 201 (433)
.+
T Consensus 160 ~~ 161 (163)
T TIGR01313 160 VV 161 (163)
T ss_pred HH
Confidence 53
No 21
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.78 E-value=1.1e-19 Score=178.10 Aligned_cols=136 Identities=26% Similarity=0.363 Sum_probs=114.9
Q ss_pred CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778 290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------- 349 (433)
Q Consensus 290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------- 349 (433)
+..++|++|+...+...|-|+..++++|.+...|+.|.+. .+...++ ++.+.++|++..-
T Consensus 5 ~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~ 84 (381)
T PRK11197 5 AASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMY 84 (381)
T ss_pred CHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHhhcc
Confidence 4568999999888888999999999999999999999765 7777777 3558889987761
Q ss_pred ----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778 350 ----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413 (433)
Q Consensus 350 ----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~ 413 (433)
.+...+ ..++.|+|||.+..+ .+.|||+|+++|+..+.++++||+++||++||||||+|+.|+
T Consensus 85 hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~-~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~ 163 (381)
T PRK11197 85 ARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIK-RPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGA 163 (381)
T ss_pred CCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccC-CCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Confidence 111112 236779999988754 579999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCC
Q psy16778 414 RYADIRNKFNMPS 426 (433)
Q Consensus 414 r~~~~r~~~~~~~ 426 (433)
||+|.||+|++|+
T Consensus 164 Rerd~rn~~~~p~ 176 (381)
T PRK11197 164 RYRDAHSGMSGPN 176 (381)
T ss_pred ChhhhhcCCCCCC
Confidence 9999999999884
No 22
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.78 E-value=7.7e-18 Score=150.19 Aligned_cols=166 Identities=46% Similarity=0.814 Sum_probs=134.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
.|++++|+|+|||||||+++.|++.++..++++|++...........|+++++.....+...+.+.+......+...+|.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv 81 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV 81 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence 47899999999999999999999999999999999865443444456888888777778888777776554433334455
Q ss_pred cCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHH
Q psy16778 117 CSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS 195 (433)
Q Consensus 117 ~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~ 195 (433)
+++....+++.+++... +.+|||+++++++.+|+.+|.++..+.+.+..|+..++++.. .+...+.||++.+++++..
T Consensus 82 ~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~-~e~~~~~~d~~~~~~~~~~ 160 (176)
T PRK09825 82 CSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCA-DEHDIARIDVNHDIENVTE 160 (176)
T ss_pred EEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCC-CcCCeEEEECCCCHHHHHH
Confidence 88889999999988765 789999999999999999998777788899999998887654 4456889999988888888
Q ss_pred HHhcCCCC
Q psy16778 196 KSAIMPPT 203 (433)
Q Consensus 196 ~i~~~l~~ 203 (433)
.+...+..
T Consensus 161 ~~~~~~~~ 168 (176)
T PRK09825 161 QCRQAVQA 168 (176)
T ss_pred HHHHHHHH
Confidence 87776643
No 23
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.78 E-value=2e-19 Score=175.46 Aligned_cols=141 Identities=26% Similarity=0.375 Sum_probs=117.6
Q ss_pred cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------- 349 (433)
Q Consensus 288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------- 349 (433)
..+..++|++|+...+...|-|+...+++|.+...|+.|... .+...++ ++.+.++|++...
T Consensus 13 ~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~ 92 (367)
T TIGR02708 13 FINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHK 92 (367)
T ss_pred CCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHhh
Confidence 345678999999888888999999999999999999999755 7777777 3557888887651
Q ss_pred ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778 350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 411 (433)
Q Consensus 350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~ 411 (433)
.+...+ ..++.|+|+|.++.++.+.|||+|+.+|+.++.++++||+++||+|||||||+|+.
T Consensus 93 l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~ 172 (367)
T TIGR02708 93 LANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVG 172 (367)
T ss_pred ccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 111112 23678999999875456799999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCCCCC
Q psy16778 412 GTRYADIRNKFNMPSHL 428 (433)
Q Consensus 412 g~r~~~~r~~~~~~~~~ 428 (433)
|+||+|.||+|.+|..+
T Consensus 173 g~R~~d~r~~~~~p~~~ 189 (367)
T TIGR02708 173 GNREVDVRNGFVFPVGM 189 (367)
T ss_pred CcchhhhhcCCCCCCcc
Confidence 99999999999988543
No 24
>PLN02535 glycolate oxidase
Probab=99.78 E-value=1.5e-19 Score=176.41 Aligned_cols=137 Identities=31% Similarity=0.444 Sum_probs=115.5
Q ss_pred cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------- 349 (433)
Q Consensus 288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------- 349 (433)
..+..++|+.|+...+...|-|+..++++|.+...|+.|... .+...++ ++.+.++|++..-
T Consensus 5 ~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (364)
T PLN02535 5 IVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHK 84 (364)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHhc
Confidence 445678999998888888999999999999999999999765 7777777 3558888987651
Q ss_pred ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778 350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 411 (433)
Q Consensus 350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~ 411 (433)
.+...+ ..+++|+|||.+..+ .+.|||+|+++|+.++.++++||+++||++||||||+|+.
T Consensus 85 l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~-~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~ 163 (364)
T PLN02535 85 LAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCN-AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRL 163 (364)
T ss_pred ccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCC-CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCC
Confidence 111112 236789999988643 5799999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCC
Q psy16778 412 GTRYADIRNKFNMP 425 (433)
Q Consensus 412 g~r~~~~r~~~~~~ 425 (433)
|+||+|.||+|.+|
T Consensus 164 g~R~~d~r~~~~~p 177 (364)
T PLN02535 164 GRREADIKNKMISP 177 (364)
T ss_pred CCchhhhhcCCCCc
Confidence 99999999999988
No 25
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.77 E-value=5.5e-19 Score=173.53 Aligned_cols=137 Identities=28% Similarity=0.429 Sum_probs=114.5
Q ss_pred cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------- 349 (433)
Q Consensus 288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------- 349 (433)
..+..+||++|+...+...|-|+..+.++|.+...|+.|.+. -+...++ ++.+.++|+...-
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 456778999998887778899999999999999999999766 7777777 3558888887751
Q ss_pred ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778 350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 411 (433)
Q Consensus 350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~ 411 (433)
.+...+ ..+++|+|||.+..++++.|||||+++|+..+.++++||+++||++||||||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 111111 23678999999875556899999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCC
Q psy16778 412 GTRYADIRNKFNMP 425 (433)
Q Consensus 412 g~r~~~~r~~~~~~ 425 (433)
|+||+|.|++| .|
T Consensus 178 g~Rerd~r~~~-~p 190 (383)
T cd03332 178 GWRPRDLDLGY-LP 190 (383)
T ss_pred CCchhhhhcCC-CC
Confidence 99999999999 45
No 26
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.76 E-value=2.6e-17 Score=145.09 Aligned_cols=158 Identities=46% Similarity=0.853 Sum_probs=126.4
Q ss_pred EcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHH
Q psy16778 44 MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRN 123 (433)
Q Consensus 44 ~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~ 123 (433)
+|+|||||||+++.|++.+|..++++|.+...........|+++++.....+...+.+........+...||.+++....
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~~~ 80 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH 80 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecchHH
Confidence 59999999999999999999999999987543333334558888887777888888887776555544445558888899
Q ss_pred HHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 124 YRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 124 ~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+++.+++... +..|||+++.+++.+|+.+|.++....+.+..|+..++++.. .+...++||+..++++++..+...+.
T Consensus 81 ~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~-~e~~~~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 81 YRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred HHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCC-CCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999988655 889999999999999999998766678888999988887754 22456888888888998888877653
No 27
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.75 E-value=1.1e-18 Score=170.04 Aligned_cols=141 Identities=32% Similarity=0.403 Sum_probs=117.7
Q ss_pred cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------- 349 (433)
Q Consensus 288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------- 349 (433)
..+..+||++|....+...|.|+....++|.+...|+.|.+. .+...++ ++.+.++|++..-
T Consensus 5 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~ 84 (351)
T cd04737 5 IINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG 84 (351)
T ss_pred cCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence 345678999999888888999999999999999999999765 7777777 3457888887751
Q ss_pred ------------ccccc------CCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778 350 ------------IRNKF------NMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 411 (433)
Q Consensus 350 ------------~~~~~------~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~ 411 (433)
.+... +..+++|+|||.++.+++..|||+|+++|+..+.++++||+++||++|+||||+|+.
T Consensus 85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~ 164 (351)
T cd04737 85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVG 164 (351)
T ss_pred hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 11111 223678999999876556899999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCCCCC
Q psy16778 412 GTRYADIRNKFNMPSHL 428 (433)
Q Consensus 412 g~r~~~~r~~~~~~~~~ 428 (433)
|+|++|+|++|.+|.++
T Consensus 165 g~R~~d~r~~~~~p~~~ 181 (351)
T cd04737 165 GNREADIRNKFQFPFGM 181 (351)
T ss_pred CcchHHHHhcCCCCccc
Confidence 99999999999999644
No 28
>PRK13948 shikimate kinase; Provisional
Probab=99.75 E-value=9.7e-18 Score=149.73 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=114.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
..+..|+|+|++||||||+++.|++++|+.++|+|.+++... ++.....|+. .++..|+..+..+...+....+.||
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~--g~si~~if~~-~Ge~~fR~~E~~~l~~l~~~~~~VI 84 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT--GKSIPEIFRH-LGEAYFRRCEAEVVRRLTRLDYAVI 84 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH--hCCHHHHHHH-hCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 355899999999999999999999999999999998875422 1111222332 3456666666554443333346788
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~ 187 (433)
++|+ ..+.+++.+++.+ .+|||+++++++.+|+..+ ++|.. .+.+...++.+++.| .. ++++|+++
T Consensus 85 a~GgG~v~~~~n~~~l~~~g--~vV~L~~~~e~l~~Rl~~~-~RPll~~~~~~~~l~~l~~~R~~~Y--~~-a~~~i~t~ 158 (182)
T PRK13948 85 SLGGGTFMHEENRRKLLSRG--PVVVLWASPETIYERTRPG-DRPLLQVEDPLGRIRTLLNEREPVY--RQ-ATIHVSTD 158 (182)
T ss_pred ECCCcEEcCHHHHHHHHcCC--eEEEEECCHHHHHHHhcCC-CCCCCCCCChHHHHHHHHHHHHHHH--Hh-CCEEEECC
Confidence 8765 4567888888774 8999999999999999543 33321 346677777777776 33 78999988
Q ss_pred -CCHHHHHHHHhcCCCC
Q psy16778 188 -EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 188 -~~~ee~~~~i~~~l~~ 203 (433)
.+++++++.|.+.+..
T Consensus 159 ~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 159 GRRSEEVVEEIVEKLWA 175 (182)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 8999999998877643
No 29
>PLN02979 glycolate oxidase
Probab=99.74 E-value=2.6e-18 Score=165.88 Aligned_cols=99 Identities=38% Similarity=0.649 Sum_probs=89.3
Q ss_pred EEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHH
Q psy16778 309 QLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITK 388 (433)
Q Consensus 309 qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~ 388 (433)
|-..+.|.|. .+.+.|.++|...++.|+ ++.|+|+|++..+ .+.|||+|+++|+..+.
T Consensus 80 ~~l~hpdgE~--a~ARAA~~agi~~~lSt~-------------------ss~slEeIa~a~~-~~~wfQLY~~~Dr~~~~ 137 (366)
T PLN02979 80 QKMAHPDGEY--ATARAASAAGTIMTLSSW-------------------ATSSVEEVASTGP-GIRFFQLYVYKNRNVVE 137 (366)
T ss_pred HhhCCCChHH--HHHHHHHHcCCCeeeccC-------------------cCCCHHHHHhccC-CCeEEEEeecCCHHHHH
Confidence 3444788888 689999999999999998 7899999998754 57999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCchhhhhcCCCCCCCCC
Q psy16778 389 SLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLK 429 (433)
Q Consensus 389 ~~~~ra~~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~~~~ 429 (433)
++++||+++||++||||||+|+.|+||+|.||+|++|++++
T Consensus 138 ~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~ 178 (366)
T PLN02979 138 QLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLT 178 (366)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccc
Confidence 99999999999999999999999999999999999997654
No 30
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.73 E-value=5.4e-17 Score=144.35 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=113.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
.+.+.|+|+|++||||||+++.|++.+|++++++|....... +......++.. ++..|+..+..+...+.....+|+
T Consensus 2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~~-g~~~fr~~e~~~l~~l~~~~~~vi 78 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDVE-GEEGFRDREEKVINELTEKQGIVL 78 (172)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHHh-CHHHHHHHHHHHHHHHHhCCCEEE
Confidence 456789999999999999999999999999999998754321 11122223322 334444444443333333456788
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~ 187 (433)
++++ ..+..+..+++.+ .+|||++|.+++.+|+..+..+|.. .+.++..+..+.+.| ++.++++|+++
T Consensus 79 ~~ggg~v~~~~~~~~l~~~~--~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y--~~~Ad~~idt~ 154 (172)
T PRK05057 79 ATGGGSVKSRETRNRLSARG--VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLY--EEIADVTIRTD 154 (172)
T ss_pred EcCCchhCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HhhCCEEEECC
Confidence 7765 3457778888775 8999999999999999876555432 345666777777766 56688999998
Q ss_pred -CCHHHHHHHHhcCC
Q psy16778 188 -EPLEGIVSKSAIMP 201 (433)
Q Consensus 188 -~~~ee~~~~i~~~l 201 (433)
.+++++++.|.+.+
T Consensus 155 ~~s~~ei~~~i~~~l 169 (172)
T PRK05057 155 DQSAKVVANQIIHML 169 (172)
T ss_pred CCCHHHHHHHHHHHH
Confidence 99999999987765
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.70 E-value=1.4e-16 Score=141.27 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
+.|+|+|++||||||+++.|++.+|++++|+|.+.+... +......++. .++..++.++..+...+....++||++|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~--~~~~~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~vis~G 78 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF--HKTVGDIFAE-RGEAVFRELERNMLHEVAEFEDVVISTG 78 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH--CccHHHHHHH-hCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 469999999999999999999999999999998764321 1122222332 3344555555544443443346888776
Q ss_pred cc---cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh-CCCCC-----H---HhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 119 AL---RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA-EHFMP-----A---DLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 119 ~~---~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~-~~~~~-----~---~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
+. .....+.+++.+ ++|||++|++++.+|+..++ ++|.. . +.+...+..+.+.| ++ ++++|++
T Consensus 79 gg~~~~~~~~~~l~~~~--~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y--~~-ad~~id~ 153 (169)
T PRK13949 79 GGAPCFFDNMELMNASG--TTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFY--RQ-AKIIFNA 153 (169)
T ss_pred CcccCCHHHHHHHHhCC--eEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--Hh-CCEEEEC
Confidence 63 355677887774 89999999999999997532 34331 1 13455677777776 44 6699999
Q ss_pred C-CCHHHHHHHHhcCC
Q psy16778 187 N-EPLEGIVSKSAIMP 201 (433)
Q Consensus 187 ~-~~~ee~~~~i~~~l 201 (433)
+ .+++++++.|.+.+
T Consensus 154 ~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 154 DKLEDESQIEQLVQRL 169 (169)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 8 89999999987653
No 32
>PRK13946 shikimate kinase; Provisional
Probab=99.69 E-value=1.2e-16 Score=143.78 Aligned_cols=155 Identities=25% Similarity=0.370 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHH-HHHhhhCCCc
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRI-IHQLNVDNLT 112 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~ 112 (433)
.++.|+|+|++||||||+++.|++++|++++|+|.+.... .+..+.+ ..++.+++..+.. +..+...+ .
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~------~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~-~ 81 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERA------ARMTIAEIFAAYGEPEFRDLERRVIARLLKGG-P 81 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcC-C
Confidence 4568999999999999999999999999999999864321 1222211 2334555555444 44444444 6
Q ss_pred EEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 113 GVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 113 ~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
+||++++ ..+..++.+++.. ++|||++|++++.+|+.+|.+++. ..+.++.+++.+++.| .. ++++|
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~~~--~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y--~~-~dl~i 156 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAEKG--ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVY--AE-ADLTV 156 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--Hh-CCEEE
Confidence 7777753 5677888887764 899999999999999998876542 2455667777776654 33 56888
Q ss_pred ccC-CCHHHHHHHHhcCCCC
Q psy16778 185 SVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 185 d~~-~~~ee~~~~i~~~l~~ 203 (433)
+++ .+++++++.|.+.+..
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 157 ASRDVPKEVMADEVIEALAA 176 (184)
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 877 9999999988777654
No 33
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.8e-16 Score=134.95 Aligned_cols=158 Identities=22% Similarity=0.312 Sum_probs=118.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
...++.+||+||.|||||||+|..|.++| | ..++|+|+++. ++..+..|+.++.....+++.++++.+..
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~-----gL~~dLgFs~edR~eniRRvaevAkll~d 93 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH-----GLNRDLGFSREDRIENIRRVAEVAKLLAD 93 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh-----cccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998 4 45799999863 44568888888888888999999988888
Q ss_pred CCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCCC
Q psy16778 109 DNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVEP 179 (433)
Q Consensus 109 ~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (433)
+|-.++++.-...+..|+..++..+ ++.||++||.+++.+|- ++|.+...... -.+.+|..-+.
T Consensus 94 aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fT-------Gid~pYE~P~~ 166 (197)
T COG0529 94 AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFT-------GIDSPYEAPEN 166 (197)
T ss_pred CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCc-------CCCCCCCCCCC
Confidence 8865555555566677777776543 89999999999999884 22333222111 12223321223
Q ss_pred CeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778 180 DVRTVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 180 ~~~~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
.++.++++ .++++.+++|.+.+..
T Consensus 167 Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 167 PELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CeeEeccccCCHHHHHHHHHHHHHh
Confidence 77999998 9999999999888754
No 34
>PLN02199 shikimate kinase
Probab=99.67 E-value=2.5e-16 Score=148.25 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=114.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
++..|+|+|++||||||+++.|++.+|++++|+|.+++... .+......|. ..++..|+..|..+...+....++||+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~-~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~~VIS 178 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM-NGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQVVVS 178 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh-cCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 57899999999999999999999999999999999875421 0111122233 345566666666555444444578998
Q ss_pred cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH--hhCCCCC-----------HHhHHHHHhhccCCCCCCCCC
Q psy16778 117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK--RAEHFMP-----------ADLLESQFQTLEEPDPLVEPD 180 (433)
Q Consensus 117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~--R~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~ 180 (433)
+++ ..+..+..++. + .+|||++|++++.+|+.. ...+|.- .+.+...++.+.+.| ++ +
T Consensus 179 tGGG~V~~~~n~~~L~~-G--~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY--~~-A 252 (303)
T PLN02199 179 TGGGAVIRPINWKYMHK-G--ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAY--TN-A 252 (303)
T ss_pred CCCcccCCHHHHHHHhC-C--eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHH--Hh-C
Confidence 877 55667777764 3 899999999999999985 2223221 245677788888887 44 7
Q ss_pred eEEEc------------cC-CCHHHHHHHHhcCCCC
Q psy16778 181 VRTVS------------VN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 181 ~~~Id------------~~-~~~ee~~~~i~~~l~~ 203 (433)
+++|+ ++ .++++++.+|...+.+
T Consensus 253 d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~ 288 (303)
T PLN02199 253 NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLS 288 (303)
T ss_pred CEEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 88888 66 8999999888776643
No 35
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.67 E-value=2.4e-15 Score=130.72 Aligned_cols=145 Identities=52% Similarity=0.827 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh-hCCCcEEEEcC
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN-VDNLTGVLVCS 118 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Vi~~~ 118 (433)
+|+|+|++||||||+++.|++.++..+++.|.+........+..+..+.......++..+.......+ ..+.++|++++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~ 80 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACS 80 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 48999999999999999999999999999999875322112233455544445566666655444433 46778999998
Q ss_pred cccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778 119 ALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVS 185 (433)
Q Consensus 119 ~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id 185 (433)
.....+++.+.+.. . ..+|||+++.+++.+|+.+|.+...+.+.+..++..++++.. .+...++||
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ 149 (150)
T cd02021 81 ALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPGE-DEEDVIVID 149 (150)
T ss_pred cccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCC-CCCCeEEcc
Confidence 88888888888752 2 679999999999999999997766667788889988888764 344566665
No 36
>PRK00625 shikimate kinase; Provisional
Probab=99.67 E-value=3.2e-16 Score=139.02 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
+.|+|+|+|||||||+++.|++++|++++|+|.+++....... .....|. ..++..++..+..+...+.. .+.||+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~-~~Ge~~fr~~E~~~l~~l~~-~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ-AYGEEGFCREEFLALTSLPV-IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH-HHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence 4799999999999999999999999999999998754211100 0111121 23455566666555444444 456777
Q ss_pred cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhhccCCCCCCCCCeEEEcc-----
Q psy16778 117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQTLEEPDPLVEPDVRTVSV----- 186 (433)
Q Consensus 117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~Id~----- 186 (433)
+++ ..++..+.++.. ..+|||++|++++.+|+.+|+... ...+.+.+.+..+.+.| ++.++++|++
T Consensus 79 ~GGg~~~~~e~~~~l~~~--~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y--~~~ad~~i~~~~~~~ 154 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNR--GLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRM--RSIADYIFSLDHVAE 154 (173)
T ss_pred CCCCccCCHHHHHHHhcC--CEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHH--HHHCCEEEeCCCccc
Confidence 765 445556666655 389999999999999999885321 13456666777777766 4456676554
Q ss_pred -C-CCHHHHHHHHhcC
Q psy16778 187 -N-EPLEGIVSKSAIM 200 (433)
Q Consensus 187 -~-~~~ee~~~~i~~~ 200 (433)
+ .++.++.+.+..+
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (173)
T PRK00625 155 TSSESLMRACQSFCTL 170 (173)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3 5555555555443
No 37
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.67 E-value=1.3e-16 Score=155.81 Aligned_cols=137 Identities=31% Similarity=0.396 Sum_probs=111.5
Q ss_pred CHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc----------------
Q psy16778 293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD---------------- 349 (433)
Q Consensus 293 ~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~---------------- 349 (433)
++|+.|....+...|-|+...+++|.+...|+.|... .+...++ ++.+.++|++.+-
T Consensus 2 d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ 81 (344)
T cd02922 2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPD 81 (344)
T ss_pred hHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCch
Confidence 6899998888888999999999999999999999655 6666665 3446777776641
Q ss_pred -------ccccc------CCCccchHHHHHhh-CCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCch
Q psy16778 350 -------IRNKF------NMPSHLNIEELAEK-TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY 415 (433)
Q Consensus 350 -------~~~~~------~~~~~~s~e~i~~~-~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~r~ 415 (433)
.+... +..++.|+|+|.+. .++.+.|||||+++|+..+.++++||+++||++|+||||+|+.|+|+
T Consensus 82 ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~ 161 (344)
T cd02922 82 GELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRE 161 (344)
T ss_pred HHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcch
Confidence 11111 12356789999877 34567899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCC
Q psy16778 416 ADIRNKFNMPSHLK 429 (433)
Q Consensus 416 ~~~r~~~~~~~~~~ 429 (433)
+|.|++|..|.+++
T Consensus 162 ~d~r~~~~~p~~~~ 175 (344)
T cd02922 162 RDERLKAEEAVSDG 175 (344)
T ss_pred hhhhhcCCcCcccc
Confidence 99999999987543
No 38
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.66 E-value=3.7e-16 Score=162.54 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
.+-..|+|+|+|||||||+++.||+++|++|+|+|.++++.. ++.....|. ..++..|+..|..+...+....++||
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~--g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~VI 80 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI--GMSIPSYFE-EYGEPAFREVEADVVADMLEDFDGIF 80 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH--CcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 345689999999999999999999999999999999875422 222222333 34566677777665544433346788
Q ss_pred EcCc---ccHHHHHHH----HhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 116 VCSA---LRRNYRDII----RNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 116 ~~~~---~~~~~~~~l----~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
++|+ ..+..++.| ++. ..+|||+++++++.+|+..+.++|.- .+.+.+.++.+++.| ++.++++|
T Consensus 81 s~GGG~v~~~~n~~~L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y--~~~Ad~~i 156 (542)
T PRK14021 81 SLGGGAPMTPSTQHALASYIAHG--GRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVF--RQVANVHV 156 (542)
T ss_pred ECCCchhCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHH--HhhCCEEE
Confidence 8876 445666655 344 48999999999999999765544432 456777788888877 66789999
Q ss_pred ccC-CCHHHHHHHHhcCCC
Q psy16778 185 SVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 185 d~~-~~~ee~~~~i~~~l~ 202 (433)
+++ .++++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 157 HTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred ECCCCCHHHHHHHHHHHHH
Confidence 998 899999999888764
No 39
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.64 E-value=8.6e-16 Score=136.73 Aligned_cols=157 Identities=27% Similarity=0.408 Sum_probs=105.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHH-HHHHHhhhCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNIN-RIIHQLNVDN 110 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 110 (433)
+++++.|+|+|++||||||+|+.|++.+|+.++|.|.+.... .|....+ ..+...+...+ ..+..+....
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 74 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEAR------AGKSIPEIFEEEGEAAFRELEEEVLAELLARH 74 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH------cCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Confidence 467889999999999999999999999999999999876431 1222111 11223333333 3444444333
Q ss_pred CcEEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeE
Q psy16778 111 LTGVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVR 182 (433)
Q Consensus 111 ~~~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~ 182 (433)
++||.+++ .....+..++.. ..+|||++|++++.+|+.+|.+++. ..+.+...+..+...+ ...+++
T Consensus 75 -~~vi~~g~~~~~~~~~r~~l~~~--~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~dl 149 (175)
T PRK00131 75 -NLVISTGGGAVLREENRALLRER--GTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLY--EEVADI 149 (175)
T ss_pred -CCEEEeCCCEeecHHHHHHHHhC--CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--HhhcCe
Confidence 45665543 345667777554 4899999999999999988764322 1233444454444433 344679
Q ss_pred EEccC-CCHHHHHHHHhcCCC
Q psy16778 183 TVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 183 ~Id~~-~~~ee~~~~i~~~l~ 202 (433)
+|+++ .+++++++.|.+.+.
T Consensus 150 ~idt~~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 150 TVETDGRSPEEVVNEILEKLE 170 (175)
T ss_pred EEeCCCCCHHHHHHHHHHHHH
Confidence 99988 999999999887764
No 40
>PRK13947 shikimate kinase; Provisional
Probab=99.63 E-value=4.3e-15 Score=132.07 Aligned_cols=149 Identities=21% Similarity=0.272 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
.|+|+|+|||||||+++.||+.+|++++|.|.+.... .|.... ...++..++..+..+...+.....+||+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~ 76 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIA 76 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEE
Confidence 6999999999999999999999999999999986442 122221 1233455665555444444444467777
Q ss_pred cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778 117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN- 187 (433)
Q Consensus 117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~- 187 (433)
+++ ........+.+.+ .+|||+++++.+.+|+..|..++.. ...+...+..+.+.+ +.++++|+++
T Consensus 77 ~g~g~vl~~~~~~~l~~~~--~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y---~~ad~~Idt~~ 151 (171)
T PRK13947 77 TGGGVVLNPENVVQLRKNG--VVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY---DFADYTIDTGD 151 (171)
T ss_pred CCCCCcCCHHHHHHHHhCC--EEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH---HhcCEEEECCC
Confidence 665 4455667777664 7999999999999999877654331 223333344444333 1257889987
Q ss_pred CCHHHHHHHHhc
Q psy16778 188 EPLEGIVSKSAI 199 (433)
Q Consensus 188 ~~~ee~~~~i~~ 199 (433)
.+++++++.|.+
T Consensus 152 ~~~~~i~~~I~~ 163 (171)
T PRK13947 152 MTIDEVAEEIIK 163 (171)
T ss_pred CCHHHHHHHHHH
Confidence 999999999887
No 41
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.62 E-value=1.8e-14 Score=128.65 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCe--EEeCCCCCcccccccc--ccCCCCCC-------cCChhHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVK--FIDGDHLHPQSNIDKM--SAKQPLND-------EDRRPWLNNINRIIHQ 105 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~--~id~D~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~ 105 (433)
++.+|+|+|+|||||||+++.|++.++.. +++.|.+......... ..++.+.. +.....+......+..
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 80 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA 80 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence 46799999999999999999999998654 4577766432110000 00111111 1111234455566777
Q ss_pred hhhCCCcEEEEcCcc-cHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeE
Q psy16778 106 LNVDNLTGVLVCSAL-RRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVR 182 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 182 (433)
++.+|.++|++.... ....++.+..... +..||++||.+++.+|+.+|++.. ......+....+.+.. .++
T Consensus 81 ~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~--~~~~~~~~~~~~~~~~----~dl 154 (175)
T cd00227 81 MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRV--PGQARKQARVVHAGVE----YDL 154 (175)
T ss_pred HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCcc--chHHHHHHHHhcCCCc----ceE
Confidence 888999999997765 4555555554432 689999999999999999997432 2223333443443321 579
Q ss_pred EEccC-CCHHHHHHHHhcCCC
Q psy16778 183 TVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 183 ~Id~~-~~~ee~~~~i~~~l~ 202 (433)
+||++ .+++|.+++|++.++
T Consensus 155 ~iDts~~s~~e~a~~i~~~l~ 175 (175)
T cd00227 155 EVDTTHKTPIECARAIAARVQ 175 (175)
T ss_pred EEECCCCCHHHHHHHHHHhcC
Confidence 99998 789999999988764
No 42
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.61 E-value=4.1e-15 Score=132.24 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC---CCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL---NDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
..|+|+|++||||||+++.|++++|++++|.|.+..... +... ....++..++..+..+...+..+ .+||
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi 75 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREGWAGFRARESAALEAVTAP-STVI 75 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEE
Confidence 579999999999999999999999999999998864321 2111 11234555655555444444443 5677
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC---CC-----CHHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH---FM-----PADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~---~~-----~~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
++++ .....++++++.. ++|||+++++++.+|+.+|... +. ..+.+...++.+.+.| .+.+.++|
T Consensus 76 ~~ggg~vl~~~~~~~l~~~~--~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y--~~~a~~~I 151 (171)
T PRK03731 76 ATGGGIILTEENRHFMRNNG--IVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALY--REVAHHII 151 (171)
T ss_pred ECCCCccCCHHHHHHHHhCC--EEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHH--HHhCCEEE
Confidence 7764 4566778887764 8999999999999999876421 11 1233444444444443 33466999
Q ss_pred ccCCCHHHHHHHHhcCCC
Q psy16778 185 SVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 185 d~~~~~ee~~~~i~~~l~ 202 (433)
|++.+++++.+++...+.
T Consensus 152 d~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 152 DATQPPSQVVSEILSALA 169 (171)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 998999999999887664
No 43
>PRK06762 hypothetical protein; Provisional
Probab=99.61 E-value=9.3e-15 Score=129.32 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV 114 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 114 (433)
++++|+|+|++||||||+++.|++.+ ++.+++.|.+.... ..+.. .+. ......+...+...+..+..+|
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-----~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~vi 72 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-----LRVKD--GPG-NLSIDLIEQLVRYGLGHCEFVI 72 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-----ccccC--CCC-CcCHHHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999999998 67788888875321 11111 111 1122334444445556777777
Q ss_pred EEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhC-CCCCHHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778 115 LVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAE-HFMPADLLESQFQTLEEPDPLVEPDVRTVSVN- 187 (433)
Q Consensus 115 i~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~- 187 (433)
++.......+++.++ .... +.+|||++|.+++.+|..+|.. +..+.+.++.++..++.++. ++.+++++
T Consensus 73 ld~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~ 148 (166)
T PRK06762 73 LEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV----IGETIFTDN 148 (166)
T ss_pred EchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC----CCeEEecCC
Confidence 876654444443333 2222 6899999999999999999965 34567788888888887642 44566665
Q ss_pred CCHHHHHHHHhcCCC
Q psy16778 188 EPLEGIVSKSAIMPP 202 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~ 202 (433)
.++++++++|...+.
T Consensus 149 ~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 149 LSLKDIFDAILTDIG 163 (166)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999987654
No 44
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.58 E-value=7.3e-16 Score=135.28 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc---ccHH
Q psy16778 47 SGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA---LRRN 123 (433)
Q Consensus 47 ~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~---~~~~ 123 (433)
|||||||+++.||+.||++|+|+|.++..... +..+..+... ++..|+..+..+...+....++||++|+ ..+.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g--~si~~i~~~~-G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~ 77 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG--MSISEIFAEE-GEEAFRELESEALRELLKENNCVIACGGGIVLKEE 77 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT--SHHHHHHHHH-HHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC--CcHHHHHHcC-ChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHH
Confidence 79999999999999999999999998754221 2222233322 3455555555554444444488998855 6688
Q ss_pred HHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH--H---hHHHHHhhccCCCCCCCCCeEEEccC-CCHHHHHHHH
Q psy16778 124 YRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA--D---LLESQFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKS 197 (433)
Q Consensus 124 ~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~--~---~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i 197 (433)
+++.|++.+ .+|||+++++++.+|+..+..+|... . .....+..+.+.| ...++++++++ .++++++.+|
T Consensus 78 ~~~~L~~~g--~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y--~~~a~~~v~~~~~~~~~i~~~i 153 (158)
T PF01202_consen 78 NRELLKENG--LVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLY--EQAADIVVDTDGSPPEEIAEEI 153 (158)
T ss_dssp HHHHHHHHS--EEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHH--HHHSSEEEETSSCHHHHHHHHH
T ss_pred HHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHH--HhcCeEEEeCCCCCHHHHHHHH
Confidence 889999664 89999999999999998887643321 1 2223333444444 44588999999 5559999988
Q ss_pred hcCC
Q psy16778 198 AIMP 201 (433)
Q Consensus 198 ~~~l 201 (433)
.+.+
T Consensus 154 ~~~l 157 (158)
T PF01202_consen 154 LEFL 157 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 45
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.58 E-value=6.8e-15 Score=126.96 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
+|.+|+|+|.|||||||+|+.|.++| ...++|+|.+... +..+..|+.++.....+++.++...+..+|.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~-----l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ 75 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG-----LNADLGFSKEDREENIRRIAEVAKLLADQGI 75 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT-----TTTT--SSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc-----cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999998 4568999988632 3446667777778888888888888889998
Q ss_pred cEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH
Q psy16778 112 TGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL 150 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl 150 (433)
.+|++.....++.|+.+++..+ ++.|||+||.+++.+|.
T Consensus 76 ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 76 IVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp EEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred eEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 8888888888888888877643 78999999999999994
No 46
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.53 E-value=4.4e-14 Score=119.77 Aligned_cols=156 Identities=21% Similarity=0.191 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCc----CChhHHH-HHHHHHHHhhhCCCcE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDE----DRRPWLN-NINRIIHQLNVDNLTG 113 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~ 113 (433)
|+|.|.|+|||||||+++.||+++|+.+++++.++++. ....|+.+.+. ...+..+ .+.........+ .++
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~---A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~-~nv 76 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREM---ARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKE-GNV 76 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHH---HHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHc-CCe
Confidence 57999999999999999999999999999999987652 33457766541 1112222 233344444443 356
Q ss_pred EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC------HHhHHHHHhhccCCCC----CCCCCeEE
Q psy16778 114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP------ADLLESQFQTLEEPDP----LVEPDVRT 183 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~----~~~~~~~~ 183 (433)
|+.+- ... ++.+....+.|||.+|.+++.+|+.+|.+.... .++-+...+++.+.|. +-...+++
T Consensus 77 Vlegr--LA~---Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLV 151 (179)
T COG1102 77 VLEGR--LAG---WIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLV 151 (179)
T ss_pred EEhhh--hHH---HHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEE
Confidence 65321 122 222211168999999999999999999864432 1112223334443333 24457899
Q ss_pred EccC-CCHHHHHHHHhcCCCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l~~ 203 (433)
||+. .+++++..-+...+..
T Consensus 152 inTs~~~~~~v~~il~~aid~ 172 (179)
T COG1102 152 INTSKWDPEEVFLILLDAIDA 172 (179)
T ss_pred EecccCCHHHHHHHHHHHHHh
Confidence 9998 8888888777665543
No 47
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.53 E-value=4.2e-14 Score=126.37 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
..+|..|+|+|++||||||+++.|+++++ ..++++|.+..... ..+ +.....................+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~----~~~--~~~~~~~~~~~~~~~l~~~l~~~ 77 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG----HYG--YDKQSRIEMALKRAKLAKFLADQ 77 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC----CCC--CCHHHHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999884 77888887643110 111 11111111112222222223356
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN- 187 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~- 187 (433)
|..+|+++++..+..++..+.... ..+|||+++++++.+|+..+--.....+.++..+..+.+.+ ...++++|+++
T Consensus 78 g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~--~~~Ad~vI~~~~ 155 (176)
T PRK05541 78 GMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFD--EPKADLVIDNSC 155 (176)
T ss_pred CCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCccc--CCCCCEEEeCCC
Confidence 666777766544444444444333 57999999999999998532000011122333344444444 33478999998
Q ss_pred -CCHHHHHHHHhcCCCC
Q psy16778 188 -EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 188 -~~~ee~~~~i~~~l~~ 203 (433)
.++++.++.+.+.+..
T Consensus 156 ~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 156 RTSLDEKVDLILNKLKL 172 (176)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 4899988888766544
No 48
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.53 E-value=1.3e-13 Score=123.21 Aligned_cols=160 Identities=22% Similarity=0.280 Sum_probs=105.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.+|.+|+|+|+|||||||+++.|++.+ | +.++++|.+... +..+..+.......+++.+..+.......|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~-----~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g 76 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTN-----LSKGLGFSKEDRDTNIRRIGFVANLLTRHG 76 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHH-----HhcCCCCChhhHHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999988 2 678999977422 223445555555566666555554445567
Q ss_pred CcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778 111 LTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~ 187 (433)
..+++++......+++.+.+... +.+|||+++.+++.+|. .|+ .... .+.+...+....+.|. ...++++|+++
T Consensus 77 ~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~-~~~-l~~~~~~~~i~~~~~~~~~~~~-p~~ad~~i~~~ 153 (175)
T PRK00889 77 VIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD-VKG-LYAKARAGEIKHFTGIDDPYEP-PLNPEVECRTD 153 (175)
T ss_pred CEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC-ccc-HHHHHHcCCCCCCcccCCCCCC-CCCCcEEEECC
Confidence 66666666555667777766544 68999999999999995 111 0000 0111222222333321 13377888887
Q ss_pred -CCHHHHHHHHhcCCCC
Q psy16778 188 -EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 188 -~~~ee~~~~i~~~l~~ 203 (433)
.++++++++|.+.+..
T Consensus 154 ~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 154 LESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 8999999999887743
No 49
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.53 E-value=1.8e-14 Score=140.10 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=110.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHH-HHHHh
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINR-IIHQL 106 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~ 106 (433)
....++++..|+|+|++||||||+++.|++++|++++|.|..+... .|....+ ..++..++.++. .+..+
T Consensus 126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~l 199 (309)
T PRK08154 126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERL 199 (309)
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3445688899999999999999999999999999999999775431 2332221 123444544444 34444
Q ss_pred hhCCCcEEEEcCccc---HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC-C-----CCHHhHHHHHhhccCCCCCC
Q psy16778 107 NVDNLTGVLVCSALR---RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH-F-----MPADLLESQFQTLEEPDPLV 177 (433)
Q Consensus 107 ~~~~~~~Vi~~~~~~---~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~-~-----~~~~~l~~~~~~~~~~~~~~ 177 (433)
+.....+||.+++.. +.....+... +++|||++|++++.+|+.+|.+. + ...+.+...+..+.++|.
T Consensus 200 l~~~~~~VI~~Ggg~v~~~~~~~~l~~~--~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~-- 275 (309)
T PRK08154 200 IAEHEEMVLATGGGIVSEPATFDLLLSH--CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYA-- 275 (309)
T ss_pred HhhCCCEEEECCCchhCCHHHHHHHHhC--CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHH--
Confidence 444445788776632 2333344444 48999999999999999887531 2 113556666666666552
Q ss_pred CCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778 178 EPDVRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 178 ~~~~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
.++++|+++ .+++++++.|...+.
T Consensus 276 -~ad~~I~t~~~s~ee~~~~I~~~l~ 300 (309)
T PRK08154 276 -RADAVVDTSGLTVAQSLARLRELVR 300 (309)
T ss_pred -hCCEEEECCCCCHHHHHHHHHHHHH
Confidence 267899998 799999999877654
No 50
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.53 E-value=3.3e-14 Score=123.92 Aligned_cols=145 Identities=25% Similarity=0.350 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA 119 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~ 119 (433)
.|+|+|++||||||+++.|++.+|+.+++.|.+..... +......++ ..++..++..+..+...+.....+||++++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~ 77 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA--GMSIPEIFA-EEGEEGFRELEREVLLLLLTKENAVIATGG 77 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc--CCCHHHHHH-HHCHHHHHHHHHHHHHHHhccCCcEEECCC
Confidence 38999999999999999999999999999998864321 100010111 123334444444333333333467777654
Q ss_pred ---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhhccCCCCCCCCCeEEEccC-CCHH
Q psy16778 120 ---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQTLEEPDPLVEPDVRTVSVN-EPLE 191 (433)
Q Consensus 120 ---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~e 191 (433)
.....++.+... .++|||++|++++.+|+.+|..++.. .+.+...+..+.+.| ++.++++|+++ .+++
T Consensus 78 ~~i~~~~~~~~~~~~--~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y--~~~ad~~i~~~~~~~~ 153 (154)
T cd00464 78 GAVLREENRRLLLEN--GIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLY--REVADLTIDTDELSPE 153 (154)
T ss_pred CccCcHHHHHHHHcC--CeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHH--HHhCcEEEECCCCCCC
Confidence 333334555554 48999999999999999888644332 235666666666665 55688999987 5543
No 51
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.52 E-value=2.9e-13 Score=121.84 Aligned_cols=160 Identities=19% Similarity=0.301 Sum_probs=110.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
..++|.+|+|+|++||||||+++.|++.+ | ..++++|.+... +..+..+........+..+......+..
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHG-----LNKDLGFSEEDRKENIRRIGEVAKLFVR 88 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhh-----hccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34778999999999999999999999987 3 568888887532 2223444444555566666666777778
Q ss_pred CCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCC--CHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778 109 DNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFM--PADLLESQFQTLEEPDPLVEPDVRT 183 (433)
Q Consensus 109 ~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (433)
+|..+|+++......+++.++.... +.+|||++|.+++.+|.. ++ ... ..+.+... .....+|+.-+.++++
T Consensus 89 ~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~-~~-l~~~~~~~~~~~l-~~~~~~y~~p~~adl~ 165 (184)
T TIGR00455 89 NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDP-KG-LYKKARNGEIKGF-TGIDSPYEAPENPEVV 165 (184)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCc-hh-HHHHHhcCCccCc-ccccCCCCCCCCCcEE
Confidence 8989999998888888888877654 678999999999999932 10 000 00011111 1112222111458899
Q ss_pred EccC-CCHHHHHHHHhcCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l 201 (433)
|+++ .++++++++|...|
T Consensus 166 Idt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 166 LDTDQNDREECVGQIIEKL 184 (184)
T ss_pred EECCCCCHHHHHHHHHHhC
Confidence 9998 79999999887643
No 52
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.52 E-value=1.1e-13 Score=134.51 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=103.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
+.+|+|+|+|||||||+++.|++++ ++.+++.|.+...........++.+...............+...+..+.++|++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4789999999999999999999999 999999999753311111011122221111111223344455566678889999
Q ss_pred cCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC---------CCCCCeE
Q psy16778 117 CSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP---------LVEPDVR 182 (433)
Q Consensus 117 ~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~ 182 (433)
++......++.+.+ ... +.+|||+++.+++.+|+.+|+++..+.+.+..++.+++.+.. ..+...+
T Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (300)
T PHA02530 82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAV 161 (300)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEE
Confidence 98877666654433 322 567999999999999999997777788888877766665421 0123456
Q ss_pred EEccCCCHHHH
Q psy16778 183 TVSVNEPLEGI 193 (433)
Q Consensus 183 ~Id~~~~~ee~ 193 (433)
.+|.+.++.+.
T Consensus 162 ~~D~dgtl~~~ 172 (300)
T PHA02530 162 IFDIDGTLAKM 172 (300)
T ss_pred EEECCCcCcCC
Confidence 66666665544
No 53
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.52 E-value=2.1e-13 Score=124.28 Aligned_cols=159 Identities=16% Similarity=0.252 Sum_probs=104.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
..++..|+|+|++||||||+++.|++.+ |..++++|++..... ....+..+.....++.+...+.....+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~-----~~~~~~~~~~~~~~~~l~~~a~~~~~~ 95 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC-----SDLGFSDADRKENIRRVGEVAKLMVDA 95 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh-----hcCCcCcccHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999987 468899988753211 112233333455666666666666677
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCC--CCCeE
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLV--EPDVR 182 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~--~~~~~ 182 (433)
|..+|.++......+|+.+++... +++|||++|.+++.+|.. |+ .... .+.+...+. ...+| + +.+++
T Consensus 96 G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~-l~~~~~~~~~~~l~~-~r~~Y--~~p~~ad~ 170 (198)
T PRK03846 96 GLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KG-LYKKARAGEIRNFTG-IDSVY--EAPESPEI 170 (198)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hh-HHHHhhcCCccCccc-ccccC--CCCCCCCE
Confidence 766666666556777777776543 458999999999999921 11 0000 011111111 22223 3 44789
Q ss_pred EEccC-CCHHHHHHHHhcCCCC
Q psy16778 183 TVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 183 ~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
+|+++ .++++++++|.+.+..
