Query psy16778
Match_columns 433
No_of_seqs 341 out of 4506
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 21:48:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sgz_A Hydroxyacid oxidase 2; 100.0 9.1E-44 3.1E-48 344.7 9.5 217 188-405 3-245 (352)
2 2nzl_A Hydroxyacid oxidase 1; 100.0 3.3E-33 1.1E-37 277.2 10.9 217 188-405 28-280 (392)
3 2nli_A Lactate oxidase; flavoe 100.0 1.5E-32 5E-37 270.8 11.7 215 188-405 14-257 (368)
4 1p4c_A L(+)-mandelate dehydrog 100.0 5E-31 1.7E-35 261.3 10.8 215 188-405 6-253 (380)
5 1kbi_A Cytochrome B2, L-LCR; f 100.0 3.8E-31 1.3E-35 270.6 10.3 213 188-405 123-371 (511)
6 1gox_A (S)-2-hydroxy-acid oxid 100.0 5.7E-31 2E-35 260.4 10.8 216 188-405 5-253 (370)
7 4eun_A Thermoresistant glucoki 99.9 1E-20 3.5E-25 171.4 15.9 168 34-203 25-193 (200)
8 1knq_A Gluconate kinase; ALFA/ 99.8 3.3E-20 1.1E-24 164.1 17.0 165 36-201 6-171 (175)
9 3t61_A Gluconokinase; PSI-biol 99.8 3.1E-19 1.1E-23 161.7 14.9 160 37-202 17-178 (202)
10 3sgz_A Hydroxyacid oxidase 2; 99.8 3.2E-21 1.1E-25 186.8 0.5 140 289-428 3-178 (352)
11 3vaa_A Shikimate kinase, SK; s 99.7 2.3E-18 7.7E-23 155.8 7.7 168 26-201 13-193 (199)
12 3nwj_A ATSK2; P loop, shikimat 99.7 3E-18 1E-22 160.0 2.1 183 2-202 17-235 (250)
13 3trf_A Shikimate kinase, SK; a 99.7 5.3E-17 1.8E-21 144.6 6.8 158 37-204 4-175 (185)
14 3uie_A Adenylyl-sulfate kinase 99.7 2.3E-16 7.7E-21 142.7 11.0 158 33-202 20-193 (200)
15 1qhx_A CPT, protein (chloramph 99.6 1.1E-14 3.7E-19 128.6 16.3 159 37-202 2-177 (178)
16 2iyv_A Shikimate kinase, SK; t 99.6 4.8E-16 1.6E-20 138.3 6.0 156 38-205 2-170 (184)
17 3kb2_A SPBC2 prophage-derived 99.6 4.7E-15 1.6E-19 130.0 11.0 147 39-203 2-166 (173)
18 1kag_A SKI, shikimate kinase I 99.6 1.6E-16 5.5E-21 139.8 1.5 159 36-201 2-170 (173)
19 1zuh_A Shikimate kinase; alpha 99.6 5.7E-16 2E-20 135.8 4.2 151 39-201 8-167 (168)
20 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 2.3E-14 7.9E-19 134.9 15.4 157 36-203 2-173 (260)
21 2pt5_A Shikimate kinase, SK; a 99.6 4.5E-15 1.6E-19 129.8 8.9 152 39-202 1-162 (168)
22 1via_A Shikimate kinase; struc 99.6 4.1E-16 1.4E-20 137.7 2.1 154 39-203 5-166 (175)
23 1e6c_A Shikimate kinase; phosp 99.6 3.8E-15 1.3E-19 130.9 7.8 153 39-203 3-170 (173)
24 2rhm_A Putative kinase; P-loop 99.5 7.8E-15 2.7E-19 131.1 8.6 156 35-200 2-185 (193)
25 3umf_A Adenylate kinase; rossm 99.5 5.5E-15 1.9E-19 134.8 7.2 169 31-203 22-213 (217)
26 2vli_A Antibiotic resistance p 99.5 5.5E-14 1.9E-18 124.6 13.5 161 36-205 3-173 (183)
27 1ly1_A Polynucleotide kinase; 99.5 7.5E-15 2.6E-19 129.7 6.5 158 38-201 2-170 (181)