T Consensus 171 ~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 171 HLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred EEECCCCCHHHHHHHHHHHHHH
Confidence 99987 8999999999887654
No 54
>PRK14531 adenylate kinase; Provisional
Probab=99.51 E-value=7.5e-14 Score=125.55 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc----------ccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM----------SAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.+.|+|+|+|||||||+++.|++.+|+.+++++++.+....... ..|....+ .-....+.+.+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d---~l~~~~~~~~l~~~- 77 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD---ALVLAIVESQLKAL- 77 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhhc-
Confidence 45799999999999999999999999999999888643211110 01111100 01111122222221
Q ss_pred hCCCcEEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CC
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PD 174 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~ 174 (433)
.+.++||++.+.+....+.+.+ .. . ..+++|++|++++.+|+..|+......+.+...+..++. .|
T Consensus 78 -~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y 156 (183)
T PRK14531 78 -NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHY 156 (183)
T ss_pred -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899888776665554433 22 1 569999999999999999986544444555444444432 11
Q ss_pred CCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 175 PLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 175 ~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
. ...-.+.||.+.+++++...+...+
T Consensus 157 ~-~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 157 R-QRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred H-hcCCEEEEECCCCHHHHHHHHHHHh
Confidence 1 2234688888899999999887654
No 55
>PRK14530 adenylate kinase; Provisional
Probab=99.50 E-value=4e-13 Score=124.06 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc-ccCCCCCCc------CChhHHHHHHHHHHHhhhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM-SAKQPLNDE------DRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (433)
+++.|+|+|+|||||||+++.|++++|+.|++++++......... ..+..+... .....-.....++...+..
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999998754221000 000000000 0000001233344444444
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC-------------------------------
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF------------------------------- 157 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~------------------------------- 157 (433)
..++|+++.+......+.+.+... ..+|||++|.+++.+|+..|...+
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~d 161 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDD 161 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCC
Confidence 567899976666666666655333 689999999999999998885211
Q ss_pred CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 158 MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 158 ~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
...+.+...+..|.. .|. .....+.||.+.+++++.+.+...+.+
T Consensus 162 D~~e~i~~Rl~~y~~~~~~v~~~y~-~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 162 DTEETVRERLDVFEENTEPVIEHYR-DQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-hCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 113334444444432 111 112456788888999988888776644
No 56
>PRK03839 putative kinase; Provisional
Probab=99.49 E-value=1.9e-13 Score=122.54 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
|+|+|+|+|||||||+++.|++++|++|+++|++..... .+..+... ....++.++..+.... .+.++|+++.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~vIidG~ 73 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDDE-MEIDFDKLAYFIEEEF-KEKNVVLDGH 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCChh-hhcCHHHHHHHHHHhc-cCCCEEEEec
Confidence 479999999999999999999999999999999875421 12222221 2234555655555433 3446777653
Q ss_pred cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-HHhHHHHHhhc--cCCCCCCCCCeEEEccC-CCHHHHH
Q psy16778 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-ADLLESQFQTL--EEPDPLVEPDVRTVSVN-EPLEGIV 194 (433)
Q Consensus 119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-~~~l~~~~~~~--~~~~~~~~~~~~~Id~~-~~~ee~~ 194 (433)
. ..+... ..+|||+++++++.+|+.+|...... .+.....+... .+.+. .....++||++ .+++++.
T Consensus 74 ~------~~l~~~--~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~Id~~~~s~eev~ 144 (180)
T PRK03839 74 L------SHLLPV--DYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALE-EKEKVIEVDTTGKTPEEVV 144 (180)
T ss_pred c------ccccCC--CEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCCHHHHH
Confidence 2 112222 47899999999999999888521100 11111111110 01111 12256889997 7999999
Q ss_pred HHHhcCCCCCCC
Q psy16778 195 SKSAIMPPTRAP 206 (433)
Q Consensus 195 ~~i~~~l~~~~~ 206 (433)
.+|.+.+....+
T Consensus 145 ~~I~~~l~~~~~ 156 (180)
T PRK03839 145 EEILELIKSGKK 156 (180)
T ss_pred HHHHHHHhcCCC
Confidence 999888766433
No 57
>PLN02200 adenylate kinase family protein
Probab=99.48 E-value=2.1e-13 Score=127.12 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc----------cCCCCCCcCChhHHHHHHH
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS----------AKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 101 (433)
.+..+.+.+|+|+|+|||||||+++.|++++|+.|++.+++.+........ .|....+ ......+.+
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~---e~~~~~l~~ 113 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPS---EVTVKLIQK 113 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcH---HHHHHHHHH
Confidence 334566789999999999999999999999999999998886432111000 0111100 111112222
Q ss_pred HHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhC-CCC-CHHhHHHHHhhccCC---
Q psy16778 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAE-HFM-PADLLESQFQTLEEP--- 173 (433)
Q Consensus 102 ~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~-~~~-~~~~l~~~~~~~~~~--- 173 (433)
.+.. ..+.++||++.+....++..+.+... ..+++|+++++++.+|+.+|.. +.. ..+.+...++.+...
T Consensus 114 ~l~~--~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~p 191 (234)
T PLN02200 114 EMES--SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLP 191 (234)
T ss_pred HHhc--CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2221 12356899987776666665554321 6899999999999999998852 222 233443333332221
Q ss_pred ----CCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 174 ----DPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 174 ----~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
|. .....+.||.+.+++++.+.+.+.+..
T Consensus 192 v~~~y~-~~~~~~~IDa~~~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 192 VIDYYS-KKGKLYTINAVGTVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 11 122468899889999999998877543
No 58
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.48 E-value=2.4e-13 Score=139.32 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
|.|+|+|++||||||+++.|++++|++++|+|.+..+. .|....+ ..++.+++..+..+...+......||
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 47999999999999999999999999999999986442 2322221 23456666666655544433446888
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC---HHhHHHHHhhccCCCCCCCCCeEEEccC-C
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP---ADLLESQFQTLEEPDPLVEPDVRTVSVN-E 188 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~ 188 (433)
++++ ....+++.+++. .+|||+++++++.+|+..+ ++|.. .+.+...++.+.+.|. + ..+|+++ .
T Consensus 75 s~Gggvv~~~~~r~~l~~~---~vI~L~as~e~l~~Rl~~~-~RPLl~~~~e~l~~L~~~R~~lY~--~--~~~IDt~~~ 146 (488)
T PRK13951 75 ATGGGVVIDPENRELLKKE---KTLFLYAPPEVLMERVTTE-NRPLLREGKERIREIWERRKQFYT--E--FRGIDTSKL 146 (488)
T ss_pred ECCCccccChHHHHHHhcC---eEEEEECCHHHHHHHhccC-CCCCccccHHHHHHHHHHHHHHHh--c--ccEEECCCC
Confidence 8875 456778888764 5899999999999999765 34432 2456667777777663 2 2578887 7
Q ss_pred CHHHHHHHH
Q psy16778 189 PLEGIVSKS 197 (433)
Q Consensus 189 ~~ee~~~~i 197 (433)
++++.+.++
T Consensus 147 s~~e~~~~i 155 (488)
T PRK13951 147 NEWETTALV 155 (488)
T ss_pred CHHHHHHHH
Confidence 787776665
No 59
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.47 E-value=8.6e-13 Score=119.02 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHH---------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR--------------- 101 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 101 (433)
+|.+|+|+|+|||||||+++.|++.++..+++.|..............+. ...+.+++.++.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIA---LSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhhee---EcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 36789999999999999999999988878887776654321111111111 111222222111
Q ss_pred ---HHHHhhhCCCcEEEEcCcccHHHHHHHHhc-CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC
Q psy16778 102 ---IIHQLNVDNLTGVLVCSALRRNYRDIIRNN-NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL 176 (433)
Q Consensus 102 ---~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~ 176 (433)
.+...+..+.++|++++. ...+.+.+. .. ..+|||++|.+++.+|+.+|.+. ..+.+...+.... .+
T Consensus 78 ~~~~~~~~l~~g~~VI~~G~~---~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~--~~~~i~~rl~r~~-~~-- 149 (186)
T PRK10078 78 VGIEIDLWLHAGFDVLVNGSR---AHLPQARARYQSALLPVCLQVSPEILRQRLENRGRE--NASEINARLARAA-RY-- 149 (186)
T ss_pred CcHHHHHHHhCCCEEEEeChH---HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC--CHHHHHHHHHHhh-hh--
Confidence 133345567666654442 222222222 22 67899999999999999988532 2233444443321 11
Q ss_pred CCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 177 VEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 177 ~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
...+.++|+++.+++++.++|...+..
T Consensus 150 ~~ad~~vi~~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 150 QPQDCHTLNNDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred ccCCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 223557888779999999999888755
No 60
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.47 E-value=5e-14 Score=138.57 Aligned_cols=96 Identities=44% Similarity=0.635 Sum_probs=86.9
Q ss_pred eccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHH
Q psy16778 312 IYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLV 391 (433)
Q Consensus 312 ~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~ 391 (433)
.+.+.|. .+.+.|+++|....+.|. ++.++|++.+..+ .+.|||+|++.|+..+.+++
T Consensus 72 ~~~~ge~--~lAraA~~~Gi~~~lss~-------------------s~~~~e~ia~~~~-~~~~~Qly~~~d~~~~~~~i 129 (356)
T PF01070_consen 72 AHPDGER--ALARAAAKAGIPMMLSSQ-------------------SSASLEEIAAASG-GPLWFQLYPPRDRELTRDLI 129 (356)
T ss_dssp TSTTHHH--HHHHHHHHHTSEEEEETT-------------------CSSCHHHHHHHCT-SEEEEEEEGBSSHHHHHHHH
T ss_pred hccchHH--HHHHHHhccCcceeccCC-------------------ccCCHHHHHhhcc-CCeEEEEEEecCHHHHHHHH
Confidence 3556666 689999999999999887 7889999998866 57899999999999999999
Q ss_pred HHHHHcCCcEEEEecCCCCCCCchhhhhcCCCCCCCCC
Q psy16778 392 QRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLK 429 (433)
Q Consensus 392 ~ra~~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~~~~ 429 (433)
+||+++||+||+||||+|+.|+|++|.|++|++|++++
T Consensus 130 ~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~ 167 (356)
T PF01070_consen 130 RRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLS 167 (356)
T ss_dssp HHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHC
T ss_pred HHhhcCCCCEEEEECcCcccCCcccccccccCCCcccc
Confidence 99999999999999999999999999999999998863
No 61
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.46 E-value=3.3e-13 Score=121.29 Aligned_cols=162 Identities=12% Similarity=0.162 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh--CCCcEE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV--DNLTGV 114 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~V 114 (433)
+|+|+|+|||||||+++.|++++|+.+++++++.+.........+...+. ......-+.....+...+. .+.++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 48999999999999999999999999999988764321110000000000 0000001111223333222 256789
Q ss_pred EEcCcccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCC---C-CCHHhHHHHHhhccCCC-----CC-CCC
Q psy16778 115 LVCSALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEH---F-MPADLLESQFQTLEEPD-----PL-VEP 179 (433)
Q Consensus 115 i~~~~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~---~-~~~~~l~~~~~~~~~~~-----~~-~~~ 179 (433)
+++.+.+......+.+. .. ..+|||++|++++.+|+.+|... . ...+.+...+..+.+.. ++ ...
T Consensus 81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~ 160 (183)
T TIGR01359 81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG 160 (183)
T ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99887665554433321 12 57999999999999999998632 1 12344444433332210 00 112
Q ss_pred CeEEEccCCCHHHHHHHHhcCC
Q psy16778 180 DVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 180 ~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..++||++.+++++.+.+.+.+
T Consensus 161 ~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 161 KVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 4578999999999999887654
No 62
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.46 E-value=1.4e-13 Score=118.34 Aligned_cols=133 Identities=24% Similarity=0.342 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA 119 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~ 119 (433)
+|+++|+|||||||+++.|++.++..+++.|.+.......... ...............+...+...+..|.++|++.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~ 79 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPP-SPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN 79 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSG-CCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccc-cchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc
Confidence 5899999999999999999999999999999976431110000 000000111122234445566667788899999887
Q ss_pred ccHHHHH----HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC-----CCHHhHHHHHhhccCC
Q psy16778 120 LRRNYRD----IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF-----MPADLLESQFQTLEEP 173 (433)
Q Consensus 120 ~~~~~~~----~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~-----~~~~~l~~~~~~~~~~ 173 (433)
.....++ .+++.+- ..+|+|+++.+++.+|+.+|.... .+.+.+.++++.++.|
T Consensus 80 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 80 LSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP 143 (143)
T ss_dssp -SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence 6655544 4443332 689999999999999999997542 3355666666666543
No 63
>PRK14532 adenylate kinase; Provisional
Probab=99.46 E-value=7.1e-13 Score=119.72 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc----------cCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS----------AKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
|.|+|+|+|||||||+++.|++++|+.++++|++.+........ .|..+.+ ......+.+.+.. ..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-~~ 76 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSD---EIVIALIEERLPE-AE 76 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCH---HHHHHHHHHHHhC-cC
Confidence 46999999999999999999999999999999887542111100 1111100 1111122222221 22
Q ss_pred CCCcEEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhh---CCCCC-HHhHHHHHhhc----c---
Q psy16778 109 DNLTGVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRA---EHFMP-ADLLESQFQTL----E--- 171 (433)
Q Consensus 109 ~~~~~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~-~~~l~~~~~~~----~--- 171 (433)
.+.++|+++.+.....++.+. ..+ . ..+|||++|++++.+|+.+|. +++.. .+.+...+..+ .
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~ 156 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL 156 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356789988877666655443 222 1 479999999999999999884 22222 22222222222 1
Q ss_pred CCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.|. .....+.||.+.+++++.++|.+.+
T Consensus 157 ~~y~-~~~~~~~id~~~~~eev~~~I~~~l 185 (188)
T PRK14532 157 PYYA-GQGKLTEVDGMGSIEAVAASIDAAL 185 (188)
T ss_pred HHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence 1111 1224567777799999999987665
No 64
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.45 E-value=6.1e-13 Score=138.64 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=120.4
Q ss_pred ccCCccceeeeeecccC-C-CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------eEEeCCCCCccccccccccC
Q psy16778 13 GMWPPQYVVTLIMTTTL-S-PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGV------KFIDGDHLHPQSNIDKMSAK 84 (433)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~------~~id~D~~~~~~~~~~~~~~ 84 (433)
|.-+|.++...+..+.. . .+...++|.+|+|+|+|||||||+|+.|+++++. .++|+|.+.. .+..+
T Consensus 365 G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~-----~l~ge 439 (568)
T PRK05537 365 GLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK-----HLSSE 439 (568)
T ss_pred CCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH-----hccCC
Confidence 33445555555533221 1 3445678899999999999999999999999985 8999998742 22233
Q ss_pred CCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCccc----HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC--
Q psy16778 85 QPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALR----RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-- 158 (433)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~----~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-- 158 (433)
..|........++.+.......+..|..+|++..... ..+++.+++.+.+++|||+++.+++.+|+.+ ....
T Consensus 440 ~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr--~Ll~~~ 517 (568)
T PRK05537 440 LGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRK--GLYAKA 517 (568)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccc--cccccc
Confidence 4455544444555554555556677877777765533 3556666664325689999999999999632 1111
Q ss_pred CHHhHHHHHhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778 159 PADLLESQFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
..+.++..+..+++.|. -+.++++|+++ .++++++++|.+.+..
T Consensus 518 ~~~~i~~l~~~R~~yy~-p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 518 REGKIKGFTGISDPYEP-PANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred hhchhhccccccccccC-CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 12334444444444331 14578999998 7999999998877644
No 65
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.44 E-value=1.1e-12 Score=115.83 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCCCCCccccccccc--cCCCCCC------cCChhHHHHHHHHHHHhh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV--KFIDGDHLHPQSNIDKMS--AKQPLND------EDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~--~~id~D~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~ 107 (433)
+.+|+|.|+|.|||||+++.|.+.+.. .++..|.+.......... .++.+.. +.....+......+..+.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999954 468888775411101111 1221111 111222344455567777
Q ss_pred hCCCcEEEEcCcccHHH-HHHHHh-cCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778 108 VDNLTGVLVCSALRRNY-RDIIRN-NNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRT 183 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~-~~~l~~-~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (433)
..|.++|++.......+ .+.+++ ... .++|-+.||.+++.+|...|+++... ....++...++... .++.
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--~a~~q~~~Vh~~~~----YDle 154 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--LAAWQAEHVHEGGR----YDLE 154 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT--HHHHHTTGGGTT-------SEE
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH--HHHHHHhhcccCCC----CCEE
Confidence 89999999966544443 344422 112 68899999999999999999875443 44555554554332 5699
Q ss_pred EccC-CCHHHHHHHHhcCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l 201 (433)
|||+ .+++|+++.|++.+
T Consensus 155 VDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 155 VDTSATSPEECAREILARL 173 (174)
T ss_dssp EETTSS-HHHHHHHHHTT-
T ss_pred EECCCCCHHHHHHHHHHHh
Confidence 9999 99999999999876
No 66
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.42 E-value=5e-13 Score=136.36 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=100.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh--
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN-- 107 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 107 (433)
+..+. ..+++|+|.|++||||||+++.|++++|+.++|+|.+++...+..+..++.+.+.... ...++. +....
T Consensus 277 N~~~~-~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~-l~~~~~~ 352 (512)
T PRK13477 277 NVFLM-KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSD-LKIELKP 352 (512)
T ss_pred eeEec-cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhc-CCeeecc
Confidence 34443 4889999999999999999999999999999999999876443333444443321100 000000 00000
Q ss_pred --hCCCcEEEEc------------------CcccHHHHHHHHhc---------------------C-C-eEEEEEEcCHH
Q psy16778 108 --VDNLTGVLVC------------------SALRRNYRDIIRNN---------------------N-R-VVFIYLKAEFG 144 (433)
Q Consensus 108 --~~~~~~Vi~~------------------~~~~~~~~~~l~~~---------------------~-~-~~vv~L~~~~e 144 (433)
..+..+.++. -...+..|+.+.+. . + .+.|||+++++
T Consensus 353 ~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~AdlKIfL~As~e 432 (512)
T PRK13477 353 SSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVE 432 (512)
T ss_pred CCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCCCCEEEEEECCHH
Confidence 0000011110 00112222222111 0 1 58999999999
Q ss_pred HHHHHHHHh-hCCC---CCHHhHHHHHhhcc---------CCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCCCC
Q psy16778 145 VILSRLQKR-AEHF---MPADLLESQFQTLE---------EPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRAPP 207 (433)
Q Consensus 145 ~l~~Rl~~R-~~~~---~~~~~l~~~~~~~~---------~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~~~ 207 (433)
++.+|...+ ..++ ...+.+...+..++ ++| ...++++||++ .+++++++.|.+.+.+..+.
T Consensus 433 vRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy--~a~dai~IDTs~lsieeVv~~Il~~i~~~~~~ 507 (512)
T PRK13477 433 ERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLR--KADDAIELITDGLSIEEVVDKIIDLYRDRIPE 507 (512)
T ss_pred HHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhccccccccc--ccCCeEEEECCCCCHHHHHHHHHHHHHHhCcc
Confidence 999985443 1122 12345555555555 333 45578999998 99999999998887654433
No 67
>PRK02496 adk adenylate kinase; Provisional
Probab=99.42 E-value=7e-13 Score=119.34 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhh---CCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNV---DNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ 112 (433)
+.|+|+|+|||||||+++.|++.+|+.+++.+++...........|.... ........+.+...+...+. ...+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 57999999999999999999999999999998876432111101010000 00000011122222332222 2346
Q ss_pred EEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CCCCCCC
Q psy16778 113 GVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PDPLVEP 179 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 179 (433)
+|+++.+.+......+.+ .. . ..+|+|+++.+++.+|+.+|+......+.+.+.+..+.. .+. ...
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~-~~~ 160 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYR-DRQ 160 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence 889887655444333332 22 2 689999999999999999996544445555555555443 221 112
Q ss_pred CeEEEccCCCHHHHHHHHhcCC
Q psy16778 180 DVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 180 ~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+.||.+.+++++.+.|...+
T Consensus 161 ~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 161 KLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 4688999999999999998765
No 68
>PRK14527 adenylate kinase; Provisional
Probab=99.42 E-value=8.3e-13 Score=119.64 Aligned_cols=166 Identities=13% Similarity=0.119 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhhC-
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNVD- 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 109 (433)
..++++|+|+|+|||||||+++.|++++|+.+++.+++...........+.. +.. ......+.+...+...+.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~l~~~~l~~~ 81 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEA-GDLVPDELILALIRDELAGM 81 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999988864321100000000 000 0000012233333333322
Q ss_pred -CCcEEEEcCcccHHHHHHHH----hcCC--eEEEEEEcCHHHHHHHHHHhhC---CC-CCHHhHHHHHhhccCCCC---
Q psy16778 110 -NLTGVLVCSALRRNYRDIIR----NNNR--VVFIYLKAEFGVILSRLQKRAE---HF-MPADLLESQFQTLEEPDP--- 175 (433)
Q Consensus 110 -~~~~Vi~~~~~~~~~~~~l~----~~~~--~~vv~L~~~~e~l~~Rl~~R~~---~~-~~~~~l~~~~~~~~~~~~--- 175 (433)
+.++|+++.+.....++.+. ..+. ..+++|++|.+++.+|+.+|.. +. ...+.+...++.|..-..
T Consensus 82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~ 161 (191)
T PRK14527 82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV 161 (191)
T ss_pred CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 34688887665555554443 2222 4689999999999999999852 11 123444444433332110
Q ss_pred --CC-CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 176 --LV-EPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 176 --~~-~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
|+ ....+.||.+.+++++.+++...+
T Consensus 162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 162 DYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 12 124678888899999999987654
No 69
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.41 E-value=1.9e-12 Score=116.71 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=100.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----cccCCCCCCc---CChhHHHHHHHHHHHhhhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----MSAKQPLNDE---DRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 109 (433)
+.++|+|+|+|||||||+++.|++.+|+.+++++++........ ......++.. .....+..+.+.+...+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 34689999999999999999999999999999987653311000 0000011111 1122233344444444556
Q ss_pred CCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC---CC-CHHhHHHHHhhcc----C---CCCC
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH---FM-PADLLESQFQTLE----E---PDPL 176 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~---~~-~~~~l~~~~~~~~----~---~~~~ 176 (433)
+.++|+++.+........+.... . ..+|||++|++++.+|+.+|... .. ..+.+..++..+. + .|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~- 160 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE- 160 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH-
Confidence 67788887765544444444322 2 68999999999999999988631 11 2333333332221 1 111
Q ss_pred CCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 177 VEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 177 ~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.....+.||.+.+++++...|...+
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l 185 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAI 185 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHH
Confidence 1224568888899999998887665
No 70
>PRK13808 adenylate kinase; Provisional
Probab=99.41 E-value=9.5e-13 Score=127.18 Aligned_cols=164 Identities=12% Similarity=0.147 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC----CC---cCChhHHHHHHHHHHHhhhCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL----ND---EDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
|.|+|+|+|||||||+++.|++.||+.+|+.+++++.........|... .. .........+.+.+.... ...
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~-~~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD-AAN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-ccC
Confidence 4699999999999999999999999999999988754221111111110 00 001111222333332221 235
Q ss_pred cEEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhC---------C-CCCHHhHHHHHhhccCC--
Q psy16778 112 TGVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAE---------H-FMPADLLESQFQTLEEP-- 173 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~---------~-~~~~~~l~~~~~~~~~~-- 173 (433)
++|||+.+.+....+.|.+ .+ . .++|+|++|++++++|+..|.. + ....+.+...+..|+..
T Consensus 80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~ 159 (333)
T PRK13808 80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTE 159 (333)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhH
Confidence 7899987766555554432 11 2 6899999999999999998721 1 11244444444333221
Q ss_pred ---CCCCC-CCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 174 ---DPLVE-PDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 174 ---~~~~~-~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.+|.+ ...+.||.+.+++++.+.|...|..
T Consensus 160 PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~ 193 (333)
T PRK13808 160 PLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193 (333)
T ss_pred HHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 00122 2467888889999999998887653
No 71
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.41 E-value=1.3e-12 Score=120.08 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=99.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCC--cC-ChhHHHHHHHHHHHhhhCCCcE
Q psy16778 41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LND--ED-RRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
|+|+|+|||||||+++.|++++|+.+++++++.+.........+.. .+. .. .......+.+.+......+.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 8999999999999999999999999999988864321111000100 000 00 0111122222232212225679
Q ss_pred EEEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------CCC
Q psy16778 114 VLVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH-------------------------------FMP 159 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~-------------------------------~~~ 159 (433)
||++.+......+.+.+.. . ..+|+|++|.+++.+|+..|.-. ...
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~ 161 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT 161 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence 9999877766666665432 2 68999999999999999988511 112
Q ss_pred HHhHHHHHhhccCCCC-----C-CCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 160 ADLLESQFQTLEEPDP-----L-VEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 160 ~~~l~~~~~~~~~~~~-----~-~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
.+.+...+..|+.-.. | ...-.+.||.+.+++++...|...++
T Consensus 162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence 3445544444432110 1 11245778888999999988877653
No 72
>PLN02674 adenylate kinase
Probab=99.41 E-value=1.5e-12 Score=120.99 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=103.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---C
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---D 109 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~ 109 (433)
...+.|+|+|+|||||||+++.|++++|+.||+++++.+.........|...+. .+....-+.+..++...+. .
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 445789999999999999999999999999999999975432111111211110 1111111222333333332 2
Q ss_pred CCcEEEEcCcccHHHHHHHHhc----C-C-eEEEEEEcCHHHHHHHHHHhhCC---------------------------
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNN----N-R-VVFIYLKAEFGVILSRLQKRAEH--------------------------- 156 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~----~-~-~~vv~L~~~~e~l~~Rl~~R~~~--------------------------- 156 (433)
..++|+++.+.+....+.|.+. + . ..+|+|++|.+++.+|+..|.-.
T Consensus 109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L 188 (244)
T PLN02674 109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL 188 (244)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence 3578999888776665544332 1 2 68999999999999999988411
Q ss_pred ----CCCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 157 ----FMPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 157 ----~~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
....+.+..+++.|+. .|. ...-.+.||.+.+++++.+.|...+
T Consensus 189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~-~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYA-KKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHh
Confidence 1123444444444432 121 2234677888899999998887654
No 73
>PLN02459 probable adenylate kinase
Probab=99.40 E-value=2e-12 Score=120.80 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=107.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCC----hhHHHHHHHHHHH
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDR----RPWLNNINRIIHQ 105 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~ 105 (433)
+-..+++.|+|+|+|||||||+++.|++.+|+.|++++++++.........|...+. .+. ......+.+.+..
T Consensus 24 ~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 24 LAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA 103 (261)
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence 333455789999999999999999999999999999999875432111111111100 010 1111222233322
Q ss_pred hh-hCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC--------------------------
Q psy16778 106 LN-VDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF-------------------------- 157 (433)
Q Consensus 106 ~~-~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~-------------------------- 157 (433)
.. ....++|+++.+.+....+.|.+... ..+|+|+++.+++++|+..|.-.+
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p 183 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPP 183 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCC
Confidence 21 12357899998888888777776544 689999999999999999884111
Q ss_pred ----------------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 158 ----------------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 158 ----------------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
...+.+..+++.|+. .|. ...-.+.|+...+++++..+|...+..
T Consensus 184 ~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~-~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 184 LLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYR-KRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHH-hcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 113334444444432 121 223456777778999998888877654
No 74
>PRK06217 hypothetical protein; Validated
Probab=99.40 E-value=2e-11 Score=109.85 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
+.|+|+|.|||||||+++.|++++|+++++.|.+.+... +..+...... ... ...+...+..+..+||++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~------~~~~~~~~~~--~~~-~~~~~~~~~~~~~~vi~G~ 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT------DPPFTTKRPP--EER-LRLLLEDLRPREGWVLSGS 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC------CCCccccCCH--HHH-HHHHHHHHhcCCCEEEEcc
Confidence 579999999999999999999999999999999875421 1111111111 111 2233333344567888855
Q ss_pred cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC--------CHHhHHHHHh----hccCC---CC-C------
Q psy16778 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM--------PADLLESQFQ----TLEEP---DP-L------ 176 (433)
Q Consensus 119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~--------~~~~l~~~~~----~~~~~---~~-~------ 176 (433)
.. .+.+.+.... +.+|||++|.+++..|+.+|..... ..+.....+. .++.+ +. .
T Consensus 73 ~~--~~~~~~~~~~-d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T PRK06217 73 AL--GWGDPLEPLF-DLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQW 149 (183)
T ss_pred HH--HHHHHHHhhC-CEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHH
Confidence 43 2333333332 5799999999999999998852210 0111111111 11111 00 0
Q ss_pred ---CCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 177 ---VEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 177 ---~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.....+++++..++++..+.+.+.|..
T Consensus 150 ~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 150 LADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 012445666668999999998888744
No 75
>PRK14526 adenylate kinase; Provisional
Probab=99.39 E-value=2.8e-12 Score=117.48 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----c---CChhHHHHHHHHHHHhhhCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----E---DRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~ 111 (433)
|.|+|+|+|||||||+++.|++.+|+.+++++++...........|...+. - ........+.+.+.... ...
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~-~~~ 79 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK-NND 79 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc-ccC
Confidence 468999999999999999999999999999999865321111111111100 0 00111122233332221 245
Q ss_pred cEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------CCC
Q psy16778 112 TGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEH-------------------------------FMP 159 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~-------------------------------~~~ 159 (433)
++|+++.+......+.+.+..+ ..+++|.+|.+++.+|+..|.-. ...
T Consensus 80 g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 80 NFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred cEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 7899888777777777776543 56888999999999999988521 112
Q ss_pred HHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 160 ADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 160 ~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.+.+...++.|+. .|. ...-.+.||.+.+++++.++|...+.+
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~-~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYS-KCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 4455555554443 121 222457888889999999999887755
No 76
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.38 E-value=4.4e-12 Score=117.52 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cC----ChhHHHHHHHHHHHh-h
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---ED----RRPWLNNINRIIHQL-N 107 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~-~ 107 (433)
+.++.|+|+|+|||||||+++.|++++|++++++|++.+.........|...+. .. .......+.+.+... .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence 455789999999999999999999999999999999985432111111100000 00 112223333334332 1
Q ss_pred hCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
....++|+++.+.+......+.+... ..+++|+++.+++++|+..|.
T Consensus 84 ~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 84 DCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred ccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 23457899988777777777765444 689999999999999999885
No 77
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=6.9e-12 Score=111.96 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCCh----------------------h
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR----------------------P 94 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 94 (433)
+.++|+|-||+||||||+++.||++||+.|+|++.+++......+..+..+.+.... .
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 348999999999999999999999999999999988754433333333333221000 0
Q ss_pred ---HHH---------------HHHHH----HHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH-H
Q psy16778 95 ---WLN---------------NINRI----IHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL-Q 151 (433)
Q Consensus 95 ---~~~---------------~~~~~----~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl-~ 151 (433)
.++ .+.+. ...+...+.++|+++--.-- -.+.+. .+.+||++|++++.+|= .
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT---vV~PdA--~lKiFLtAS~e~RA~RR~~ 157 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT---VVFPDA--ELKIFLTASPEERAERRYK 157 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc---eECCCC--CeEEEEeCCHHHHHHHHHH
Confidence 000 00111 11111222334444311000 001111 48999999999988773 3
Q ss_pred HhhCC--CCCHHhHHHHHhhccCCCC-------CCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778 152 KRAEH--FMPADLLESQFQTLEEPDP-------LVEPDVRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 152 ~R~~~--~~~~~~l~~~~~~~~~~~~-------~~~~~~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
+.... ....+.+...+..++..+. ..+.+.+.||++ .+++|+++.|...+.
T Consensus 158 q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 158 QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 33211 1113444444444443221 145688999998 999999999987654
No 78
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.37 E-value=4.1e-12 Score=117.27 Aligned_cols=163 Identities=8% Similarity=0.057 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---CCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---DNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~ 112 (433)
+.|+|+|+|||||||+++.|++++|+.+++++++.+.........+..... ......-+.+...+...+. ...+
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 469999999999999999999999999999988864321111000100000 0000111122223332222 2347
Q ss_pred EEEEcCcccHHHHHHH----HhcC-C-eEEEEEEcCHHHHHHHHHHhhCCC-----------------------------
Q psy16778 113 GVLVCSALRRNYRDII----RNNN-R-VVFIYLKAEFGVILSRLQKRAEHF----------------------------- 157 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l----~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~----------------------------- 157 (433)
+||++.+......+.+ ...+ . ..+|+|+++.+++.+|+.+|...+
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 9999877666555555 3222 2 589999999999999999885211
Q ss_pred --CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 158 --MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 158 --~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
...+.+...+..+.. .|. ...-.+.||.+.+++++...+...+.
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~-~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYK-KKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHH-hCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 123344444444332 121 11236778888999999998877654
No 79
>PRK04182 cytidylate kinase; Provisional
Probab=99.36 E-value=2.3e-12 Score=115.29 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-----EDRRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
|+|+|+|++||||||+++.|++++|++++|.|++..... ...|..... .........++..+......+.++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA---KERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH---HHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCE
Confidence 589999999999999999999999999999876543211 011221110 000111122333333333244467
Q ss_pred EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHH--hHHHH----HhhccCCC----CCCCCCeEE
Q psy16778 114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD--LLESQ----FQTLEEPD----PLVEPDVRT 183 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~--~l~~~----~~~~~~~~----~~~~~~~~~ 183 (433)
|+++.... + .+.... .++|||++|++++.+|+..|.+.+.... .+... ...+...+ .+.+.++++
T Consensus 78 Vi~g~~~~--~--~~~~~~-~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~ 152 (180)
T PRK04182 78 VLEGRLAG--W--MAKDYA-DLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLV 152 (180)
T ss_pred EEEEeecc--e--EecCCC-CEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence 77653210 0 111111 4789999999999999998864332211 11111 01111110 012357899
Q ss_pred EccC-CCHHHHHHHHhcCCCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l~~ 203 (433)
||++ .+++++++.|...+..
T Consensus 153 idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 153 INTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred EECCCCCHHHHHHHHHHHHHH
Confidence 9998 8999999988776643
No 80
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=3.3e-12 Score=115.82 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc------c----------ccC----------CCCCCcCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK------M----------SAK----------QPLNDEDR 92 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~------~----------~~~----------~~~~~~~~ 92 (433)
++|+|+|++||||||+++.|++.+|++++|.|.+.......+ + ..| ..|.++..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999998853211000 0 001 11222211
Q ss_pred hhHHHHHHHHHH--------Hhhh--CCCcEE-EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHH
Q psy16778 93 RPWLNNINRIIH--------QLNV--DNLTGV-LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD 161 (433)
Q Consensus 93 ~~~~~~~~~~~~--------~~~~--~~~~~V-i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~ 161 (433)
. ..+++++. ..+. ....+| ++..-+.+.. +.+.. +.+|+++||.+++.+|+.+|.+ ...+
T Consensus 82 ~---~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~---~~~~~-D~ii~V~a~~e~r~~Rl~~R~g--~s~e 152 (195)
T PRK14730 82 R---RWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAK---LTDLC-SEIWVVDCSPEQQLQRLIKRDG--LTEE 152 (195)
T ss_pred H---HHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcc---hHhCC-CEEEEEECCHHHHHHHHHHcCC--CCHH
Confidence 1 22222221 1111 122344 4443333322 12222 4799999999999999999964 2333
Q ss_pred hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+................++++|+++.+.+++..++.+.+
T Consensus 153 ~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 153 EAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred HHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 3333333332211113458899999999999999887553
No 81
>PRK14529 adenylate kinase; Provisional
Probab=99.35 E-value=9.7e-12 Score=114.32 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh--CCCcE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV--DNLTG 113 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~ 113 (433)
|.|+|.|+|||||||+++.|++++++.++++.++.+.........+..++. ......-+.+-..+...+. ...++
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 469999999999999999999999999999888875422111111110000 0111111222222322221 14679
Q ss_pred EEEcCcccHHHHHHHHh----c-CC-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------
Q psy16778 114 VLVCSALRRNYRDIIRN----N-NR-VVFIYLKAEFGVILSRLQKRAEH------------------------------- 156 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~----~-~~-~~vv~L~~~~e~l~~Rl~~R~~~------------------------------- 156 (433)
|+|+.+.+....+.|.+ . .. ..+|+|++|.+++.+|+..|.-.
T Consensus 81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~ 160 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST 160 (223)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence 99998877766665543 2 12 68999999999999999988411
Q ss_pred -CCC--HHhHHHHHhhccCC--------CCCC------CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 157 -FMP--ADLLESQFQTLEEP--------DPLV------EPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 157 -~~~--~~~l~~~~~~~~~~--------~~~~------~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+ .+.+..++..|++. .+|+ +.-.+.||...+++++.+.|.+.+
T Consensus 161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 111 34555555555431 0123 234677777788888888876654
No 82
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.35 E-value=1.1e-11 Score=117.02 Aligned_cols=154 Identities=18% Similarity=0.330 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-HHHHHHHHhhhCCCcE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-NINRIIHQLNVDNLTG 113 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 113 (433)
.|+|+|+|||||||+++.|++.+ | +.+++.|.+..... .+.. ......+ .....+...+..+..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~--------~~~~-~~e~~~~~~~~~~i~~~l~~~~~V 71 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP--------VWKE-KYEEFIRDSTLYLIKTALKNKYSV 71 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH--------HhhH-HhHHHHHHHHHHHHHHHHhCCCeE
Confidence 48999999999999999999987 2 45666666532110 0011 1112222 2334556666677777
Q ss_pred EEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC--CCCCeEEEcc
Q psy16778 114 VLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL--VEPDVRTVSV 186 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~Id~ 186 (433)
|++.+.....++..+. .... ..+||+++|.+++.+|..+|+. ..+.+.+...+..++++... .+...++|++
T Consensus 72 I~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~ 150 (249)
T TIGR03574 72 IVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT 150 (249)
T ss_pred EEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-CCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence 8887765555544333 3322 6789999999999999998863 45566777888877766431 2458899998
Q ss_pred CC--CHHHHHHHHhcCCCC
Q psy16778 187 NE--PLEGIVSKSAIMPPT 203 (433)
Q Consensus 187 ~~--~~ee~~~~i~~~l~~ 203 (433)
+. +++++.+.|...+..
T Consensus 151 ~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 151 TKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 73 778999988876543
No 83
>PRK01184 hypothetical protein; Provisional
Probab=99.34 E-value=1.3e-11 Score=111.07 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-cCChhHH--------HHHHHHHHHhhh-
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-EDRRPWL--------NNINRIIHQLNV- 108 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~- 108 (433)
++|+|+|+|||||||+++ +++.+|+++++++++...... ..+..... ..+.... ..+...+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVK---KRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHH---HcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 589999999999999998 677899999998776543210 11211100 0000000 011112222222
Q ss_pred -CCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhhccCC--CCCCCCCe
Q psy16778 109 -DNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQTLEEP--DPLVEPDV 181 (433)
Q Consensus 109 -~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~~~~~--~~~~~~~~ 181 (433)
.+..+|++.. ......+.+++..+ +.+|++++|.+++.+|+.+|.... ...+.+..+......+ ....+.++
T Consensus 78 ~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad 156 (184)
T PRK01184 78 KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALAD 156 (184)
T ss_pred cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcC
Confidence 2345666654 34444555544322 589999999999999999886321 1233344333332111 00123488
Q ss_pred EEEccCCCHHHHHHHHhcCC
Q psy16778 182 RTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 182 ~~Id~~~~~ee~~~~i~~~l 201 (433)
++|+++.+.+++..++.+.+
T Consensus 157 ~vI~N~~~~~~l~~~v~~~~ 176 (184)
T PRK01184 157 YMIVNDSTLEEFRARVRKLL 176 (184)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 99998899999998887654
No 84
>PRK14528 adenylate kinase; Provisional
Probab=99.34 E-value=9.7e-12 Score=112.05 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC---CCCcCChhHHHHHHHHHHHhhh---CCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP---LNDEDRRPWLNNINRIIHQLNV---DNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~ 112 (433)
+.|+|+|+|||||||+++.|++.+|+++++++++...........|.. +-.......-..+...+...+. ...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 578999999999999999999999999999999864321111110000 0000000000111122222221 2346
Q ss_pred EEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhh---CC-CCCHHhHHHHHhhccCCCC-----C-
Q psy16778 113 GVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRA---EH-FMPADLLESQFQTLEEPDP-----L- 176 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~---~~-~~~~~~l~~~~~~~~~~~~-----~- 176 (433)
+||++.+.+....+.+.+ .+ . ..+|+|++|.+++.+|+..|. ++ ....+.+...+..|..... |
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899887655554444332 11 2 689999999999999999884 22 2345566666555443111 1
Q ss_pred CCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 177 VEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 177 ~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
...-.+.|+.+.+++++...+...
T Consensus 162 ~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHh
Confidence 223568888889999999888654
No 85
>PRK08356 hypothetical protein; Provisional
Probab=99.33 E-value=4.1e-11 Score=108.92 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----------cCChhHHHHHH-------
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----------EDRRPWLNNIN------- 100 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------- 100 (433)
.++|+|+|+|||||||+++.|++ +|+.+++.++......... ...+.|.. .....+-..+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHN-VSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCccccccccc-ccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 47899999999999999999965 8999999887542211010 01111100 00000000111
Q ss_pred --HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC----CHHhHHHHHhhccCCC
Q psy16778 101 --RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM----PADLLESQFQTLEEPD 174 (433)
Q Consensus 101 --~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~l~~~~~~~~~~~ 174 (433)
..+.........++|++ .......+.+++.. ..+|||+++.+++.+|+..|..... ..+.+.+........+
T Consensus 83 ~~~~~~~~~~~~~~ividG-~r~~~q~~~l~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~ 160 (195)
T PRK08356 83 LIRLAVDKKRNCKNIAIDG-VRSRGEVEAIKRMG-GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLY 160 (195)
T ss_pred HHHHHHHHhccCCeEEEcC-cCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhh
Confidence 11222222333456664 46666666776642 3799999999999999998864311 2222222221111111
Q ss_pred ---CCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 175 ---PLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 175 ---~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+.+.++++|+++.+.+++..++.+.+
T Consensus 161 ~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~ 190 (195)
T PRK08356 161 HTTKLKDKADFVIVNEGTLEELRKKVEEIL 190 (195)
T ss_pred hhhhHHHhCcEEEECCCCHHHHHHHHHHHH
Confidence 112458888888899999998887654
No 86
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.8e-12 Score=118.56 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=102.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
.++++++++.|+. .+++.+.++++.+|+++.|+|+|||||||+.+++|+.. |...+++..+..+
T Consensus 3 ~l~i~~v~~~f~~----------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-- 70 (248)
T COG1116 3 LLEIEGVSKSFGG----------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-- 70 (248)
T ss_pred eEEEEeeEEEeCc----------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC--
Confidence 5789999999987 45788888999999999999999999999999999965 7778888877332
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.-..++.||++...+|.+..+|+...+...+.+ .....+...+.+...+ +.=|-+.-|..+...++||-
T Consensus 71 --~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~----~~e~~~~a~~~L~~Vg--L~~~~~~~P~qLSGGMrQRV 139 (248)
T COG1116 71 --GPDIGYVFQEDALLPWLTVLDNVALGLELRGKS----KAEARERAKELLELVG--LAGFEDKYPHQLSGGMRQRV 139 (248)
T ss_pred --CCCEEEEeccCcccchhhHHhhheehhhccccc----hHhHHHHHHHHHHHcC--CcchhhcCccccChHHHHHH
Confidence 235689999999999999999998887655411 1111123344555443 45566778899999999886
No 87
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.31 E-value=2e-11 Score=108.65 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC-----CCCCc--CChhHHHHHHHHHHHhhhCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ-----PLNDE--DRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~ 111 (433)
+.|+|+|+|||||||+|+.|+++++++|+|++++.+.........+. ..+.. ..+.....+...+...-...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~- 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA- 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-
Confidence 57999999999999999999999999999999987543322211110 00110 00111122333333321122
Q ss_pred cEEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhhC-CCCCHHhHHHHHhhccCCCC----CCCCC
Q psy16778 112 TGVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRAE-HFMPADLLESQFQTLEEPDP----LVEPD 180 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~~-~~~~~~~l~~~~~~~~~~~~----~~~~~ 180 (433)
++|+++.+...+..+.++ +.+ . ..++.+..+.+.++.|+..|.. .....+.+...+..++.... +..
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~-- 157 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS-- 157 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe--
Confidence 688888876655544444 322 3 7899999999999999998852 22334455555444443211 121
Q ss_pred eEEEccCCCHHHHHHHHhcCC
Q psy16778 181 VRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 181 ~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.|+...+++++.+.+.+.+
T Consensus 158 -~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 -VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred -eeccCCCCHHHHHHHHHHhh
Confidence 67788899999998887653
No 88
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.31 E-value=1.5e-11 Score=105.95 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
|+|+|||.||+||||+++.|+ ++|+.+++..++.... +.-.+++-.........+.+...+...+. ..++||+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~~~de~r~s~~vD~d~~~~~le~~~~-~~~~Ivd~H 75 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYTEYDELRKSVIVDVDKLRKRLEELLR-EGSGIVDSH 75 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc---CCeeccCCccceEEeeHHHHHHHHHHHhc-cCCeEeech
Confidence 689999999999999999999 7999999988875432 11222221111222223344444444432 235666432
Q ss_pred cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH---------H-hhccCCCCCCCCCeEEEccC-
Q psy16778 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ---------F-QTLEEPDPLVEPDVRTVSVN- 187 (433)
Q Consensus 119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~---------~-~~~~~~~~~~~~~~~~Id~~- 187 (433)
+...+... .+||.|+++++.|.+||+.|+ ++.+.+..+ + +..+.+ .+.+.|+++
T Consensus 76 -----~~hl~~~~--dlVvVLR~~p~~L~~RLk~RG---y~~eKI~ENveAEi~~vi~~EA~E~~-----~~v~evdtt~ 140 (180)
T COG1936 76 -----LSHLLPDC--DLVVVLRADPEVLYERLKGRG---YSEEKILENVEAEILDVILIEAVERF-----EAVIEVDTTN 140 (180)
T ss_pred -----hhhcCCCC--CEEEEEcCCHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHHhc-----CceEEEECCC
Confidence 11122212 589999999999999999997 332222222 1 222222 278999998
Q ss_pred CCHHHHHHHHhcCCC
Q psy16778 188 EPLEGIVSKSAIMPP 202 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~ 202 (433)
.+++++.+.|.+.+.
T Consensus 141 ~s~ee~~~~i~~ii~ 155 (180)
T COG1936 141 RSPEEVAEEIIDIIG 155 (180)
T ss_pred CCHHHHHHHHHHHHc
Confidence 999999999988876
No 89
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.30 E-value=8.4e-12 Score=113.25 Aligned_cols=156 Identities=20% Similarity=0.172 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc------c--ccCC-C----------------CCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK------M--SAKQ-P----------------LNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~------~--~~~~-~----------------~~~~~~~ 93 (433)
.+|+|+|++||||||+++.|++ +|++++|.|.+........ + ..|. . |+++...
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5899999999999999999998 8999999998853311000 0 0011 1 1111111
Q ss_pred hHHHH-----HHHHHHHhhhCC---CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778 94 PWLNN-----INRIIHQLNVDN---LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES 165 (433)
Q Consensus 94 ~~~~~-----~~~~~~~~~~~~---~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~ 165 (433)
.+++. +...+....... ..+|++..-+.+.. +.+.. +.+|++++|++++.+|+.+|.+ ...+.+..
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~---~~~~~-D~vi~V~a~~e~~~~Rl~~R~~--~s~e~~~~ 155 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENG---LEKLV-DRVLVVDAPPETQLERLMARDG--LSEEEAEA 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCC---chhhC-CeEEEEECCHHHHHHHHHHcCC--CCHHHHHH
Confidence 11111 111122222211 23444443333321 11111 4799999999999999999864 22233333
Q ss_pred HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
....+.........++++|+++.+++++..++.+.+
T Consensus 156 ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~ 191 (194)
T PRK00081 156 IIASQMPREEKLARADDVIDNNGDLEELRKQVERLL 191 (194)
T ss_pred HHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 322222211112347899999999999998887553
No 90
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=1.8e-11 Score=111.11 Aligned_cols=162 Identities=16% Similarity=0.112 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc-----ccc--ccCC----------------CCCCcCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-----DKM--SAKQ----------------PLNDEDR 92 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~-----~~~--~~~~----------------~~~~~~~ 92 (433)
..+.+|+|||.+||||||+++.|++.+|+.++|.|.+...... ..+ ..|. .|+++..
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 3457899999999999999999999899999999988532110 000 0011 1222111
Q ss_pred hhHHH-----HHHHHHHHhhh-CCCcE-EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778 93 RPWLN-----NINRIIHQLNV-DNLTG-VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES 165 (433)
Q Consensus 93 ~~~~~-----~~~~~~~~~~~-~~~~~-Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~ 165 (433)
...++ .+...+..... .+..+ |++..-+.+.... ..... +.+++++||.+++.+|+.+|.+. ..+....
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~~~-D~vi~V~a~~e~ri~Rl~~Rd~~--s~~~a~~ 159 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFR-HYDYL-KKVIVIKADLETRIRRLMERDGK--NRQQAVA 159 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCc-hhhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHH
Confidence 11111 11111222222 22234 4444333332110 01111 47999999999999999999653 3333333
Q ss_pred HHhhccCCCCCCCCCeEEEccCC-CHHHHHHHHhcCC
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVNE-PLEGIVSKSAIMP 201 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~~-~~ee~~~~i~~~l 201 (433)
....+.......+.++++|+++. +.+++..++...+
T Consensus 160 ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~ 196 (204)
T PRK14733 160 FINLQISDKEREKIADFVIDNTELTDQELESKLITTI 196 (204)
T ss_pred HHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHH
Confidence 33222221111334889999998 9999998887544
No 91
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.29 E-value=1.1e-11 Score=109.88 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-----EDRRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
++|+|+|++||||||+++.|++.+|+++++.|++...... ..|..... .........+...+......+..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 77 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA---KMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNV 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH---HcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCE
Confidence 5799999999999999999999999999999876432110 11211110 000111122333344444344567
Q ss_pred EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHH----HhhccCCCC----CCCCCeEE
Q psy16778 114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQ----FQTLEEPDP----LVEPDVRT 183 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~----~~~~~~~~~----~~~~~~~~ 183 (433)
||++.... + .+.... .++|||++|++++.+|+.+|.+.... ...+..+ .+.+...+. ....-+++
T Consensus 78 Vi~g~~~~--~--~~~~~~-d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~ 152 (171)
T TIGR02173 78 VLESRLAG--W--IVREYA-DVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLV 152 (171)
T ss_pred EEEecccc--e--eecCCc-CEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence 77654311 1 112212 47899999999999999998753221 1111111 111111111 12335799
Q ss_pred EccC-CCHHHHHHHHhcCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l 201 (433)
||++ .++++ ++.|.+.+
T Consensus 153 i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 153 INTSNWDPNN-VDIILDAL 170 (171)
T ss_pred EECCCCCHHH-HHHHHHHh
Confidence 9999 99999 99887653
No 92
>COG0645 Predicted kinase [General function prediction only]
Probab=99.29 E-value=5.9e-11 Score=102.25 Aligned_cols=136 Identities=23% Similarity=0.198 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc----cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV 114 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 114 (433)
+.+++.|.||+||||+++.|++.+|..+|.+|.+...... .... .-.+........|..+......++..|.++|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~-~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGP-AGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCC-CCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 5788999999999999999999999999999998643221 0111 1123333444556666777778889999999
Q ss_pred EEcCcccHHHHHHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCCCC--CHHhHHHHHhhccCCCC
Q psy16778 115 LVCSALRRNYRDIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEHFM--PADLLESQFQTLEEPDP 175 (433)
Q Consensus 115 i~~~~~~~~~~~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~~l~~~~~~~~~~~~ 175 (433)
+|.+...+..|+....... +..|++.++.+++..|+.+|.+... ....+..+....+.+..
T Consensus 81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence 9999988888776666543 6779999999999999999987444 35567777777777653
No 93
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.29 E-value=1.9e-11 Score=130.26 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=113.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
..++.+|+++|++||||||+++.|++++ +..+++.|.++... ..+..+..+....+++.+.+.......+
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l-----~~~~~~~~~~r~~~~~~l~~~a~~~~~~ 531 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL-----NRDLGFSDADRVENIRRVAEVARLMADA 531 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc-----CCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999999999999999997 45889999986432 2345566666677777777777777788
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
|..+|+++......+|+.+++... +.+|||+++.+++.+|. .| +.... .+.+...+. ...+|+.-+.++++|
T Consensus 532 G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r-~L~~~~~~~~l~~l~~-~r~~y~~P~~a~~~I 608 (632)
T PRK05506 532 GLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK-GLYAKARAGEIKNFTG-IDSPYEAPENPELRL 608 (632)
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc-chhhhccccccccccc-cccCCCCCCCCeEEE
Confidence 888899988877888888886542 68999999999999994 22 22111 111221111 112221003478999
Q ss_pred ccC-CCHHHHHHHHhcCCC
Q psy16778 185 SVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 185 d~~-~~~ee~~~~i~~~l~ 202 (433)
+++ .+++++++.|.+.+.
T Consensus 609 d~~~~s~~e~v~~Ii~~l~ 627 (632)
T PRK05506 609 DTTGRSPEELAEQVLELLR 627 (632)
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 996 899999999887663
No 94
>KOG3079|consensus
Probab=99.29 E-value=3.4e-11 Score=104.56 Aligned_cols=170 Identities=9% Similarity=0.120 Sum_probs=109.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc-ccccCCCCCC---cC----ChhHHHHHHHHHH
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID-KMSAKQPLND---ED----RRPWLNNINRIIH 104 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~~~~~ 104 (433)
...+++.+|++.|.|||||-|+...+++++|+.|++++++.+..... +...|..+++ .. .......+++.+.
T Consensus 3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~ 82 (195)
T KOG3079|consen 3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR 82 (195)
T ss_pred CcccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999997543221 1111111111 00 1111223333333
Q ss_pred HhhhCCCcEEEEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC----CCCHHhHHHHHhhccCCCC--
Q psy16778 105 QLNVDNLTGVLVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH----FMPADLLESQFQTLEEPDP-- 175 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~----~~~~~~l~~~~~~~~~~~~-- 175 (433)
.....+ +++|++.+........+.... . .+++|++|+.+++.+|+..|+.. ....+.++.+++.+.....
T Consensus 83 ~~~~~~-~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv 161 (195)
T KOG3079|consen 83 SSGDSN-GFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV 161 (195)
T ss_pred hcCCCC-eEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence 333222 388888887776665555433 2 68999999999999999999743 2234555555544432111
Q ss_pred ----CCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 176 ----LVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 176 ----~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
..+.....|+.+.+++++...+...+..
T Consensus 162 i~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 162 IEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 1223566888889999999988777654
No 95
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.27 E-value=2.3e-10 Score=102.48 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC----eEEeCCCCCccccccccccCCCCCCcCChhHHH----------------
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV----KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---------------- 97 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~----~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 97 (433)
+.+|+|+|+|||||||+++.|+..++. .++..+...... ..|..+.......+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS-----AGGENHIALSTEEFDHREDGGAFALSWQAHGL 75 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC-----CCCccccccCHHHHHHHHHCCCEEEEEeecCc
Confidence 468999999999999999999998743 232221111000 0000000000000000
Q ss_pred --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCC
Q psy16778 98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPD 174 (433)
Q Consensus 98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~ 174 (433)
.....+...+.++..+|++++.. ....+++... ..+|||+++.+++.+|+.+|.+ +. .+.+...+.......
T Consensus 76 ~~g~~~~i~~~~~~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~-~~-~~~~~~rl~~~~~~~ 150 (179)
T TIGR02322 76 SYGIPAEIDQWLEAGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGR-ES-REEIEERLARSARFA 150 (179)
T ss_pred cccChHHHHHHHhcCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC-CC-HHHHHHHHHHHhhcc
Confidence 01112333445666666666532 2233333222 5799999999999999998864 22 233333333222211
Q ss_pred CCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 175 PLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 175 ~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
....+.++++++.+++++..+|.+.+.+
T Consensus 151 -~~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 151 -AAPADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred -cccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 0122444477778999999999887643
No 96
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.27 E-value=1.1e-11 Score=112.05 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=88.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC-----------------CCCCCcCChh
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK-----------------QPLNDEDRRP 94 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~-----------------~~~~~~~~~~ 94 (433)
+|+|+|.+||||||+++.|++..|++++|.|.+...... ..+ ..| ..|.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999767999999988422100 000 001 1122221111
Q ss_pred HHH---------HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778 95 WLN---------NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES 165 (433)
Q Consensus 95 ~~~---------~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~ 165 (433)
.++ .+...+......+..+|++..-+.+. .+.... ..+++++++.+++.+|+.+|.+ ...+.+..
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~---~~~~~~-D~vv~V~~~~~~~~~Rl~~R~~--~s~~~~~~ 154 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN---KLRSLC-DRVIVVDVSPQLQLERLMQRDN--LTEEEVQK 154 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC---CcHHhC-CEEEEEECCHHHHHHHHHHcCC--CCHHHHHH
Confidence 111 11122222222222344433322221 122222 4789999999999999999974 22344444
Q ss_pred HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHh
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSA 198 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~ 198 (433)
.+..+.........++++|+++.+++++..++.
T Consensus 155 r~~~q~~~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 155 RLASQMDIEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHhcCCHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 444443322223348899999999999998874
No 97
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.26 E-value=4.5e-12 Score=112.97 Aligned_cols=97 Identities=22% Similarity=0.193 Sum_probs=80.5
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
+++++.||++.||. ...+++.++++.+|.+++|+|||||||||+.|.|...- |...++++.+....
T Consensus 1 ~mi~i~~l~K~fg~----------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~ 70 (240)
T COG1126 1 MMIEIKNLSKSFGD----------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK 70 (240)
T ss_pred CeEEEEeeeEEeCC----------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh
Confidence 47899999999998 56888889999999999999999999999999999743 78888886654221
Q ss_pred cc--cccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 77 NI--DKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 77 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.. .+...|+.||..+.++.++.++++.....
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 11 23456999999999999999999987654
No 98
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.26 E-value=1.7e-11 Score=111.11 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---CCCcE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---DNLTG 113 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~ 113 (433)
+|+|+|+|||||||+++.|++++|+.+++.|++.+.........+..+.. ......-..+...+...+. .+.++
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 38999999999999999999999999999998864321110000000000 0000001122233333333 24678
Q ss_pred EEEcCcccHHHHHHHHhcC----C-eEEEEEEcCHHHHHHHHHHhhC
Q psy16778 114 VLVCSALRRNYRDIIRNNN----R-VVFIYLKAEFGVILSRLQKRAE 155 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~----~-~~vv~L~~~~e~l~~Rl~~R~~ 155 (433)
|+++.+......+.+.+.. . ..+|+|++|.+++.+|+.+|..
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 9998765555544444322 2 6899999999999999999863
No 99
>PRK08233 hypothetical protein; Provisional
Probab=99.26 E-value=7.3e-11 Score=105.71 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CeEEeCCCCCccccc---c-ccccCCCCCCcCChhHHHHHHHHHHHhhhCC-
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG-VKFIDGDHLHPQSNI---D-KMSAKQPLNDEDRRPWLNNINRIIHQLNVDN- 110 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg-~~~id~D~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 110 (433)
++.+|+|+|++||||||+++.|++.++ ...+..|.+...... . -...+..+ ....++.+.+.+..+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ 77 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY----SEWVLTPLIKDIQELIAKSN 77 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh----hhhhhHHHHHHHHHHHcCCC
Confidence 468999999999999999999999995 444445544321100 0 00111111 1112233333344433222
Q ss_pred CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhh----cc---CCCCCCCC
Q psy16778 111 LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQT----LE---EPDPLVEP 179 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~----~~---~~~~~~~~ 179 (433)
..+||..+.......+ +.... ..+|||++|.+++.+|..+|...... ...+...+.. +. ... ...
T Consensus 78 ~~~vivd~~~~~~~~~-~~~~~-d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~ 153 (182)
T PRK08233 78 VDYIIVDYPFAYLNSE-MRQFI-DVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV--KPN 153 (182)
T ss_pred ceEEEEeeehhhccHH-HHHHc-CEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC--ccC
Confidence 2455544432222222 22222 48999999999999998777421111 1112222211 11 111 224
Q ss_pred CeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 180 DVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 180 ~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
++++|+++.+++++..++...+.+
T Consensus 154 ~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 154 ADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred CeEEEcCCCCHHHHHHHHHHHHHh
Confidence 678899889999999999887654
No 100
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.23 E-value=4e-11 Score=111.75 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------cccc--cC-----------------CCCCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKMS--AK-----------------QPLNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~~--~~-----------------~~~~~~~~~ 93 (433)
.+|+|||.+||||||+++.|.+++|++++|.|.+..+... ..+. .| ..|.++...
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999889999999988432100 0000 01 112222111
Q ss_pred hHHHHHHHHHHH--------hh-------------hCCC-cEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH
Q psy16778 94 PWLNNINRIIHQ--------LN-------------VDNL-TGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ 151 (433)
Q Consensus 94 ~~~~~~~~~~~~--------~~-------------~~~~-~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~ 151 (433)
. .++.+++. .. ..+. .+|++..-+.+... ..... +.+|++++|.+++.+|+.
T Consensus 82 ~---~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~--~~~~~-D~iv~V~a~~e~ri~RL~ 155 (244)
T PTZ00451 82 R---ALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKT--FTYFV-SASVVVSCSEERQIERLR 155 (244)
T ss_pred H---HHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCc--hhhcC-CeEEEEECCHHHHHHHHH
Confidence 1 12221111 11 1222 34444443433211 11111 479999999999999999
Q ss_pred HhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC--CCHHHHHHHHhcCC
Q psy16778 152 KRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN--EPLEGIVSKSAIMP 201 (433)
Q Consensus 152 ~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~--~~~ee~~~~i~~~l 201 (433)
+|.+ ...+.+......+.......+.++++|+|+ .+.+++..++.+.+
T Consensus 156 ~R~g--~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~ 205 (244)
T PTZ00451 156 KRNG--FSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCV 205 (244)
T ss_pred HcCC--CCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHH
Confidence 9964 233333333333222221234588999999 99999998887543
No 101
>PLN02422 dephospho-CoA kinase
Probab=99.23 E-value=5.8e-11 Score=109.65 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC-----------------CCCCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK-----------------QPLNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~-----------------~~~~~~~~~ 93 (433)
++|+|||.+||||||+++.|++ +|++++|+|.+...... ..+ ..| ..|+++..
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~- 79 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK- 79 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH-
Confidence 3799999999999999999994 89999999988432100 000 001 11222211
Q ss_pred hHHHHHHHHHHHh------------hhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH
Q psy16778 94 PWLNNINRIIHQL------------NVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA 160 (433)
Q Consensus 94 ~~~~~~~~~~~~~------------~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~ 160 (433)
...++++++.. ...+..+|+...+ +.+...+.. . +.++++++|++++.+|+.+|.+ ...
T Consensus 80 --~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~---~-D~vI~V~a~~e~ri~RL~~R~g--~s~ 151 (232)
T PLN02422 80 --RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKW---T-KPVVVVWVDPETQLERLMARDG--LSE 151 (232)
T ss_pred --HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhh---C-CEEEEEECCHHHHHHHHHHcCC--CCH
Confidence 12222222211 1123344444333 333221111 1 4799999999999999999964 233
Q ss_pred HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+.+......+.......+.++++|+|+.+.+++..++.+.+.
T Consensus 152 eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 152 EQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred HHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHH
Confidence 334333333332211144588999999999999888876653
No 102
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.23 E-value=1.7e-11 Score=110.89 Aligned_cols=151 Identities=22% Similarity=0.197 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc--------cccccCCCCCCcCC--------------hhH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI--------DKMSAKQPLNDEDR--------------RPW 95 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~--------~~~~~~~~~~~~~~--------------~~~ 95 (433)
.++|+|||.+||||||+++.+++ +|++++|+|.+..+... .....|..+-++++ ...
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999999 99999999988642100 01112322221111 011
Q ss_pred HHHHHHHHHHhhhC---------CCcEEEEcCcccHHHHHHHHhcCC----eEEEEEEcCHHHHHHHHHHhhCCCCCHH-
Q psy16778 96 LNNINRIIHQLNVD---------NLTGVLVCSALRRNYRDIIRNNNR----VVFIYLKAEFGVILSRLQKRAEHFMPAD- 161 (433)
Q Consensus 96 ~~~~~~~~~~~~~~---------~~~~Vi~~~~~~~~~~~~l~~~~~----~~vv~L~~~~e~l~~Rl~~R~~~~~~~~- 161 (433)
...++++...+... ..++++..- ..|.+... +.||+++||++++++|+.+|.+ ...+
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~ei-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~--~~~e~ 151 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEI-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG--LDEED 151 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEc-------hHHHhccccccCCEEEEEECCHHHHHHHHHhcCC--CCHHH
Confidence 11222222221111 111222222 12222211 3799999999999999999973 2222
Q ss_pred ---hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 162 ---LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 162 ---~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
.+..+....+.+. .++++++++.+++++.+++.+.+.
T Consensus 152 ~~~~~~~Q~~~~ek~~----~ad~vi~n~~~i~~l~~~i~~~~~ 191 (201)
T COG0237 152 AEARLASQRDLEEKLA----LADVVIDNDGSIENLLEQIEKLLK 191 (201)
T ss_pred HHHHHHhcCCHHHHHh----hcCChhhcCCCHHHHHHHHHHHHH
Confidence 3334444444433 388999999999998888876654
No 103
>KOG3347|consensus
Probab=99.22 E-value=9.7e-11 Score=98.00 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
...+.|+|+|.||+||||++..||+.+|+.+|...++.+.... ..|++-...-..-.-+.+-+.+...+..| ++||
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l---~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IV 80 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL---YEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIV 80 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc---hhcccccccCccccHHHHHHHHHHHHhcC-CcEE
Confidence 3457899999999999999999999999999999998755322 22333222211222234445555555555 6888
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
+..+ ..+.|. .+||.|+++.++|.+||..|+
T Consensus 81 DyHgCd~Fperwf--------dlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 81 DYHGCDFFPERWF--------DLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred eecccCccchhhe--------eEEEEEecCchHHHHHHHHcC
Confidence 8543 323221 378999999999999999986
No 104
>KOG0635|consensus
Probab=99.22 E-value=8.1e-11 Score=98.43 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
..+|..|+|+|.|||||||+|-.|++.| |. ..+|+|+++.. +.....|..+...+..+++.++.+-+...
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhG-----LN~DL~F~a~dR~ENIRRigeVaKLFADa 102 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHG-----LNKDLGFKAEDRNENIRRIGEVAKLFADA 102 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccc-----cccccCcchhhhhhhHHHHHHHHHHHhcc
Confidence 4688999999999999999999999988 43 36899998643 34566777777888888988888877777
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCCCC
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVEPD 180 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (433)
+-.+|-+.-...+..|+..++..+ ++.||+++|.+++..|- .+|.+.... +.-.+.||.--..+
T Consensus 103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKg-------FTGIddPYEaP~~c 175 (207)
T KOG0635|consen 103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKG-------FTGIDDPYEAPLNC 175 (207)
T ss_pred ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccc-------cccCCCcccCCCCc
Confidence 644444433333444555555433 88999999999988773 112211111 11223343211126
Q ss_pred eEEEccC--CCHHHHHHHHhcCCCC
Q psy16778 181 VRTVSVN--EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 181 ~~~Id~~--~~~ee~~~~i~~~l~~ 203 (433)
.+++... .+++++++.|...|..
T Consensus 176 Ei~l~~~~~~sp~~mae~iv~YL~~ 200 (207)
T KOG0635|consen 176 EIVLKSHESSSPEEMAEIIVSYLDN 200 (207)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhh
Confidence 6777765 6677799988877654
No 105
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=1.3e-10 Score=102.58 Aligned_cols=149 Identities=21% Similarity=0.347 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEe--CCCCCccccccccccCCCCCCcCChhH-HHHHHHHHHHhhhCCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFID--GDHLHPQSNIDKMSAKQPLNDEDRRPW-LNNINRIIHQLNVDNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id--~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 112 (433)
+.|+++|+|||||||+|+.|++.| ++..++ .|-...- .-....+...+..... ....+..+...+. +.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i----~~DEslpi~ke~yres~~ks~~rlldSalk-n~~ 76 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGI----LWDESLPILKEVYRESFLKSVERLLDSALK-NYL 76 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhe----ecccccchHHHHHHHHHHHHHHHHHHHHhc-ceE
Confidence 578999999999999999999988 343333 3222100 0011111111111111 1122222333332 334
Q ss_pred EEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC--CCCCeEEEc
Q psy16778 113 GVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL--VEPDVRTVS 185 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~Id 185 (433)
||++.......+|..|. +... .-+||+.++.+++++|...|+ .+.+.+.+...+.++++|... .+..-++|+
T Consensus 77 VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg-epip~Evl~qly~RfEePn~~~rWDspll~id 155 (261)
T COG4088 77 VIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG-EPIPEEVLRQLYDRFEEPNPDRRWDSPLLVID 155 (261)
T ss_pred EEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC-CCCCHHHHHHHHHhhcCCCCCccccCceEEEe
Confidence 66666665444443322 2222 679999999999999997775 688899999999999987542 334678888
Q ss_pred cCCCHHHH
Q psy16778 186 VNEPLEGI 193 (433)
Q Consensus 186 ~~~~~ee~ 193 (433)
+.....+.
T Consensus 156 ~~d~~t~~ 163 (261)
T COG4088 156 DSDVSTEV 163 (261)
T ss_pred cccccccc
Confidence 54333333
No 106
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=2.5e-11 Score=111.33 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC---------------------CCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK---------------------QPL 87 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~---------------------~~~ 87 (433)
.+.+|+|||.+||||||+++.|.+ +|+.++|.|.+...... ... ..| +.|
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 347899999999999999999997 89999999965321100 000 001 122
Q ss_pred CCcCChhHHH---------HHHHHHHHhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCC
Q psy16778 88 NDEDRRPWLN---------NINRIIHQLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHF 157 (433)
Q Consensus 88 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~ 157 (433)
+++.....++ .+...+......+..+|+...+ +.+.... ... ..++++.+|.+++.+|+.+|++.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~---~~~-d~ii~V~a~~e~~~~Rl~~R~~~- 157 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGD---AGL-DFIVVVAADTELRLERAVQRGMG- 157 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCch---hcC-CeEEEEECCHHHHHHHHHHcCCC-
Confidence 2221111111 1112222222344456654444 2232111 111 47899999999999999999642
Q ss_pred CCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 158 MPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+.+....+.+.......+.++++|+++.+++++..++.+.+
T Consensus 158 -s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~ 200 (208)
T PRK14731 158 -SREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLY 200 (208)
T ss_pred -CHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 3344443333322211112237899999999999999887654
No 107
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.21 E-value=3.7e-11 Score=109.47 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCc----ccc--cccc--ccCCCCCCcCC--------------hhHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHP----QSN--IDKM--SAKQPLNDEDR--------------RPWL 96 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~----~~~--~~~~--~~~~~~~~~~~--------------~~~~ 96 (433)
.+|+|+|.+||||||+++.|+. +|++++|+|.+.. +.. ...+ ..|..+..+.+ ....
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 7999999997531 100 0100 11222221111 0111
Q ss_pred HHHHHHHH------------HhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhH
Q psy16778 97 NNINRIIH------------QLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLL 163 (433)
Q Consensus 97 ~~~~~~~~------------~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l 163 (433)
..++.+++ .....+..+++...+ +.+.... ... +.+||+++|++++.+|+.+|.+ .+.+.+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~---~~~-D~vi~V~a~~e~ri~Rl~~R~g--~s~e~~ 154 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLD---RKM-DLVVVVDVDVEERVRRLVEKRG--LDEDDA 154 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCcc---ccC-CeEEEEECCHHHHHHHHHHcCC--CCHHHH
Confidence 11222211 111233334443333 2221111 111 4799999999999999999864 333444
Q ss_pred HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
...+..+.......+.++++|+++.+++++..++.+.+
T Consensus 155 ~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~ 192 (200)
T PRK14734 155 RRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLI 192 (200)
T ss_pred HHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHH
Confidence 44444333322223458899999999999988776543
No 108
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.20 E-value=1.2e-10 Score=101.00 Aligned_cols=106 Identities=26% Similarity=0.376 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV 114 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 114 (433)
+|+|+|.+||||||+++.|++.+ | ..+++.|.+... +.....+........++.+...+..+..+|..+|
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~-----l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VI 75 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG-----LNKDLGFSREDREENIRRIAEVAKLLADAGLIVI 75 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh-----hhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999998 5 456787776432 1112233333334445555555556667888889
Q ss_pred EEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHH
Q psy16778 115 LVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRL 150 (433)
Q Consensus 115 i~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl 150 (433)
++++.....+|..+++.. . +.++||++|.+++.+|.
T Consensus 76 id~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 76 AAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred EccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence 998887777777777654 2 78999999999999995
No 109
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.19 E-value=2.7e-10 Score=104.91 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc-----------------ccCCCCCCcCCh-------
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM-----------------SAKQPLNDEDRR------- 93 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~-----------------~~~~~~~~~~~~------- 93 (433)
.++|+|+|++||||||+++.|++++|+.+++++.+++......+ ..++.+......
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 47899999999999999999999999999999977532111101 112222111100
Q ss_pred ----------------------hH-HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH
Q psy16778 94 ----------------------PW-LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150 (433)
Q Consensus 94 ----------------------~~-~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl 150 (433)
+. ...+.+....+... .++|+++--..-. .+... .+.|||++|+++..+|.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~-~~~Vi~Gr~~~~~---v~~~a--~~~ifl~a~~~~Ra~Rr 155 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKN-DGIIADGRDIGTV---VFPNA--EVKIFLDASVEERAKRR 155 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-CCEEEEEcCcceE---EeCCC--CEEEEEECCHHHHHHHH
Confidence 00 01122223333323 3677765420000 12222 48999999999988887
Q ss_pred HHhhCC---CCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcC
Q psy16778 151 QKRAEH---FMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIM 200 (433)
Q Consensus 151 ~~R~~~---~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~ 200 (433)
..|... ....+.+...+..++. +.. ....+++||++ .+++++++.|.+.
T Consensus 156 ~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~-~a~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 156 YKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLK-KADDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHhcccccccCccc-CCCCeEEEECCCCCHHHHHHHHHHh
Confidence 666422 2222333333333321 111 33466889998 9999999998754
No 110
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.18 E-value=3.1e-10 Score=108.55 Aligned_cols=143 Identities=21% Similarity=0.267 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh-hhCCCcEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL-NVDNLTGVL 115 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vi 115 (433)
...+|+|+|++||||||+++.|.. +|+.++|.-.. ..+..+.+.+... ....-.+++
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~~---------------------~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLPP---------------------SLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcCH---------------------HHHHHHHHHHHhcCCCCCeEEEE
Confidence 346899999999999999999975 58877743221 1122222222221 112224455
Q ss_pred EcCc--c---cHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHH-hhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 116 VCSA--L---RRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQK-RAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 116 ~~~~--~---~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~-R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
+... . .......+++.+- ..+|||+++.+++.+|+.. |..+|.. ....+...+.++....+++.++++|++
T Consensus 63 D~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT 142 (288)
T PRK05416 63 DVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT 142 (288)
T ss_pred ccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC
Confidence 5432 1 2233445555432 5789999999999999975 3334432 122232333333221123457899999
Q ss_pred C-CCHHHHHHHHhcCC
Q psy16778 187 N-EPLEGIVSKSAIMP 201 (433)
Q Consensus 187 ~-~~~ee~~~~i~~~l 201 (433)
+ .+++++++.|.+.+
T Consensus 143 s~ls~~el~e~I~~~l 158 (288)
T PRK05416 143 SELSVHQLRERIRERF 158 (288)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8 89999999997654
No 111
>PRK08118 topology modulation protein; Reviewed
Probab=99.18 E-value=2.6e-10 Score=100.81 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
+.|+|+|++||||||+|+.|++.+++++++.|.+.+... ..... . +.....+...+. +...||++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-------w~~~~---~---~~~~~~~~~~~~-~~~wVidG~ 67 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-------WEGVP---K---EEQITVQNELVK-EDEWIIDGN 67 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-------CcCCC---H---HHHHHHHHHHhc-CCCEEEeCC
Confidence 479999999999999999999999999999999875321 11111 1 122233333333 346888875
Q ss_pred cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
... .....+... +.+|||++|.+++..|+.+|.
T Consensus 68 ~~~-~~~~~l~~~--d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 68 YGG-TMDIRLNAA--DTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred cch-HHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH
Confidence 321 122333333 589999999999999998884
No 112
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.17 E-value=8.3e-12 Score=111.35 Aligned_cols=144 Identities=22% Similarity=0.225 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------ccccc--cC-----------------CCCCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKMS--AK-----------------QPLNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~~--~~-----------------~~~~~~~~~ 93 (433)
++|+|||..||||||+++.|++ +|++++|.|.+..... ...+. .| ..|+++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~--- 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP--- 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH---
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH---
Confidence 5899999999999999999999 8999999998742110 00000 01 112221
Q ss_pred hHHHHHHHHHHHh--------hh---CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHh
Q psy16778 94 PWLNNINRIIHQL--------NV---DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADL 162 (433)
Q Consensus 94 ~~~~~~~~~~~~~--------~~---~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~ 162 (433)
.....++++++.. .. ....+|++..-+.+.. +.... +.+|+++||.+++.+|+.+|.+ ...+.
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~---~~~~~-D~vi~V~a~~e~ri~Rl~~R~~--~~~~~ 150 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESG---LEKLC-DEVIVVYAPEEIRIKRLMERDG--LSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTT---GGGGS-SEEEEEE--HHHHHHHHHHHHT--STHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhh---Hhhhh-ceEEEEECCHHHHHHHHHhhCC--CcHHH
Confidence 2222333333322 11 1134555555444432 11222 5799999999999999999975 33344
Q ss_pred HHHHHhhccCCCCCCCCCeEEEccCCCHHH
Q psy16778 163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEG 192 (433)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee 192 (433)
+...+..+.+.....+.++++|+++.+.+|
T Consensus 151 ~~~ri~~Q~~~~~k~~~ad~vI~N~g~~~~ 180 (180)
T PF01121_consen 151 AEARIASQMPDEEKRKRADFVIDNNGSLEE 180 (180)
T ss_dssp HHHHHHTS--HHHHHHH-SEEEE-SSHHH-
T ss_pred HHHHHHhCCCHHHHHHhCCEEEECCCCCCC
Confidence 443333332221112338899999987764
No 113
>PRK07261 topology modulation protein; Provisional
Probab=99.17 E-value=3e-10 Score=100.88 Aligned_cols=100 Identities=24% Similarity=0.283 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS 118 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~ 118 (433)
+.|+|+|++||||||+++.|++.+|.++++.|.+..... ++.......... +...+.++ ..||++.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------~~~~~~~~~~~~----~~~~~~~~-~wIidg~ 66 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------WQERDDDDMIAD----ISNFLLKH-DWIIDGN 66 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------cccCCHHHHHHH----HHHHHhCC-CEEEcCc
Confidence 479999999999999999999999999999998854321 111122222222 33334444 4888887
Q ss_pred cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.........+... ..+|||++|..+++.|+.+|.
T Consensus 67 ~~~~~~~~~l~~a--d~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 67 YSWCLYEERMQEA--DQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred chhhhHHHHHHHC--CEEEEEcCCHHHHHHHHHHHH
Confidence 6543444555544 489999999999999998885
No 114
>PRK13975 thymidylate kinase; Provisional
Probab=99.16 E-value=3.1e-10 Score=103.08 Aligned_cols=165 Identities=13% Similarity=0.198 Sum_probs=86.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCCCCCccccccccccCCCCCCcCChhHH--HHHH--HHHHHhhhCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV--KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL--NNIN--RIIHQLNVDNL 111 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~--~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~ 111 (433)
++.|+|.|++||||||+++.|+++++. .+..+|...... ....-.+...........+ ...+ ..+...+.. .
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~-ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~ 79 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKL-IREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R 79 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHH-HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 689999999999999999999999984 334433222110 0010001001110000011 1111 112222333 3
Q ss_pred cEEEEcC-----------cccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHh---HHHHHhhccCCC
Q psy16778 112 TGVLVCS-----------ALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFM-PADL---LESQFQTLEEPD 174 (433)
Q Consensus 112 ~~Vi~~~-----------~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~---l~~~~~~~~~~~ 174 (433)
.+|.+.. +....+...+.... . .++|||++|++++.+|+..|+.... ..+. +...+..+....
T Consensus 80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~ 159 (196)
T PRK13975 80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNE 159 (196)
T ss_pred EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhc
Confidence 4555521 12222222222211 1 6899999999999999998852111 1221 222222222110
Q ss_pred -CCCCCCeEEEccC-CCHHHHHHHHhcCCCCC
Q psy16778 175 -PLVEPDVRTVSVN-EPLEGIVSKSAIMPPTR 204 (433)
Q Consensus 175 -~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~ 204 (433)
++.....++||++ .+++++.++|.+.+..+
T Consensus 160 ~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 160 KFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred ccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 0123367999997 89999999988776553
No 115
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=5.8e-11 Score=105.59 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=79.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++||+++||. ..++.+.++.+.++.+.+|+|||||||||+.|.|.++. |-..+++.++
T Consensus 7 ~~~~~~l~~yYg~----------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 7 AIEVRDLNLYYGD----------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred eeEecceeEEECc----------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence 6788999999997 56888888999999999999999999999999999865 5567777777
Q ss_pred Cccc---cccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 73 HPQS---NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 73 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
+.+. ...+...|+.||.+..++ ....++++.....+|
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g 116 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG 116 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc
Confidence 7541 112345699999998888 677788877766555
No 116
>PRK06547 hypothetical protein; Provisional
Probab=99.15 E-value=6.4e-10 Score=98.67 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHH----------
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIH---------- 104 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 104 (433)
....++|+|+|++||||||+++.|++.+++.+++.|+++.... ++. . ....+.+.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~--~~~----~-------~~~~l~~~~l~~g~~~~~~y 78 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH--GLA----A-------ASEHVAEAVLDEGRPGRWRW 78 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc--cCC----h-------HHHHHHHHHHhCCCCceecC
Confidence 4556799999999999999999999999999999999874311 100 0 0011111110
Q ss_pred --------H--hhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC
Q psy16778 105 --------Q--LNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH 156 (433)
Q Consensus 105 --------~--~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~ 156 (433)
. ....+..+|+.+.. .....++.+.+....+.|||++|.+++.+|..+|.+.
T Consensus 79 d~~~~~~~~~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~ 141 (172)
T PRK06547 79 DWANNRPGDWVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD 141 (172)
T ss_pred CCCCCCCCCcEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch
Confidence 0 11123334454433 4455566665432257999999999999999999765
No 117
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.8e-11 Score=118.36 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=96.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.||.. .++.+.++++..|+.++|+|||||||||+.|++|+.. |..++++.++..-..
T Consensus 3 ~i~l~~v~K~yg~~----------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSFGSF----------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEcCCc----------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence 78999999999961 1677788999999999999999999999999999965 778888888764222
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
. ....++.||+....+.++..+++...+...+.+ -........+.++.. .+.-+|++-+..+...-+||-
T Consensus 73 ~-~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~----k~ei~~rV~eva~~L--~l~~lL~r~P~~LSGGQrQRV 142 (338)
T COG3839 73 E-KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP----KAEIDKRVKEVAKLL--GLEHLLNRKPLQLSGGQRQRV 142 (338)
T ss_pred h-HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc----hHHHHHHHHHHHHHc--CChhHHhcCcccCChhhHHHH
Confidence 2 235689999988888888888888877665421 000011222233222 244556666666666555553
No 118
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.13 E-value=3.1e-10 Score=121.41 Aligned_cols=165 Identities=19% Similarity=0.155 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH---------------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW--------------------- 95 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 95 (433)
+.++|+|.||+||||||+++.|++++|+.|+|++.+++...+..+..++.+.+......
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 35689999999999999999999999999999999987765555555555443110000
Q ss_pred ------------------HHHHHHHHHHh---hhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH--
Q psy16778 96 ------------------LNNINRIIHQL---NVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK-- 152 (433)
Q Consensus 96 ------------------~~~~~~~~~~~---~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~-- 152 (433)
...+.+.+... .....++|+++--.-- -.+.+. .+.|||+++++++.+|-.+
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigt---vv~p~a--~~kifl~a~~~~Ra~Rr~~~~ 595 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGT---VIFPDA--ALKVFLTASAEARAERRYKQL 595 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCcc---EECCCC--CeEEEEECChhHHHHHHHHHH
Confidence 00011111110 1112234444211000 000011 4899999999999888643
Q ss_pred -hhCCCCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCCCC
Q psy16778 153 -RAEHFMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRAPP 207 (433)
Q Consensus 153 -R~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~~~ 207 (433)
+.+.....+.+...+..++. +.. ...++++||++ .+++|+++.|.+.+.++.++
T Consensus 596 ~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~-~~~da~~idts~~~~~~v~~~i~~~i~~~~~~ 659 (661)
T PRK11860 596 ISKGISANIADLLADLEARDARDTQRSVAPLK-PAQDALLLDNSDLTIEQAVAQVLDWWQERQPF 659 (661)
T ss_pred HhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCc-cCCCEEEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence 22222233333333333332 221 34589999999 99999999998887665443
No 119
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.12 E-value=2.4e-10 Score=103.66 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=87.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccCC-CCCCcCC-------------hhHHH
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAKQ-PLNDEDR-------------RPWLN 97 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~~-~~~~~~~-------------~~~~~ 97 (433)
.|+|+|++||||||+++.|++ +|..+++.|.+...... ..+ ..|. .+...+. .....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 379999999999999999986 69999999988422100 000 0111 1111110 01112
Q ss_pred HHHHHHHHhh-----------hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778 98 NINRIIHQLN-----------VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ 166 (433)
Q Consensus 98 ~~~~~~~~~~-----------~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~ 166 (433)
.++.+++... ..+..+|++..-+.+.....+. +.++|+++|++++.+|+.+|.+. ..+.+...
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~----D~vi~V~a~~e~r~~RL~~R~g~--s~e~a~~r 153 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLC----DATVTVDSDPEESILRTISRDGM--KKEDVLAR 153 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhC----CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence 2222222211 1232344444433332222111 47999999999999999999642 23333333
Q ss_pred HhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 167 FQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
+..........+.++++|+++.+.+++..++.+.
T Consensus 154 i~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l 187 (196)
T PRK14732 154 IASQLPITEKLKRADYIVRNDGNREGLKEECKIL 187 (196)
T ss_pred HHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHH
Confidence 3222221112345889999999999999888754
No 120
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.11 E-value=2.9e-09 Score=90.44 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-C---CeEEeCCCCCccccccccccCCCCCCcCChhHHH---------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-G---VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN--------------- 97 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-g---~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 97 (433)
+|..|+++|||||||-|+...+...+ + +.|+ ..++..... ..+..+..-...+|.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv--rRvITRpa~---ag~EdH~avs~~eF~~~a~~g~FAlsWqAhG 78 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV--RRVITRPAD---AGGEDHDALSEAEFNTRAGQGAFALSWQAHG 78 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEE--EEEecccCC---CCcccccccCHHHHHHHhhcCceeEEehhcC
Confidence 68899999999999999999988887 2 2222 222211100 1123332222222222
Q ss_pred ---HHHHHHHHhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778 98 ---NINRIIHQLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP 173 (433)
Q Consensus 98 ---~~~~~~~~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~ 173 (433)
.+-..+..++.+|..+|+.++- ..+..+..... ..+|.|+++++++.+|+.+|+. ..++.+...+.+-...
T Consensus 79 L~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~---Llvv~ita~p~VLaqRL~~RGR--Es~eeI~aRL~R~a~~ 153 (192)
T COG3709 79 LSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQ---LLVVCITASPEVLAQRLAERGR--ESREEILARLARAARY 153 (192)
T ss_pred ccccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhc---ceeEEEecCHHHHHHHHHHhcc--CCHHHHHHHHHhhccc
Confidence 1233456677788655554442 33444444443 4899999999999999999974 3345555555544443
Q ss_pred CCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 174 DPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.. ...+..+||+++..+...+.....+.+
T Consensus 154 ~~-~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 154 TA-GPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred cc-CCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence 32 456889999999999998888777664
No 121
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.10 E-value=1.5e-10 Score=103.79 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc------cc--ccCCCC-CCcCCh-------------hHHH
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID------KM--SAKQPL-NDEDRR-------------PWLN 97 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~------~~--~~~~~~-~~~~~~-------------~~~~ 97 (433)
+|+|+|++||||||+++.|++ +|++++++|.+.++.... .+ ..|..+ ...... ....
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999 899999999885431110 00 011111 000000 0111
Q ss_pred HHHHHHH--------Hhhh-C-CCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778 98 NINRIIH--------QLNV-D-NLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ 166 (433)
Q Consensus 98 ~~~~~~~--------~~~~-~-~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~ 166 (433)
.+++++. .... . ...+++...+ +.+.. +.... +.+|++++|.+++.+|+.+|.+. ..+.+...