28 3lw7_A Adenylate kinase relate 99.5 4.3E-14 1.5E-18 123.9 9.8 156 39-201 2-174 (179)
29 2cdn_A Adenylate kinase; phosp 99.5 5E-14 1.7E-18 127.1 10.2 168 34-201 16-199 (201)
30 3sr0_A Adenylate kinase; phosp 99.5 7E-15 2.4E-19 133.3 4.5 164 39-202 1-203 (206)
31 2qr6_A IMP dehydrogenase/GMP r 99.5 6.5E-16 2.2E-20 154.1 -2.9 182 209-405 23-239 (393)
32 2yvu_A Probable adenylyl-sulfa 99.5 5.2E-14 1.8E-18 125.4 9.4 161 32-201 7-181 (186)
33 2c95_A Adenylate kinase 1; tra 99.5 1.2E-13 4.3E-18 123.6 10.7 163 35-201 6-191 (196)
34 2bwj_A Adenylate kinase 5; pho 99.5 3.3E-13 1.1E-17 121.1 11.7 161 36-201 10-194 (199)
35 1ukz_A Uridylate kinase; trans 99.5 9E-13 3.1E-17 118.9 14.6 166 32-201 9-199 (203)
36 1tev_A UMP-CMP kinase; ploop, 99.4 1.2E-13 4.1E-18 123.4 8.3 160 37-201 2-192 (196)
37 3cm0_A Adenylate kinase; ATP-b 99.4 4.7E-14 1.6E-18 125.4 5.5 161 36-200 2-183 (186)
38 2nzl_A Hydroxyacid oxidase 1; 99.4 2.7E-14 9.1E-19 141.5 4.2 140 289-428 28-203 (392)
39 3be4_A Adenylate kinase; malar 99.4 1.1E-13 3.9E-18 126.5 8.0 118 37-154 4-133 (217)
40 1m7g_A Adenylylsulfate kinase; 99.4 4.6E-13 1.6E-17 121.8 11.6 157 34-202 21-201 (211)
41 1qf9_A UMP/CMP kinase, protein 99.4 1E-13 3.5E-18 123.6 6.7 165 36-201 4-189 (194)
42 3r2g_A Inosine 5'-monophosphat 99.4 1.3E-13 4.4E-18 134.1 7.4 159 221-406 8-170 (361)
43 1y63_A LMAJ004144AAA protein; 99.4 1E-13 3.6E-18 123.4 6.1 154 32-196 4-167 (184)
44 3fdi_A Uncharacterized protein 99.4 1.4E-13 4.8E-18 124.4 6.8 158 37-203 5-198 (201)
45 1zak_A Adenylate kinase; ATP:A 99.4 1E-13 3.6E-18 127.1 5.2 160 36-201 3-208 (222)
46 1ltq_A Polynucleotide kinase; 99.4 2.8E-13 9.7E-18 129.9 7.7 132 38-172 2-145 (301)
47 3tlx_A Adenylate kinase 2; str 99.4 3.1E-13 1.1E-17 125.8 7.4 164 35-200 26-240 (243)
48 3fb4_A Adenylate kinase; psych 99.4 1.9E-13 6.5E-18 124.6 5.3 162 39-201 1-212 (216)
49 1aky_A Adenylate kinase; ATP:A 99.4 2.3E-13 8E-18 124.5 5.7 116 36-154 2-133 (220)
50 2xb4_A Adenylate kinase; ATP-b 99.4 3.6E-13 1.2E-17 123.7 6.8 115 39-154 1-127 (223)
51 3dl0_A Adenylate kinase; phosp 99.4 5.1E-13 1.8E-17 121.8 7.3 161 39-201 1-212 (216)
52 4e22_A Cytidylate kinase; P-lo 99.4 2.8E-12 9.4E-17 120.1 12.1 161 36-202 25-243 (252)
53 1zd8_A GTP:AMP phosphotransfer 99.4 2.5E-13 8.7E-18 124.9 4.6 118 36-154 5-129 (227)
54 3hdt_A Putative kinase; struct 99.4 1.6E-12 5.5E-17 119.1 9.5 158 37-202 13-217 (223)
55 3sr7_A Isopentenyl-diphosphate 99.4 3.6E-13 1.2E-17 131.6 5.4 171 221-405 54-237 (365)
56 3zvl_A Bifunctional polynucleo 99.4 4.8E-12 1.6E-16 127.0 13.6 123 32-175 252-384 (416)