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~---~~~~~-D~vv~V~a~~~~ri~Rl~~Rd~~--s~~~~~~r 153 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETG---LEKLV-DRVIVVDAPPEIQIERLMKRDGL--SEEEAEAR 153 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCC---cHHhC-CeEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence 2222222 1111 1 1234443333 22221 11111 47999999999999999999642 23333333
Q ss_pred HhhccCCCCCCCCCeEEEccCCCHH
Q psy16778 167 FQTLEEPDPLVEPDVRTVSVNEPLE 191 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~Id~~~~~e 191 (433)
+..........+.++++|+++.+.+
T Consensus 154 ~~~Q~~~~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 154 IASQMPLEEKRARADFVIDNSGSLE 178 (179)
T ss_pred HHhcCCHHHHHHhCCEEEECcCCCC
Confidence 3332222111344889999886543
No 122
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.10 E-value=1.1e-09 Score=99.26 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccC-C----------CCCCcCC-----------hh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK-Q----------PLNDEDR-----------RP 94 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~-~----------~~~~~~~-----------~~ 94 (433)
.+++|+|+|.|||||||+++.|++++|+.++...++.++........+ . .+.++.. ..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 567999999999999999999999999976555444322111001111 0 0111111 11
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEc-CHHHHHHHHHHhhC
Q psy16778 95 WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKA-EFGVILSRLQKRAE 155 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~-~~e~l~~Rl~~R~~ 155 (433)
.+..+..++...+.+|.++|+++....+.+++...... ..++++.+ +++++.+|+..|..
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~-v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNN-IRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcC-eEEEEEEeCCHHHHHHHHHHHhh
Confidence 12235566777788999999999887777776544333 35566654 68888899999973
No 123
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.10 E-value=1.6e-09 Score=111.33 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=92.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT 112 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
+...++.+|+++|+|||||||+++.+++..|+.+++.|.+- ........+...+.+|.+
T Consensus 364 ~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg---------------------~~~~~~~~a~~~L~~G~s 422 (526)
T TIGR01663 364 LDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG---------------------STQNCLTACERALDQGKR 422 (526)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH---------------------HHHHHHHHHHHHHhCCCc
Confidence 34567889999999999999999999999999999999761 022234456777889999
Q ss_pred EEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCC-----CCCHHhHHHHHhhccCCCC
Q psy16778 113 GVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEH-----FMPADLLESQFQTLEEPDP 175 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~-----~~~~~~l~~~~~~~~~~~~ 175 (433)
+|||.+...+..|..+.+ .+- ...+|+++|.+++.+|+..|... ..+...+..+...++++..
T Consensus 423 VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~ 495 (526)
T TIGR01663 423 CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPAL 495 (526)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCc
Confidence 999999877666554444 322 77899999999999999998632 1224556777777777653
No 124
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.10 E-value=8.4e-11 Score=114.30 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=100.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.||. ..++.++++++.+|+++.|.|||||||||+.|+||+.. |...+++.++..-.
T Consensus 5 ~l~i~~v~k~yg~----------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp- 73 (352)
T COG3842 5 ALEIRNVSKSFGD----------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP- 73 (352)
T ss_pred eEEEEeeeeecCC----------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-
Confidence 6889999999996 66888899999999999999999999999999999955 77888888775422
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
......|++||+...++.++..+|+...+...+..- .....+...+.+.-.. +-=|.+..+..+....+||.
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~---~~~i~~rv~e~L~lV~--L~~~~~R~p~qLSGGQqQRV 145 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK---KAEIKARVEEALELVG--LEGFADRKPHQLSGGQQQRV 145 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC---HHHHHHHHHHHHHHcC--chhhhhhChhhhChHHHHHH
Confidence 133456999999999999999999988876322110 0000112233333332 33466777888888888875
No 125
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.09 E-value=1.7e-09 Score=97.27 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC-ccccccccccCCCCCCcCChhHHH-----------------
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH-PQSNIDKMSAKQPLNDEDRRPWLN----------------- 97 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------- 97 (433)
.++.+|+|+||||||||||++.|.+.+.-.+....... .+.... ..|..+..-....+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~ 79 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD--EEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNY 79 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC--CCCceeEeCCHHHHHHHHHcCCeEEEEEECCee
Confidence 35789999999999999999999987632232222221 111100 1122221111111111
Q ss_pred --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcC-HHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778 98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAE-FGVILSRLQKRAEHFMP--ADLLESQFQTL 170 (433)
Q Consensus 98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~ 170 (433)
.-.+.+...+.+|+.+|++... .-...+++..+ .++||+..| .+++.+|+.+|+..... ..+++.+....
T Consensus 80 YGt~~~~i~~~~~~g~~~i~d~~~---~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~ 156 (186)
T PRK14737 80 YGTPKAFIEDAFKEGRSAIMDIDV---QGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIEL 156 (186)
T ss_pred ecCcHHHHHHHHHcCCeEEEEcCH---HHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 1123355667788888888753 22233444332 368999885 79999999998643221 22334433333
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+. ...++++|+++ +.+++..++...+.
T Consensus 157 ~~----~~~~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 157 DE----ANEFDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred hh----hccCCEEEECc-CHHHHHHHHHHHHh
Confidence 32 23378888888 88998888876553
No 126
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.09 E-value=2.2e-09 Score=98.60 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=88.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccc--cccCCCCCCcCChhHHHHHHHHHHHhhh--
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDK--MSAKQPLNDEDRRPWLNNINRIIHQLNV-- 108 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (433)
.++.+|+|+|++||||||+++.|++.+ .+.+++.|.++....... ......+..+.... +..+.+.+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFD-HDLLIEHLKALKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCccccc-HHHHHHHHHHHHcCC
Confidence 577899999999999999999999998 356789988764321000 01112222221111 1223333322211
Q ss_pred ---------------------CCCcEEE-EcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhHH
Q psy16778 109 ---------------------DNLTGVL-VCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLLE 164 (433)
Q Consensus 109 ---------------------~~~~~Vi-~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l~ 164 (433)
....+|| ++..... ...+.... ..+|||+++.++++.|..+|... -...+...
T Consensus 83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~--~~~~~~~~-d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~ 159 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLE--DERLRDLM-DIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI 159 (209)
T ss_pred ccccCcccccccccCCCeEEeCCCCEEEEEeehhcC--chhHhhhh-ceeEEEeCChhHHHHHHHhhcchhcCCCHHHHH
Confidence 1112333 3332211 01122222 47999999999999998888521 12233222
Q ss_pred HHHhhc--------cCCCCCCCCCeEEEccCC----CHHHHHHHHhcCC
Q psy16778 165 SQFQTL--------EEPDPLVEPDVRTVSVNE----PLEGIVSKSAIMP 201 (433)
Q Consensus 165 ~~~~~~--------~~~~~~~~~~~~~Id~~~----~~ee~~~~i~~~l 201 (433)
..+... ..+. +..++++|+++. +.+++..+|...+
T Consensus 160 ~~~~~~~~~~~~~~i~~~--~~~AD~vI~~~~~~~~~~~~l~~~i~~~~ 206 (209)
T PRK05480 160 NQYLSTVRPMHLQFIEPS--KRYADIIIPEGGKNRVAIDILKAKIRQLL 206 (209)
T ss_pred HHHHHhhhhhHHhhccHh--hcceeEEecCCCcchHHHHHHHHHHHHHh
Confidence 332222 1222 556999998664 7777777776654
No 127
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.09 E-value=1.5e-09 Score=100.70 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ 75 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~ 75 (433)
++++|+|.|++||||||+++.|++++|+.+++.+.+++.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 358999999999999999999999999999999997543
No 128
>PRK04040 adenylate kinase; Provisional
Probab=99.08 E-value=1.4e-09 Score=97.98 Aligned_cols=160 Identities=17% Similarity=0.157 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCC--------cCChhHHHHHHHHHHHhh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLND--------EDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 107 (433)
+++|+|+|+|||||||+++.|++++ ++.+++.+++..... ...|+.... .....+.+.....+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a---~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~- 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA---KEEGLVEHRDEMRKLPPEEQKELQREAAERIAEM- 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH---HHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHh-
Confidence 5789999999999999999999999 899999998753211 111221110 01111111111222222
Q ss_pred hCCCcEEEEcCc--------ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH---hhCCCCCHHhHHHHHhh--cc-CC
Q psy16778 108 VDNLTGVLVCSA--------LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK---RAEHFMPADLLESQFQT--LE-EP 173 (433)
Q Consensus 108 ~~~~~~Vi~~~~--------~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~---R~~~~~~~~~l~~~~~~--~~-~~ 173 (433)
..+..+|+++.. ....-.+.+++..+..+|++.++++++.+|..+ |.......+.+...... .+ ..
T Consensus 78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~ 157 (188)
T PRK04040 78 AGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMA 157 (188)
T ss_pred hcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 233457887632 111123344444336799999999999888774 33222332322221111 00 10
Q ss_pred C-CCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 174 D-PLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 174 ~-~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
+ .+....+++|.++ ..+++..+++.+.+
T Consensus 158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 158 YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 1 0112234455554 66999998887653
No 129
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=8.9e-11 Score=106.05 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=79.3
Q ss_pred Cccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc
Q psy16778 1 MAVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ 75 (433)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~ 75 (433)
|++++++|++.| +. .+.+.++++++++|+.|+|+|+|||||||+.|.|.... |..++++.+....
T Consensus 2 ~~i~~~nl~k~yp~~----------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGG----------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCC----------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc
Confidence 589999999999 65 33666777889999999999999999999999999944 7777877666432
Q ss_pred cc----ccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 76 SN----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 76 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
.. ......|++||.....+....+++++...+..
T Consensus 72 ~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~ 109 (258)
T COG3638 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY 109 (258)
T ss_pred chHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc
Confidence 11 11345699999999999999999999887644
No 130
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.07 E-value=1.8e-09 Score=98.72 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccccccCCCCCCcCChh-H-------HHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDKMSAKQPLNDEDRRP-W-------LNNINRI 102 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~~~~~~~~~~~~~~~-~-------~~~~~~~ 102 (433)
+|+.|+|.|++||||||+++.|++.+ |..++-......... ....-.+. ..+..... . +....+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~ 80 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDP-NEEMDDKTELLLFYAARAQHLEEV 80 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999987 333332222111000 00000000 01111111 0 1122333
Q ss_pred HHHhhhCCCcEEEEcCc------------ccHHHHHHHHh----cC-CeEEEEEEcCHHHHHHHHHHhhCCCC----CHH
Q psy16778 103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRN----NN-RVVFIYLKAEFGVILSRLQKRAEHFM----PAD 161 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~----~~-~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~ 161 (433)
+...+.+|..+|+|-.. ....+...+.. .. +..+|||++|++++.+|+.+|+.... ..+
T Consensus 81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~ 160 (205)
T PRK00698 81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLD 160 (205)
T ss_pred HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence 44445567666776221 11222222222 11 27899999999999999999963211 112
Q ss_pred hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+......+...........++||++.+++++..+|.+.+
T Consensus 161 ~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i 200 (205)
T PRK00698 161 FFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVI 200 (205)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 2222222222221112235688988899999999887654
No 131
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.07 E-value=4.6e-10 Score=96.77 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA 119 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~ 119 (433)
+|+|+|++||||||+++.|++.+|+++++.|.+..... .... ... .........+........ .+..+|+++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~-~~~---~~~~~i~~~l~~~~~~~~-~~~~~Vidg~~ 74 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLA-SEV---AAIPEVRKALDERQRELA-KKPGIVLEGRD 74 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHH-HHh---cccHhHHHHHHHHHHHHh-hCCCEEEEeee
Confidence 58999999999999999999999999999996542210 0000 000 001112222333333333 33467776543
Q ss_pred ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 120 LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 120 ~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
.... .+... .++|||++|++.+.+|+.+|
T Consensus 75 ~~~~---~~~~~--~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 75 IGTV---VFPDA--DLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred eeeE---EcCCC--CEEEEEECCHHHHHHHHHHH
Confidence 1110 01111 58999999999999999884
No 132
>KOG3220|consensus
Probab=99.06 E-value=7.5e-10 Score=97.36 Aligned_cols=157 Identities=19% Similarity=0.250 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc------cccc----------cc---------cCCCCCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS------NIDK----------MS---------AKQPLNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~------~~~~----------~~---------~~~~~~~~~~~ 93 (433)
.+|+|||..||||||+++.+- .+|+++||.|.+.+.- .+.. .. ....|+++...
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 479999999999999999998 5899999999774220 0000 00 01234433222
Q ss_pred hHHH---------HHHHHHHHhhhCCCcEE-EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhH
Q psy16778 94 PWLN---------NINRIIHQLNVDNLTGV-LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLL 163 (433)
Q Consensus 94 ~~~~---------~~~~~~~~~~~~~~~~V-i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l 163 (433)
..+. .....+......|..+| +|..-+++.- +++-. ..+|-+.|+.++..+|+.+|.+ ..++..
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~--~~~~~--~~tvvV~cd~~~Ql~Rl~~Rd~--lse~dA 154 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAK--LLKIC--HKTVVVTCDEELQLERLVERDE--LSEEDA 154 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHh--HHhhe--eeEEEEEECcHHHHHHHHHhcc--ccHHHH
Confidence 2221 11222333444565554 4555455542 12111 3588899999999999999973 334444
Q ss_pred HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+.....+-+.....+.++++|++..+++++.+++.+.+.
T Consensus 155 e~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~ 193 (225)
T KOG3220|consen 155 ENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLA 193 (225)
T ss_pred HHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHH
Confidence 444444444332233488999999999999988876654
No 133
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.04 E-value=3.6e-10 Score=98.27 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=68.6
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCC----hhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 43 IMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDR----RPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 43 l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
|+|+|||||||+++.|++++|+.+|+.+++.+.........|..++. .+. .-....+...+... ....++|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeee
Confidence 68999999999999999999999999998875422111000100000 000 11112222333322 34578999
Q ss_pred EcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHH
Q psy16778 116 VCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQK 152 (433)
Q Consensus 116 ~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~ 152 (433)
++.+.+....+.+.+ ... ..+|+|+++.+++.+|+.+
T Consensus 80 dGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 80 DGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 998877776666665 333 6899999999999999987
No 134
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.04 E-value=4.2e-09 Score=95.53 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---ccccc-ccCCCCCCcC--ChhHH-----HHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKM-SAKQPLNDED--RRPWL-----NNINRI 102 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~-~~~~~~~~~~--~~~~~-----~~~~~~ 102 (433)
+|++|+|.|++||||||+++.|++.+ |..++-...-.... ..... ..+....... ..-.+ ..+.+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~ 81 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998 33332111000000 00000 0010100000 00001 122334
Q ss_pred HHHhhhCCCcEEEEcCc------------ccHHHHHHH----HhcCCeEEEEEEcCHHHHHHHHHHhhCCCC----CHHh
Q psy16778 103 IHQLNVDNLTGVLVCSA------------LRRNYRDII----RNNNRVVFIYLKAEFGVILSRLQKRAEHFM----PADL 162 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l----~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~ 162 (433)
+...+.++..+|++... ....+...+ .......+|||++|++++++|+..|..... ..+.
T Consensus 82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 161 (195)
T TIGR00041 82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF 161 (195)
T ss_pred HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence 45555566555566211 111222222 111026899999999999999998864211 1122
Q ss_pred HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778 163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197 (433)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i 197 (433)
+....+.+.+... +....++||++.+++++..+|
T Consensus 162 ~~~~~~~y~~~~~-~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 162 FEKVRQRYLELAD-KEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHc-CCCcEEEEeCCCCHHHHHhhC
Confidence 2222333333332 133678899999999987764
No 135
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.03 E-value=2.8e-10 Score=94.90 Aligned_cols=108 Identities=29% Similarity=0.261 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh--CCCcEEEEc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV--DNLTGVLVC 117 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Vi~~ 117 (433)
+|+|+|+|||||||+++.|++++|+.+++.|++.....+.....+ .. .........+.+.+..... ....+|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g 77 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDD--ER-EYIDADIDLLDDILEQLQNKPDNDNWIIDG 77 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTT--CC-HHHHHHHHHHHHHHHHHHETTT--EEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcc--hh-hHHHHHHHHHHHHHHhhhccCCCCeEEEeC
Confidence 589999999999999999999999999999995332222211111 10 0011122333444444432 344577777
Q ss_pred CcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 118 SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
... ......+... ..++|+.++.+++.+|..+|
T Consensus 78 ~~~-~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 78 SYE-SEMEIRLPEF--DHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp CSC-HCCHSCCHHG--GCEEEEEEEEHHHHHHHHHH
T ss_pred CCc-cchhhhhhcC--CEEEEEECCCHHHHHHHHHH
Confidence 433 1110011111 36899998887444444444
No 136
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.03 E-value=3.7e-09 Score=95.85 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---cccccccCCCCCC--cCChhH------HHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKMSAKQPLND--EDRRPW------LNNINRIIH 104 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~ 104 (433)
++|+|.|++||||||+++.|++.+ |..++......... .....-....... ...... .....+.+.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 76665554332110 0111000000000 000100 011222333
Q ss_pred HhhhCCCcEEEEcCc------------ccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCCCCC----HHhH
Q psy16778 105 QLNVDNLTGVLVCSA------------LRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEHFMP----ADLL 163 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~------------~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l 163 (433)
.....+..+|++-.. ....+...+.. ... ..+|||+++++++.+|+.+|++.... .+.+
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 160 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH 160 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence 444566656666211 01222222221 111 68999999999999999998753221 1222
Q ss_pred HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
......+...........++||++.+++++.++|.+.+
T Consensus 161 ~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i 198 (200)
T cd01672 161 ERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAI 198 (200)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 22222222211000124588888899999999887654
No 137
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.02 E-value=1.9e-10 Score=100.46 Aligned_cols=100 Identities=15% Similarity=0.037 Sum_probs=77.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
|+++++|++.|+.- -.++.++++++.+|+.++|+|+|||||||+.|+|.... |...++.-++..-
T Consensus 1 mI~f~~V~k~Y~~g---------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYPGG---------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcCCC---------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc
Confidence 57899999999862 23777888999999999999999999999999999877 6666666665421
Q ss_pred --ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
-..-....|++||+.......+..++++..+...|
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 11123356899999877777888888888776555
No 138
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.02 E-value=3.7e-10 Score=113.27 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------cccc--cCC-----------------CCCCcCCh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKMS--AKQ-----------------PLNDEDRR 93 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~~--~~~-----------------~~~~~~~~ 93 (433)
.+|+|||++||||||+++.|++ +|++++|+|.+..+... ..+. .|. .|.++...
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 89999999988533100 0000 111 22222111
Q ss_pred hHHHHHHHHHHH--------hhh--CCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHh
Q psy16778 94 PWLNNINRIIHQ--------LNV--DNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADL 162 (433)
Q Consensus 94 ~~~~~~~~~~~~--------~~~--~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~ 162 (433)
..++.++.. ... .+..+|+.... +.+... .... +.+|||++|.+++.+|+.+|.+ ...+.
T Consensus 81 ---~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~---~~~~-D~iI~V~ap~e~ri~Rl~~rRg--~s~~~ 151 (395)
T PRK03333 81 ---AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGM---APLF-HLVVVVDADVEVRVRRLVEQRG--MAEAD 151 (395)
T ss_pred ---HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCc---hhhC-CEEEEEECCHHHHHHHHHhcCC--CCHHH
Confidence 122222222 111 23345554333 222211 1111 4799999999999999988644 22222
Q ss_pred HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
....+..+.......+.++++|+++.+++++..++...+.
T Consensus 152 a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~ 191 (395)
T PRK03333 152 ARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWA 191 (395)
T ss_pred HHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 2222222211111133478999998999999888876543
No 139
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.01 E-value=1.1e-08 Score=93.67 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=86.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWL 96 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 96 (433)
..++..|+|+|+|||||||+++.|.+.. .+.+......+.......-...+.|-....+ ..+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 3477899999999999999999998642 2222222221111000000001111111000 000
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc-CC
Q psy16778 97 NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQTLE-EP 173 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~-~~ 173 (433)
-.-...+.....+|..+|+++.. .....+++..+ ..++|+. .+.+++.+|+.+|+.. ..+.+..++.... +.
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~--~~~~~~~Rl~~~~~e~ 164 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDV---QGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTE--SPEELERRLATAPLEL 164 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 01113455667788888888764 34455555544 3344443 5677999999998643 3334433333221 11
Q ss_pred CCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 174 DPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
........++||++.+++++.+++.+.+.
T Consensus 165 ~~~~~~~~~iId~~~~~e~v~~~i~~~l~ 193 (206)
T PRK14738 165 EQLPEFDYVVVNPEDRLDEAVAQIMAIIS 193 (206)
T ss_pred hcccCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 11012255677777899999888877663
No 140
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.01 E-value=1.8e-10 Score=104.98 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=94.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
|+++++|+|+|+. -++++++++++..|+.++|+|+|||||||+.|++.+.. |..++++.++.....
T Consensus 1 MI~~~nvsk~y~~----------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRYGN----------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP 70 (309)
T ss_pred CceeeeeehhcCC----------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH
Confidence 5789999999986 56888899999999999999999999999999999865 888999988864322
Q ss_pred c-cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 I-DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
. -+...||.+|.-..++.++..+++..=-...+-+ -........+.+...+=..--|.+.-|.++....+||.
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~----k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD----KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC----HHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence 2 2345689999988888888887764321111100 00001122333333220112356666777777777775
No 141
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.00 E-value=7.9e-09 Score=97.07 Aligned_cols=139 Identities=22% Similarity=0.293 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh--CCCcEEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV--DNLTGVLV 116 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Vi~ 116 (433)
.+|+|+|+|||||||.++.|.+ +|+.++| ++. ...+..+-+.+..... .+--++||
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--NlP-------------------~~Ll~~l~~~~~~~~~~~~~~Ai~iD 59 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALED-LGYYCVD--NLP-------------------PSLLPQLIELLAQSNSKIEKVAIVID 59 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--CCc-------------------HHHHHHHHHHHHhcCCCCceEEEEEe
Confidence 5799999999999999999988 6888875 331 0112222222221111 11224444
Q ss_pred cCc--ccHHH---HHHHHhcCC-eEEEEEEcCHHHHHHHHHH-hhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 117 CSA--LRRNY---RDIIRNNNR-VVFIYLKAEFGVILSRLQK-RAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 117 ~~~--~~~~~---~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~-R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
.-. ..... ...+++..- ..++||+|+.++|.+|-.. |+.+|.. .+.++...+.+.+. ++.++++|
T Consensus 60 ~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~l---r~~Ad~vI 136 (284)
T PF03668_consen 60 IRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPL---RERADLVI 136 (284)
T ss_pred CCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHH---HHhCCEEE
Confidence 322 11222 223333322 7899999999999999855 5556654 23344444444444 45689999
Q ss_pred ccC-CCHHHHHHHHhcCCC
Q psy16778 185 SVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 185 d~~-~~~ee~~~~i~~~l~ 202 (433)
||+ .++.++.+.+.+.+.
T Consensus 137 DTs~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 137 DTSNLSVHQLRERIRERFG 155 (284)
T ss_pred ECCCCCHHHHHHHHHHHhc
Confidence 999 999999999987754
No 142
>PRK13973 thymidylate kinase; Provisional
Probab=99.00 E-value=7.1e-09 Score=95.50 Aligned_cols=166 Identities=12% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccc---cC---CCCCCcCChhH-----HHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMS---AK---QPLNDEDRRPW-----LNNINRI 102 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~---~~---~~~~~~~~~~~-----~~~~~~~ 102 (433)
+|+.|+|.|..||||||+++.|++.+ |..++.+..--.......+. .+ ..+......-. ...+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 81 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV 81 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999 88887664332111111100 00 00111000000 1123445
Q ss_pred HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCCC-----C--
Q psy16778 103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEHF-----M-- 158 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~~-----~-- 158 (433)
+...+..|..+|.|-.. ....+...+... .. .+++||++|++++.+|+.+|.... .
T Consensus 82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~ 161 (213)
T PRK13973 82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE 161 (213)
T ss_pred HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence 66666677544444211 122344444321 12 799999999999999999885321 1
Q ss_pred CHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
..+.+....+.+............+||++.+++++..+|.+.+.
T Consensus 162 ~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~ 205 (213)
T PRK13973 162 DLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVD 205 (213)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 11222222222222211011134778888999999999877654
No 143
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.99 E-value=7.6e-09 Score=94.64 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=82.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC-CCCccccccccccCCCCCCcCCh-------------------h
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD-HLHPQSNIDKMSAKQPLNDEDRR-------------------P 94 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D-~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 94 (433)
+++|.+|+|+|++||||||+++.|++.++..++... ....+.. +...|..+..-... .
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~--ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRP--GEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGN 79 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCC--CCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCc
Confidence 467899999999999999999999998752222211 1111100 00011111000000 0
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-CeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhc-c
Q psy16778 95 WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQTL-E 171 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~-~ 171 (433)
.+......+......|..+|++..... ...+.+.. +..+|++ .++.+++.+|+.+|+.. ..+.+...+... .
T Consensus 80 ~y~~~~~~i~~~l~~g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~ 154 (205)
T PRK00300 80 YYGTPRSPVEEALAAGKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTD--SEEVIARRLAKARE 154 (205)
T ss_pred cccCcHHHHHHHHHcCCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence 111113345666677877777765311 12222222 2344555 67799999999998642 222222222111 1
Q ss_pred CCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
+... ...++++|.+ .+++++..++...+..
T Consensus 155 ~~~~-~~~~d~vi~n-~~~e~~~~~l~~il~~ 184 (205)
T PRK00300 155 EIAH-ASEYDYVIVN-DDLDTALEELKAIIRA 184 (205)
T ss_pred HHHh-HHhCCEEEEC-CCHHHHHHHHHHHHHH
Confidence 1100 1124456654 3789998888777654
No 144
>PLN02842 nucleotide kinase
Probab=98.98 E-value=1.7e-09 Score=109.68 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=92.2
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 43 IMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 43 l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
|+|++||||||+++.|++++|+.+++++++...........|.. ... .........+.+.+........++|+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL 81 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL 81 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence 79999999999999999999999999998764321111001100 000 00111122222222221112346888
Q ss_pred EcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCC---------------------------CCCHHhHHHH
Q psy16778 116 VCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEH---------------------------FMPADLLESQ 166 (433)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~---------------------------~~~~~~l~~~ 166 (433)
++.+......+.+.+... ..+|+|+++.+++++|+..|.-+ ....+.+...
T Consensus 82 DGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkR 161 (505)
T PLN02842 82 DGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKAR 161 (505)
T ss_pred eCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHH
Confidence 876655555555554332 68999999999999999887421 1113445544
Q ss_pred HhhccCC----CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 167 FQTLEEP----DPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 167 ~~~~~~~----~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+..++.. ..+...-...||.+.+++++.++|...+
T Consensus 162 L~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL 200 (505)
T PLN02842 162 LQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLL 200 (505)
T ss_pred HHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHH
Confidence 4333321 1111123567888789998887775554
No 145
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.97 E-value=1e-08 Score=91.73 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC--CCCCc-----------------CChhHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ--PLNDE-----------------DRRPWLNN 98 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~--~~~~~-----------------~~~~~~~~ 98 (433)
|.+|+|+|++||||||+++.|++.++..++......++.. .+...+. .+... .....+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 5789999999999999999999977544443221111100 0000010 00000 00011112
Q ss_pred HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCC
Q psy16778 99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLV 177 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~ 177 (433)
....+...+.+|..+|++..... .......... ..++++..+.+.+.+|+..|... ..+.+...+..........
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~--~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~--~~~~i~~rl~~~~~~~~~~ 155 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQG--ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD--SEEVIERRLAKAKKEIAHA 155 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHH--HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhcc
Confidence 23456666777888888765321 1222222222 34444567789999999988632 2222322222111100012
Q ss_pred CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 178 EPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 178 ~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.++++|.++ +.+++..++...+
T Consensus 156 ~~~d~~i~n~-~~~~~~~~l~~~~ 178 (180)
T TIGR03263 156 DEFDYVIVND-DLEKAVEELKSII 178 (180)
T ss_pred ccCcEEEECC-CHHHHHHHHHHHH
Confidence 2377888775 7888888876543
No 146
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.96 E-value=1.9e-10 Score=107.17 Aligned_cols=94 Identities=20% Similarity=0.073 Sum_probs=69.9
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|++++++|++.|+. -..++++++++.+|++++|+||+||||||+.|.|++.+ |..++++.++....
T Consensus 1 ~~L~~~~ls~~y~~----------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~ 70 (258)
T COG1120 1 MMLEVENLSFGYGG----------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS 70 (258)
T ss_pred CeeEEEEEEEEECC----------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC
Confidence 57899999999986 45788899999999999999999999999999999966 78899998876421
Q ss_pred c-ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 77 N-IDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
. ......++..|.......+...+-++.
T Consensus 71 ~kelAk~ia~vpQ~~~~~~~~tV~d~V~~ 99 (258)
T COG1120 71 PKELAKKLAYVPQSPSAPFGLTVYELVLL 99 (258)
T ss_pred HHHHhhhEEEeccCCCCCCCcEEeehHhh
Confidence 1 112344666666444344444433333
No 147
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.94 E-value=2.8e-08 Score=96.93 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=88.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCcccccc---------------------------ccccCCCC
Q psy16778 41 FVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNID---------------------------KMSAKQPL 87 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~---------------------------~~~~~~~~ 87 (433)
++|+|++||||||+++.|+..++ +.+++.|+++...... .+..|...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~ 81 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL 81 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 68999999999999999998875 3489999987321100 00001111
Q ss_pred CCc-----CCh-hHHHH-----------------HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc----CC-eEEEEE
Q psy16778 88 NDE-----DRR-PWLNN-----------------INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN----NR-VVFIYL 139 (433)
Q Consensus 88 ~~~-----~~~-~~~~~-----------------~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~----~~-~~vv~L 139 (433)
+.+ ..+ ...+. ....+...+..+.-+|+|.......+|..+... .. +.+||+
T Consensus 82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l 161 (340)
T TIGR03575 82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL 161 (340)
T ss_pred cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 000 000 00000 011111222333347778777777777655543 22 789999
Q ss_pred EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC---CCCCCeEEEcc
Q psy16778 140 KAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP---LVEPDVRTVSV 186 (433)
Q Consensus 140 ~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~Id~ 186 (433)
++|.+++.+|..+|. ...+.+.+......++.|.. -.+...++++.
T Consensus 162 d~ple~~l~RN~~R~-~~v~devie~m~~r~E~P~~~~nrWd~pl~~v~~ 210 (340)
T TIGR03575 162 DCPVESCLLRNKQRP-VPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQS 210 (340)
T ss_pred eCCHHHHHHHHhcCC-CCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEEec
Confidence 999999999999996 45667777877777777653 13446677765
No 148
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.94 E-value=1.7e-08 Score=91.83 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhh------
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNV------ 108 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 108 (433)
+|+|+|++||||||+++.|++.+ ++.+++.|++......... ..+..+..+.... .+.+.+.+..+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~ 79 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD-FDLLISHLQDLKNGKSVEI 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCccc-HHHHHHHHHHHHCCCCEec
Confidence 48999999999999999999987 4678999987643211110 1111222111111 1222222322211
Q ss_pred -----------------CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC--CCCCHHhHHHHH--
Q psy16778 109 -----------------DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE--HFMPADLLESQF-- 167 (433)
Q Consensus 109 -----------------~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~--~~~~~~~l~~~~-- 167 (433)
....+||..+...-. ...+.+.. ..+|||+++.++++.|..+|.. +....+.....+
T Consensus 80 p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~-~~~~~~~~-d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~ 157 (198)
T cd02023 80 PVYDFKTHSRLKETVTVYPADVIILEGILALY-DKELRDLM-DLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLK 157 (198)
T ss_pred cccccccCcccCCceecCCCCEEEEechhhcc-chhHHhhc-CeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 111233333321111 11122222 4799999999998888776642 222222222222
Q ss_pred ------hhccCCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778 168 ------QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI 199 (433)
Q Consensus 168 ------~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~ 199 (433)
..+..++ ++.++++|+++.+..+.+..+.+
T Consensus 158 ~~~~~~~~~i~~~--~~~aD~ii~~~~~~~~~~~~~~~ 193 (198)
T cd02023 158 FVKPMHEQFIEPT--KRYADVIIPRGGDNHVAIDLIVQ 193 (198)
T ss_pred hhhhhHHHhCccc--hhceeEEECCCCCccHHHHHHHH
Confidence 1222222 66689999987555555554443
No 149
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.93 E-value=2.7e-09 Score=104.42 Aligned_cols=170 Identities=20% Similarity=0.194 Sum_probs=105.1
Q ss_pred HHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC---
Q psy16778 220 QFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST--- 291 (433)
Q Consensus 220 ~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~--- 291 (433)
...|+.|.|+|+.|. ++.++||+|++||.+++.||+++|+++. ++.+ -..+|++|.+.|+++++.+.+.
T Consensus 19 ~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~ 95 (326)
T cd02811 19 STGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAALE 95 (326)
T ss_pred CCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhhcc
Confidence 356899999999999 8889999999999999999999999763 3433 3669999999999998887742
Q ss_pred -----CCHHHHHHhCCCCcceEEEeecc----CHHHHHHHHHHHHHcCCcEEEEeeeecc-cCccccccccccCCCccch
Q psy16778 292 -----TSIEELAEKTPQTTKWFQLYIYR----DREITKSLVQRAEKAGYKALVLTVDTNV-FGTRYADIRNKFNMPSHLN 361 (433)
Q Consensus 292 -----~~~eeva~~~~~~~~w~qly~~~----d~~~~~~~~~~A~~ag~~~i~ltvD~~~-~G~r~~~~~~~~~~~~~~s 361 (433)
.+++.+.+..++.+...-+.... +.+.. .+..+..++.++-+.+..+. ...++.+ ..|. .-.-.
T Consensus 96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~---~~~i~~~~adalel~l~~~q~~~~~~~~--~df~-~~~~~ 169 (326)
T cd02811 96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEA---RRAVEMIEADALAIHLNPLQEAVQPEGD--RDFR-GWLER 169 (326)
T ss_pred ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHH---HHHHHhcCCCcEEEeCcchHhhcCCCCC--cCHH-HHHHH
Confidence 23445544444444333333222 33433 33334456777777663211 1111111 0010 00012
Q ss_pred HHHHHhhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEe
Q psy16778 362 IEELAEKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 362 ~e~i~~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlT 405 (433)
++.+.+.. .+++..+. .++.+.+++++++|+++|+|+
T Consensus 170 i~~l~~~~-------~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 170 IEELVKAL-------SVPVIVKEVGFGISRETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHhc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 33333322 22222222 377899999999999999985
No 150
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.93 E-value=7.4e-10 Score=101.19 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=79.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
++++.+|++.|+... . ....+.++++++++|+.++|+|||||||||+..+++... |..++++-++...
T Consensus 1 ~i~~~~v~k~y~~~~----~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~ 74 (226)
T COG1136 1 MIELKNVSKIYGLGG----E--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE 74 (226)
T ss_pred CcEEeeeEEEeccCC----c--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH
Confidence 467899999997521 1 145888999999999999999999999999999999855 6667777554321
Q ss_pred ---ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 76 ---SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
...+....|++||.....+.++..+++...+.-.+
T Consensus 75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~ 112 (226)
T COG1136 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG 112 (226)
T ss_pred HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC
Confidence 11233456999999999999999999988766555
No 151
>PLN02924 thymidylate kinase
Probab=98.91 E-value=3e-08 Score=91.56 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc---c----ccc-cccCCCCCCcCChhHH--HH--HHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS---N----IDK-MSAKQPLNDEDRRPWL--NN--INRI 102 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~---~----~~~-~~~~~~~~~~~~~~~~--~~--~~~~ 102 (433)
..+|+.|+|.|..||||||+++.|++.+....+....+..+. . ... +..+.........-.+ .+ ....
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999943322221111110 0 000 0001011110000001 11 1233
Q ss_pred HHHhhhCCCcEEEEcCc-----------ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778 103 IHQLNVDNLTGVLVCSA-----------LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT 169 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~-----------~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~ 169 (433)
+...+..|..+|.|-.. ....+...+..... ++++||++|+++..+|...+..+....+.++...+.
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~~ 172 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAKR 172 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHHH
Confidence 55666677655555322 11223333332222 799999999999999975433222233333333333
Q ss_pred ccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 170 LEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 170 ~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
+..... ....+||.+.+++++..+|.+.+..
T Consensus 173 Y~~la~---~~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 173 FQTLRD---SSWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred HHHHhh---cCEEEECCCCCHHHHHHHHHHHHHH
Confidence 333321 2456778889999999988766543
No 152
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.91 E-value=9.6e-10 Score=100.02 Aligned_cols=84 Identities=25% Similarity=0.166 Sum_probs=65.5
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|+++++|++++|+.... ++ ..++++++++.+|+.++|+|.|||||||+++.|++.. |...+++..+....
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~-----~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~ 75 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AF-----HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKK 75 (252)
T ss_pred ceEEEeceEEEecCCcc-hh-----hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccc
Confidence 58999999999987441 11 5899999999999999999999999999999999955 78888887665321
Q ss_pred --cccccccCCCCCCc
Q psy16778 77 --NIDKMSAKQPLNDE 90 (433)
Q Consensus 77 --~~~~~~~~~~~~~~ 90 (433)
........++||++
T Consensus 76 ~~~~~~~~VQmVFQDp 91 (252)
T COG1124 76 RAKAFYRPVQMVFQDP 91 (252)
T ss_pred cchhhccceeEEecCC
Confidence 01122456778875
No 153
>PRK12338 hypothetical protein; Provisional
Probab=98.91 E-value=2.4e-08 Score=96.11 Aligned_cols=161 Identities=23% Similarity=0.254 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE-eCCCCCccccccccccCCC-------------CCCcC-----C---h
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDKMSAKQP-------------LNDED-----R---R 93 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i-d~D~~~~~~~~~~~~~~~~-------------~~~~~-----~---~ 93 (433)
.++.+|+|+|+|||||||+|+.||+++|+.++ ++|.+..- ........+. ...+. . .
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~-~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~ 80 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV-VRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC 80 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH-HcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence 45689999999999999999999999999988 55544321 0000000000 00000 0 0
Q ss_pred hHH--------HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHh--cCCeEEEEEEcCHHHHHHHHHHhhCCCCC----
Q psy16778 94 PWL--------NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRN--NNRVVFIYLKAEFGVILSRLQKRAEHFMP---- 159 (433)
Q Consensus 94 ~~~--------~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~--~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~---- 159 (433)
..| ..++.++......|.++||.+..+.+.+....+. ......+.+..+.++..+|...|......
T Consensus 81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~ 160 (319)
T PRK12338 81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQ 160 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhh
Confidence 111 2334455555678889999998888877664442 11234555568899999999886521111
Q ss_pred ---HH---hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 160 ---AD---LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 160 ---~~---~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.. .+.+++... . ++....+| .+.+.++.++.+.+.+..
T Consensus 161 l~~f~~Ir~Iq~~l~~~---A--~e~~VpvI-~N~did~Tv~~ile~I~e 204 (319)
T PRK12338 161 LEYFRENRIIHDHLVEQ---A--REHNVPVI-KNDDIDCTVKKMLSYIRE 204 (319)
T ss_pred hhChHHHHHHHHHHHHh---H--hhCCCcee-CCCcHHHHHHHHHHHHHh
Confidence 11 122222222 1 22233334 347888888888777654
No 154
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.89 E-value=7.8e-10 Score=103.57 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=78.3
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ- 75 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~- 75 (433)
|++.++++++.|+. -.++.+.++++..|+.++|.|+|||||||+.|++|+.. |..+++...+...
T Consensus 1 m~i~i~~~~~~~~~----------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 1 MSIRINNVKKRFGA----------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS 70 (345)
T ss_pred Cceeehhhhhhccc----------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh
Confidence 88999999999998 34666888999999999999999999999999999966 7788887743321
Q ss_pred -ccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 76 -SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
........|+.||+...++.++..+++...+.
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred ccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 12234467999999888888888888877664
No 155
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.89 E-value=1.3e-08 Score=109.83 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP 86 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~ 86 (433)
.+|+|.|+|||||||+++.||+++|+.+++++.+++...+..+..+..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~ 49 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGID 49 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCC
Confidence 489999999999999999999999999999999987644433333433
No 156
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.88 E-value=2.5e-08 Score=94.69 Aligned_cols=151 Identities=22% Similarity=0.319 Sum_probs=83.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHH-HHHHHHHHhhhCCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-NINRIIHQLNVDNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 112 (433)
..|+|+|.|||||||+++.|.+.+ .+.+++.+.+. ..... +.+...+...+ .+...+...+....-
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-------~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~i 73 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-------IDRND-YADSKKEKEARGSLKSAVERALSKDTI 73 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--------TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-------cchhh-hhchhhhHHHHHHHHHHHHHhhccCeE
Confidence 379999999999999999999976 33445544432 11111 33333333333 445556666656656
Q ss_pred EEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCC-CCCHHhHHHHHhhccCCCCC--CCCCeEEE
Q psy16778 113 GVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEH-FMPADLLESQFQTLEEPDPL--VEPDVRTV 184 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~I 184 (433)
+|+|.......+|..+. +... .-+||+.++.+.+..|..+|... ..+.+.+.....++|+|... .+...++|
T Consensus 74 VI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i 153 (270)
T PF08433_consen 74 VILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTI 153 (270)
T ss_dssp EEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEE
T ss_pred EEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEE
Confidence 67777665666654333 3333 78999999999999999999743 26688899999999988641 12346777
Q ss_pred c-cC--CCHHHHHHHH
Q psy16778 185 S-VN--EPLEGIVSKS 197 (433)
Q Consensus 185 d-~~--~~~ee~~~~i 197 (433)
+ .+ .+.+++.+.+
T Consensus 154 ~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 154 DSSDEELPLEEIWNAL 169 (270)
T ss_dssp E-TTS---HHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 7 33 4556666666
No 157
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.87 E-value=4.7e-10 Score=102.10 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=82.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
.+++++|++.||+ .++++++++++.+|++++|+||+||||||+-..+++.+ |...+++.++...
T Consensus 4 lL~v~~l~k~FGG----------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRFGG----------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeecCC----------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH
Confidence 4678999999998 78999999999999999999999999999999999877 8888999888642
Q ss_pred ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 76 SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
....++.....||....++.++.+++++.......
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 22334445667888878888899999988766443
No 158
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.4e-09 Score=102.05 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=81.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
|+++++|+|+|+.. ......+++++++++++|.+++|+|.|||||||+.|.+...- |-.+++++++..-
T Consensus 1 mI~l~~vsK~~~~~-----~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT-----GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC-----CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh
Confidence 57899999999751 122256888999999999999999999999999999888633 8889999877531
Q ss_pred ccc--cccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 76 SNI--DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
... .+...|++||........+..++++..+..++
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 111 23456999999887777778888888877666
No 159
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.86 E-value=3e-08 Score=89.17 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWLNN 98 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 98 (433)
++.|+|+||+||||+|+++.|.+.+ ++.++-............-...+.|-..... ..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 5789999999999999999999986 4444443333322110000011111110000 01111
Q ss_pred HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-CCC
Q psy16778 99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQTLEE-PDP 175 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-~~~ 175 (433)
-...+......++.+|++... .....+++... .++|||. .+.+.+.+|+.+|+.. ..+.+..++..-.. ...
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~---~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~--~~~~i~~rl~~a~~~~~~ 156 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDP---QGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTE--TAERIQKRLAAAQKEAQE 156 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECH---HHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhh
Confidence 122345555678888888773 22233444333 5899998 6677899999988642 22223222221111 000
Q ss_pred CCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 176 LVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 176 ~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
....+.+|.++ +.++..++++..+
T Consensus 157 -~~~fd~~I~n~-~l~~~~~~l~~~i 180 (184)
T smart00072 157 -YHLFDYVIVND-DLEDAYEELKEIL 180 (184)
T ss_pred -hccCCEEEECc-CHHHHHHHHHHHH
Confidence 01145666665 6777777766554
No 160
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.85 E-value=7.7e-08 Score=88.22 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCcccccc--ccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNID--KMSAKQPLNDEDRRPWLNNINRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
.++|.+|+|+|++||||||+++.|++.++ +.++..|......... ....+..++.+....+ ..+.+.+..+...
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~g 81 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDN-DLLYEHLKNLKNG 81 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHH-HHHHHHHHHHHCC
Confidence 35778999999999999999999999875 6688888875321110 1122444544332222 2223333332211
Q ss_pred -----------------------CCcE-EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhH
Q psy16778 110 -----------------------NLTG-VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLL 163 (433)
Q Consensus 110 -----------------------~~~~-Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l 163 (433)
...+ |+++.... +.+.+.+.. ..+|||+++.++++.|...|... -...+..
T Consensus 82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~--~~~~~~~~~-d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~ 158 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPL--FDERLRDLM-DLKIFVDTPLDIRLIRRIERDINERGRSLDSV 158 (207)
T ss_pred CCEecccceeecCCCCCceEEeCCCCEEEEEehhhh--chHhHHHhC-CEEEEEECChhHHHHHHHHHHHHhhCCCHHHH
Confidence 1122 22322211 112233222 47999999999999998777421 1122222
Q ss_pred HHHHh--------hccCCCCCCCCCeEEEccCCCHHHHHHHHh
Q psy16778 164 ESQFQ--------TLEEPDPLVEPDVRTVSVNEPLEGIVSKSA 198 (433)
Q Consensus 164 ~~~~~--------~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~ 198 (433)
..++. .+..+ .+..++++|++...-+..++.+.
T Consensus 159 ~~~~~~~~~~~~~~~i~~--~~~~Ad~vi~~~~~~~~~~~~~~ 199 (207)
T TIGR00235 159 IDQYRKTVRPMYEQFVEP--TKQYADLIIPEGGRNEVAINVLD 199 (207)
T ss_pred HHHHHHhhhhhHHHhCcc--cccccEEEEcCCCCchHHHHHHH
Confidence 22221 11112 25568899988766666555443
No 161
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.85 E-value=5.9e-09 Score=91.59 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=78.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++.++.+|-+|...+ -..+.++++++..+..+++.|+|||||||+..++|.-. |..-++.-.+..+
T Consensus 3 ~l~~~~~sl~y~g~~--------~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP-- 72 (259)
T COG4525 3 MLNVSHLSLSYEGKP--------RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP-- 72 (259)
T ss_pred eeehhheEEecCCcc--------hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--
Confidence 677889999998744 34677889999999999999999999999999999854 5566666555433
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
+...|..||++...+|++.++++...+...|
T Consensus 73 --gaergvVFQ~~~LlPWl~~~dNvafgL~l~G 103 (259)
T COG4525 73 --GAERGVVFQNEALLPWLNVIDNVAFGLQLRG 103 (259)
T ss_pred --CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence 3356899999999999999999887776555
No 162
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.85 E-value=3.6e-08 Score=86.51 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=68.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH-----------------HHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW-----------------LNNI 99 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 99 (433)
+|.+++|+||||+||||+.+.|-+..++.+--+-..+.+.....-...+-|-...++.. +-.-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~ 82 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS 82 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence 78999999999999999999999988555433333333221111111222222111111 1111
Q ss_pred HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhC
Q psy16778 100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAE 155 (433)
Q Consensus 100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~ 155 (433)
...+...+..|.+++++....-. ..+++..+ .+.||+.+| .+++.+|+..|+.
T Consensus 83 ~~~ve~~~~~G~~vildId~qGa---~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt 137 (191)
T COG0194 83 REPVEQALAEGKDVILDIDVQGA---LQVKKKMPNAVSIFILPPSLEELERRLKGRGT 137 (191)
T ss_pred HHHHHHHHhcCCeEEEEEehHHH---HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence 33355666788888887653111 12233222 567777766 8899999998874
No 163
>PRK06696 uridine kinase; Validated
Probab=98.82 E-value=1.2e-08 Score=94.76 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeE--EeCCCCCcc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKF--IDGDHLHPQ 75 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~--id~D~~~~~ 75 (433)
...+.+|+|.|++||||||+++.|++.+ |..+ +++|+++..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 3467899999999999999999999999 5554 559998754
No 164
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.82 E-value=1.4e-08 Score=92.25 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=88.9
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|++++++|+++||. ++++++.++++.+|++.+|.|++||||||.-|++.+.+ |...+++..+...
T Consensus 1 ~~L~ie~vtK~Fg~----------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~- 69 (300)
T COG4152 1 MALEIEGVTKSFGD----------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE- 69 (300)
T ss_pred CceEEecchhccCc----------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh-
Confidence 79999999999998 88999999999999999999999999999999999866 6677777666422
Q ss_pred cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.....|+.+.+....+..+..+.+..-....|-+ -.........++.... ++-+.+-..+++.+..+|.-
T Consensus 70 --~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~----~~e~~~~~~~wLer~~--i~~~~~~kIk~LSKGnqQKI 139 (300)
T COG4152 70 --IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP----KAEIQKKLQAWLERLE--IVGKKTKKIKELSKGNQQKI 139 (300)
T ss_pred --hhhhcccChhhhccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhcc--ccccccchHHHhhhhhhHHH
Confidence 1224566665544444444433332221122211 0000122233444442 56667777888888877654
No 165
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.81 E-value=3.2e-08 Score=88.76 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCcc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQ 75 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~ 75 (433)
+|+|.|.|||||||+++.|++.+ +..+++.|+++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 48999999999999999999998 7999999999754
No 166
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=2.2e-09 Score=97.34 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=80.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
.+++++|++.||. -..+.++++++.+|++.+|+|+|||||||+.|.+...+ |...+++.++..-.
T Consensus 8 ~I~vr~v~~~fG~----------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 8 LIEVRGVTKSFGD----------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred eEEEeeeeeecCC----------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 5789999999998 44778888999999999999999999999999999977 88899999875321
Q ss_pred -cc--cccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 77 -NI--DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 77 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.. .....|+.||.-..+..++..+|+...+.++.
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 11 12346889998877888888888877766554
No 167
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.81 E-value=1.1e-08 Score=100.89 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=103.2
Q ss_pred Hhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC----
Q psy16778 221 FALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST---- 291 (433)
Q Consensus 221 ~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~---- 291 (433)
..|++++|.|+.|. +..++||+|++||.+++.||+++|+++. ++.. -..+|++|.++|+++++.....
T Consensus 28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGg---s~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~ 104 (352)
T PRK05437 28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGG---SEKAKEINRKLAEAAEELGIAMGVGSQRAALKD 104 (352)
T ss_pred CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCC---ChhHHHHHHHHHHHHHHcCCCeEecccHhhccC
Confidence 45899999999998 7789999999999999999999998754 2322 2569999999999998877652
Q ss_pred ----CCHHHHHHhCCCCcceEEEeeccC----HHHHHHHHHHHHHcCCcEEEEeeeec-ccCccccccccccCCCccchH
Q psy16778 292 ----TSIEELAEKTPQTTKWFQLYIYRD----REITKSLVQRAEKAGYKALVLTVDTN-VFGTRYADIRNKFNMPSHLNI 362 (433)
Q Consensus 292 ----~~~eeva~~~~~~~~w~qly~~~d----~~~~~~~~~~A~~ag~~~i~ltvD~~-~~G~r~~~~~~~~~~~~~~s~ 362 (433)
.++..+.+..|+.+.+.-+..... .+. ..+..+..++.++-+.+..+ -...++.+ ..| ..-+
T Consensus 105 ~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~---~~~~~~~~~adal~l~l~~~qe~~~p~g~--~~f----~~~l 175 (352)
T PRK05437 105 PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEE---AQRAVEMIEADALQIHLNPLQELVQPEGD--RDF----RGWL 175 (352)
T ss_pred hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHH---HHHHHHhcCCCcEEEeCccchhhcCCCCc--ccH----HHHH
Confidence 234444445555554444433322 333 33334455677776655211 01111111 001 1011
Q ss_pred HHHHhhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEe
Q psy16778 363 EELAEKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 363 e~i~~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlT 405 (433)
+.|...... ..+++..|. .++.+.++.++++|+++|+|+
T Consensus 176 e~i~~i~~~----~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 176 DNIAEIVSA----LPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred HHHHHHHHh----hCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 223222110 122332222 377899999999999999994
No 168
>PRK06761 hypothetical protein; Provisional
Probab=98.80 E-value=8.6e-09 Score=97.89 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc--ccccccCCCCCCcCChhHHHHHHH----HHHHhhhCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN--IDKMSAKQPLNDEDRRPWLNNINR----IIHQLNVDNL 111 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 111 (433)
+++|+|+|++||||||+++.|++.+....++.+.+..... -........+..+....+.+.... ........+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999654333332211100 001111233444444444444444 3344456777
Q ss_pred cEEEEcCcccHHHHHHHHhc--CC--eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778 112 TGVLVCSALRRNYRDIIRNN--NR--VVFIYLKAEFGVILSRLQKRAEHFM 158 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~~--~~--~~vv~L~~~~e~l~~Rl~~R~~~~~ 158 (433)
.+|+.+......+++.+.+. .. ...+| +.|++.+.+|+..|.+++.
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw~~f~ 132 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRWNDFA 132 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHHHHHH
Confidence 88999999999999988851 11 34566 9999999999988875443
No 169
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.80 E-value=2.1e-09 Score=106.36 Aligned_cols=141 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|+++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++....
T Consensus 1 ~~L~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~ 70 (353)
T PRK10851 1 MSIEIANIKKSFGR----------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH 70 (353)
T ss_pred CEEEEEEEEEEeCC----------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 78999999999975 23677788999999999999999999999999999976 77778776654211
Q ss_pred cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
. .....++.+|+....+.++..+++.......+...-.+.....+...+.+.... +--+++..+..+....++|-
T Consensus 71 ~-~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 71 A-RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ--LAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred H-HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHHH
Confidence 1 123457888876666656666666544321100000000001122233444432 23345666666666666654
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.79 E-value=1.9e-07 Score=86.98 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=79.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C-eE-EeCCCCCccccccccccCCCCC--CcCChhHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG----V-KF-IDGDHLHPQSNIDKMSAKQPLN--DEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg----~-~~-id~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 106 (433)
..++.+|+|+|++||||||+++.|++.+. . .. ++.|++........ ..+.... .+.... ...+...+..+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~-~~g~~~~~~~~~~~d-~~~~~~~l~~l 107 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLD-AHGLRPRKGAPETFD-VAGLAALLRRL 107 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHH-hcccccccCCCCCCC-HHHHHHHHHHH
Confidence 45678999999999999999999999872 2 23 77777654321111 1122111 011111 11111111111
Q ss_pred hh-------------------------CCCcEEEEcCccc---HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC-CC
Q psy16778 107 NV-------------------------DNLTGVLVCSALR---RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE-HF 157 (433)
Q Consensus 107 ~~-------------------------~~~~~Vi~~~~~~---~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~-~~ 157 (433)
.. ....+||..+... ......+.... ..+|||++|.+++.+|+.+|.. .-
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~-D~vi~v~~~~~~~~~R~~~R~~~~g 186 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLF-DFTIFLDAPAEVLRERLVARKLAGG 186 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhcC
Confidence 10 0233455544422 11223333333 4899999999999999999841 11
Q ss_pred CCHHhHHHHHhhccCC-----CCCCCCCeEEEccCCC
Q psy16778 158 MPADLLESQFQTLEEP-----DPLVEPDVRTVSVNEP 189 (433)
Q Consensus 158 ~~~~~l~~~~~~~~~~-----~~~~~~~~~~Id~~~~ 189 (433)
...+.+...+.....+ ...+..++++|+++.+
T Consensus 187 ~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 187 LSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTAT 223 (229)
T ss_pred CCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecCC
Confidence 2233333333221111 0014558899988744
No 171
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.78 E-value=7.9e-09 Score=89.85 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=70.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
|+.+++|++.|++ .+..+.+++..+++++|+|+|||||||+...+|+-. |...|++.+......
T Consensus 1 ~l~L~~V~~~y~~------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P 68 (231)
T COG3840 1 MLALDDVRFSYGH------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP 68 (231)
T ss_pred CccccceEEeeCc------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc
Confidence 5789999999986 233455678999999999999999999999999955 778888887754322
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
...+..+.||+.+.+..++..+++-..
T Consensus 69 -~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 69 -AERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred -ccCChhhhhhccccchhhhhhhhhccc
Confidence 233667889988887777766665443
No 172
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.78 E-value=4e-08 Score=89.99 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh--hhCCCcEEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL--NVDNLTGVLV 116 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Vi~ 116 (433)
.+|+|+|+|||||||..+.|.+ +|+.++| ++.. ...+.+ -+.+... ....-.++||
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lGyycvD--NLPp----------------~Llp~~---~~~~~~~~~~~~kvAv~iD 59 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LGYYCVD--NLPP----------------QLLPKL---ADLMLTLESRITKVAVVID 59 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cCeeeec--CCCH----------------HHHHHH---HHHHhhcccCCceEEEEEe
Confidence 4789999999999999999988 6888875 3311 111111 1111111 1122235555
Q ss_pred cCc-----ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHH-hhCCCCCHH-----hHHHHHhhccCCCCCCCCCeEE
Q psy16778 117 CSA-----LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQK-RAEHFMPAD-----LLESQFQTLEEPDPLVEPDVRT 183 (433)
Q Consensus 117 ~~~-----~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~-R~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~ 183 (433)
.-. ...+....+++..+ ..++||+++.+++.+|... |+.+|.... .+....+.+.+. ++.++++
T Consensus 60 iRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL---k~~A~~v 136 (286)
T COG1660 60 VRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL---REIADLV 136 (286)
T ss_pred cccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH---HHHhhhE
Confidence 422 22344555665522 6899999999999999844 556666422 233333333333 5568899
Q ss_pred EccC-CCHHHHHHHHhcCCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l~ 202 (433)
||++ .++.++.+.|...+.
T Consensus 137 IDTs~ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 137 IDTSELSVHELRERIRTRFL 156 (286)
T ss_pred eecccCCHHHHHHHHHHHHc
Confidence 9998 999999999987764
No 173
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.78 E-value=6.3e-08 Score=89.62 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=41.6
Q ss_pred eEEEEEEcCHHHHHHHHHHhhCCCC---CH---HhHHHHHhhccCC-CCCCCCCeEEEccC--CCHHHHHHHHhc
Q psy16778 134 VVFIYLKAEFGVILSRLQKRAEHFM---PA---DLLESQFQTLEEP-DPLVEPDVRTVSVN--EPLEGIVSKSAI 199 (433)
Q Consensus 134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---~~---~~l~~~~~~~~~~-~~~~~~~~~~Id~~--~~~ee~~~~i~~ 199 (433)
.++|||+++++++.+|+.+|+.... .. ..+...+..+... +. .....++||.+ .++++++++|..
T Consensus 144 d~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~-~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 144 HLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEIS-EHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred CEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeCCChhhHHHHHHHHHc
Confidence 6899999999999999998864211 12 2333333333111 11 22367788877 888888887754
No 174
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.77 E-value=1.9e-09 Score=101.20 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=104.4
Q ss_pred ccccccceeeeccCCccceeeee--------------ecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLI--------------MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G 63 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g 63 (433)
.++++||++.||.++-.+..-+. .--+++.++++..|++.+|+|.|||||||+.|.+.+.. |
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57899999999876643332211 11356899999999999999999999999999999855 8
Q ss_pred CeEEeCCCCCcc-----ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEE
Q psy16778 64 VKFIDGDHLHPQ-----SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIY 138 (433)
Q Consensus 64 ~~~id~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~ 138 (433)
-..+++.++..- ...+.....+.||.....++.+.+++....+..+|.+ -....+...+++...+ +-=|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~----~~er~~~a~~~l~~Vg--L~~~ 157 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP----KAEREERALEALELVG--LEGY 157 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC----HHHHHHHHHHHHHHcC--chhh
Confidence 889999988532 1122345689999999999999999988877766632 0001122233444332 4445
Q ss_pred EEcCHHHHHHHHHHhhC
Q psy16778 139 LKAEFGVILSRLQKRAE 155 (433)
Q Consensus 139 L~~~~e~l~~Rl~~R~~ 155 (433)
-+--+.++...++||.+
T Consensus 158 ~~~yp~eLSGGMqQRVG 174 (386)
T COG4175 158 ADKYPNELSGGMQQRVG 174 (386)
T ss_pred hhcCcccccchHHHHHH
Confidence 56668889999999863
No 175
>COG4639 Predicted kinase [General function prediction only]
Probab=98.76 E-value=8.4e-08 Score=81.37 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCc----CChhHHHHHHHHHHHhhhCCCcEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDE----DRRPWLNNINRIIHQLNVDNLTGV 114 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~V 114 (433)
..++|+|.|||||||+++.. ......++.|++.... |.....+ .....++.+...+...+..|+..|
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-------g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~ti 73 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-------GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTI 73 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-------hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 57899999999999999843 3477888888875321 1122111 122344566677777888999999
Q ss_pred EEcCcccHHHHHHHHhcC----C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778 115 LVCSALRRNYRDIIRNNN----R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT 169 (433)
Q Consensus 115 i~~~~~~~~~~~~l~~~~----~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~ 169 (433)
++.+...++.|..+.+.+ . ...|+++.|.+.+.+|.+.|. +..+.+.+..+.+.
T Consensus 74 idAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~-Rqv~~~VI~r~~r~ 132 (168)
T COG4639 74 IDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE-RQVPEEVIPRMLRE 132 (168)
T ss_pred EEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc-hhCCHHHHHHHHHH
Confidence 999987777766555543 2 677999999999999987443 44566677766655
No 176
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.75 E-value=4.4e-09 Score=104.13 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=90.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...+.++++++..|.+++|+|+|||||||+.++|++.+ |...+++..+.....
T Consensus 4 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRFGA----------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEeCC----------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence 6899999999985 23566777999999999999999999999999999966 667777766542111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.....++.||+...++.++..+++.......+.+ .........+.+.... +.-+++..+..+....++|-
T Consensus 74 -~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----~~~~~~~~~~~l~~l~--L~~~~~~~~~~LSgGq~QRv 143 (353)
T TIGR03265 74 -QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----RAEVAERVAELLDLVG--LPGSERKYPGQLSGGQQQRV 143 (353)
T ss_pred -HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcC--CCchhhCChhhCCHHHHHHH
Confidence 1234688888877777667777765543322210 0001122233343332 33456777777777776664
No 177
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.75 E-value=3.8e-09 Score=104.85 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=83.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++.+++|.|+. ..+++++++++.+|.+.+|.|-+|+|||||.++|.+.+ |-.++++..+.-...
T Consensus 4 ~l~~~~itK~f~~----------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRFPG----------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEcCC----------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence 7889999999996 67888899999999999999999999999999999988 888999988864322
Q ss_pred --ccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 78 --IDKMSAKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
......|+.+|.....+.++..|+++.....
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~ 106 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP 106 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence 2345568999999999999999999887653
No 178
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.75 E-value=5.6e-08 Score=105.36 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ 85 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~ 85 (433)
.+++|+|.|++||||||+++.||++||+.|++++.+++...+..+..+.
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~ 81 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVS 81 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCC
Confidence 4479999999999999999999999999999999998766555555554
No 179
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.74 E-value=4.7e-09 Score=105.97 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=89.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
.+++.+++|.||. ..++++++++..+|++++|+|-+|||||||.|+|++-+ |..++++..+.....
T Consensus 8 ll~~~~i~K~Fgg----------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp 77 (500)
T COG1129 8 LLELRGISKSFGG----------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP 77 (500)
T ss_pred eeeeecceEEcCC----------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH
Confidence 4789999999998 66888999999999999999999999999999999988 888888887753322
Q ss_pred ccc--cccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc
Q psy16778 78 IDK--MSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN 131 (433)
Q Consensus 78 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~ 131 (433)
... .....+||+....+.+...+++...........+++........++.+...
T Consensus 78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l 133 (500)
T COG1129 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133 (500)
T ss_pred HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc
Confidence 222 333567788777777777777765544333234555555555556666654
No 180
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.3e-09 Score=98.30 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=63.1
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE------EeCCCCCc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKF------IDGDHLHP 74 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~------id~D~~~~ 74 (433)
|++++.||...-++- .+-+..++++++.|++.+|+||+|||||||+..|+++-++.+ +++.++..
T Consensus 2 ~~L~I~dLhv~v~~~---------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 2 MMLEIKDLHVEVEGK---------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE 72 (251)
T ss_pred ceeEEeeeEEEecCc---------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence 378899998888751 135667889999999999999999999999999999875555 44444432
Q ss_pred c--ccccccccCCCCCCcCChhHHHH
Q psy16778 75 Q--SNIDKMSAKQPLNDEDRRPWLNN 98 (433)
Q Consensus 75 ~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
- ....+......||.+.+.+..+.
T Consensus 73 l~~~ERAr~GifLafQ~P~ei~GV~~ 98 (251)
T COG0396 73 LSPDERARAGIFLAFQYPVEIPGVTN 98 (251)
T ss_pred CCHhHHHhcCCEEeecCCccCCCeeH
Confidence 1 11222333466788776665543
No 181
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=5.7e-09 Score=103.20 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=88.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. -..+.++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++....
T Consensus 6 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~- 74 (351)
T PRK11432 6 FVVLKNITKRFGS----------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS- 74 (351)
T ss_pred EEEEEeEEEEECC----------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence 6889999999985 23567788999999999999999999999999999966 77778776664321
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
......++.||+...++.++..+++...+...+.+ .........+.+.... +.-+++..+..+....++|-
T Consensus 75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~----~~~~~~~v~~~l~~~g--l~~~~~r~~~~LSgGq~QRV 145 (351)
T PRK11432 75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP----KEERKQRVKEALELVD--LAGFEDRYVDQISGGQQQRV 145 (351)
T ss_pred HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC----HHHHHHHHHHHHHHcC--CchhhcCChhhCCHHHHHHH
Confidence 12234678888876666666666665543322110 0000112223333322 23345666666666666664
No 182
>KOG4238|consensus
Probab=98.73 E-value=1.3e-08 Score=96.55 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=105.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeE--EeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKF--IDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~--id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
-+|-.|+++|.||+||||++-.|.+.+ |+++ +|+|+++. ++-.+..|+.++.++..+++.++.+-...+|
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirh-----gl~knlgfs~edreenirriaevaklfadag 122 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRH-----GLNKNLGFSPEDREENIRRIAEVAKLFADAG 122 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhh-----hhhhccCCCchhHHHHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999877 7776 56677653 3344667788888888899988888777777
Q ss_pred CcEEEEcCcccHHHHHH---HHhcCC--eEEEEEEcCHHHHHHHHHH------hhCCCCCHHhHHHHHhhccCCCCCCCC
Q psy16778 111 LTGVLVCSALRRNYRDI---IRNNNR--VVFIYLKAEFGVILSRLQK------RAEHFMPADLLESQFQTLEEPDPLVEP 179 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~---l~~~~~--~~vv~L~~~~e~l~~Rl~~------R~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (433)
-.|+-+.-.....-|.. +.+..+ ++.|+++++.+++..|--+ |.+......-+.. .++++. .
T Consensus 123 lvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids---~ye~pe----~ 195 (627)
T KOG4238|consen 123 LVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDS---DYEKPE----T 195 (627)
T ss_pred ceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccccccccc---ccCCCC----C
Confidence 54444433323333333 333333 8899999999999888422 3222222111222 233333 2
Q ss_pred CeEEEccC-CCHHHHHHHHhcCCCCC
Q psy16778 180 DVRTVSVN-EPLEGIVSKSAIMPPTR 204 (433)
Q Consensus 180 ~~~~Id~~-~~~ee~~~~i~~~l~~~ 204 (433)
..++++++ .++.+++.++.+.|..+
T Consensus 196 ~e~vl~t~~~~v~~cvqqvve~lq~~ 221 (627)
T KOG4238|consen 196 PERVLKTNLSTVSDCVQQVVELLQEQ 221 (627)
T ss_pred hhHHhhcCCchHHHHHHHHHHHHHhc
Confidence 66888888 88999999888877654
No 183
>PTZ00301 uridine kinase; Provisional
Probab=98.73 E-value=3e-07 Score=84.19 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----C---CeEEeCCCCCccccccc-ccc-CCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL----G---VKFIDGDHLHPQSNIDK-MSA-KQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l----g---~~~id~D~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
..+|+|.|+|||||||+++.|++++ | +..+..|.++....... ... ...+..+....+ ..+.+.+..+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~-~~l~~~l~~L~~ 81 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEH-DLLTTHLRELKS 81 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCH-HHHHHHHHHHHc
Confidence 4789999999999999999998776 2 34677888764321100 001 112222111111 112222222111
Q ss_pred C-----------------------CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC--CCCCHHhH
Q psy16778 109 D-----------------------NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE--HFMPADLL 163 (433)
Q Consensus 109 ~-----------------------~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~--~~~~~~~l 163 (433)
. ...+||.-|... .+...+.+.. .+.|||+++.++++.|..+|.- +-...+..
T Consensus 82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l~~~~l~~l~-D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v 159 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-FTNAELRNEM-DCLIFVDTPLDICLIRRAKRDMRERGRTFESV 159 (210)
T ss_pred CCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-hCCHHHHHhC-CEEEEEeCChhHHHHHHHhhhHHhcCCCHHHH
Confidence 0 123444333322 1222343333 4789999999999998877752 11223333
Q ss_pred HHHHhh--------ccCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778 164 ESQFQT--------LEEPDPLVEPDVRTVSVNEPLEGIVSKS 197 (433)
Q Consensus 164 ~~~~~~--------~~~~~~~~~~~~~~Id~~~~~ee~~~~i 197 (433)
..++.. +-++. +..++++|......+..+..+
T Consensus 160 ~~~~~~~v~~~~~~~I~p~--k~~ADiIi~~~~~~~~~~~~~ 199 (210)
T PTZ00301 160 IEQYEATVRPMYYAYVEPS--KVYADIIVPSWKDNSVAVGVL 199 (210)
T ss_pred HHHHHHhhcccHHHHcCcc--ccCCcEEEcCCCcchHHHHHH
Confidence 333322 33333 566889888765544444433
No 184
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.73 E-value=2.5e-07 Score=84.28 Aligned_cols=168 Identities=20% Similarity=0.232 Sum_probs=95.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccc---c-C-CCCCCcCCh-----hHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMS---A-K-QPLNDEDRR-----PWLNNINRI 102 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~---~-~-~~~~~~~~~-----~~~~~~~~~ 102 (433)
.+|+.|+|-|.=||||||+++.|++.+ |+.++-+-.-........+. . + ..++..... .....++..
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999998 55444332221110001100 0 1 111111110 111235666
Q ss_pred HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCC---CCCHH-
Q psy16778 103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEH---FMPAD- 161 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~---~~~~~- 161 (433)
+...+..|..||.|-.. ....+...+.+... ++++||++++++..+|+.+|+.. ....+
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~ 160 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD 160 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence 77777777545544211 22233333322221 79999999999999999999653 11122
Q ss_pred -hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 162 -LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 162 -~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
......+.+.+.........++||++.+++++.+.|.+.+..
T Consensus 161 ~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~ 203 (208)
T COG0125 161 EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKE 203 (208)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 233333334333210111468899999999999988776543
No 185
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.72 E-value=6.4e-08 Score=88.20 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccccc-ccccCCCCC--CcCChhHHHHHHHHHHHhhh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNID-KMSAKQPLN--DEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 108 (433)
..+|..++|.|+|||||||+++.+...+ ++.+|+.|.+....... .+....+.. ...........+.++.....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~ 91 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE 91 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999986 78899999986432111 100000000 00111111233445666677
Q ss_pred CCCcEEEEcCcccHHH----HHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 109 DNLTGVLVCSALRRNY----RDIIRNNNR-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 109 ~~~~~Vi~~~~~~~~~----~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
++.++|++++...+.. .+.+++.+- ..++++.++++....|..+|-
T Consensus 92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 8889999987754333 345555443 778999999999999998884
No 186
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=5.3e-09 Score=103.65 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=87.4
Q ss_pred ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
+++++++++.| +. ...+.+.++++.+|.+++|+|+|||||||+.++|++.+ |..++++.++....
T Consensus 3 ~l~i~~l~~~~~~~----------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~ 72 (356)
T PRK11650 3 GLKLQAVRKSYDGK----------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE 72 (356)
T ss_pred EEEEEeEEEEeCCC----------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC
Confidence 58899999999 54 23567788999999999999999999999999999965 77777776654321
Q ss_pred cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
. .....++.||+...++.++..+++.......+.. .........+.+...+ +--+++..+..+....++|-
T Consensus 73 ~-~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----~~~~~~~~~~~l~~~g--L~~~~~~~~~~LSgGq~QRv 143 (356)
T PRK11650 73 P-ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP----KAEIEERVAEAARILE--LEPLLDRKPRELSGGQRQRV 143 (356)
T ss_pred H-HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC----HHHHHHHHHHHHHHcC--ChhHhhCChhhCCHHHHHHH
Confidence 1 1234678888876666666666665443221100 0000112233344332 23345666666666666664
No 187
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=7.3e-09 Score=103.33 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=90.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++++++.|+. ...++++++++.+|.+++|+|+|||||||+.+.|++.. |..++++..+.....
T Consensus 19 ~l~l~~v~~~~~~----------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 19 LLEIRNLTKSFDG----------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred eEEEEeEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5789999999975 23566777999999999999999999999999999865 667777766532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.....++.||+...++.++..+++...+...+.. .........+.+.... +.-+++..+..+....++|-
T Consensus 89 -~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----~~~~~~~v~~~l~~l~--L~~~~~~~~~~LSgGq~QRV 158 (377)
T PRK11607 89 -YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP----KAEIASRVNEMLGLVH--MQEFAKRKPHQLSGGQRQRV 158 (377)
T ss_pred -HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcC--CchhhcCChhhCCHHHHHHH
Confidence 2234688898877777777777765543322210 0001112223333332 33456777777777776664
No 188
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.70 E-value=7.2e-09 Score=103.25 Aligned_cols=136 Identities=13% Similarity=0.138 Sum_probs=88.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++++++.|+. -..+.++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++.....
T Consensus 14 ~L~l~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 14 LVELRGISKSFDG----------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred eEEEEEEEEEECC----------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5789999999975 23566778999999999999999999999999999966 667787776642111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.....++.||+...++.++..+++...+...+.+ .........+.+.... +.-+++..+..+....++|-
T Consensus 84 -~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----~~~~~~~~~~~l~~~~--l~~~~~~~p~~LSgGq~QRV 153 (375)
T PRK09452 84 -ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP----AAEITPRVMEALRMVQ--LEEFAQRKPHQLSGGQQQRV 153 (375)
T ss_pred -HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHHH
Confidence 1234688888876666666777765543322210 0000112223333322 33456666777777766664
No 189
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.68 E-value=1.3e-08 Score=87.38 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=37.7
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.-+++.|++..+|..|+|+|||||||||+.|.++... |..++.+.++
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v 67 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV 67 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc
Confidence 3567888999999999999999999999999999743 4444444443
No 190
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.66 E-value=2.4e-08 Score=97.87 Aligned_cols=83 Identities=43% Similarity=0.547 Sum_probs=74.4
Q ss_pred HHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcE
Q psy16778 322 LVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKA 401 (433)
Q Consensus 322 ~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~a 401 (433)
-.+.|+++|...+.+|+ +++++|++....+ ||+|+..++..+.++++||.++||++
T Consensus 86 ~a~~A~~a~~~~i~s~~-------------------gs~~ie~~~~~~~-----~q~y~~~~R~~~~~~~~~a~n~G~~~ 141 (360)
T COG1304 86 NAKLAAAAGEPFILSTV-------------------GSQRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQ 141 (360)
T ss_pred HHHHHHHcCCCeeeecc-------------------ccCcHHHhhcCcc-----hhhhhHHHHHhhHHHHHHHHhcCCcc
Confidence 34556678999999999 8899999987644 99999999999999999999999999
Q ss_pred EEEecCCCCCCCchhhhhcCCCCCCCC
Q psy16778 402 LVLTVDTNVFGTRYADIRNKFNMPSHL 428 (433)
Q Consensus 402 ivlTvD~~~~g~r~~~~r~~~~~~~~~ 428 (433)
+++|||+|+.|+|++|.++++..|+..
T Consensus 142 lv~t~d~~~~~~r~~d~~~~i~a~~~~ 168 (360)
T COG1304 142 LVLTVDSPVGGERERDAVNGISAPALA 168 (360)
T ss_pred eeeccCccchHHHHHHHHhccCCCccc
Confidence 999999999999999999999888543
No 191
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.66 E-value=1.4e-07 Score=84.40 Aligned_cols=31 Identities=45% Similarity=0.699 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKF 66 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~ 66 (433)
+..+.|+|-|+.|+||||+++.||+++|..+
T Consensus 2 ~~~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 2 NVAMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred CcccEEEEecccccCHHHHHHHHHHHhCCce
Confidence 3468999999999999999999999999654
No 192
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.66 E-value=1e-07 Score=86.35 Aligned_cols=28 Identities=43% Similarity=0.705 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
.|+|.|+.||||||+++.|++.+|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999998887655
No 193
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.66 E-value=1.2e-08 Score=99.27 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=63.6
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 3 ~~i~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 3 VAIDLVGVSKSYGD----------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA 72 (303)
T ss_pred cEEEEEeEEEEeCC----------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH
Confidence 57899999999975 33677888999999999999999999999999999865 55666655442211
Q ss_pred cccccccCCCCCCcCChhHHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.......++.+|+......++..+++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l 98 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENL 98 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHH
Confidence 11122346666664433333444443
No 194
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.9e-08 Score=93.12 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=60.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+......
T Consensus 1 i~~~~~~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKYGD----------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEECC----------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHH
Confidence 468899999975 23677888999999999999999999999999999865 5556665443211101
Q ss_pred cccccCCCCCCcCChhHHHHHHHH
Q psy16778 79 DKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.....++.+++..........+++
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHH
Confidence 112345666664433333333333
No 195
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.65 E-value=1.7e-08 Score=99.41 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=87.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
|+++++|++.|+... -....+.++++++.+|.+++|+|+|||||||+.+.|+..+ |...+++.++.....
T Consensus 1 mI~~~~lsk~y~~~~------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQGT------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCCC------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 478999999996311 0124678888999999999999999999999999999966 777777766542110
Q ss_pred ----ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 78 ----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
......++.+|........+..+++.......+.. .........+.+...+ +.-+++..+..+....++|
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~v~e~l~~vg--L~~~~~~~~~~LSgGqkQR 148 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----KDEIKRKVTELLALVG--LGDKHDSYPSNLSGGQKQR 148 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHH
Confidence 01224578888765555455566655443222210 0001112234444432 2334566677777776666
Q ss_pred h
Q psy16778 154 A 154 (433)
Q Consensus 154 ~ 154 (433)
-
T Consensus 149 V 149 (343)
T TIGR02314 149 V 149 (343)
T ss_pred H
Confidence 4
No 196
>PLN02348 phosphoribulokinase
Probab=98.65 E-value=5e-07 Score=89.06 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC--------------------eEEeCCCCCccccccccccCCCCCCcCChhH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGV--------------------KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW 95 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~--------------------~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (433)
+++.+|+|.|.|||||||+++.|++.+|. .+|..|+++..........+..+-++.. ..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a-~d 125 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA-NN 125 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc-cc
Confidence 45679999999999999999999999852 4788888863211111112222222211 12
Q ss_pred HHHHHHHHHHhhhC----------------------CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 96 LNNINRIIHQLNVD----------------------NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 96 ~~~~~~~~~~~~~~----------------------~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
++.+.+.+..+... ...+||.-|- ...+.+.+.+.. .+.|||+++.++++.|..+|
T Consensus 126 fDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGl-h~L~~e~lr~l~-D~~IyVd~~~dvrl~RRI~R 203 (395)
T PLN02348 126 FDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGL-HPMYDERVRDLL-DFSIYLDISDDVKFAWKIQR 203 (395)
T ss_pred HHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEech-hhccCccccccC-cEEEEEECCHHHHHHHHHHh
Confidence 33344444433321 1123333332 111122232322 58999999999986665544
Q ss_pred hC--CCCCHHhHHHHHhhccCC-----CCCCCCCeEEEccC
Q psy16778 154 AE--HFMPADLLESQFQTLEEP-----DPLVEPDVRTVSVN 187 (433)
Q Consensus 154 ~~--~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~Id~~ 187 (433)
.- +-...+.....+..+.+. ...+..++++|+.-
T Consensus 204 D~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 204 DMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred hHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 31 112333333344333221 11255677887764
No 197
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.3e-08 Score=101.43 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=66.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
.++++++++.|+. ...++++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++.....
T Consensus 3 ~l~i~~l~~~~~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAYGD----------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEeCC----------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence 5899999999975 23677888999999999999999999999999999965 666776655432111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.....++.+|+....+.++..+++..
T Consensus 73 -~~~~i~~v~Q~~~l~~~~tv~eni~~ 98 (369)
T PRK11000 73 -AERGVGMVFQSYALYPHLSVAENMSF 98 (369)
T ss_pred -hHCCEEEEeCCcccCCCCCHHHHHHh
Confidence 12235777777555444455555543
No 198
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.64 E-value=1.4e-08 Score=85.45 Aligned_cols=90 Identities=16% Similarity=0.001 Sum_probs=62.8
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHLH 73 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~~ 73 (433)
|++.+.+|+...+++|+++. +++++.+|+++-|+|||||||||+...+.+.+ |...++..++.
T Consensus 1 ~~l~l~nvsl~l~g~cLLa~----------~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~ 70 (213)
T COG4136 1 GMLCLKNVSLRLPGSCLLAN----------VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70 (213)
T ss_pred CceeeeeeeecCCCceEEEe----------eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc
Confidence 57889999999999886444 44569999999999999999999999999988 33344443332
Q ss_pred ccccccccccCCCCCCcCChhHHHHHHH
Q psy16778 74 PQSNIDKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
.-. ......|+.||++-.++.+..-++
T Consensus 71 ~lP-a~qRq~GiLFQD~lLFphlsVg~N 97 (213)
T COG4136 71 MLP-AAQRQIGILFQDALLFPHLSVGQN 97 (213)
T ss_pred ccc-hhhhheeeeecccccccccccccc
Confidence 111 122345888888665555544333
No 199
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.64 E-value=1.3e-08 Score=98.96 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=66.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++.....
T Consensus 7 ~i~i~~l~k~~~~----------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 7 PIDFRNVEKRYGD----------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred eEEEEeEEEEECC----------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH
Confidence 6889999999985 34778888999999999999999999999999999976 666777665543211
Q ss_pred ccccccCCCCCCcCChhHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
......++.+++......++..+++
T Consensus 77 ~~~~~ig~v~q~~~~~~~~tv~e~l 101 (306)
T PRK13537 77 HARQRVGVVPQFDNLDPDFTVRENL 101 (306)
T ss_pred HHHhcEEEEeccCcCCCCCcHHHHH
Confidence 1223457777765544444444443
No 200
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.64 E-value=3e-08 Score=87.68 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=64.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
|+.+.+++|+|+. + .+++.+++++...|.+.+|.|++||||||+.|+|+..+ |...+++=+..+.+.
T Consensus 1 Ml~v~~l~K~y~~--~-------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYGS--K-------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred CeeeeehhhhccC--H-------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH
Confidence 5788999999986 1 34788999999999999999999999999999999987 888888888776655
Q ss_pred ccccccCCCC
Q psy16778 78 IDKMSAKQPL 87 (433)
Q Consensus 78 ~~~~~~~~~~ 87 (433)
......|..+
T Consensus 72 ~vrr~IGVl~ 81 (245)
T COG4555 72 FVRRKIGVLF 81 (245)
T ss_pred HHhhhcceec
Confidence 5555567666
No 201
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.64 E-value=2.4e-08 Score=90.37 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|+.+||. ...+.+++++.++|++++|+|++|+||||+.+.++... |...+++.++.....
T Consensus 3 mL~v~~l~~~YG~----------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGYGK----------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecccc----------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence 7899999999998 56777888999999999999999999999999999866 777888888865433
Q ss_pred ccccccC--CCCCCcCChhHHHHHHHHHHHhh
Q psy16778 78 IDKMSAK--QPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 78 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
-...+.| ++++...-++.++..++......
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 2333344 44444455566677777765543
No 202
>PLN02165 adenylate isopentenyltransferase
Probab=98.64 E-value=3.9e-07 Score=88.19 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC--ccccc------cccccCCC-----CCCcC--C---hhHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH--PQSNI------DKMSAKQP-----LNDED--R---RPWLN 97 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~--~~~~~------~~~~~~~~-----~~~~~--~---~~~~~ 97 (433)
.++.+|+|+|++||||||++..|++.++..+++.|.+. ....+ .....+.+ +-.+. . ..|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~ 120 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS 120 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHH
Confidence 46679999999999999999999999999999999772 11000 00011222 11111 1 22333
Q ss_pred HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc---------------------CCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 98 NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN---------------------NRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~---------------------~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.....+......+...|+.+|. ..|.+.|... .+..+++|+.+.+++.+|+.+|-
T Consensus 121 ~a~~~I~~i~~~~~~PI~vGGT--glYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv 196 (334)
T PLN02165 121 LASLSISEITSRQKLPIVAGGS--NSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV 196 (334)
T ss_pred HHHHHHHHHHHCCCcEEEECCh--HHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence 4445555655566555554432 2222222220 11467899999999999999996
No 203
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.64 E-value=9.4e-08 Score=85.89 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-----------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN----------------- 97 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 97 (433)
+++.|+|+||+|||||||++.|.+.+. +.+.-....+...... ..|..+..-....+.+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E--~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGE--VDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS---TTTSEEE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccc--cCCcceEEEeechhhhhhccccEEEEeeecchh
Confidence 467899999999999999999998774 2222222222211100 1122211111111111
Q ss_pred --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778 98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTLEEP 173 (433)
Q Consensus 98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~ 173 (433)
.....+.....+|..+|+++.. .....|++... .++|||..+ .+.+.+|+.+|+. ...+.+..+....+..
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~~---~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~--~~~~~i~~r~~~~~~~ 153 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVDP---EGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD--ESEEEIEERLERAEKE 153 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEETH---HHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH--CHHHHHHHHHHHHHHH
T ss_pred hhhccchhhHhhhcCCcEEEEccH---HHHHHHHhcccCceEEEEEccchHHHHHHHhcccc--ccHHHHHHHHHHHHHH
Confidence 1133355666778888888773 33344555433 789999765 7888888877653 1122233222221111
Q ss_pred C-CCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 174 D-PLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 174 ~-~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
. .+.+ .+.+|.++ +.++...++...
T Consensus 154 ~~~~~~-fd~vi~n~-~le~~~~~l~~i 179 (183)
T PF00625_consen 154 FEHYNE-FDYVIVND-DLEEAVKELKEI 179 (183)
T ss_dssp HGGGGG-SSEEEECS-SHHHHHHHHHHH
T ss_pred HhHhhc-CCEEEECc-CHHHHHHHHHHH
Confidence 1 0011 44666664 788888877654
No 204
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1.9e-08 Score=94.44 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=52.1
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|.+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 1 ~~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (239)
T cd03296 1 MSIEVRNVSKRFGD----------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA 66 (239)
T ss_pred CEEEEEeEEEEECC----------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 67899999999975 23677888999999999999999999999999999965 5556665443
No 205
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.63 E-value=1.4e-08 Score=98.63 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=64.7
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|.++++++++.|+. ...+++.++++.+|.+++|+|++||||||+.++|++.+ |...+++.++....
T Consensus 1 ~~l~~~~l~~~~~~----------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~ 70 (301)
T TIGR03522 1 MSIRVSSLTKLYGT----------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP 70 (301)
T ss_pred CEEEEEEEEEEECC----------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh
Confidence 77899999999975 33677888999999999999999999999999999865 66667665543211
Q ss_pred cccccccCCCCCCcCChhHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
.......++.++.......+...++
T Consensus 71 ~~~~~~ig~~~q~~~l~~~~tv~e~ 95 (301)
T TIGR03522 71 KEVQRNIGYLPEHNPLYLDMYVREY 95 (301)
T ss_pred HHHHhceEEecCCCCCCCCCcHHHH
Confidence 1112235666766544333344333
No 206
>PRK07667 uridine kinase; Provisional
Probab=98.63 E-value=3.9e-07 Score=82.57 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ 75 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~ 75 (433)
+..+|+|.|++||||||+++.|++.+ +..+++.|++...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 34799999999999999999999987 3558999997643
No 207
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.62 E-value=2.3e-08 Score=96.53 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
.+++.+|++.|+ . ...++++++++.+|.+++|+|++||||||+.++|++.. |...+++.+.....
T Consensus 4 ~i~~~~l~k~~~~~----------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKYGGD----------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEeCCC----------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH
Confidence 567799999999 4 45888999999999999999999999999999999976 66677775554321
Q ss_pred cccccccCCCCCCcCChhHHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.......|+.++.+...+.++..+.+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l 99 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENL 99 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHH
Confidence 11223457888877666666555443
No 208
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.8e-08 Score=91.50 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=49.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 64 (213)
T cd03259 1 LELKGLSKTYGS----------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV 64 (213)
T ss_pred CeeeeeEEEeCC----------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 468899999974 23678888999999999999999999999999999865 5566666544
No 209
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.61 E-value=2.3e-08 Score=91.12 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++++|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 1 ml~~~~l~~~~~~----------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 65 (200)
T PRK13540 1 MLDVIELDFDYHD----------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65 (200)
T ss_pred CEEEEEEEEEeCC----------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc
Confidence 4789999999975 23677888999999999999999999999999999975 6667776655
No 210
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.61 E-value=1.7e-07 Score=82.54 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=48.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+.. ..+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...++..++
T Consensus 1 l~~~~l~~~~~~~----------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 64 (163)
T cd03216 1 LELRGITKRFGGV----------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV 64 (163)
T ss_pred CEEEEEEEEECCe----------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 4688999999752 3567788999999999999999999999999999865 5556655444
No 211
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.61 E-value=2.4e-08 Score=92.16 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 67 (216)
T TIGR00960 1 MIRFEQVSKAYPGGH--------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDL 67 (216)
T ss_pred CeEEEEEEEEecCCC--------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeh
Confidence 478999999996421 12567788999999999999999999999999999965 5566665443
No 212
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.61 E-value=1.7e-08 Score=99.40 Aligned_cols=90 Identities=16% Similarity=0.122 Sum_probs=64.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++.....