57 3gmt_A Adenylate kinase; ssgci 99.4 2.2E-13 7.4E-18 124.7 3.5 113 38-154 8-132 (230)
58 1p0k_A Isopentenyl-diphosphate 99.3 6.9E-13 2.4E-17 130.1 6.8 177 220-406 22-210 (349)
59 3iij_A Coilin-interacting nucl 99.3 1.8E-13 6.2E-18 121.1 2.2 153 35-200 8-170 (180)
60 2pbr_A DTMP kinase, thymidylat 99.3 3.9E-12 1.3E-16 113.5 10.9 162 39-203 1-191 (195)
61 1cke_A CK, MSSA, protein (cyti 99.3 3.7E-12 1.3E-16 116.8 11.0 157 37-201 4-220 (227)
62 1ak2_A Adenylate kinase isoenz 99.3 1.1E-12 3.8E-17 121.2 7.0 160 34-201 12-228 (233)
63 1e4v_A Adenylate kinase; trans 99.3 3E-12 1E-16 116.6 9.7 116 39-154 1-124 (214)
64 2wwf_A Thymidilate kinase, put 99.3 9.8E-13 3.3E-17 119.3 6.2 167 35-203 7-199 (212)
65 2grj_A Dephospho-COA kinase; T 99.3 2.4E-12 8.3E-17 115.3 8.7 146 38-201 12-184 (192)
66 3tr0_A Guanylate kinase, GMP k 99.3 2.8E-11 9.6E-16 109.0 15.8 161 33-201 2-184 (205)
67 4i1u_A Dephospho-COA kinase; s 99.3 1.5E-12 5.2E-17 117.6 7.1 156 39-201 10-199 (210)
68 1nn5_A Similar to deoxythymidy 99.3 4.8E-12 1.6E-16 114.9 10.1 164 35-201 6-198 (215)
69 1uj2_A Uridine-cytidine kinase 99.3 8E-12 2.7E-16 116.8 11.7 162 35-203 19-233 (252)
70 3ake_A Cytidylate kinase; CMP 99.3 2.5E-12 8.5E-17 116.2 7.8 154 39-200 3-205 (208)
71 2pez_A Bifunctional 3'-phospho 99.3 4.1E-12 1.4E-16 112.3 9.0 152 36-201 3-173 (179)
72 3r20_A Cytidylate kinase; stru 99.3 5.2E-12 1.8E-16 116.2 9.9 161 35-205 6-229 (233)
73 1x6v_B Bifunctional 3'-phospho 99.3 9E-12 3.1E-16 129.7 12.9 157 37-202 51-221 (630)
74 1nks_A Adenylate kinase; therm 99.3 1.4E-12 4.6E-17 116.3 5.7 157 39-200 2-192 (194)
75 1vcf_A Isopentenyl-diphosphate 99.3 6.2E-13 2.1E-17 129.5 3.8 167 219-405 24-212 (332)
76 1jjv_A Dephospho-COA kinase; P 99.3 2.2E-12 7.4E-17 116.7 6.7 156 39-201 3-194 (206)
77 2nli_A Lactate oxidase; flavoe 99.3 8.4E-13 2.9E-17 129.8 3.8 133 289-425 14-186 (368)
78 2z0h_A DTMP kinase, thymidylat 99.3 6.8E-12 2.3E-16 112.2 9.4 163 39-203 1-191 (197)
79 3cr8_A Sulfate adenylyltranfer 99.3 3.2E-12 1.1E-16 132.0 7.6 161 34-203 365-539 (552)
80 2plr_A DTMP kinase, probable t 99.3 2E-11 6.9E-16 110.4 11.9 162 37-201 3-205 (213)
81 1vht_A Dephospho-COA kinase; s 99.3 2.4E-12 8.1E-17 117.5 5.4 160 36-201 2-192 (218)
82 2gks_A Bifunctional SAT/APS ki 99.3 3.8E-12 1.3E-16 131.7 7.3 160 36-201 370-538 (546)
83 2qt1_A Nicotinamide riboside k 99.3 3.9E-11 1.3E-15 108.5 13.1 165 33-203 16-205 (207)
84 2if2_A Dephospho-COA kinase; a 99.3 2.4E-12 8.2E-17 116.2 4.8 157 39-203 2-191 (204)