T Consensus 41 ~i~i~nl~k~y~~----------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 41 AIDLAGVSKSYGD----------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred eEEEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence 5889999999986 34778888999999999999999999999999999976 666777665532211
Q ss_pred ccccccCCCCCCcCChhHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
......++.+++......++..++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~ 134 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVREN 134 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHH
Confidence 112245666766444333344333
No 213
>PRK13974 thymidylate kinase; Provisional
Probab=98.60 E-value=1.1e-06 Score=80.95 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC--------eEEeCCCCCcccc---ccc-cc--cCC-CCCCcCCh-----hHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGV--------KFIDGDHLHPQSN---IDK-MS--AKQ-PLNDEDRR-----PWL 96 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~--------~~id~D~~~~~~~---~~~-~~--~~~-~~~~~~~~-----~~~ 96 (433)
.|++|+|.|+.||||||+++.|++.+.. .++.+..-..... +.. +. .+. ........ ...
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998831 1111111000000 000 00 000 00000000 001
Q ss_pred HHHHHHHHHhhhCCCcEEE-EcC----------c--ccHHHHHHHHh---c-CC-eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778 97 NNINRIIHQLNVDNLTGVL-VCS----------A--LRRNYRDIIRN---N-NR-VVFIYLKAEFGVILSRLQKRAEHFM 158 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~~Vi-~~~----------~--~~~~~~~~l~~---~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~ 158 (433)
..+...+...+..|. +|| |-. + ....+...+.. . .. ..++||++|++++.+|+..|.....
T Consensus 82 ~~~~~~i~~~l~~g~-~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~ 160 (212)
T PRK13974 82 QHVSKIIRPALENGD-WVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI 160 (212)
T ss_pred HHHHHHHHHHHHCCC-EEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence 122334555566664 444 311 1 12223233322 1 12 7899999999999999988753211
Q ss_pred C---HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 159 P---ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 159 ~---~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
. ..........++... .+....+||.+.+++++.++|.+.+.
T Consensus 161 e~~~~~y~~~v~~~y~~y~--~~~~~~~Ida~~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 161 EAEGIEFLERVAEGFALIA--EERNWKVISADQSIETISNEIKETLL 205 (212)
T ss_pred hhhhHHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111111122221111 22245678888999999988876653
No 214
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=8.4e-07 Score=80.47 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe---EEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhh--
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK---FIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNV-- 108 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~---~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 108 (433)
.+..+|+|.|+|||||||+++.|...++.. .|..|+++........ .....+..+..+.+ +.+.+.+..+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~-dLl~~~L~~L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDL-DLLIEHLKDLKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcH-HHHHHHHHHHHcCC
Confidence 345799999999999999999999999744 7888988753211111 11222222221111 111122221111
Q ss_pred ---------------------CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhHHH
Q psy16778 109 ---------------------DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLLES 165 (433)
Q Consensus 109 ---------------------~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l~~ 165 (433)
....+||..|.. .-+.+.+++.. .+.||++++.+++..|-..|.-. -...+..-.
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~-~l~d~~lr~~~-d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~ 162 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGIL-LLYDERLRDLM-DLKIFVDTDADVRLIRRIKRDVQERGRDLESVIE 162 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccc-ccccHHHHhhc-CEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 123455555542 22223444443 48999999999988876555311 112222222
Q ss_pred HH--------hhccCCCCCCCCCeEEEccC
Q psy16778 166 QF--------QTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 166 ~~--------~~~~~~~~~~~~~~~~Id~~ 187 (433)
++ ..+-++. ++.++++|...
T Consensus 163 qy~~~vkp~~~~fIept--k~~ADiiip~~ 190 (218)
T COG0572 163 QYVKTVRPMYEQFIEPT--KKYADIIIPSG 190 (218)
T ss_pred HHHHhhChhhhhccCcc--cccceEEeecC
Confidence 22 2222333 56688888875
No 215
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.60 E-value=2.7e-08 Score=90.99 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=51.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++++|+. -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~ 65 (204)
T PRK13538 1 MLEARNLACERDE----------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI 65 (204)
T ss_pred CeEEEEEEEEECC----------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 4789999999975 23677888999999999999999999999999999975 6666666544
No 216
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.60 E-value=1.9e-08 Score=84.34 Aligned_cols=109 Identities=23% Similarity=0.196 Sum_probs=54.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc-cccccccCCCCCCcCChhHHHHHHHHHHHh---hhCCCcEEEE
Q psy16778 41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS-NIDKMSAKQPLNDEDRRPWLNNINRIIHQL---NVDNLTGVLV 116 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Vi~ 116 (433)
|+|+|++||||||+++.|+++++..+.+........ ..... ....-...........+.+.+... ...+..+||+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid 79 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDN-PDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIID 79 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCH-HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCccccccc-chhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEe
Confidence 789999999999999999999732221111100000 00000 000001111122222333333332 3445677777
Q ss_pred cCcccHHHHHHHHhcCCeEE-EEEEcCHHHHHHHHHHhhC
Q psy16778 117 CSALRRNYRDIIRNNNRVVF-IYLKAEFGVILSRLQKRAE 155 (433)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~v-v~L~~~~e~l~~Rl~~R~~ 155 (433)
........ ..+. ... |||+||++++.+|+..|..
T Consensus 80 ~~~~~~~~-~~~~----~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 80 GILSNLEL-ERLF----DIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp ESSEEECE-TTEE----EESSEEEE--HHHHHHHHHCTTT
T ss_pred cccchhcc-cccc----eeeEEEEECCHHHHHHHHHhCCC
Confidence 65422110 0000 223 9999999999999999874
No 217
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.59 E-value=3.2e-08 Score=90.79 Aligned_cols=61 Identities=25% Similarity=0.183 Sum_probs=52.0
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
|+++++++++.|+. ...+.+.++++++|.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 1 m~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 65 (207)
T PRK13539 1 MMLEGEDLACVRGG----------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65 (207)
T ss_pred CEEEEEeEEEEECC----------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 78999999999975 23577888999999999999999999999999999965 666666544
No 218
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.9e-08 Score=92.90 Aligned_cols=90 Identities=21% Similarity=0.190 Sum_probs=61.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc--
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-- 76 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-- 76 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++....
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSFGG----------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh
Confidence 468899999975 23677888999999999999999999999999999866 55666665443211
Q ss_pred --cccccccCCCCCCcCChhHHHHHHHH
Q psy16778 77 --NIDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.......++.++.......++..+++
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHH
Confidence 01112346666665433334444444
No 219
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.58 E-value=2.6e-08 Score=92.06 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=57.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++++++.|+.... ....+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 1 ~l~~~~v~~~~~~~~~------~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 74 (218)
T cd03266 1 MITADALTKRFRDVKK------TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA 74 (218)
T ss_pred CeEEEEEEEecCCCCc------cceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHH
Confidence 4788999999975210 013677888999999999999999999999999999865 556665544321111
Q ss_pred ccccccCCCCCCcC
Q psy16778 78 IDKMSAKQPLNDED 91 (433)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (433)
......++.++...
T Consensus 75 ~~~~~i~~~~q~~~ 88 (218)
T cd03266 75 EARRRLGFVSDSTG 88 (218)
T ss_pred HHHhhEEEecCCcc
Confidence 11123456666543
No 220
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.58 E-value=6.2e-08 Score=90.66 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=49.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 64 (236)
T cd03219 1 LEVRGLTKRFGG----------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI 64 (236)
T ss_pred CeeeeeEEEECC----------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEEC
Confidence 467899999974 23677888999999999999999999999999999865 6666766544
No 221
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.58 E-value=2.9e-08 Score=85.55 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=96.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc---
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--- 75 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--- 75 (433)
+++.+++++.|... -+...+..+++.++.|+.++|+|+|||||||+...||..- |-..+.+..+..-
T Consensus 7 i~~~~l~ktvg~~~------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 7 IEVHHLSKTVGQGE------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 (228)
T ss_pred eehhhhhhhhcCCC------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence 56778888887522 2344678899999999999999999999999999999843 6666766666421
Q ss_pred --ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
...+....|+.||.....+.++.++++...+...|.+ ........++.+...+ +---|+-.|..+....+||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~----~~~~~~~A~~lL~~vG--Lg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES----SADSRAGAKALLEAVG--LGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc----cccHHHHHHHHHHHhC--cccccccCccccCchHHHH
Confidence 1122344688999888888899999998887766631 1112233455665553 4444555666666666666
Q ss_pred h
Q psy16778 154 A 154 (433)
Q Consensus 154 ~ 154 (433)
.
T Consensus 155 V 155 (228)
T COG4181 155 V 155 (228)
T ss_pred H
Confidence 4
No 222
>PRK09169 hypothetical protein; Validated
Probab=98.58 E-value=5.9e-08 Score=110.45 Aligned_cols=140 Identities=7% Similarity=-0.165 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHH-HHHHHHhhhCCCcEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI-NRIIHQLNVDNLTGVL 115 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Vi 115 (433)
.+..|+|+|++|+||||+++.|++++++.++|+|..+..... .+...+|.... .++.. .+.+...+. ..+||
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G--rkI~rIFa~eG---~FRe~Eaa~V~Dllr--~~vVL 2181 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG--KKIARIQALRG---LSPEQAAARVRDALR--WEVVL 2181 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC--CCHHHHHHhcC---chHHHHHHHHHHHhc--CCeEE
Confidence 345899999999999999999999999999999998754221 12222232222 34443 344555443 47888
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----H--------HhHHHHHhhccCCCCCCCCC
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----A--------DLLESQFQTLEEPDPLVEPD 180 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~--------~~l~~~~~~~~~~~~~~~~~ 180 (433)
+.++ .....+..|.+.+ ++||+..+.+++.+|+.+..+++.. . ....+.+..+++.| ++.+
T Consensus 2182 STGGGav~~~enr~~L~~~G--lvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLY--EqvA 2257 (2316)
T PRK09169 2182 PAEGFGAAVEQARQALGAKG--LRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLY--EKLQ 2257 (2316)
T ss_pred eCCCCcccCHHHHHHHHHCC--EEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHH--HHhc
Confidence 8766 5677888888885 8999999999999999765443221 1 22333455566665 5667
Q ss_pred eEEEccC
Q psy16778 181 VRTVSVN 187 (433)
Q Consensus 181 ~~~Id~~ 187 (433)
++.|+++
T Consensus 2258 Dl~V~~~ 2264 (2316)
T PRK09169 2258 DLEVAPA 2264 (2316)
T ss_pred CcccccC
Confidence 7888876
No 223
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.57 E-value=6.3e-07 Score=90.00 Aligned_cols=120 Identities=21% Similarity=0.210 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-EEeCCCCCcc-------c-----------ccccccc-CCCCCCcCC---
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQ-------S-----------NIDKMSA-KQPLNDEDR--- 92 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~-~id~D~~~~~-------~-----------~~~~~~~-~~~~~~~~~--- 92 (433)
.++.+|+++|++||||||++..||.++|+. ++++|.+..- . .|..+.. +.....+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 468899999999999999999999999997 6788876320 0 0111100 000000000
Q ss_pred -hhH--------HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEc-CHHHHHHHHHHhhC
Q psy16778 93 -RPW--------LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKA-EFGVILSRLQKRAE 155 (433)
Q Consensus 93 -~~~--------~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~-~~e~l~~Rl~~R~~ 155 (433)
... ...++.++...+..|.++||++....+.+......... .+.+.+.+ +.++..+|...|..
T Consensus 333 vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 333 VLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 011 22356677788889999999998888877664443333 33344444 47888899988863
No 224
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.57 E-value=3.5e-08 Score=92.39 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i 65 (236)
T TIGR03864 1 ALEVAGLSFAYGA----------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL 65 (236)
T ss_pred CEEEEeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence 4788999999974 23677888999999999999999999999999999865 6666766544
No 225
>PRK13976 thymidylate kinase; Provisional
Probab=98.56 E-value=7.3e-07 Score=81.70 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-----eEEeCCCCCcccc---ccccccCC-CCCCcCCh-----hHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGV-----KFIDGDHLHPQSN---IDKMSAKQ-PLNDEDRR-----PWLNNINRIIH 104 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~-----~~id~D~~~~~~~---~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~ 104 (433)
+.|+|.|.-||||||+++.|++.|.- .++-+..-..... +...-.+. ........ .....+.+.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999998832 2221111100000 00000010 01110000 00112344566
Q ss_pred HhhhCCCcEEEEcCc------------ccHHHHHHHHhc----CCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778 105 QLNVDNLTGVLVCSA------------LRRNYRDIIRNN----NRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ 168 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~----~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~ 168 (433)
..+..|..+|.|-.. ....+...+.+. .++++|||++|+++..+|+..++-.....+.+.+..+
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~~ 160 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRK 160 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHHH
Confidence 777777545544211 122333333321 1279999999999999999654321123333443333
Q ss_pred hccCCCCCCCCCeEEEcc---CCC---HHHHHHHHhcCCC
Q psy16778 169 TLEEPDPLVEPDVRTVSV---NEP---LEGIVSKSAIMPP 202 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~Id~---~~~---~ee~~~~i~~~l~ 202 (433)
.|............+|+. ..+ ++++.++|.+.+.
T Consensus 161 ~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~ 200 (209)
T PRK13976 161 GFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLH 200 (209)
T ss_pred HHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHH
Confidence 333322101113455665 234 8899888876653
No 226
>PRK07429 phosphoribulokinase; Provisional
Probab=98.56 E-value=1.7e-06 Score=84.48 Aligned_cols=38 Identities=37% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~ 73 (433)
.++.+|+|+|++||||||+++.|++.++ ..++..|++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 4667999999999999999999999886 5678888875
No 227
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.56 E-value=2.4e-08 Score=87.86 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=75.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC-CCCc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD-HLHP-- 74 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D-~~~~-- 74 (433)
.+++++|+..|+. -.++|++++++..|..-+|+||+|+||||+.-.+..+- |..+++.+ ++..
T Consensus 5 iL~~~~vsVsF~G----------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~ 74 (249)
T COG4674 5 ILYLDGVSVSFGG----------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74 (249)
T ss_pred eEEEeceEEEEcc----------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence 5789999999998 67889999999999999999999999999999999876 77788874 3332
Q ss_pred cccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 75 QSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
...+.....|..||.+.-+..+...++.-....
T Consensus 75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 75 EHRIARAGIGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred HHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence 233445566888998877777776666544433
No 228
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.56 E-value=6e-08 Score=90.40 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=61.0
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
+++++|++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...++..++......
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYYGQ----------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEeCC----------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence 468899999975 23677888999999999999999999999999999876 6667766554321100
Q ss_pred --cccccCCCCCCcCChhHHHHHHH
Q psy16778 79 --DKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
.....++.+++.......+..++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~ 95 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEEN 95 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHH
Confidence 11234566666443333333333
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=3.7e-08 Score=85.46 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=71.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
++.++|+-++||.|. .++-++++.++|.+|-|+|.|||||||+.|.+.=.- |...+.+.++.-..
T Consensus 6 ~l~v~dlHK~~G~~e----------VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRYGEHE----------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhcccch----------hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence 688999999999855 566677779999999999999999999999887422 66667666653110
Q ss_pred -------------cccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 77 -------------NIDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 77 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
...+...++.||..+.|..++.++++++.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa 117 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA 117 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence 01122347888888888888888888765
No 230
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.55 E-value=3.1e-08 Score=98.34 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=85.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCCCcc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHLHPQ 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~~~~ 75 (433)
.+++++|++.|+. ...++++++++..|.+++|+|++||||||+.++|++.+ |...+++.++...
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAYGA----------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEECC----------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC
Confidence 3678999999975 34677888999999999999999999999999999854 5555665554321
Q ss_pred ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 76 SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.. .....++.||+...++.++..+++...+...+.. .........+.+.... +--+++..+..+....++|-
T Consensus 75 ~~-~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~----~~~~~~~v~~~l~~~g--L~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PP-HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP----KADIAERVADALKLVG--LGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred CH-HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhcC--CCchhhCChhhCCHHHHHHH
Confidence 11 1234578888876666666666665443322210 0000112223333332 23345666777776666664
No 231
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.55 E-value=3.2e-08 Score=93.82 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=51.2
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
|+++++++++.|+. ...+.++++++++|.+++|+|++||||||+.+.|++.+ |...+++..
T Consensus 1 ~~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (255)
T PRK11231 1 MTLRTENLTVGYGT----------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP 65 (255)
T ss_pred CEEEEEeEEEEECC----------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEE
Confidence 78999999999975 23677788999999999999999999999999999865 555565543
No 232
>PRK07933 thymidylate kinase; Validated
Probab=98.55 E-value=1.5e-06 Score=79.97 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC------CccccccccccCC--CCC-CcCChh-HH--HHH--HH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL------HPQSNIDKMSAKQ--PLN-DEDRRP-WL--NNI--NR 101 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~------~~~~~~~~~~~~~--~~~-~~~~~~-~~--~~~--~~ 101 (433)
|.|+|.|.-||||||+++.|++.+ |..++-+..- ... .+...-.+. ... .+.... .+ .+. ..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~-~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~ 79 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHAD-LAAEALHGRHGDLADSVYAMATLFALDRAGARD 79 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccH-HHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHH
Confidence 579999999999999999999998 5444322211 110 000100010 000 000000 01 011 12
Q ss_pred HHHHhhhCCCcEEEEcCcc-----------------cHHHHHHHHh---cC--CeEEEEEEcCHHHHHHHHHHhhCC---
Q psy16778 102 IIHQLNVDNLTGVLVCSAL-----------------RRNYRDIIRN---NN--RVVFIYLKAEFGVILSRLQKRAEH--- 156 (433)
Q Consensus 102 ~~~~~~~~~~~~Vi~~~~~-----------------~~~~~~~l~~---~~--~~~vv~L~~~~e~l~~Rl~~R~~~--- 156 (433)
.+...+..|..+|.|-... ...+...+.. .. ++++|||++++++..+|+.+|++.
T Consensus 80 ~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~ 159 (213)
T PRK07933 80 ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDAD 159 (213)
T ss_pred HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCC
Confidence 3555556665444442110 1122222321 11 279999999999999999998631
Q ss_pred -----CCC-HHhHHHHHhhccCCCCC-CCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 157 -----FMP-ADLLESQFQTLEEPDPL-VEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 157 -----~~~-~~~l~~~~~~~~~~~~~-~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
... .+.+....+.+...... .....++||.+.+++++.++|.+.+
T Consensus 160 ~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 160 RARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 111 12222222222221110 0124577888899999999987654
No 233
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.55 E-value=4.4e-08 Score=90.66 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=56.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
+++++|++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++......
T Consensus 1 l~~~~l~~~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKGT--------KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCCCC--------ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHH
Confidence 46789999997411 23577788999999999999999999999999999865 6666666544221111
Q ss_pred cccccCCCCCCcC
Q psy16778 79 DKMSAKQPLNDED 91 (433)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (433)
.....++.+++..
T Consensus 73 ~~~~i~~v~q~~~ 85 (220)
T cd03263 73 ARQSLGYCPQFDA 85 (220)
T ss_pred HhhhEEEecCcCC
Confidence 1122456666543
No 234
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=5.2e-08 Score=91.49 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYKG----------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeCC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 6889999999975 23677888999999999999999999999999999975 5666666554
No 235
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.55 E-value=4.6e-08 Score=89.04 Aligned_cols=60 Identities=22% Similarity=0.097 Sum_probs=49.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (198)
T TIGR01189 1 LAARNLACSRGE----------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL 64 (198)
T ss_pred CEEEEEEEEECC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc
Confidence 468899999975 23677888999999999999999999999999999976 5566666544
No 236
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=5.9e-08 Score=90.63 Aligned_cols=65 Identities=25% Similarity=0.235 Sum_probs=51.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... -.-..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~i~~~~l~~~~~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 69 (233)
T cd03258 1 MIELKNVSKVFGDTG------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69 (233)
T ss_pred CeEEecceEEccCCC------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 478999999997520 0003677888999999999999999999999999999976 6666766554
No 237
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=4.1e-08 Score=97.01 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=64.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
|+++++|++.|+... .....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 1 mi~i~~l~~~y~~~~------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQGG------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCCC------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCH
Confidence 478999999997200 0123677788999999999999999999999999999976 66667665543210
Q ss_pred -cc--cccccCCCCCCcCChhHHHHHHHHH
Q psy16778 77 -NI--DKMSAKQPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 77 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
.. .....++.+++.......+..+++.
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~ 104 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVA 104 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHH
Confidence 00 1123466777654433344444443
No 238
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.54 E-value=6e-08 Score=89.85 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=60.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc-
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN- 77 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~- 77 (433)
+++++|++.|+. -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGYGK----------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeecCC----------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH
Confidence 467899999975 13567788999999999999999999999999999865 666676654432111
Q ss_pred -ccccccCCCCCCcCChhHHHHHHHH
Q psy16778 78 -IDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
......++.+++.......+..+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l 96 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENL 96 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHH
Confidence 1112345666664433333444443
No 239
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.54 E-value=2.6e-08 Score=99.87 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=69.5
Q ss_pred ccccccceeeeccCCcccee--------------eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778 2 AVSNFGNWRYWGMWPPQYVV--------------TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G 63 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g 63 (433)
++++++|++.||.+...+.. +-....++++++++.+|.+++|+|++||||||+.+.|++.+ |
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 58899999999986532211 00012577889999999999999999999999999999976 6
Q ss_pred CeEEeCCCCCcccc--c---cccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 64 VKFIDGDHLHPQSN--I---DKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 64 ~~~id~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
..++++.++..... . .....++.+|.....+..+..+++..
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~ 129 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF 129 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence 67777765532110 0 11235677777554444455555443
No 240
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=3.8e-08 Score=87.60 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=48.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 l~~~~l~~~~~~----------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 64 (173)
T cd03230 1 IEVRNLSKRYGK----------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI 64 (173)
T ss_pred CEEEEEEEEECC----------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 467889999964 23677888999999999999999999999999999965 5555655443
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=1.6e-07 Score=80.11 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=72.2
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc--
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP-- 74 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~-- 74 (433)
|++++.++++.||. .+++-|.+++...|..++|.||||+||||+.|.|.-.- |...|-...+--
T Consensus 1 msirv~~in~~yg~----------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~ 70 (242)
T COG4161 1 MSIQLNGINCFYGA----------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK 70 (242)
T ss_pred CceEEccccccccc----------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccccc
Confidence 78999999999998 34555666889999999999999999999999887522 545554444321
Q ss_pred ---ccccc--ccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 75 ---QSNID--KMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 75 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
...+. +...|+.||....|+.+..+++.++.-
T Consensus 71 ~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap 107 (242)
T COG4161 71 TPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107 (242)
T ss_pred CccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence 11111 234589999999999999998888753
No 242
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=7.3e-08 Score=89.64 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=57.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.+++++|+++|..-...+... ...+++++++++.+|++++|+|.|||||||++|.+.+.+ |..++++.++.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~-~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKR-YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccccCccc-ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 689999999996421111111 356899999999999999999999999999999999866 77888877753
No 243
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.53 E-value=3.3e-08 Score=85.97 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=63.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~ 76 (433)
.++++|++++|..+.-.-+.+. ..+...+|++..++..++|+|.+||||||++++|++.. |...++...+.-. .
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~-~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQT-VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhh-hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 5789999999954332222222 24677888999999999999999999999999999977 7777777766422 1
Q ss_pred cccccccCCCCCCcC
Q psy16778 77 NIDKMSAKQPLNDED 91 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (433)
..+.....++||+++
T Consensus 83 ~~R~k~IRMiFQDpn 97 (267)
T COG4167 83 SFRSKRIRMIFQDPN 97 (267)
T ss_pred HhhhhheeeeecCCc
Confidence 222234467777754
No 244
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=5.2e-08 Score=89.55 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=55.3
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
++++++++.|+. ...++++++++.+| +++|+|++||||||+.+.|++.+ |...+++.++......
T Consensus 1 i~~~~~~~~~~~----------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRYGK----------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEECC----------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHH
Confidence 467899999975 23677888999999 99999999999999999999865 6666666554321101
Q ss_pred cccccCCCCCCcC
Q psy16778 79 DKMSAKQPLNDED 91 (433)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (433)
.....++.+++..
T Consensus 70 ~~~~i~~~~q~~~ 82 (211)
T cd03264 70 LRRRIGYLPQEFG 82 (211)
T ss_pred HHhheEEecCCCc
Confidence 1123455666543
No 245
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.53 E-value=3.6e-08 Score=98.91 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 3 ~L~~~nls~~y~~----------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEFGD----------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEECC----------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH
Confidence 7899999999986 23677788999999999999999999999999999976 66777776553211
Q ss_pred cccccccCCCCCCcCChhHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
.......++.+++......++..++
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~ 97 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQV 97 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHH
Confidence 0112234666665443333333333
No 246
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.53 E-value=3.1e-07 Score=90.18 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=98.8
Q ss_pred hhhcceeecccccCC--CCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC-----
Q psy16778 222 ALKVLRIRPRVMRDL--SKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST----- 291 (433)
Q Consensus 222 a~~~~~l~pr~l~~~--~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~----- 291 (433)
.|++++|.+..|-.+ +++||+|++||++++.||+++|+++. ++.+ -..++++|.+.|+++++.+.+.
T Consensus 22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~ 98 (333)
T TIGR02151 22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDP 98 (333)
T ss_pred CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence 388999999888665 47999999999999999999998653 3333 3459999999999998876651
Q ss_pred ---CCHHHHHHhCCCCcceEEEeeccCHHH-HHHHHHHHHHcCCcEEEEeeeec-ccCccccccccccCCCccchHHHHH
Q psy16778 292 ---TSIEELAEKTPQTTKWFQLYIYRDREI-TKSLVQRAEKAGYKALVLTVDTN-VFGTRYADIRNKFNMPSHLNIEELA 366 (433)
Q Consensus 292 ---~~~eeva~~~~~~~~w~qly~~~d~~~-~~~~~~~A~~ag~~~i~ltvD~~-~~G~r~~~~~~~~~~~~~~s~e~i~ 366 (433)
.++..+.+..++.+....+......+. .....+..+..+..++-+.+..+ ....++.+ + .|.. ---.++.|.
T Consensus 99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~-~-~f~~-~le~i~~i~ 175 (333)
T TIGR02151 99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD-R-NFKG-WLEKIAEIC 175 (333)
T ss_pred hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC-c-CHHH-HHHHHHHHH
Confidence 233334443455554443332221110 11223333344556666554211 11111111 0 0100 001233333
Q ss_pred hhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEec
Q psy16778 367 EKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 367 ~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlTv 406 (433)
+.. .+++..|. .++.+.+++++++|+++|+|+=
T Consensus 176 ~~~-------~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 176 SQL-------SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred Hhc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 322 22222222 2688999999999999999963
No 247
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.53 E-value=1.2e-06 Score=83.67 Aligned_cols=35 Identities=34% Similarity=0.383 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHP 74 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~ 74 (433)
+|+|+|++||||||+++.|++.+ +..++..|++..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc
Confidence 48999999999999999999877 566888998753
No 248
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=5.9e-08 Score=91.19 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=52.1
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 1 ~~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 1 MSIQLNGINCFYGA----------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred CEEEEEeeEEEECC----------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 78999999999975 23677888999999999999999999999999999865 5556665543
No 249
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.52 E-value=6.6e-08 Score=88.69 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=60.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++... ..
T Consensus 1 l~~~~l~~~~~~----------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~ 69 (208)
T cd03268 1 LKTNDLTKTYGK----------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IE 69 (208)
T ss_pred CEEEEEEEEECC----------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HH
Confidence 467899999964 23677888999999999999999999999999999865 5566666544321 01
Q ss_pred cccccCCCCCCcCChhHHHHHHHH
Q psy16778 79 DKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.....++.+++.......+..+++
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~e~l 93 (208)
T cd03268 70 ALRRIGALIEAPGFYPNLTARENL 93 (208)
T ss_pred HHhhEEEecCCCccCccCcHHHHH
Confidence 112345566654333333444443
No 250
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.52 E-value=4.8e-08 Score=89.94 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=49.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~ 64 (213)
T cd03301 1 VELENVTKRFGN----------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64 (213)
T ss_pred CEEEeeEEEECC----------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 468899999975 23577888999999999999999999999999999976 6566766554
No 251
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.51 E-value=7e-08 Score=88.07 Aligned_cols=60 Identities=20% Similarity=0.083 Sum_probs=49.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (201)
T cd03231 1 LEADELTCERDG----------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL 64 (201)
T ss_pred CEEEEEEEEeCC----------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 468899999975 23677888999999999999999999999999999876 5566665544
No 252
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=3.8e-08 Score=91.43 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=88.7
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc--
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP-- 74 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~-- 74 (433)
|++.+++++++|+.. ...+.+.++++.+|..++|+|++||||||+.+.|+..+ |...+++-++..
T Consensus 2 ~~i~~~~l~~~y~~~---------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~ 72 (235)
T COG1122 2 RMIEAENLSFRYPGR---------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK 72 (235)
T ss_pred ceEEEEEEEEEcCCC---------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchh
Confidence 467889999999763 24667788999999999999999999999999999976 666676655431
Q ss_pred cccccccccCCCCCCcCChhHHHH-HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 75 QSNIDKMSAKQPLNDEDRRPWLNN-INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
.........|+.||++..+-+... .++++......+.+. ........+.+...+ +--+++.++..+.....+|
T Consensus 73 ~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~----~e~~~rv~~~l~~vg--l~~~~~r~p~~LSGGqkqR 146 (235)
T COG1122 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR----EEIEERVAEALELVG--LEELLDRPPFNLSGGQKQR 146 (235)
T ss_pred hHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH----HHHHHHHHHHHHHcC--chhhccCCccccCCcceee
Confidence 111123356899999766555443 344444444444210 001111223333332 3344677777777776666
Q ss_pred h
Q psy16778 154 A 154 (433)
Q Consensus 154 ~ 154 (433)
-
T Consensus 147 v 147 (235)
T COG1122 147 V 147 (235)
T ss_pred H
Confidence 4
No 253
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.51 E-value=6.3e-08 Score=91.49 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=45.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 3 KIEIRDLKVSFGQ----------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEEEeeEEEECC----------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6899999999975 23677888999999999999999999999999999864
No 254
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.50 E-value=9.6e-08 Score=89.12 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc--
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-- 76 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-- 76 (433)
+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+....
T Consensus 1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRYGK----------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEeCC----------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh
Confidence 468899999975 23678888999999999999999999999999999865 66667665442211
Q ss_pred cccccccCCCCCCcCChhHHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.......++.++........+..+++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l 96 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENI 96 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHH
Confidence 00112345666654433333444443
No 255
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=1e-07 Score=88.60 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++|++++|+.. ..+.+.++++.+|.+++|+||+||||||+.|.+.+.+ |...+.........
T Consensus 4 ~i~v~nl~v~y~~~----------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~- 72 (254)
T COG1121 4 MIEVENLTVSYGNR----------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR- 72 (254)
T ss_pred EEEEeeeEEEECCE----------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-
Confidence 68999999999851 2566777999999999999999999999999999854 77777766553321
Q ss_pred ccccccCCCCCCc
Q psy16778 78 IDKMSAKQPLNDE 90 (433)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (433)
.....||.+|..
T Consensus 73 -~~~~IgYVPQ~~ 84 (254)
T COG1121 73 -KRLRIGYVPQKS 84 (254)
T ss_pred -cCCeEEEcCccc
Confidence 123567777753
No 256
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.49 E-value=7.6e-08 Score=88.57 Aligned_cols=60 Identities=28% Similarity=0.281 Sum_probs=49.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (213)
T cd03262 1 IEIKNLHKSFGD----------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL 64 (213)
T ss_pred CEEEEEEEEECC----------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 467899999975 23677888999999999999999999999999999865 5566665544
No 257
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.49 E-value=5e-08 Score=97.20 Aligned_cols=146 Identities=15% Similarity=0.213 Sum_probs=89.2
Q ss_pred cccccceeeeccCCcccee--------------eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CC
Q psy16778 3 VSNFGNWRYWGMWPPQYVV--------------TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GV 64 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~ 64 (433)
++++||++.||.++-.+.. +-....+.++++++.+|.+++|+|++||||||+.+.|++.+ |.
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4678888989876544321 11233567899999999999999999999999999999976 77
Q ss_pred eEEeCC----CCCcc--ccc---cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeE
Q psy16778 65 KFIDGD----HLHPQ--SNI---DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVV 135 (433)
Q Consensus 65 ~~id~D----~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~ 135 (433)
.++++. ++... ... .....++.||.....+..+..+++.......+.. .........+.+...+ +
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~----~~~~~~~a~e~le~vg--L 154 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMP----EAERRKRVDEQLELVG--L 154 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcC--C
Confidence 788763 22111 011 1124578888876666566666665443222210 0001112234444432 3
Q ss_pred EEEEEcCHHHHHHHHHHhh
Q psy16778 136 FIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 136 vv~L~~~~e~l~~Rl~~R~ 154 (433)
--+.+..+..+....++|-
T Consensus 155 ~~~~~~~~~~LSgGq~QRV 173 (382)
T TIGR03415 155 AQWADKKPGELSGGMQQRV 173 (382)
T ss_pred chhhcCChhhCCHHHHHHH
Confidence 3455666777777776664
No 258
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.1e-07 Score=90.11 Aligned_cols=51 Identities=27% Similarity=0.347 Sum_probs=45.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 4 AIETVNLRVYYGS----------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eEEEEeEEEEeCC----------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6789999999975 23677888999999999999999999999999999864
No 259
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.49 E-value=1.9e-06 Score=82.41 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-EEeCCCCCcc-------ccccccc----cCCC-----CCCcC--ChhHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQ-------SNIDKMS----AKQP-----LNDED--RRPWL 96 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~-~id~D~~~~~-------~~~~~~~----~~~~-----~~~~~--~~~~~ 96 (433)
+.|.+|+|.|++||||||++..|+.++|.. ++.+|.+.+- .....+. ..+. ..... ...+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 467899999999999999999999999987 6888876510 0000000 0000 00110 11111
Q ss_pred -------HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhC
Q psy16778 97 -------NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAE 155 (433)
Q Consensus 97 -------~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~ 155 (433)
..++.++......|.+.||.+....+.+......... .+.+++. -+.+...+|...|..
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~ 237 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARAR 237 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHh
Confidence 2356667777788999999998888877554322222 3445555 456889999888763
No 260
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.48 E-value=6.4e-08 Score=90.85 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=50.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |..++++.++
T Consensus 1 ~l~~~~l~~~~~~----------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (240)
T PRK09493 1 MIEFKNVSKHFGP----------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65 (240)
T ss_pred CEEEEeEEEEECC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4788999999974 23677888999999999999999999999999999876 5566666554
No 261
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.48 E-value=8.1e-08 Score=90.58 Aligned_cols=51 Identities=24% Similarity=0.188 Sum_probs=45.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
|+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 1 AIEIENLNLFYGE----------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CEEEEEEEEEECC----------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5789999999975 23677888999999999999999999999999999864
No 262
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=8.4e-08 Score=90.14 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=51.4
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|.++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 2 ~~l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 67 (241)
T PRK14250 2 NEIEFKEVSYSSFG----------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI 67 (241)
T ss_pred ceEEEEeEEEEeCC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 47899999999975 23567888999999999999999999999999999865 5566665443
No 263
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.48 E-value=6.8e-07 Score=80.41 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=79.2
Q ss_pred EEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---ccccccc-CCCCCCcCChhHH-----HHHHHHHHHhhhCC
Q psy16778 43 IMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKMSA-KQPLNDEDRRPWL-----NNINRIIHQLNVDN 110 (433)
Q Consensus 43 l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 110 (433)
|-|..||||||+++.|.+.+ |..++-.-.-.... .....-. ..........-.+ ......+...+..|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999998 44322111111000 0011001 1111110000000 12334556667778
Q ss_pred CcEEEEcCc------------ccHHHH-HHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC-CCC---HHhHHHHHhhc
Q psy16778 111 LTGVLVCSA------------LRRNYR-DIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH-FMP---ADLLESQFQTL 170 (433)
Q Consensus 111 ~~~Vi~~~~------------~~~~~~-~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~---~~~l~~~~~~~ 170 (433)
..+|+|-.. ....+. ....... . .+++||++++++..+|+..|+.. ... .+.+....+.+
T Consensus 81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y 160 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAY 160 (186)
T ss_dssp SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHH
T ss_pred CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence 767776211 112222 2222211 2 78999999999999999999761 111 11222222222
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKS 197 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i 197 (433)
.+... ....-++||++.+++++.++|
T Consensus 161 ~~l~~-~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 161 LELAK-DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence 22110 123668899999999999876
No 264
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=8.2e-08 Score=88.18 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=48.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 l~~~~l~~~~~~----------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (210)
T cd03269 1 LEVENVTKRFGR----------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64 (210)
T ss_pred CEEEEEEEEECC----------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCch
Confidence 467899999964 23567778999999999999999999999999999865 5556665443
No 265
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.47 E-value=1.2e-07 Score=89.51 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=50.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKFHG----------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEECC----------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 5899999999975 23677888999999999999999999999999999865 4555554443
No 266
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.1e-07 Score=90.16 Aligned_cols=61 Identities=21% Similarity=0.314 Sum_probs=51.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFGG----------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEECC----------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence 5789999999975 23567778999999999999999999999999999875 6667766554
No 267
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.2e-07 Score=89.26 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=50.8
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~ 72 (433)
|+++++++++.|+. ...+.+.++++..|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~~~~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 1 MIAKTTNLNLFYGK----------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred CceeeeeeEEEECC----------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 78999999999975 23567788999999999999999999999999999853 4445555443
No 268
>PRK10908 cell division protein FtsE; Provisional
Probab=98.45 E-value=9.2e-08 Score=88.66 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=49.7
Q ss_pred ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.| +. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 66 (222)
T PRK10908 1 MIRFEHVSKAYLGG----------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66 (222)
T ss_pred CEEEEeeEEEecCC----------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 47889999999 43 23577888999999999999999999999999999876 5555655444
No 269
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.45 E-value=1.1e-06 Score=78.12 Aligned_cols=62 Identities=24% Similarity=0.181 Sum_probs=49.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~~~~l~~~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 66 (173)
T cd03246 1 LEVENVSFRYPGAE--------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI 66 (173)
T ss_pred CEEEEEEEEcCCCC--------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc
Confidence 46788999997522 23566777999999999999999999999999999976 6566665444
No 270
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.6e-07 Score=82.93 Aligned_cols=62 Identities=24% Similarity=0.232 Sum_probs=53.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
|+++++|++.||. ...+.+.++++.+|.+..|+||+|+||||+..++++.+ |...+++-++.
T Consensus 1 MI~i~nv~K~y~~----------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~ 66 (252)
T COG4604 1 MITIENVSKSYGT----------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66 (252)
T ss_pred CeeehhhhHhhCC----------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecc
Confidence 5789999999998 34777889999999999999999999999999999866 67777777764
No 271
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.44 E-value=1.3e-07 Score=88.92 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=50.0
Q ss_pred ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+ . ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~~----------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (243)
T TIGR02315 1 MLEVENLSKVYPNG----------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66 (243)
T ss_pred CeEEEeeeeecCCC----------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEh
Confidence 478899999997 3 23677888999999999999999999999999999865 5555655443
No 272
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.2e-07 Score=89.57 Aligned_cols=51 Identities=25% Similarity=0.148 Sum_probs=45.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|+. ...+.+.++++++|.+++|+|++||||||+++.|++.+
T Consensus 4 ~l~~~nl~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 4 KVKLEQLNVHFGK----------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEEEEEEEeCC----------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4788999999974 23677888999999999999999999999999999864
No 273
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.44 E-value=1.4e-06 Score=75.14 Aligned_cols=50 Identities=22% Similarity=0.154 Sum_probs=42.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++++.|+.. ..+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus 1 l~~~~l~~~~~~~----------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 1 IELENLSKTYGGK----------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEEEEEECCc----------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678999999752 2456677889999999999999999999999999865
No 274
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.2e-07 Score=89.78 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=50.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 1 ml~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 65 (255)
T PRK11248 1 MLQISHLYADYGG----------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65 (255)
T ss_pred CEEEEEEEEEeCC----------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 4789999999975 23567788999999999999999999999999999865 6566665443
No 275
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.44 E-value=1.3e-07 Score=88.84 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=51.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 2 ~i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSFDG----------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEcCC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 5789999999974 23677888999999999999999999999999999865 6666766544
No 276
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.44 E-value=1.5e-07 Score=86.77 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=49.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+.. -..+.++++++.+|.+++|+|++||||||+++.|++.+ |...++..++
T Consensus 1 ~l~~~~l~~~~~~~---------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 66 (214)
T TIGR02673 1 MIEFHNVSKAYPGG---------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66 (214)
T ss_pred CEEEEeeeEEeCCC---------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 47889999999421 13677888999999999999999999999999999865 5556655444
No 277
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1.2e-07 Score=89.01 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=49.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++|++.|+. . ...+.++++++.+|.+++|+|++||||||+++.|++.+ |..++++.++
T Consensus 1 l~~~~l~~~~~~-~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 65 (241)
T cd03256 1 IEVENLSKTYPN-G--------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDI 65 (241)
T ss_pred CEEeeEEEecCC-c--------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEec
Confidence 467899999964 1 13577888999999999999999999999999999865 5566666544
No 278
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.43 E-value=1.4e-07 Score=100.62 Aligned_cols=64 Identities=28% Similarity=0.200 Sum_probs=55.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++|++++|+... ...+++.+++++.|+.|+|+|.|||||||++|+|.+.+ |...+|+-++.
T Consensus 471 ~I~~~nvsf~y~~~~--------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 471 EIEFENVSFRYGPDD--------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred eEEEEEEEEEeCCCC--------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 367899999999855 24677888999999999999999999999999999977 77778777663
No 279
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.43 E-value=1.1e-07 Score=89.90 Aligned_cols=60 Identities=28% Similarity=0.288 Sum_probs=49.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (252)
T TIGR03005 1 VRFSDVTKRFGI----------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64 (252)
T ss_pred CEEEEEEEEeCC----------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 468899999974 23677888999999999999999999999999999865 5556665443
No 280
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.5e-07 Score=88.86 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=50.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
.+++++|++.|+. ...++++++++++|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 3 KISVKDLDLFYGD----------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred eEEEEEEEEEECC----------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 5789999999975 23677888999999999999999999999999999842 5456665444
No 281
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.43 E-value=1.5e-07 Score=87.45 Aligned_cols=65 Identities=22% Similarity=0.147 Sum_probs=51.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.... ....++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~v~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 69 (228)
T cd03257 1 LLEVKNLSVSFPTGGG------SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69 (228)
T ss_pred CeEEEeeeEeccCCCc------ceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 4678999999975210 013677888999999999999999999999999999865 5556665443
No 282
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.42 E-value=2.1e-07 Score=83.20 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=78.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
|+++.++.++|.. +...+...++.+++++.++..|.++|.+||||||++..+++.+ |..+|++-++.....
T Consensus 1 Mi~~~~~~~~f~~-----g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~ 75 (263)
T COG1101 1 MISLSNATKTFFK-----GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75 (263)
T ss_pred CcccccceeeecC-----CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH
Confidence 4678888999975 3345666888999999999999999999999999999999988 888999888875433
Q ss_pred cc-ccccCCCCCCc--CChhHHHHHHHHHHHhhh
Q psy16778 78 ID-KMSAKQPLNDE--DRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 78 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 108 (433)
+. ......+||++ ...+.++..|+.+.....
T Consensus 76 ~~RA~~larVfQdp~~gt~~~lTieENl~la~~R 109 (263)
T COG1101 76 AKRANLLARVFQDPLAGTAPELTIEENLALAESR 109 (263)
T ss_pred HHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence 32 23345677774 445667777887776554
No 283
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.42 E-value=1.7e-07 Score=87.03 Aligned_cols=60 Identities=22% Similarity=0.156 Sum_probs=49.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..
T Consensus 7 ~i~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 70 (225)
T PRK10247 7 LLQLQNVGYLAGD----------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED 70 (225)
T ss_pred eEEEeccEEeeCC----------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 5789999999975 23677888999999999999999999999999999865 555555543
No 284
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=2e-07 Score=88.20 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=50.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 4 LLSAQDVNIYYGD----------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEEEeeeEEEECC----------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEc
Confidence 5788999999975 23678888999999999999999999999999999864 5556665444
No 285
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=1.4e-07 Score=90.25 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=51.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ml~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 1 MLATSDLWFRYQD----------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred CeEEEEEEEEcCC----------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 4789999999975 23677888999999999999999999999999999865 6666766554
No 286
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.7e-07 Score=89.04 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=45.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus 12 ~l~i~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 12 VYQINGMNLWYGQ----------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eEEEeeEEEEECC----------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999975 34677788999999999999999999999999999864
No 287
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.42 E-value=2e-07 Score=85.84 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=47.7
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 1 ~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 62 (213)
T cd03235 1 EVEDLTVSYGG----------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP 62 (213)
T ss_pred CcccceeEECC----------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc
Confidence 46889999975 23677888999999999999999999999999999865 555565543
No 288
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.41 E-value=1e-07 Score=90.33 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=48.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG 69 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~ 69 (433)
.++++||++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...++.
T Consensus 12 ~l~i~~l~~~~~~----------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g 73 (257)
T PRK11247 12 PLLLNAVSKRYGE----------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73 (257)
T ss_pred cEEEEEEEEEECC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 4788999999975 23567788999999999999999999999999999865 4445544
No 289
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.41 E-value=1.5e-07 Score=89.59 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=45.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 4 IIRVEKLAKTFNQ----------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEeeEEEEeCC----------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 6889999999975 23677888999999999999999999999999999876
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.5e-07 Score=84.46 Aligned_cols=54 Identities=26% Similarity=0.178 Sum_probs=44.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++||+|.|+.-+ .+...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 4 ~~~~~~~~~~~~~~------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 4 LSWRNISFTTGKGR------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEccEEEeccCC------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 67899999996411 1123677888999999999999999999999999999964
No 291
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.41 E-value=2.1e-07 Score=87.50 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=49.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~ 72 (433)
+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 66 (243)
T TIGR01978 1 LKIKDLHVSVED----------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66 (243)
T ss_pred CeEeeEEEEECC----------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEec
Confidence 468899999974 23677888999999999999999999999999999862 5556665544
No 292
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.40 E-value=2e-07 Score=88.63 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 13 KIQVRNLNFYYGK----------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eEEEEEEEEEeCC----------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4688999999975 23677888999999999999999999999999999864
No 293
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=1.8e-07 Score=87.99 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=49.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++|++.|+... ..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~~~---------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (242)
T cd03295 1 IEFENVTKRYGGGK---------KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI 65 (242)
T ss_pred CEEEEEEEEeCCcc---------eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc
Confidence 46789999997411 2566777999999999999999999999999999866 6666766554
No 294
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.40 E-value=1.9e-07 Score=86.87 Aligned_cols=50 Identities=22% Similarity=0.156 Sum_probs=43.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 1 i~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 1 IELRDLNVYYGD----------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEEEEEcCC----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999975 23677788999999999999999999999999999975
No 295
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=2.3e-07 Score=87.73 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=50.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 4 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 4 KMESKNLNLWYGE----------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 (251)
T ss_pred EEEEEEeEEEECC----------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence 6788999999975 23677888999999999999999999999999999853 5566666554
No 296
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.8e-07 Score=87.29 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=48.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.. ..++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~~------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 63 (232)
T PRK10771 1 MLKLTDITWLYHHL------------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH 63 (232)
T ss_pred CeEEEEEEEEECCc------------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec
Confidence 47889999999741 12567889999999999999999999999999875 6667766554
No 297
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.39 E-value=9.9e-07 Score=78.83 Aligned_cols=61 Identities=26% Similarity=0.152 Sum_probs=47.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+++++++++|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..
T Consensus 1 i~~~~~~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~ 65 (178)
T cd03247 1 LSINNVSFSYPEQE--------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP 65 (178)
T ss_pred CEEEEEEEEeCCCC--------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE
Confidence 46789999996521 12466777899999999999999999999999999975 555565543
No 298
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=1.7e-07 Score=87.80 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=50.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYGK----------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeCC----------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence 5788999999974 23677788999999999999999999999999999865 5556665544
No 299
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.6e-07 Score=89.54 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 7 ~l~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYGK----------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEECC----------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh
Confidence 5789999999975 23678888999999999999999999999999999976 5556655443
No 300
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.1e-07 Score=87.93 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=49.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.++|++.+ |..++++.++
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~ 72 (250)
T PRK14262 3 IIEIENFSAYYGE----------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI 72 (250)
T ss_pred eEEEEeeEEEeCC----------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence 5789999999974 23567788999999999999999999999999999743 4455655443
No 301
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.38 E-value=2.1e-07 Score=88.42 Aligned_cols=61 Identities=28% Similarity=0.248 Sum_probs=51.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 2 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRLGG----------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEeCC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 5789999999975 23677888999999999999999999999999999965 6666665543
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=2.1e-06 Score=76.14 Aligned_cols=62 Identities=29% Similarity=0.220 Sum_probs=49.3
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++..+
T Consensus 1 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~ 66 (171)
T cd03228 1 IEFKNVSFSYPGRP--------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66 (171)
T ss_pred CEEEEEEEEcCCCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence 46789999997521 12567778999999999999999999999999999976 5566665443
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=1.7e-06 Score=77.19 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=38.6
Q ss_pred ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+|++.||. ...+.+ .+++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~~l~~~~~~----------~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 4 PDCVKRYGV----------FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCeEEEECC----------EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 578999986 334445 3788999999999999999999999999865
No 304
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.38 E-value=1.7e-07 Score=92.01 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=61.0
Q ss_pred ccccccceeeeccCC-ccc--eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc
Q psy16778 2 AVSNFGNWRYWGMWP-PQY--VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP 74 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~ 74 (433)
+++++||++.|+... ..+ ...-....+.++++++.+|.+++|+|++||||||+++.|++.+ |..++++.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 578999999996310 000 0000134678899999999999999999999999999999966 666777766532
Q ss_pred cc--cc--cccccCCCCCCc
Q psy16778 75 QS--NI--DKMSAKQPLNDE 90 (433)
Q Consensus 75 ~~--~~--~~~~~~~~~~~~ 90 (433)
.. .. .....++.+|++
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~ 107 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDP 107 (331)
T ss_pred CCHHHHHHHhCceEEEecCc
Confidence 11 00 112456777775
No 305
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.4e-07 Score=87.68 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=44.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++++++.|+. ...++++++++.+|.+++|+|++||||||+++.|++.
T Consensus 6 ~i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 6 ILSTKNLNLWYGE----------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eEEEeeeEEEECC----------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999975 2367788899999999999999999999999999974
No 306
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=2.2e-07 Score=88.65 Aligned_cols=61 Identities=23% Similarity=0.089 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |..++++.++
T Consensus 11 ~l~i~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVPG----------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEECC----------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh
Confidence 4789999999975 23577888999999999999999999999999999865 5566665443
No 307
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.37 E-value=6.7e-06 Score=73.57 Aligned_cols=36 Identities=39% Similarity=0.475 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ 75 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~ 75 (433)
+|+|.|.+||||||+++.|++.+ ++.+++.|+++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 48999999999999999999986 4578999999854
No 308
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.9e-07 Score=89.81 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=52.4
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|.+++++|++.|+.... .....+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 1 ~~l~~~~l~~~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 71 (280)
T PRK13649 1 MGINLQNVSYTYQAGTP-----FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI 71 (280)
T ss_pred CeEEEEEEEEEcCCCCc-----cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 77999999999964110 0012567788999999999999999999999999999865 6666766544
No 309
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.37 E-value=2.2e-07 Score=85.80 Aligned_cols=64 Identities=23% Similarity=0.146 Sum_probs=49.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++|++.|+... .....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~~~------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 68 (218)
T cd03255 1 IELKNLSKTYGGGG------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI 68 (218)
T ss_pred CeEeeeEEEecCCC------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEeh
Confidence 46889999997421 0012567788999999999999999999999999999876 5556665444
No 310
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.36 E-value=3e-07 Score=86.96 Aligned_cols=59 Identities=32% Similarity=0.240 Sum_probs=49.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD 70 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D 70 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~ 65 (253)
T TIGR02323 3 LLQVSGLSKSYGG----------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65 (253)
T ss_pred eEEEeeeEEEeCC----------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence 5789999999975 23577888999999999999999999999999999976 55566553
No 311
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=3.4e-07 Score=86.40 Aligned_cols=51 Identities=22% Similarity=0.112 Sum_probs=45.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 3 KFNIENLDLFYGE----------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred eEEEeccEEEECC----------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999975 34678888999999999999999999999999999864
No 312
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.36 E-value=5.6e-06 Score=70.31 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=95.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCcccccccccc--CCCCCC---cCChhHH-----------
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSA--KQPLND---EDRRPWL----------- 96 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~--~~~~~~---~~~~~~~----------- 96 (433)
.+++.+|+|-|.+.||||+++..+-.... +.++-.|.+.+...-..... |+.... ++..+++
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 57889999999999999999999988663 44555554432111111122 222211 1222221
Q ss_pred -HHHHHHHHHhhhCCCcEEEEcCcccHHHH-HHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778 97 -NNINRIIHQLNVDNLTGVLVCSALRRNYR-DIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE 172 (433)
Q Consensus 97 -~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~-~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~ 172 (433)
......+.....+|.+++.|.-.-.+.+. +-++-... +..|-+.+|.|++.+|...|.++... ...-..+.-+.
T Consensus 100 ~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG--~~rg~~r~vHa 177 (205)
T COG3896 100 MHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPG--WNRGSARAVHA 177 (205)
T ss_pred HHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcc--hhhhhHHHhcC
Confidence 11122334445677777777665444442 22222212 67888999999999998777643221 12223333343
Q ss_pred CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778 173 PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 173 ~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
... -++.+|++ .++.|+...|.++++
T Consensus 178 ~~~----YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 178 DAE----YDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred Ccc----eeeeecccCCCHHHHHHHHHHHhc
Confidence 332 57999999 999999999987653
No 313
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.36 E-value=2.2e-07 Score=85.54 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=58.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
+++++|++.|+. .+.+.++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++.....
T Consensus 1 ~~~~~l~~~~~~------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~- 67 (213)
T TIGR01277 1 LALDKVRYEYEH------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP- 67 (213)
T ss_pred CeEEeeeEEeCC------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh-
Confidence 468899999963 123567889999999999999999999999999976 666776655432111
Q ss_pred cccccCCCCCCcCChhHHHHHHHH
Q psy16778 79 DKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.....++.+++.......+..+++
T Consensus 68 ~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 68 YQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred hccceEEEeccCccCCCCcHHHHH
Confidence 112345666664433333444444
No 314
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.36 E-value=2.3e-07 Score=88.65 Aligned_cols=61 Identities=25% Similarity=0.229 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 7 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRGN----------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence 5789999999975 23567788999999999999999999999999999875 5556665443
No 315
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=2.5e-07 Score=82.72 Aligned_cols=60 Identities=28% Similarity=0.317 Sum_probs=48.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~~~~l~~~~~~----------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (178)
T cd03229 1 LELKNVSKRYGQ----------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL 64 (178)
T ss_pred CEEEEEEEEECC----------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence 467899999975 23567778999999999999999999999999999865 5555655433
No 316
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.36 E-value=1.7e-07 Score=92.86 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=76.9
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc-----cccccCCCCCCcCChhHHH
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI-----DKMSAKQPLNDEDRRPWLN 97 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 97 (433)
.+.++++++.+|++++|+|++||||||+.++|++.+ |..++++.++...... .....++.+|.....+..+
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 567788999999999999999999999999999976 7778888766532111 0234678888766666556
Q ss_pred HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 98 NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
..+++.......+.. .........+.+...+ +--+++..+..+....++|-
T Consensus 88 V~eNi~~~~~~~~~~----~~~~~~~~~~~l~~vg--L~~~~~~~p~~LSGGq~QRV 138 (363)
T TIGR01186 88 ILQNTSLGPELLGWP----EQERKEKALELLKLVG--LEEYEHRYPDELSGGMQQRV 138 (363)
T ss_pred HHHHHHHHHHHcCCC----HHHHHHHHHHHHHhcC--CchhhhCChhhCCHHHHHHH
Confidence 666655433222210 0000122233444332 34456667777777776664
No 317
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.35 E-value=2.4e-07 Score=85.18 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=53.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~ 78 (433)
++++++++.|+.. ..+.++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++.....
T Consensus 1 i~~~~l~~~~~~~------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~- 67 (211)
T cd03298 1 VRLDKIRFSYGEQ------------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP- 67 (211)
T ss_pred CEEEeEEEEeCCE------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-
Confidence 4678999999741 12677889999999999999999999999999876 666776655432111
Q ss_pred cccccCCCCCCcC
Q psy16778 79 DKMSAKQPLNDED 91 (433)
Q Consensus 79 ~~~~~~~~~~~~~ 91 (433)
.....++.+++..
T Consensus 68 ~~~~i~~~~q~~~ 80 (211)
T cd03298 68 ADRPVSMLFQENN 80 (211)
T ss_pred hHccEEEEecccc
Confidence 1123456666543
No 318
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.35 E-value=3.3e-07 Score=84.16 Aligned_cols=61 Identities=25% Similarity=0.140 Sum_probs=48.5
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++.|+... ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 1 ~~~~l~~~~~~~~--------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (211)
T cd03225 1 ELKNLSFSYPDGA--------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL 65 (211)
T ss_pred CceeEEEecCCCC--------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence 4678999997421 23577888999999999999999999999999999865 5566665443
No 319
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.4e-07 Score=89.31 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=53.2
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|.+++++|++.|+...+ .+-..++++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 1 ~~l~~~~l~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i 71 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTP-----YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI 71 (286)
T ss_pred CEEEEEEEEEEECCCCc-----cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 77999999999963110 0013677888999999999999999999999999999865 6667766554
No 320
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.7e-07 Score=91.59 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=58.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
|+++ +|++.|+... .++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++...
T Consensus 1 ~l~~-~l~k~~~~~~------------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~ 67 (352)
T PRK11144 1 MLEL-NFKQQLGDLC------------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK 67 (352)
T ss_pred CeEE-EEEEEeCCEE------------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc
Confidence 4677 9999997511 1566889999999999999999999999999965 6566666544210
Q ss_pred ---ccccccccCCCCCCcCChhHHHHHHHH
Q psy16778 76 ---SNIDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
........++.+|+....+.++..+++
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 68 GICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred ccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 000122346677765444434444443
No 321
>KOG0058|consensus
Probab=98.35 E-value=3.4e-07 Score=95.15 Aligned_cols=64 Identities=27% Similarity=0.231 Sum_probs=55.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||+|.|...+ +...+++++++++.|++++|+||||+||||++.+|-+-| |...+|+-++.
T Consensus 466 IeF~~VsFaYP~Rp-------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRP-------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCC-------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence 67899999997633 234788999999999999999999999999999999877 88888888875
No 322
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.35 E-value=2.7e-07 Score=87.57 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=50.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYGE----------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 5789999999975 23677788999999999999999999999999999976 5556655443
No 323
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.9e-07 Score=90.57 Aligned_cols=84 Identities=14% Similarity=-0.018 Sum_probs=58.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--------CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL--------GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l--------g~~~id~D~~~ 73 (433)
+++++||++.|+... -....+.++++++.+|.+++|+|+|||||||+++.|++.+ |...+++.++.
T Consensus 3 ~L~v~~l~~~y~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 3 LLDIRNLTIEFKTSD------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred eEEEeeeEEEEeCCC------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 689999999995311 0134778899999999999999999999999999999975 44555554442
Q ss_pred ccc--cc---cccccCCCCCCcC
Q psy16778 74 PQS--NI---DKMSAKQPLNDED 91 (433)
Q Consensus 74 ~~~--~~---~~~~~~~~~~~~~ 91 (433)
... .. .....++.+|++.
T Consensus 77 ~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 77 RLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred cCCHHHHHHHhCCCEEEEecCcc
Confidence 211 00 1123567777753
No 324
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.34 E-value=3.2e-07 Score=83.20 Aligned_cols=66 Identities=32% Similarity=0.288 Sum_probs=49.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~ 72 (433)
+++++|++.|+.+. ...+...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 4 l~~~~ls~~~~~~~----~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 4 LSFRNLTVTVKSSP----SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75 (194)
T ss_pred EEEEeeEEEEecCC----CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence 67899999997420 000023677888999999999999999999999999999865 4445555443
No 325
>PLN02772 guanylate kinase
Probab=98.34 E-value=8.7e-06 Score=80.34 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=82.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWL 96 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 96 (433)
...+.|+|+||+|||||||.+.|.+.+. +.+.-....+.......-...+-|.....+ .++
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y 212 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY 212 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence 3567999999999999999999988652 222222222211110000011222221000 011
Q ss_pred HHHHHHHHHhhhCCCcEEEEcCcc-cHHHHHHHHhcCCeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc-CC
Q psy16778 97 NNINRIIHQLNVDNLTGVLVCSAL-RRNYRDIIRNNNRVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQTLE-EP 173 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~-~~ 173 (433)
-.-.+.+.....+|+.+|++.... ....++.. ...++|++ ..+.+++.+|+..|+.. ..+.+..+++..+ +.
T Consensus 213 GTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~---l~~v~IFI~PPSlEeLe~RL~~RGte--seE~I~kRL~~A~~Ei 287 (398)
T PLN02772 213 GTSIEAVEVVTDSGKRCILDIDVQGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTE--TEEQIQKRLRNAEAEL 287 (398)
T ss_pred cccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc---CCeEEEEEeCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Confidence 112334556667788888886542 22222222 11244444 55689999999998642 2333333332221 11
Q ss_pred CC--CCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 174 DP--LVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 174 ~~--~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
.. +....+++|.++ ++++..+++...+.
T Consensus 288 ~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 288 EQGKSSGIFDHILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred hhccccCCCCEEEECC-CHHHHHHHHHHHHh
Confidence 00 011245667676 78888777776653
No 326
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3.9e-07 Score=86.23 Aligned_cols=51 Identities=25% Similarity=0.214 Sum_probs=44.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 6 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 6 KMEARGLSFFYGD----------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEEEeeeEEEECC----------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999975 23677888999999999999999999999999999753
No 327
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=3.5e-07 Score=78.80 Aligned_cols=58 Identities=26% Similarity=0.167 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+.+.+++|+|..|. |++..++ .+.+.+++.+.|+.++|-|+|||||||+.|.|...|
T Consensus 4 ~l~v~~~~KtFtlH~-q~Gi~Lp--V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 4 PLNVSNVSKTFTLHQ-QGGVRLP--VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eeeeecchhheEeee-cCCEEee--eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 467889999998765 5666666 888999999999999999999999999999998876
No 328
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.33 E-value=3.6e-07 Score=87.24 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=51.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+... ..+..-....++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 4 ~l~~~~l~~~~~~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRT-GWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCC-CcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 578999999996310 000000123677888999999999999999999999999999976 5566665444
No 329
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.33 E-value=3.3e-07 Score=84.52 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=50.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++.++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 11 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRNE----------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecCC----------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence 4788999999975 23677888999999999999999999999999999865 5566665444
No 330
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=3e-07 Score=89.36 Aligned_cols=64 Identities=23% Similarity=0.149 Sum_probs=50.9
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG 69 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~ 69 (433)
|.+++++|++.|+.... .....++++++++.+|.+++|+|++||||||+++.|++.+ |...++.
T Consensus 1 m~i~~~~l~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (305)
T PRK13651 1 MQIKVKNIVKIFNKKLP-----TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF 68 (305)
T ss_pred CEEEEEEEEEEECCCCC-----ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence 56899999999964210 0113677888999999999999999999999999999865 6666654
No 331
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=3.8e-07 Score=85.15 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=50.3
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+.++++++.|+. ...+++.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 64 (232)
T cd03300 1 IELENVSKFYGG----------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64 (232)
T ss_pred CEEEeEEEEeCC----------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 467899999975 23678888999999999999999999999999999976 6666766554
No 332
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.3e-07 Score=87.03 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=45.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~i~~v~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 4 RIDVKDLNIYYGS----------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEeeEEEEECC----------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 6889999999975 34677888999999999999999999999999999853
No 333
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.33 E-value=3.6e-07 Score=86.16 Aligned_cols=50 Identities=32% Similarity=0.244 Sum_probs=44.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
++++++|++.|+. ...+++.++++.+|.+++|+|++||||||+.+.|++.
T Consensus 1 ~i~~~nl~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 1 MLSIKDLHVSVED----------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CeEEEEEEEEeCC----------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999975 2367788899999999999999999999999999986
No 334
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.33 E-value=3.6e-07 Score=85.02 Aligned_cols=65 Identities=23% Similarity=0.108 Sum_probs=51.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.... ....+.++++++.+|.+++|+|++||||||+++.|++.+ |..++++..+
T Consensus 6 ~l~~~~l~~~~~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGEH------ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCCc------ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc
Confidence 5789999999974210 012577888999999999999999999999999999976 6666666544
No 335
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.8e-07 Score=86.21 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=49.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH---------hCCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR---------LGVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~---------lg~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++. -|...+++.++
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 5 ILQVSDLSVYYNK----------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74 (252)
T ss_pred eEEEEeeEEEECC----------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence 5789999999975 2367788899999999999999999999999999874 25555655444
No 336
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=2.8e-07 Score=88.92 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=60.7
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|++++++|++.|+.... ..-..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 1 ~~l~~~~l~~~y~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 75 (287)
T PRK13637 1 MSIKIENLTHIYMEGTP-----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK 75 (287)
T ss_pred CEEEEEEEEEECCCCCc-----cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC
Confidence 57899999999964210 0013677888999999999999999999999999999866 66777776553211
Q ss_pred ---cccccccCCCCCCc
Q psy16778 77 ---NIDKMSAKQPLNDE 90 (433)
Q Consensus 77 ---~~~~~~~~~~~~~~ 90 (433)
.......++.+|++
T Consensus 76 ~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYP 92 (287)
T ss_pred ccHHHHhhceEEEecCc
Confidence 01122446777764
No 337
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.32 E-value=2.4e-07 Score=96.51 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=52.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++
T Consensus 4 ~i~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFPG----------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeCC----------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 5889999999975 23677888999999999999999999999999999976 6667766554
No 338
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.32 E-value=9.1e-07 Score=80.25 Aligned_cols=34 Identities=35% Similarity=0.454 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---------CeEEeCCCCC
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLG---------VKFIDGDHLH 73 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg---------~~~id~D~~~ 73 (433)
+|+|+|++||||||+++.|+..++ ..++..|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 689999999999999999999995 3466677665
No 339
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.7e-07 Score=86.59 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=45.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.||. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 10 ~i~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 10 VFNISRLYLYIND----------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred heeeeeEEEecCC----------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999986 34678888999999999999999999999999999865
No 340
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.9e-07 Score=86.09 Aligned_cols=51 Identities=22% Similarity=0.142 Sum_probs=45.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 4 ~l~~~~l~~~~~~----------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 4 IISAKDVHLSYGN----------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eEEEEeeEEEECC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 6789999999975 23677888999999999999999999999999999864
No 341
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.1e-07 Score=86.03 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 10 ~l~i~~v~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 10 VLRTENLNVYYGS----------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EEEEeeeEEEECC----------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 5789999999975 23577888999999999999999999999999999753
No 342
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.31 E-value=3.7e-07 Score=82.86 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=48.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... .++ +++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 1 ~l~~~~l~~~~~~~~----------l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 1 MLSLHQLQFNIEQKN----------LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred CeEEEEeeEEECCcE----------EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence 478899999996421 233 66889999999999999999999999999975 6667766544
No 343
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.8e-07 Score=89.89 Aligned_cols=63 Identities=22% Similarity=0.117 Sum_probs=52.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++||+|+|..+. -+.+++.+++.++|+.|+|+|.+||||||+...+.+.+ |-..+++-++
T Consensus 336 ~l~~~~vsF~y~~~~--------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQ--------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCc--------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence 468899999997755 34778888999999999999999999999999999866 5556655554
No 344
>KOG3877|consensus
Probab=98.31 E-value=9.2e-06 Score=75.10 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=92.6
Q ss_pred CCCCCCC-CeEEEEEcCCCCCHHHHHHHHHHHhCCeE---EeCCCCCcccccc---ccccCCC-----------CCCcCC
Q psy16778 31 PSGEGSP-STVFVIMGVSGSGKSTIGESLATRLGVKF---IDGDHLHPQSNID---KMSAKQP-----------LNDEDR 92 (433)
Q Consensus 31 ~~~~~~~-~~~I~l~G~~GsGKSTla~~La~~lg~~~---id~D~~~~~~~~~---~~~~~~~-----------~~~~~~ 92 (433)
.+..+.+ .++|++-|..|||||++|+.||+.||+.+ ++.|.+....... .+...++ +.++..
T Consensus 63 tskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~ 142 (393)
T KOG3877|consen 63 TSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSG 142 (393)
T ss_pred hhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCc
Confidence 4444444 46899999999999999999999998866 4566654221111 1111111 111211
Q ss_pred hhH-----------HHHHHHHHHHhhhCCCcEEEEcCccc---------------HHHHH---HHHh-----cCC-eEEE
Q psy16778 93 RPW-----------LNNINRIIHQLNVDNLTGVLVCSALR---------------RNYRD---IIRN-----NNR-VVFI 137 (433)
Q Consensus 93 ~~~-----------~~~~~~~~~~~~~~~~~~Vi~~~~~~---------------~~~~~---~l~~-----~~~-~~vv 137 (433)
... +....+.+...+.-|.++|+.-+..+ .+++. .+++ .-. -+||
T Consensus 143 dlsa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLVi 222 (393)
T KOG3877|consen 143 DLSAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVI 222 (393)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEE
Confidence 111 12334456667788889999865521 11111 1111 111 4899
Q ss_pred EEEcCHHHHHHHHHHhhCCCCC-------HHhHHHHHhhc-cCCCCCCCCCeEEEccC--CCHHHHHHHHhcC
Q psy16778 138 YLKAEFGVILSRLQKRAEHFMP-------ADLLESQFQTL-EEPDPLVEPDVRTVSVN--EPLEGIVSKSAIM 200 (433)
Q Consensus 138 ~L~~~~e~l~~Rl~~R~~~~~~-------~~~l~~~~~~~-~~~~~~~~~~~~~Id~~--~~~ee~~~~i~~~ 200 (433)
||+.|...+.+++++|+....- ...++..++.. -+-+. ..+..+..+.+ ++.+.+++.|...
T Consensus 223 Yld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s-~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 223 YLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYS-NHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred EEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHh-hhhheeeeecccCCCchhHHHhhhhh
Confidence 9999999999999999754322 11222222211 00010 11234555555 7777777777543
No 345
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.31 E-value=4e-07 Score=84.47 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=48.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...++...+
T Consensus 1 l~l~~v~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~ 64 (223)
T TIGR03740 1 LETKNLSKRFGK----------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW 64 (223)
T ss_pred CEEEeEEEEECC----------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 468899999975 23566777999999999999999999999999999976 6566665443
No 346
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.31 E-value=4.3e-07 Score=83.09 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=47.6
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++++++.|+.. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~~~~l~~~~~~~---------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 64 (205)
T cd03226 1 RIENISFSYKKG---------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64 (205)
T ss_pred CcccEEEEeCCc---------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence 367899999641 12567778999999999999999999999999999965 5556665443
No 347
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=3.1e-07 Score=88.61 Aligned_cols=67 Identities=24% Similarity=0.221 Sum_probs=53.2
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|++++++|++.|+.... .+...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~~i~~~~l~~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 71 (287)
T PRK13641 1 MSIKFENVDYIYSPGTP-----MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71 (287)
T ss_pred CEEEEEEEEEEcCCCCC-----ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 67899999999974210 0013677888999999999999999999999999999865 6667766554
No 348
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=4.3e-07 Score=86.75 Aligned_cols=61 Identities=23% Similarity=0.216 Sum_probs=49.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 21 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 21 ILEVKDLSIYYGE----------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred eEEEEEEEEEeCC----------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 4788999999975 23677888999999999999999999999999999842 5555655444
No 349
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.31 E-value=3.6e-07 Score=87.37 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=45.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 1 ml~~~nl~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 1 MLTADHLHVARRH----------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred CeEEEEEEEEECC----------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999975 23677888999999999999999999999999999864
No 350
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=3.4e-07 Score=87.74 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=58.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
+++++++++.|+.. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 4 ~l~~~~l~~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYKDG---------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeCCC---------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence 58899999999521 13677888999999999999999999999999999865 66677765543210
Q ss_pred cccccccCCCCCCc
Q psy16778 77 NIDKMSAKQPLNDE 90 (433)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (433)
.......++.++++
T Consensus 75 ~~~~~~i~~v~q~~ 88 (274)
T PRK13647 75 KWVRSKVGLVFQDP 88 (274)
T ss_pred HHHHhhEEEEecCh
Confidence 01112346667664
No 351
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.30 E-value=3.5e-07 Score=85.72 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. -..+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~i~~l~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~ 64 (237)
T TIGR00968 1 IEIANISKRFGS----------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA 64 (237)
T ss_pred CEEEEEEEEECC----------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 467899999974 23677888999999999999999999999999999865 6566666554
No 352
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.5e-07 Score=86.77 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=44.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 24 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 24 VFDTQNLNLWYGE----------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEeeeEEEECC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999975 23567788999999999999999999999999999864
No 353
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.30 E-value=5.4e-07 Score=82.43 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=47.0
Q ss_pred cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+++|++.|+. -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 1 i~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 61 (206)
T TIGR03608 1 LKNISKKFGD----------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE 61 (206)
T ss_pred CcceEEEECC----------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence 4688999975 23677888999999999999999999999999999866 555666554
No 354
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.30 E-value=4.3e-07 Score=86.18 Aligned_cols=60 Identities=30% Similarity=0.299 Sum_probs=49.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+++++++++.|+. -..+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.+
T Consensus 6 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (258)
T PRK11701 6 LLSVRGLTKLYGP----------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69 (258)
T ss_pred eEEEeeeEEEcCC----------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence 5788999999974 12566778999999999999999999999999999975 556666654
No 355
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.3e-07 Score=86.65 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 20 ~l~~~nl~~~~~~----------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 20 ALSTKDLHVYYGK----------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEeeEEEEECC----------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5789999999965 23567788999999999999999999999999999864
No 356
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.30 E-value=4.1e-07 Score=88.43 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=53.3
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHH
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (433)
..++++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++...........++.+++......++..++
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 3677888999999999999999999999999999976 666777655432111112235677776544444444444
Q ss_pred H
Q psy16778 102 I 102 (433)
Q Consensus 102 ~ 102 (433)
+
T Consensus 87 l 87 (302)
T TIGR01188 87 L 87 (302)
T ss_pred H
Confidence 3
No 357
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.6e-07 Score=85.60 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=44.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.
T Consensus 3 ~l~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 3 KIDARDVNFWYGD----------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEEEEEEEEEECC----------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 6789999999975 2367778899999999999999999999999999874
No 358
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.8e-07 Score=85.53 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=45.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~~~~l~~~~~~----------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 4 KIKIRGVNFFYHK----------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred eEEEEEEEEEECC----------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 6789999999975 23577788999999999999999999999999999965
No 359
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.30 E-value=4.8e-07 Score=86.37 Aligned_cols=70 Identities=20% Similarity=0.077 Sum_probs=51.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.+... +...+-..+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++..+
T Consensus 3 ~l~~~nl~~~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLS-GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCccc-cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence 58899999999731000 0000123678888999999999999999999999999999865 5555555443
No 360
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=3.4e-07 Score=84.75 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=48.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... .....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~~~------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 68 (220)
T cd03293 1 LEVRNVSKTYGGGG------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV 68 (220)
T ss_pred CeEEEEEEEcCCCC------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 46789999996411 0012567888999999999999999999999999999865 5555555433
No 361
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=4.3e-07 Score=86.77 Aligned_cols=63 Identities=21% Similarity=0.065 Sum_probs=50.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 7 ~l~i~~l~~~~~~~~--------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQSDA--------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCCCC--------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 578999999997521 12566777999999999999999999999999999865 5566665443
No 362
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.30 E-value=4.6e-07 Score=86.40 Aligned_cols=70 Identities=17% Similarity=0.029 Sum_probs=51.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+...... ..-+-..++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCcccc-ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 478999999996311000 000123678899999999999999999999999999999976 5566665444
No 363
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.29 E-value=3.2e-07 Score=95.82 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFGP----------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcCC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEEC
Confidence 5789999999975 23677888999999999999999999999999999865 5666766554
No 364
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.29 E-value=3.3e-07 Score=96.15 Aligned_cols=62 Identities=27% Similarity=0.173 Sum_probs=51.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+... ..+++.++++++|+.++|+|++||||||+++.|.+.+ |...+++-++.
T Consensus 335 I~~~~vsf~Y~~~~---------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 335 LELRDLSFGYPGSP---------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred EEEEEEEEecCCCC---------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 67889999996421 2688899999999999999999999999999999876 66777765543
No 365
>PRK15453 phosphoribulokinase; Provisional
Probab=98.29 E-value=1.7e-05 Score=75.03 Aligned_cols=39 Identities=21% Similarity=0.525 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP 74 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~ 74 (433)
.++.+|+|+|.|||||||+++.|++.++ ..+++.|.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678999999999999999999998773 56899999875
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.29 E-value=5.1e-07 Score=80.85 Aligned_cols=58 Identities=28% Similarity=0.230 Sum_probs=46.3
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |..+++..+
T Consensus 1 ~~~~l~~~~~~----------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~ 62 (180)
T cd03214 1 EVENLSVGYGG----------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD 62 (180)
T ss_pred CeeEEEEEECC----------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 46788999964 23567788999999999999999999999999999865 445555433
No 367
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=4.4e-07 Score=89.03 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=60.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++||++.|+...-.....-....+.++++++.+|.+++|+|+|||||||+++.|++.+ |...+++.++.....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 5789999999963110000000134788899999999999999999999999999999976 666777665532110
Q ss_pred ----ccccccCCCCCCc
Q psy16778 78 ----IDKMSAKQPLNDE 90 (433)
Q Consensus 78 ----~~~~~~~~~~~~~ 90 (433)
......++.+|++
T Consensus 85 ~~~~~~r~~i~~v~Q~~ 101 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNP 101 (327)
T ss_pred HHHHHHhCCEEEEEcCc
Confidence 0112356777764
No 368
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=9.8e-07 Score=79.89 Aligned_cols=54 Identities=26% Similarity=0.139 Sum_probs=43.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.++++++++.|+... .....++++++++.+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~l~~~~l~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 3 VLTWKNLNYTVPVKG------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEeeeEEEecCCC------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999996310 001257788899999999999999999999999999974
No 369
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.28 E-value=5.9e-07 Score=81.91 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=49.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~ 72 (433)
+.++++++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~ 66 (200)
T cd03217 1 LEIKDLHVSVGG----------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI 66 (200)
T ss_pred CeEEEEEEEeCC----------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC
Confidence 467899999974 23678888999999999999999999999999999862 5556666554
No 370
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.28 E-value=6.3e-07 Score=91.42 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=69.8
Q ss_pred ccccccceeeeccCC-ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc-c
Q psy16778 2 AVSNFGNWRYWGMWP-PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP-Q 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~-~ 75 (433)
.++++||+++|+... +.....-...+++++|++..+|++++|+|.|||||||++|.|++.. |...+++.++.- .
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 478999999997422 0001122456888999999999999999999999999999999966 777777766211 1
Q ss_pred ccc--cccccCCCCCCc--CChhHHHHHHHHHHHhh
Q psy16778 76 SNI--DKMSAKQPLNDE--DRRPWLNNINRIIHQLN 107 (433)
Q Consensus 76 ~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 107 (433)
... .....-+.||++ ...+..+..+.+.+.+.
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 111 112335667764 33444444444444444
No 371
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.28 E-value=4.1e-07 Score=83.72 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=48.3
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~~~---------~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 65 (214)
T cd03292 1 IEFINVTKTYPNGT---------AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV 65 (214)
T ss_pred CEEEEEEEEeCCCc---------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 46789999996311 2566778999999999999999999999999999975 5555655443
No 372
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=5.4e-07 Score=85.18 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.
T Consensus 5 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 5 IITSSDVHLFYGK----------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred eEEEEeEEEEECC----------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999975 2367888899999999999999999999999999984
No 373
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=5e-07 Score=86.81 Aligned_cols=63 Identities=22% Similarity=0.080 Sum_probs=51.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPDAA--------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCCCC--------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 489999999996411 12567777999999999999999999999999999876 6667776655
No 374
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.28 E-value=5.6e-07 Score=84.26 Aligned_cols=62 Identities=26% Similarity=0.179 Sum_probs=49.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 i~~~~l~~~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (237)
T cd03252 1 ITFEHVRFRYKPDG--------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66 (237)
T ss_pred CEEEEEEEecCCCC--------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh
Confidence 46789999996421 23567888999999999999999999999999999876 5566666543
No 375
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=5.8e-07 Score=85.11 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=45.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 7 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 7 IIETENLNLFYTD----------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred eEEEeeeEEEeCC----------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5789999999975 23678888999999999999999999999999999864
No 376
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=4.3e-07 Score=87.19 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... ..+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYSGSK---------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeCCCC---------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 578999999996311 2567788999999999999999999999999999865 6666666544
No 377
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.27 E-value=6.3e-06 Score=70.90 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcC----ChhHHHHHH-HHHHHhhhCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDED----RRPWLNNIN-RIIHQLNVDNL 111 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~ 111 (433)
.++++++|.||+||||+.+.+.+.+ +...++-.++.-+. ....|.+-..+. .......++ ..++.......
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~---A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~ 80 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEI---AKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMAL 80 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHH---HHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 4899999999999999999999998 77777777664221 112232211110 011112222 22333333332
Q ss_pred cEEEEcCc----------ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHHHH--HhhccCCCC-
Q psy16778 112 TGVLVCSA----------LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM---PADLLESQ--FQTLEEPDP- 175 (433)
Q Consensus 112 ~~Vi~~~~----------~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~~~--~~~~~~~~~- 175 (433)
.+|+|+.. ..+.| .+.+..+..+|.|.++++++..|-.+...+.. ..+.+... +.++....+
T Consensus 81 ~iivDtH~~IkTP~GylpgLP~~--Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A 158 (189)
T COG2019 81 EIIVDTHATIKTPAGYLPGLPSW--VLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYA 158 (189)
T ss_pred ceEEeccceecCCCccCCCCcHH--HHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 36777533 22222 34444335788899998888877544322212 22222211 111111100
Q ss_pred -CCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 176 -LVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 176 -~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
.......+|.+. ..+++.+..|...+
T Consensus 159 ~~~gatVkIV~n~~~~~e~Aa~eiv~~l 186 (189)
T COG2019 159 ILLGATVKIVENHEGDPEEAAEEIVELL 186 (189)
T ss_pred HHhCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 012244555554 89999888887654
No 378
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=5.2e-07 Score=86.81 Aligned_cols=63 Identities=22% Similarity=0.065 Sum_probs=50.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~ 72 (433)
+++++++++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 5 ~l~i~~l~~~~~~~~--------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDSK--------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCCC--------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 688999999996421 13667778999999999999999999999999999876 4555665544
No 379
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=5.1e-07 Score=86.24 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=45.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 13 ~l~i~nl~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 13 IISLQNVTISYGT----------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred eEEEEeEEEEECC----------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5789999999975 23677888999999999999999999999999999863
No 380
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.27 E-value=5.5e-07 Score=94.95 Aligned_cols=51 Identities=18% Similarity=0.025 Sum_probs=45.8
Q ss_pred ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++||++.|+ . ...+.++++++.+|.+++|+|++||||||+.++|++.+
T Consensus 6 ~l~i~~l~~~y~~~----------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 6 IYTMNRVSKVVPPK----------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EEEEeeEEEEeCCC----------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999997 4 23677888999999999999999999999999999865
No 381
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1e-06 Score=78.81 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=51.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
|++.+|++..-.+ -+.+++++++...|++.+|+||+||||||+.|.|++.+ |...+..-.+-
T Consensus 1 mi~a~nls~~~~G----------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~ 66 (259)
T COG4559 1 MIRAENLSYSLAG----------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN 66 (259)
T ss_pred CeeeeeeEEEeec----------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence 4677888877765 45778899999999999999999999999999999988 45666665554
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.27 E-value=6.7e-07 Score=92.90 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=50.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...++...
T Consensus 3 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~ 66 (490)
T PRK10938 3 SLQISQGTFRLSD----------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSH 66 (490)
T ss_pred eEEEEeEEEEcCC----------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcc
Confidence 6899999999975 23678889999999999999999999999999999865 555555443
No 383
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=4.8e-07 Score=87.41 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=52.5
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
|.+++++|++.|+.... -....++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 ~~l~~~~l~~~y~~~~~-----~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (290)
T PRK13634 1 MDITFQKVEHRYQYKTP-----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI 71 (290)
T ss_pred CEEEEEEEEEEECCCCc-----ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 45889999999964210 0023677888999999999999999999999999999865 6666666544
No 384
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.26 E-value=6.4e-07 Score=82.90 Aligned_cols=62 Identities=23% Similarity=0.131 Sum_probs=49.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 3 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 68 (221)
T cd03244 3 IEFKNVSLRYRPNL--------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68 (221)
T ss_pred EEEEEEEEecCCCC--------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence 57889999997421 13678888999999999999999999999999999865 5555655443
No 385
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=5.9e-07 Score=85.94 Aligned_cols=63 Identities=27% Similarity=0.167 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 7 ~l~~~nl~~~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPNSE--------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCCCC--------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Confidence 578999999996311 23567788999999999999999999999999999976 6666666554
No 386
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.26 E-value=5.3e-07 Score=85.47 Aligned_cols=60 Identities=25% Similarity=0.175 Sum_probs=50.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+. ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 2 l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (256)
T TIGR03873 2 LRLSRVSWSAGG----------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL 65 (256)
T ss_pred ceEEeEEEEECC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEc
Confidence 578899999975 23677888999999999999999999999999999865 5566666544
No 387
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.26 E-value=7.4e-07 Score=82.68 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=50.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG 69 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~ 69 (433)
+++++++++.|+.+.. .. -+...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...++.
T Consensus 1 ml~~~~l~~~~~~~~~-~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~ 69 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQ-GG--VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH 69 (224)
T ss_pred CEEEEeeEEEeecccC-CC--cceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence 4789999999974210 00 0123577888999999999999999999999999999876 6666663
No 388
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.25 E-value=4e-06 Score=77.57 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ 75 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~ 75 (433)
+|+|.|++||||||+++.|++.+. +.+++.|.++..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~ 43 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP 43 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence 489999999999999999999883 457888988643
No 389
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=7.5e-07 Score=84.11 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=45.2
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
|++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 2 ~~l~~~~v~~~~~~----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 2 YRIEVENLNTYFDD----------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred cEEEEEeEEEEeCC----------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 37889999999975 23677788999999999999999999999999999753
No 390
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.25 E-value=6.6e-07 Score=84.58 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=49.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--h----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR--L----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~--l----g~~~id~D~~ 72 (433)
++++++|++.|+. -..++++++++.+|.+++|+|++||||||+++.|++. + |..++++..+
T Consensus 7 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVNE----------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeCC----------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 4789999999964 2367788899999999999999999999999999984 1 5556655443
No 391
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.25 E-value=7.5e-07 Score=85.35 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=49.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 20 ~l~~~nl~~~~~~----------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 20 VFEVEGVKVFYGG----------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred eEEEeeEEEEeCC----------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 5788999999975 23577788999999999999999999999999999753 4455655444
No 392
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=6.6e-07 Score=86.03 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=52.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+.... .-+...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE----STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC----CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence 6889999999974210 00123677888999999999999999999999999999865 6666766554
No 393
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.24 E-value=3.5e-07 Score=95.42 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 11 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYSG----------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeCC----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 5789999999975 23567788999999999999999999999999999875 5566666444
No 394
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.24 E-value=6.4e-07 Score=82.90 Aligned_cols=65 Identities=22% Similarity=0.110 Sum_probs=50.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.+++++|++.|+.... ....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~l~~~~v~~~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 69 (221)
T TIGR02211 1 LLKCENLGKRYQEGKL------DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69 (221)
T ss_pred CEEEEeeeEEccCCCc------ceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence 3678999999964110 013567788999999999999999999999999999865 5566665443
No 395
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.5e-06 Score=82.77 Aligned_cols=99 Identities=20% Similarity=0.157 Sum_probs=66.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC---------CeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLG---------VKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg---------~~~id~D~~~ 73 (433)
++++||+.+|.... . ...+++++++++++|++++|+|-|||||||+++.+.+.+. -..+++.++.
T Consensus 2 L~v~nL~v~f~~~~----g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~ 75 (316)
T COG0444 2 LEVKNLSVSFPTDA----G--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75 (316)
T ss_pred ceEeeeEEEEecCC----c--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence 68899999996511 1 2468889999999999999999999999999999999774 2234444433
Q ss_pred ccc-----cccccccCCCCCCc--CChhHHHHHHHHHHHhh
Q psy16778 74 PQS-----NIDKMSAKQPLNDE--DRRPWLNNINRIIHQLN 107 (433)
Q Consensus 74 ~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 107 (433)
.-. ..++...+++||++ ...+.++.-..+.+.+.
T Consensus 76 ~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~ 116 (316)
T COG0444 76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR 116 (316)
T ss_pred cCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence 211 22344567888885 23444444333333333
No 396
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=7.3e-07 Score=84.70 Aligned_cols=51 Identities=25% Similarity=0.168 Sum_probs=45.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 7 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 7 AIKVKDLSFYYNT----------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred eEEEEEEEEEECC----------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5788999999975 23677888999999999999999999999999999864
No 397
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=5.9e-07 Score=88.15 Aligned_cols=66 Identities=20% Similarity=0.070 Sum_probs=51.8
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--------CeEEeCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLG--------VKFIDGDHL 72 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg--------~~~id~D~~ 72 (433)
..+++++|++.|+... . ....+.++++++.+|.+++|+|+|||||||+++.|++.+. ...+++.++
T Consensus 2 ~~L~v~~l~~~~~~~~----~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i 75 (326)
T PRK11022 2 ALLNVDKLSVHFGDES----A--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDL 75 (326)
T ss_pred ceEEEeCeEEEECCCC----c--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEEC
Confidence 0589999999997521 0 1246888999999999999999999999999999999663 245666554
No 398
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.24 E-value=1.1e-05 Score=77.32 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ 75 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~ 75 (433)
.+.+.+|+|.|++||||||+++.|...+. +.++..|.+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~ 106 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHP 106 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccccc
Confidence 46778999999999999999999987763 456788887643
No 399
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=6e-07 Score=86.02 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=50.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.. -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 ml~~~~l~~~~~~~---------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (274)
T PRK13644 1 MIRLENVSYSYPDG---------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT 66 (274)
T ss_pred CEEEEEEEEEcCCC---------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEC
Confidence 47889999999531 12677888999999999999999999999999999865 6566665544
No 400
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.24 E-value=5.2e-07 Score=86.36 Aligned_cols=62 Identities=24% Similarity=0.182 Sum_probs=49.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 6 ~l~~~~l~~~~~~~---------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRNG---------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecCC---------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence 57899999999531 12567788999999999999999999999999999865 5555655443
No 401
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.24 E-value=1.3e-05 Score=86.16 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=76.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc-cCCCCCCcCChhH--HHHHHHHH---HH-h
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS-AKQPLNDEDRRPW--LNNINRII---HQ-L 106 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~---~~-~ 106 (433)
.+.....|+++|++|+||||+++.|++.+++..++++.+........+. .+..+..+..... .+.....+ .. .
T Consensus 211 p~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v 290 (664)
T PTZ00322 211 PMMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFI 290 (664)
T ss_pred ccccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999999999999999988877777765433222222 1222222211111 11112222 12 2
Q ss_pred hhCCCcEEEEcCcccHHHH----HHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCC--CCC----HHhHHHHHhhcc
Q psy16778 107 NVDNLTGVLVCSALRRNYR----DIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEH--FMP----ADLLESQFQTLE 171 (433)
Q Consensus 107 ~~~~~~~Vi~~~~~~~~~~----~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~--~~~----~~~l~~~~~~~~ 171 (433)
...|..+|++.......-| +.+++.+. .+.|..-|+...+.++...|... +.. ...+.+.++.++
T Consensus 291 ~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~ 370 (664)
T PTZ00322 291 CKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLE 370 (664)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 2346667777766444333 44454431 23444466666666666555422 111 133445555555
Q ss_pred CCC
Q psy16778 172 EPD 174 (433)
Q Consensus 172 ~~~ 174 (433)
..|
T Consensus 371 ~~Y 373 (664)
T PTZ00322 371 AVY 373 (664)
T ss_pred hhc
Confidence 555
No 402
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=9e-07 Score=82.68 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=50.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.... ....+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV------QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCCc------ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence 5789999999964110 012567788999999999999999999999999999865 5566666544
No 403
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.23 E-value=6.8e-07 Score=85.30 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=44.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 19 ~l~~~nl~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 19 KMRARDVSVFYGE----------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred eEEEEeEEEEECC----------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4778999999975 23567788999999999999999999999999999864
No 404
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.23 E-value=6.5e-07 Score=84.63 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=44.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+.. ..+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~~~~l~~~~~~~----------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 4 LVSLENVSVSFGQR----------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEeceEEEECCc----------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999752 2566777899999999999999999999999999865
No 405
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=6.5e-07 Score=86.41 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=52.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+.... -....+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++..+
T Consensus 1 mi~~~~v~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 70 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-----FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70 (288)
T ss_pred CEEEEEEEEEeCCCCc-----ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 4789999999974211 0012677888999999999999999999999999999976 6677776554
No 406
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.23 E-value=7.7e-07 Score=79.86 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=47.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.| .+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 4 ~l~~~~l~~~~--------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG--------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe--------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 46788888876 456677889999999999999999999999999976 6667776554
No 407
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.23 E-value=8.8e-07 Score=80.96 Aligned_cols=55 Identities=25% Similarity=0.179 Sum_probs=43.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++|++.|+.... .. ...+.++++++++|.+++|+|++||||||+.+.+++.+
T Consensus 1 l~~~~l~~~~~~~~~---~~--~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 1 ISVEDASFTWDSGEQ---ET--SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CEEeEEEEecCCCCc---cc--cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 468899999975210 00 02567788999999999999999999999999999865
No 408
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=6.3e-07 Score=86.59 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=49.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
.++++|+++.|+.... .....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 6 ~l~i~nl~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 74 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-----FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA 74 (289)
T ss_pred eEEEEEEEEEeCCCCc-----cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 3678999999975220 0012567788999999999999999999999999999876 555665543
No 409
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=6.3e-07 Score=85.91 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=50.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+.. ...+.++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++
T Consensus 1 ~l~~~~l~~~~~~~---------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 66 (275)
T PRK13639 1 ILETRDLKYSYPDG---------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI 66 (275)
T ss_pred CEEEEEEEEEeCCC---------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 47899999999631 12567778999999999999999999999999999865 6566666544
No 410
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.22 E-value=8.6e-07 Score=81.97 Aligned_cols=61 Identities=23% Similarity=0.152 Sum_probs=48.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
++++++++.|+... ...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++..
T Consensus 3 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 67 (220)
T cd03245 3 IEFRNVSFSYPNQE--------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD 67 (220)
T ss_pred EEEEEEEEEcCCCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE
Confidence 67889999996411 23677788999999999999999999999999999865 555565543
No 411
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=6.6e-07 Score=85.94 Aligned_cols=82 Identities=21% Similarity=0.080 Sum_probs=58.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+.... -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++.....
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE-------KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCCCCc-------CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence 5889999999964110 12677788999999999999999999999999999976 767777665532110
Q ss_pred -ccccccCCCCCCc
Q psy16778 78 -IDKMSAKQPLNDE 90 (433)
Q Consensus 78 -~~~~~~~~~~~~~ 90 (433)
......++.++++
T Consensus 77 ~~~~~~i~~v~q~~ 90 (279)
T PRK13650 77 WDIRHKIGMVFQNP 90 (279)
T ss_pred HHHHhhceEEEcCh
Confidence 0112346666654
No 412
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=7.8e-07 Score=85.31 Aligned_cols=51 Identities=24% Similarity=0.098 Sum_probs=44.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 21 ~l~i~nl~~~~~~----------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 21 AMAAVNLTLGFAG----------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred EEEEeeEEEEECC----------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999975 23677888999999999999999999999999999854
No 413
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=7.1e-07 Score=85.90 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. . ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 5 ~l~~~~l~~~~~~-~--------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD-G--------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC-C--------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 6889999999962 1 23677888999999999999999999999999999976 6667776554
No 414
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=5.9e-07 Score=85.85 Aligned_cols=46 Identities=37% Similarity=0.533 Sum_probs=39.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~ 88 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence 577888999999999999999999999999999976 6666766544
No 415
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=8.2e-07 Score=94.98 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=49.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG 69 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~ 69 (433)
+++++||++.||. -..++++++++..|.+++|+|++||||||+.++|++.+ |...++.
T Consensus 1 ~i~i~nls~~~g~----------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~ 62 (638)
T PRK10636 1 MIVFSSLQIRRGV----------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG 62 (638)
T ss_pred CEEEEEEEEEeCC----------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence 4789999999987 33678888999999999999999999999999999965 4455544
No 416
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=8.3e-07 Score=82.90 Aligned_cols=62 Identities=23% Similarity=0.128 Sum_probs=48.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... -..+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 1 i~~~~l~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (234)
T cd03251 1 VEFKNVTFRYPGDG--------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66 (234)
T ss_pred CEEEEEEEEeCCCC--------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh
Confidence 46789999997521 12566777999999999999999999999999999876 5555655443
No 417
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.21 E-value=1.1e-06 Score=81.76 Aligned_cols=64 Identities=27% Similarity=0.216 Sum_probs=50.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+... +...+.+.++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 11 ~l~~~~l~~~~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTRP-------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCCC-------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch
Confidence 578899999996411 013677888999999999999999999999999999875 5555655443
No 418
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.21 E-value=1.3e-06 Score=80.13 Aligned_cols=62 Identities=23% Similarity=0.060 Sum_probs=49.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
.++++++++.|+... -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++..
T Consensus 6 ~l~~~~l~~~~~~~~--------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 71 (207)
T cd03369 6 EIEVENLSVRYAPDL--------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID 71 (207)
T ss_pred eEEEEEEEEEeCCCC--------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 367889999997521 13677888999999999999999999999999999865 555565543
No 419
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.21 E-value=8.9e-07 Score=84.75 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=44.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 25 ~l~~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 25 ALEVRNLNLFYGD----------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EEEEEEEEEEECC----------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4788999999974 23567788999999999999999999999999999863
No 420
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=8.5e-07 Score=82.54 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=49.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ..+.++++++.+|.+++|+|++||||||+.+.|++.+ |...++...+
T Consensus 3 l~~~~l~~~~~~~~---------~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (229)
T cd03254 3 IEFENVNFSYDEKK---------PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI 67 (229)
T ss_pred EEEEEEEEecCCCC---------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence 57889999996411 2677888999999999999999999999999999876 6566665443
No 421
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=7.8e-07 Score=84.46 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=44.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 12 QIKVENLNLWYGE----------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred eEEEeeeEEEeCC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5788999999974 23577788999999999999999999999999999753
No 422
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=8.6e-07 Score=82.95 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=48.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++++++.|+. +.+.+.++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++.
T Consensus 1 l~~~~l~~~~~~-----------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDWKE-----------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEeCC-----------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence 467899999974 1366677999999999999999999999999999965 66677765543
No 423
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=1.1e-06 Score=80.48 Aligned_cols=70 Identities=17% Similarity=0.060 Sum_probs=53.3
Q ss_pred ccccccceeeeccCC--------------ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778 2 AVSNFGNWRYWGMWP--------------PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G 63 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g 63 (433)
++++.+|++.|.-.. ......-..-++++.+++..+|..|+|+|.+|||||||+++|++.+ |
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 678888888884311 0111233445788999999999999999999999999999999977 6
Q ss_pred CeEEeCCC
Q psy16778 64 VKFIDGDH 71 (433)
Q Consensus 64 ~~~id~D~ 71 (433)
...+.++.
T Consensus 83 ~v~v~G~v 90 (249)
T COG1134 83 KVKVTGKV 90 (249)
T ss_pred eEEEcceE
Confidence 66666654
No 424
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=9.8e-07 Score=84.69 Aligned_cols=64 Identities=22% Similarity=0.111 Sum_probs=51.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++||++.|+... ....+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKES-------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCCC-------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 688999999997421 012567788999999999999999999999999999876 6566665443
No 425
>KOG0057|consensus
Probab=98.20 E-value=1.4e-06 Score=87.80 Aligned_cols=80 Identities=24% Similarity=0.153 Sum_probs=61.5
Q ss_pred ccccccceeeeccCCccceeeeeec-ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMT-TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~- 76 (433)
.+.++||++.||+ .+ .+...++++++|+.++|+|.+||||||+.|.|-+-+ |-.+||+-++.+-.
T Consensus 351 ~I~F~dV~f~y~~----------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP----------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSL 420 (591)
T ss_pred cEEEEeeEEEeCC----------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhCh
Confidence 3678999999987 34 677899999999999999999999999999999866 88899998874311
Q ss_pred cccccccCCCCCCcC
Q psy16778 77 NIDKMSAKQPLNDED 91 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~ 91 (433)
..-+...|+++|+..
T Consensus 421 ~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSV 435 (591)
T ss_pred HHhhhheeEeCCccc
Confidence 011223467777643
No 426
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.20 E-value=5.3e-07 Score=93.89 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=51.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 4 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFPG----------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEECC----------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 5789999999975 23677888999999999999999999999999999865 6666766544
No 427
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.19 E-value=1.2e-06 Score=83.77 Aligned_cols=62 Identities=24% Similarity=0.119 Sum_probs=50.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~ 72 (433)
+.++||++.|.... ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 3 i~~~nls~~~~~~~--------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i 67 (275)
T cd03289 3 MTVKDLTAKYTEGG--------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSW 67 (275)
T ss_pred EEEEEEEEEeCCCC--------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEh
Confidence 67899999995322 13677888999999999999999999999999999876 5556665544
No 428
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.19 E-value=1.4e-06 Score=77.01 Aligned_cols=51 Identities=24% Similarity=0.037 Sum_probs=43.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++++.|+.. ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus 1 i~~~~~~~~~~~~---------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 1 IELENLSLATPDG---------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEEEEEcCCC---------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999531 12577888999999999999999999999999999865
No 429
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.18 E-value=1e-06 Score=92.89 Aligned_cols=51 Identities=18% Similarity=0.024 Sum_probs=45.4
Q ss_pred ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++||++.|+ . ...+.++++++.+|.+++|+|++||||||+.++|++.+
T Consensus 4 ~i~~~nls~~~~~~----------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 4 IYTMNRVSKVVPPK----------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EEEEeeEEEecCCC----------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 688999999997 3 23677888999999999999999999999999999865
No 430
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=9.5e-07 Score=85.13 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++|||||||++.|++.+
T Consensus 39 ~l~i~~l~~~~~~----------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 39 VIEARDLNVFYGD----------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred eEEEEEEEEEECC----------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4788999999975 23677888999999999999999999999999999864
No 431
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=1.1e-06 Score=83.67 Aligned_cols=51 Identities=29% Similarity=0.174 Sum_probs=44.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus 7 ~l~~~nl~~~~~~----------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 7 AIKVNNLSFYYDT----------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred eEEEeeEEEEeCC----------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 5789999999975 23677888999999999999999999999999999865
No 432
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.18 E-value=1e-06 Score=94.25 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=49.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG 69 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~ 69 (433)
++++++|++.|+. ...+.++++++..|.+++|+|++|||||||.++|++.+ |...++.
T Consensus 3 ~l~i~~ls~~~~~----------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSFSD----------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEeCC----------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 6899999999986 34677888999999999999999999999999999965 5555544
No 433
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.17 E-value=7.5e-07 Score=82.71 Aligned_cols=38 Identities=26% Similarity=0.172 Sum_probs=34.3
Q ss_pred ecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 25 MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 25 ~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34677888999999999999999999999999999865
No 434
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.17 E-value=8.3e-07 Score=83.11 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=49.9
Q ss_pred cccccceeeeccCCccce-----------eeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEE
Q psy16778 3 VSNFGNWRYWGMWPPQYV-----------VTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFI 67 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~i 67 (433)
+.++|+++.|+.-.-... .+-+...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 357888888876220000 001234778899999999999999999999999999999865 55556
Q ss_pred eCCC
Q psy16778 68 DGDH 71 (433)
Q Consensus 68 d~D~ 71 (433)
+...
T Consensus 81 ~g~~ 84 (236)
T cd03267 81 AGLV 84 (236)
T ss_pred CCEE
Confidence 5543
No 435
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.16 E-value=1.1e-06 Score=95.11 Aligned_cols=63 Identities=27% Similarity=0.138 Sum_probs=53.0
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+... ...++++++++++|+.++|+|++||||||+++.|++.+ |...+|+.++.
T Consensus 452 I~~~nvsf~Y~~~~--------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 452 IEVDRVTFRYRPDG--------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred EEEEEEEEEcCCCC--------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 67889999996422 23677888999999999999999999999999999977 77788876664
No 436
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.16 E-value=1.4e-05 Score=77.23 Aligned_cols=157 Identities=12% Similarity=0.097 Sum_probs=100.9
Q ss_pred hhhcceeecccccCCC--CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778 222 ALKVLRIRPRVMRDLS--KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE 299 (433)
Q Consensus 222 a~~~~~l~pr~l~~~~--~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~ 299 (433)
.|+++.|+|..+...+ ++|++|+++|.++++||+++++. -..+..+|++|.+.|...++--. +.|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 4788999999888775 79999999999999999999982 36788899999999999887773 5666442
Q ss_pred ---hCCCCcceEEEeeccCHHHHHHHHHHHHHcC--CcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcch
Q psy16778 300 ---KTPQTTKWFQLYIYRDREITKSLVQRAEKAG--YKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTK 374 (433)
Q Consensus 300 ---~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag--~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~ 374 (433)
...+.....-+......+-. +.+..-.++| ...+++++ .++++..---.++.|.+..+
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~D~------------ahg~s~~~~~~i~~i~~~~p---- 136 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITIDI------------AHGHSNSVINMIKHIKTHLP---- 136 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEEeC------------ccCchHHHHHHHHHHHHhCC----
Confidence 22111123333333333322 3344445667 46666655 22221101112333333322
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 375 WFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 375 w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
...+......+.+.++++.++|+++|.|++
T Consensus 137 --~~~vi~GnV~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 137 --DSFVIAGNVGTPEAVRELENAGADATKVGI 166 (321)
T ss_pred --CCEEEEecCCCHHHHHHHHHcCcCEEEECC
Confidence 122334446699999999999999999874
No 437
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.15 E-value=4.5e-05 Score=71.57 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP 74 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~ 74 (433)
+|+|+|.|||||||+++.|.+.++ ..+++.|.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998773 56899999986
No 438
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.15 E-value=1.3e-06 Score=94.91 Aligned_cols=64 Identities=25% Similarity=0.110 Sum_probs=53.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|+... -..+++.++++++|+.|+|+|++||||||+++.|++.+ |...+|+-++.
T Consensus 477 ~I~~~~vsf~y~~~~--------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 544 (710)
T TIGR03796 477 YVELRNITFGYSPLE--------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE 544 (710)
T ss_pred eEEEEEEEEecCCCC--------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH
Confidence 367889999997522 23677888999999999999999999999999999977 77778776653
No 439
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=1.3e-06 Score=85.43 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD 70 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D 70 (433)
+++++++++.|+.... .+...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++-
T Consensus 21 ~l~~~nl~~~y~~~~~-----~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~ 88 (320)
T PRK13631 21 ILRVKNLYCVFDEKQE-----NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI 88 (320)
T ss_pred eEEEEeEEEEeCCCCc-----ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence 5789999999964210 0123677888999999999999999999999999999865 65666543
No 440
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.6e-06 Score=72.77 Aligned_cols=63 Identities=24% Similarity=0.191 Sum_probs=49.3
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
|+++.++|+-.=+. -..+.+++++++.|..+.|+|++||||||+.|+|++.+ |..++....+.
T Consensus 1 ~~L~a~~L~~~R~e----------~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~ 67 (209)
T COG4133 1 MMLEAENLSCERGE----------RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ 67 (209)
T ss_pred CcchhhhhhhccCc----------ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc
Confidence 45566666555444 34677888999999999999999999999999999976 66777766554
No 441
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=1.3e-05 Score=73.51 Aligned_cols=119 Identities=21% Similarity=0.215 Sum_probs=72.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE-EeCCCCCcc------------------ccccccccCCCCCCcCC---
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKF-IDGDHLHPQ------------------SNIDKMSAKQPLNDEDR--- 92 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~-id~D~~~~~------------------~~~~~~~~~~~~~~~~~--- 92 (433)
++.+.+|+|-|.||.||||+|..||.+||+.. +++|-+++- ..|..+...... ++--
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~-~piiaGF 164 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE-NPIIAGF 164 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC-cchhhhH
Confidence 56778999999999999999999999999975 666654210 111111100000 0000
Q ss_pred ----hhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHH-HHHhcCCeEEEEE-EcCHHHHHHHHHHhhC
Q psy16778 93 ----RPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRD-IIRNNNRVVFIYL-KAEFGVILSRLQKRAE 155 (433)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~-~l~~~~~~~vv~L-~~~~e~l~~Rl~~R~~ 155 (433)
....-.++.++...+..|.++||.+-...+...+ ...+. +.+..+| -.+++....|...|.+
T Consensus 165 ~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~~~-n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 165 EDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEALGN-NVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhhcc-ceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1112246777888888999999987665554422 22222 1234444 5567788888877763
No 442
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.15 E-value=1.4e-06 Score=81.67 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=48.3
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
++++++++.|+..+ +...+.++++++.+|.+++|+|++||||||+++.|++.+ |...+++.+
T Consensus 1 l~i~~l~~~~~~~~-------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~ 66 (238)
T cd03249 1 IEFKNVSFRYPSRP-------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD 66 (238)
T ss_pred CeEEEEEEecCCCC-------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe
Confidence 46789999996411 012567788999999999999999999999999999875 555555543
No 443
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.14 E-value=1.1e-05 Score=68.76 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcC--ChhHHHHHHHHHHHhhhCCCcE
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDED--RRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
+...++-|++||||||+-..+-..+ ++.++++|.+..+ +..+++. ....-+.....+..+...+.+.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~---------i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F 72 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ---------ISPDNPTSAAIQAARVAIDRIARLIDLGRPF 72 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh---------cCCCCchHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3456778999999999976554444 7789999987422 1222221 1222234455566667777777
Q ss_pred EEEcCcccHHHHHHHHhcCC----eEEEEEEcC-HHHHHHHHHHhh---CCCCCHHhHHHHHhhc
Q psy16778 114 VLVCSALRRNYRDIIRNNNR----VVFIYLKAE-FGVILSRLQKRA---EHFMPADLLESQFQTL 170 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~----~~vv~L~~~-~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~ 170 (433)
...+.-..+..++.++.... ....|+..+ .|.-.+|+..|. ++..+.+.+++.+.+.
T Consensus 73 ~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rs 137 (187)
T COG4185 73 IAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRS 137 (187)
T ss_pred ceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 77665555556665554322 334455444 678888988874 6777777776665543
No 444
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.3e-06 Score=83.22 Aligned_cols=51 Identities=20% Similarity=0.095 Sum_probs=44.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|+. ...+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus 16 ~l~~~~l~~~~~~----------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 16 KSEVNKLNFYYGG----------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eEEEEEEEEEECC----------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 4678899999975 23677888999999999999999999999999999753
No 445
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=1.5e-06 Score=91.16 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=45.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 1 ml~i~~ls~~~~~----------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 1 MLSTANITMQFGA----------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CEEEEEEEEEeCC----------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999975 23677888999999999999999999999999999865
No 446
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=1.2e-06 Score=91.26 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~ 72 (433)
+++++|+++.|+. ...++++++++.+|.+++|+|++||||||+.++|++.+ |..++++.++
T Consensus 5 ~l~~~nl~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFGG----------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeCC----------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 5899999999975 34678888999999999999999999999999999865 3345555443
No 447
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.13 E-value=1.7e-06 Score=81.75 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=42.6
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++..
T Consensus 7 ~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 7 SVKNLNLWYGS----------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EeeeEEEEECC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999964 34677888999999999999999999999999999863
No 448
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=1.5e-06 Score=81.27 Aligned_cols=61 Identities=26% Similarity=0.150 Sum_probs=48.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++++.|+... ..+.+.++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 l~~~~l~~~~~~~~---------~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~ 65 (236)
T cd03253 1 IEFENVTFAYDPGR---------PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI 65 (236)
T ss_pred CEEEEEEEEeCCCC---------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh
Confidence 46789999995311 2567788999999999999999999999999999865 5556655443
No 449
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.13 E-value=1.8e-06 Score=81.73 Aligned_cols=50 Identities=20% Similarity=0.020 Sum_probs=43.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+. ..+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 4 ~l~~~~l~~~~~~-----------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 4 QIELRNIALQAAQ-----------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEeCeEEEecc-----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999932 2466777999999999999999999999999999864
No 450
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.6e-06 Score=83.66 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=43.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.+++++|++.|+. ...+.++++++..|.+++|+|++||||||+.+.|++.
T Consensus 39 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 39 HVVAKNFSIYYGE----------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEeeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3678899999975 2356778899999999999999999999999999984
No 451
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.12 E-value=2.7e-06 Score=88.02 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=46.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.||. -..+.++++++..|..|+|+|.+||||||+.++|++.+
T Consensus 3 ~i~~~~ls~~~g~----------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 3 MITLENLSLAYGD----------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred eEEEeeeEEeeCC----------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999987 44788899999999999999999999999999999876
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.11 E-value=1.6e-05 Score=67.86 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg 63 (433)
.|+|+|++||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999999763
No 453
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.11 E-value=1.7e-06 Score=93.70 Aligned_cols=64 Identities=22% Similarity=0.138 Sum_probs=52.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|+... ...+++.++++++|..|+|+|++||||||+++.|++.+ |...+++.++.
T Consensus 463 ~I~~~~vsf~Y~~~~--------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 463 EIEFRNVSFAYPGQE--------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred eEEEEEEEEEeCCCC--------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 367889999996421 23677888999999999999999999999999999977 77788776653
No 454
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.10 E-value=2.5e-06 Score=90.66 Aligned_cols=62 Identities=23% Similarity=0.190 Sum_probs=51.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++||++.|+.+. -..+++.++++++|..++|+|++||||||+++.|++.+ |...+++.++
T Consensus 342 i~~~~vsf~y~~~~--------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 342 IEFRNVTFTYPGKE--------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred EEEEEEEEecCCCC--------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 67889999996422 12677888999999999999999999999999999977 7777777654
No 455
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.09 E-value=1.9e-06 Score=83.91 Aligned_cols=51 Identities=25% Similarity=0.162 Sum_probs=44.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++.+++|++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 45 ~l~i~nl~~~~~~----------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 45 KLSVEDLDVYYGD----------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eEEEEEEEEEeCC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4788999999975 23677788999999999999999999999999999864
No 456
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.09 E-value=1.8e-06 Score=84.93 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=50.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~ 72 (433)
.++++||++.|+... -....+.++++++.+|.+++|+|.|||||||+++.|++.+ |...+++.++
T Consensus 12 ~L~i~~l~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i 83 (330)
T PRK09473 12 LLDVKDLRVTFSTPD------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI 83 (330)
T ss_pred eEEEeCeEEEEecCC------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEEC
Confidence 478999999995310 0134678888999999999999999999999999999866 3345555544
No 457
>KOG3078|consensus
Probab=98.09 E-value=3.3e-06 Score=77.29 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCC---
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDN--- 110 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 110 (433)
++...+|+|+||+||+|++..+++.+++.|+.+.++.+.........|.-.+. .....--+.+...+...+...
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 67889999999999999999999999999999998865422111111100000 000000011112233223222
Q ss_pred CcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC
Q psy16778 111 LTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF 157 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~ 157 (433)
.+.++++........+.+.+... ..||.|.++.+.+.+|+..|.-++
T Consensus 94 ~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp 142 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHP 142 (235)
T ss_pred cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccC
Confidence 45777776655554444555444 799999999999999999986444
No 458
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.08 E-value=3.4e-06 Score=77.22 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=45.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++++++..|++ -+.+.+.+-.++.|...+|+|++||||||+.++++..+
T Consensus 31 li~l~~v~v~r~g----------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 31 LIELKNVSVRRNG----------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eEEecceEEEECC----------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 5789999999987 55777888999999999999999999999999999864
No 459
>PRK05439 pantothenate kinase; Provisional
Probab=98.08 E-value=2.4e-05 Score=75.55 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ 75 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~ 75 (433)
.+.+.+|+|+|++||||||+++.|+..++ +.++..|.++..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 45667999999999999999999998763 468999998743
No 460
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.08 E-value=2e-06 Score=85.43 Aligned_cols=128 Identities=18% Similarity=0.129 Sum_probs=73.1
Q ss_pred cceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-----c
Q psy16778 7 GNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-----N 77 (433)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-----~ 77 (433)
+|++.|+... + ++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.... .
T Consensus 4 ~l~~~~~~~~-----------~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRLGDFS-----------L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEECCEE-----------E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccc
Confidence 7888997511 2 566889999999999999999999999999976 66667665543210 0
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
......++.+|+....+.++..+++........ .........+.+...+ +--+++..+..+....++|-
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------~~~~~~~~~~~l~~~g--L~~~~~~~~~~LSgGqkqRv 140 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------PSERRISFERVIELLG--IGHLLGRLPGRLSGGEKQRV 140 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------hhHHHHHHHHHHHHcC--ChhHhcCChhhCCHHHHHHH
Confidence 112234666776544444445455433221110 0000112334444432 22345556666666665553
No 461
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.07 E-value=1.8e-06 Score=89.67 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=48.0
Q ss_pred cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 62 (491)
T PRK10982 1 MSNISKSFPG----------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62 (491)
T ss_pred CCceEEEeCC----------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC
Confidence 4688999975 23677888999999999999999999999999999965 6666766554
No 462
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.07 E-value=3.9e-06 Score=79.62 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=49.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++++++++.|+... -..+.++++++.+|.+++|+|++||||||+.+.|++.+ |..++++.++
T Consensus 19 ~i~~~~l~~~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYENNL--------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCCCC--------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence 467899999997521 12566777999999999999999999999999999965 5556655443
No 463
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.07 E-value=2.6e-06 Score=89.36 Aligned_cols=63 Identities=22% Similarity=0.147 Sum_probs=51.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+... -..+++.++++++|..++|+|++||||||+.+.|++.+ |...+++.++.
T Consensus 321 i~~~~v~f~y~~~~--------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~ 387 (529)
T TIGR02857 321 LEFSGLSVAYPGRR--------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA 387 (529)
T ss_pred EEEEEEEEECCCCC--------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehh
Confidence 67889999996422 12577888999999999999999999999999999977 66777776653
No 464
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.06 E-value=2.3e-06 Score=92.97 Aligned_cols=61 Identities=25% Similarity=0.193 Sum_probs=51.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++||++.|+.. ...++++++++++|..++|+|++||||||+++.|++.+ |...+++-++
T Consensus 474 I~~~~vsf~y~~~---------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 474 IVINDVSYSYGYG---------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred EEEEEEEEEcCCC---------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 6788999999631 23677888999999999999999999999999999976 7777777655
No 465
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=3.8e-06 Score=72.74 Aligned_cols=59 Identities=29% Similarity=0.274 Sum_probs=50.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD 70 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D 70 (433)
.+++.++++.||. -+-..+++++.-.|++++|+|.|||||||+.+.|+.++ |...++..
T Consensus 6 LL~V~~lsk~Yg~----------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r 68 (258)
T COG4107 6 LLSVSGLSKLYGP----------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR 68 (258)
T ss_pred ceeehhhhhhhCC----------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence 5788999999987 34566889999999999999999999999999999988 65555553
No 466
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.06 E-value=2.7e-06 Score=80.87 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=44.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+.++.++++|+. -..++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 8 ~~~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 8 VMDCKLDKIFYGN----------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred eEEEEeEEEEeCC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 5678888999976 23677888999999999999999999999999999864
No 467
>KOG0055|consensus
Probab=98.05 E-value=4.6e-06 Score=91.80 Aligned_cols=81 Identities=19% Similarity=0.070 Sum_probs=62.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-cc
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-SN 77 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~~ 77 (433)
+++++|+|.|..-+ ....++++++++..|+.++|+|+|||||||+..+|.+-| |...||+.++..- ..
T Consensus 988 I~~~~V~F~YPsRP-------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRP-------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred EEEeeeEeeCCCCC-------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH
Confidence 57889999996422 356888999999999999999999999999999999877 8889998887532 11
Q ss_pred ccccccCCCCCCc
Q psy16778 78 IDKMSAKQPLNDE 90 (433)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (433)
+-+...+.+-|+|
T Consensus 1061 ~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEP 1073 (1228)
T ss_pred HHHHhcceeccCc
Confidence 1222335555554
No 468
>KOG0055|consensus
Probab=98.05 E-value=3e-06 Score=93.24 Aligned_cols=82 Identities=18% Similarity=0.102 Sum_probs=64.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~ 76 (433)
.++++||.|+|..- ++...++.+++.++.|+.++|+|+|||||||+.++|.+-+ |-.++|+.++..- .
T Consensus 350 ~ief~nV~FsYPsR-------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSR-------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL 422 (1228)
T ss_pred ceEEEEEEecCCCC-------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence 36788888888651 2445777899999999999999999999999999999977 8899999988632 1
Q ss_pred cccccccCCCCCCc
Q psy16778 77 NIDKMSAKQPLNDE 90 (433)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (433)
.+-....|.+.|++
T Consensus 423 ~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEP 436 (1228)
T ss_pred HHHHhhcCeeeech
Confidence 22233557777775
No 469
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.04 E-value=3.1e-06 Score=88.62 Aligned_cols=50 Identities=20% Similarity=0.062 Sum_probs=44.0
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++|+++.|+. ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 1 l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 1 IEVKNLTKKFDG----------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CEEEEEEEEECC----------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 468899999975 24677888999999999999999999999999999973
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.04 E-value=0.00012 Score=75.79 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~ 73 (433)
...+|+|.|+|||||||+++.|++.+ +...|..|.+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 34699999999999999999999987 55688888874
No 471
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.04 E-value=2.4e-06 Score=79.05 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=48.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+.++++++.|+... -+...+.++++++..|.+++|+|++||||||+.+.|++.+ |...+++..+
T Consensus 2 l~~~~l~~~~~~~~------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~ 69 (220)
T TIGR02982 2 ISIRNLNHYYGHGS------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL 69 (220)
T ss_pred EEEEEEEEEccCCC------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh
Confidence 56789999986411 0023677888999999999999999999999999999865 4455554443
No 472
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.03 E-value=3.3e-06 Score=89.47 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=51.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+... ...++++++++++|..++|+|++||||||+.+.|++.+ |...+++.++.
T Consensus 339 i~~~~v~f~y~~~~--------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 339 LTLNNVSFTYPDQP--------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred EEEEEEEEECCCCC--------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 67889999996421 12577888999999999999999999999999999977 77777776553
No 473
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.03 E-value=3.5e-06 Score=91.43 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=52.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+..+ +...+++.++++++|+.++|+|++||||||+.+.|.+.+ |...+|+.++.
T Consensus 479 I~~~nVsf~Y~~~~-------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRP-------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCC-------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 67889999996421 123678899999999999999999999999999999977 77777776553
No 474
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.03 E-value=4.1e-05 Score=74.13 Aligned_cols=37 Identities=35% Similarity=0.545 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~ 72 (433)
.++.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 3457999999999999999999999999999999985
No 475
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.03 E-value=3.4e-06 Score=88.84 Aligned_cols=63 Identities=25% Similarity=0.114 Sum_probs=51.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++++|+++.|+... -..+++.++++++|..++|+|++||||||+++.|++.+ |...+++.++
T Consensus 316 ~i~~~~v~~~y~~~~--------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPGGK--------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCCCC--------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh
Confidence 367889999996421 13578888999999999999999999999999999977 6667766554
No 476
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=4e-06 Score=77.23 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=43.2
Q ss_pred cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
+-+|++.|+.+. . ++++++.+ .+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 3 ~~~l~~~~~~~~-----------~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 60 (214)
T cd03297 3 CVDIEKRLPDFT-----------L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60 (214)
T ss_pred eeeeeEecCCee-----------e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence 458999998722 2 77788999 999999999999999999999865 545555443
No 477
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.02 E-value=3.8e-06 Score=78.02 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=44.0
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.++++++.|.... .....+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 4 ~~~~~~~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 4 LPWWDVGLKAKNWN------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred ceeecceeeeecCc------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45788888886421 1134677888999999999999999999999999999865
No 478
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.02 E-value=3.6e-06 Score=89.07 Aligned_cols=62 Identities=26% Similarity=0.158 Sum_probs=52.0
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
+++++|++.|+. +...+++.++++++|+.++|+|++||||||+.+.|.+.+ |...+|+-++.
T Consensus 329 I~f~~vsf~y~~---------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~ 394 (567)
T COG1132 329 IEFENVSFSYPG---------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394 (567)
T ss_pred EEEEEEEEEcCC---------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence 578899999974 134788899999999999999999999999999999977 66777665553
No 479
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.01 E-value=2.9e-06 Score=88.37 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=44.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 1 ~l~i~~l~~~~~~----------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 1 LLEMKGIVKTFGG----------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred CEEEEeEEEEeCC----------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999975 23677888999999999999999999999999999864
No 480
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.01 E-value=3.6e-06 Score=89.89 Aligned_cols=55 Identities=20% Similarity=0.051 Sum_probs=46.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+... -....+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 12 ~l~v~~l~~~y~~~~------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 12 VLAVENLNIAFMQEQ------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeceEEEecCCC------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 578999999996411 0023677888999999999999999999999999999976
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.01 E-value=3.9e-06 Score=67.81 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=37.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
++.+.++++..+..++|.|+|||||||+++.+. -|...++++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~ 48 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV 48 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence 345566778999999999999999999999988 466677777764
No 482
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.2e-06 Score=89.54 Aligned_cols=51 Identities=24% Similarity=0.128 Sum_probs=44.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 312 ~l~~~~l~~~y~~----------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 312 LLKMEKVSAGYGD----------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred eEEEEeeEEEeCC----------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678889999975 34677888999999999999999999999999999865
No 483
>PLN03073 ABC transporter F family; Provisional
Probab=98.00 E-value=3.6e-06 Score=90.81 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=44.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++++++.||. ...+++.++++..|.+++|+|++||||||+.++|++.
T Consensus 177 ~I~i~nls~~y~~----------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 177 DIHMENFSISVGG----------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred eEEEceEEEEeCC----------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999975 2367888899999999999999999999999999974
No 484
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.00 E-value=4.3e-06 Score=79.62 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=46.7
Q ss_pred ccccccceeeeccCC----------ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWP----------PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++.||.++|.--. .....+-.-..+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467889999996421 0011222333677899999999999999999999999999999865
No 485
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.99 E-value=3e-06 Score=99.39 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=59.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+... ...++++++++.+|.+++|+|++||||||+.++|++.+ |...+++.++.....
T Consensus 928 ~L~I~nLsK~y~~~~--------k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSG--------RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred eEEEEeEEEEecCCC--------ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHH
Confidence 577899999995311 23677888999999999999999999999999999976 666777765532111
Q ss_pred ccccccCCCCCCcCC
Q psy16778 78 IDKMSAKQPLNDEDR 92 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (433)
......|+.+|....
T Consensus 1000 ~~r~~IG~~pQ~~~L 1014 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNIL 1014 (2272)
T ss_pred HHhhcEEEEecCCcC
Confidence 111234666665433
No 486
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.99 E-value=5.6e-06 Score=76.48 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=46.7
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++.++.+.|+.. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...++...+
T Consensus 2 ~~~~~~~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 65 (218)
T cd03290 2 QVTNGYFSWGSG---------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE 65 (218)
T ss_pred eeeeeEEecCCC---------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence 455677777642 13567788999999999999999999999999999875 5566655443
No 487
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.99 E-value=3.9e-06 Score=87.18 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=44.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++++++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.
T Consensus 260 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 260 RIVLNNGVVSYND----------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred eEEEeceEEEECC----------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4788999999975 2367788899999999999999999999999999984
No 488
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=4e-06 Score=87.97 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=44.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 319 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 319 ALEVENLTKGFDN----------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred eEEEEeeEEeeCC----------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999975 23677888999999999999999999999999999854
No 489
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.99 E-value=5.8e-06 Score=81.21 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=49.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~ 72 (433)
+++++++++.|.... -..++++++++.+|.+++|+|++||||||+.+.|++.. |...+++.++
T Consensus 80 ~i~~~nls~~y~~~~--------~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 80 VFEIRNFNFWYMNRT--------KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred eEEEEeeEEEecCCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 467889999996422 12577788999999999999999999999999999764 4455665554
No 490
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4e-06 Score=89.53 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=52.0
Q ss_pred ccccccceeeeccC-CccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMW-PPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++||++.|+.. ............++++++++.+|.+++|+|++||||||+++.|++.+ |...+++.++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 47889999999621 00000000123677889999999999999999999999999999865 6667766554
No 491
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.97 E-value=4.3e-06 Score=88.08 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=50.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++++|+++.|+... ..+++.++++++|..++|+|++||||||+++.|++.+ |...+++-++
T Consensus 322 ~i~~~~v~f~y~~~~---------~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQDNG---------FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCCCC---------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 367889999995311 2578888999999999999999999999999999876 6666666554
No 492
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.97 E-value=6.6e-05 Score=72.94 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=100.7
Q ss_pred hhhcceeecccccCCC--CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778 222 ALKVLRIRPRVMRDLS--KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE 299 (433)
Q Consensus 222 a~~~~~l~pr~l~~~~--~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~ 299 (433)
.|+++.|.|..|...+ ++|++|+++|.++++||+++++. -.-...+|+.|.+.|...++-- .+.|+..+
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 4889999999887776 78999999999999999999983 2677789999999999987777 25676542
Q ss_pred ---h-CCCCcceEEEeeccCHHHHHHHHHHHHHcCC--cEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcc
Q psy16778 300 ---K-TPQTTKWFQLYIYRDREITKSLVQRAEKAGY--KALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTT 373 (433)
Q Consensus 300 ---~-~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~--~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~ 373 (433)
. .+.+ ...-..+....+.. +.++.-.++|+ ..|++++ +. | .+..+.++.+....
T Consensus 77 ~~r~~~~~~-l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD~--a~-g-------------h~~~~~e~I~~ir~-- 136 (326)
T PRK05458 77 FIKDMHEQG-LIASISVGVKDDEY-DFVDQLAAEGLTPEYITIDI--AH-G-------------HSDSVINMIQHIKK-- 136 (326)
T ss_pred HHHhccccc-cEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEEC--CC-C-------------chHHHHHHHHHHHh--
Confidence 2 2222 23344444433332 33444446655 8887765 22 1 12223332221110
Q ss_pred hhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 374 KWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 374 ~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
.|=...+......|.+.++.+.++|++++.+.
T Consensus 137 ~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 137 HLPETFVIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 12123445555669999999999999997764
No 493
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.97 E-value=3.2e-06 Score=99.14 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=65.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+... ..+++++++++.+|++++|.|++||||||+.++|++.+ |...+++.++.....
T Consensus 1937 ~L~v~nLsK~Y~~~~--------~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTS--------SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred eEEEEEEEEEECCCC--------ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHH
Confidence 477899999997521 23677888999999999999999999999999999976 777777665532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
......|+.+|.......++..+.+
T Consensus 2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L 2033 (2272)
T TIGR01257 2009 DVHQNMGYCPQFDAIDDLLTGREHL 2033 (2272)
T ss_pred HHhhhEEEEeccccCCCCCCHHHHH
Confidence 1122357777765444444444433
No 494
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.97 E-value=8.6e-06 Score=81.51 Aligned_cols=63 Identities=25% Similarity=0.160 Sum_probs=51.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-ccccccccCCCCCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-SNIDKMSAKQPLND 89 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~~~~~~~~~~~~~~ 89 (433)
.+++.+++...|..++|+|||||||||++|.|.+.. |...+|+-++..+ .+.-+...||..|+
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd 418 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD 418 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccc
Confidence 566889999999999999999999999999999976 8889999888643 22223445777776
No 495
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.97 E-value=5.4e-06 Score=86.99 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=49.4
Q ss_pred ccccccceeeeccC-CccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCC
Q psy16778 2 AVSNFGNWRYWGMW-PPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDH 71 (433)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~ 71 (433)
+++++++++.|+.. .......-....+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~ 348 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQP 348 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEE
Confidence 57899999999520 00000000023677889999999999999999999999999999865 444555543
No 496
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.96 E-value=5.4e-06 Score=89.89 Aligned_cols=64 Identities=25% Similarity=0.211 Sum_probs=52.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.+++++|++.|+... ...+++.++++++|..++|+|++||||||+++.|++.+ |...+++-++.
T Consensus 455 ~i~~~~vsf~y~~~~--------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 455 AITFENIRFRYAPDS--------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred eEEEEEEEEEcCCCC--------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 367889999996422 23577888999999999999999999999999999977 77778776653
No 497
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.96 E-value=4.6e-06 Score=75.33 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=39.2
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 56 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL 56 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence 677888999999999999999999999999999865 5566665544
No 498
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.96 E-value=7.4e-06 Score=79.56 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=49.1
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++|+++-|-++.+ .+.+.++++++|++++|+|.+||||||+++.|.+.+ |-.++|+..+-
T Consensus 323 lelrnvrfay~~~~F---------hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 323 LELRNVRFAYQDNAF---------HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388 (546)
T ss_pred eeeeeeeeccCcccc---------eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence 567888888866431 344556899999999999999999999999999966 77777776653
No 499
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.96 E-value=4.4e-06 Score=89.48 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=44.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++||++.|+. ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 319 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 319 VFEMENVNYQIDG----------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred eEEEeeeEEEECC----------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4778899999975 23678888999999999999999999999999999865
No 500
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.96 E-value=5.3e-06 Score=88.30 Aligned_cols=62 Identities=19% Similarity=0.095 Sum_probs=51.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++++++.|+.. -..+++.++++++|..|+|+|++||||||+.+.|++.+ |...+|+.++.
T Consensus 341 i~~~~v~f~y~~~---------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 341 IDIDNVSFAYRDD---------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred EEEEEEEEEeCCC---------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 6778899988531 12577888999999999999999999999999999977 77788876653
Done!