85 2f6r_A COA synthase, bifunctio 99.2 1E-11 3.5E-16 118.0 8.4 160 35-201 72-266 (281)
86 1p4c_A L(+)-mandelate dehydrog 99.2 4.1E-12 1.4E-16 125.6 5.5 133 290-428 7-179 (380)
87 1m8p_A Sulfate adenylyltransfe 99.2 2.7E-12 9.2E-17 133.4 4.4 159 35-202 393-565 (573)
88 1gox_A (S)-2-hydroxy-acid oxid 99.2 6.4E-12 2.2E-16 123.9 6.7 134 290-428 6-179 (370)
89 1q3t_A Cytidylate kinase; nucl 99.2 6.1E-11 2.1E-15 109.7 12.8 159 34-201 12-232 (236)
90 1kht_A Adenylate kinase; phosp 99.2 1.3E-11 4.6E-16 109.7 8.0 158 37-200 2-190 (192)
91 2h92_A Cytidylate kinase; ross 99.2 2E-11 6.9E-16 111.3 9.2 158 37-201 2-215 (219)
92 2p5t_B PEZT; postsegregational 99.2 4.8E-11 1.6E-15 111.6 11.7 121 34-154 28-158 (253)
93 1uf9_A TT1252 protein; P-loop, 99.2 5E-12 1.7E-16 113.7 3.4 160 36-202 6-192 (203)
94 2jaq_A Deoxyguanosine kinase; 99.2 2.2E-11 7.4E-16 109.5 7.5 154 39-201 1-198 (205)
95 4eaq_A DTMP kinase, thymidylat 99.2 2E-10 6.9E-15 105.7 14.0 166 35-201 23-222 (229)
96 1kbi_A Cytochrome B2, L-LCR; f 99.2 3E-12 1E-16 130.9 1.6 142 281-426 115-301 (511)
97 2v54_A DTMP kinase, thymidylat 99.2 1.5E-10 5.1E-15 104.1 11.5 159 36-201 2-188 (204)
98 2qor_A Guanylate kinase; phosp 99.2 1.2E-10 4.2E-15 105.1 10.9 161 34-201 8-194 (204)
99 2bdt_A BH3686; alpha-beta prot 99.2 1.9E-10 6.4E-15 102.4 11.6 152 38-198 2-168 (189)
100 2ze6_A Isopentenyl transferase 99.1 4.1E-10 1.4E-14 105.3 13.6 134 39-174 2-164 (253)
101 2j41_A Guanylate kinase; GMP, 99.1 2.4E-10 8.2E-15 102.9 9.4 161 34-202 2-185 (207)
102 1zp6_A Hypothetical protein AT 99.1 1.8E-10 6.2E-15 102.5 8.2 160 35-201 6-173 (191)
103 3lnc_A Guanylate kinase, GMP k 99.1 4.5E-10 1.5E-14 103.3 10.7 173 20-201 9-206 (231)
104 3v9p_A DTMP kinase, thymidylat 99.1 8.4E-11 2.9E-15 107.9 5.1 174 27-201 14-224 (227)
105 4edh_A DTMP kinase, thymidylat 99.1 6.8E-10 2.3E-14 100.9 11.0 166 36-201 4-204 (213)
106 1gvn_B Zeta; postsegregational 99.0 6.2E-10 2.1E-14 106.0 10.7 119 35-153 30-162 (287)
107 2jeo_A Uridine-cytidine kinase 99.0 7.4E-10 2.5E-14 102.9 10.1 176 22-203 9-235 (245)
108 3tau_A Guanylate kinase, GMP k 99.0 1.3E-09 4.4E-14 98.7 10.3 156 36-201 6-186 (208)
109 3a00_A Guanylate kinase, GMP k 99.0 2E-09 7E-14 95.5 10.7 156 38-201 1-182 (186)
110 3a8t_A Adenylate isopentenyltr 99.0 5E-09 1.7E-13 100.9 13.7 117 37-154 39-195 (339)
111 3lv8_A DTMP kinase, thymidylat 99.0 3.7E-09 1.3E-13 97.5 11.4 167 34-201 23-226 (236)
112 4tmk_A Protein (thymidylate ki 98.9 4.9E-09 1.7E-13 95.2 11.6 164 37-201 2-204 (213)
113 3rlf_A Maltose/maltodextrin im 98.9 6.7E-11 2.3E-15 116.3 -1.9 95 2-107 3-101 (381)
114 4hlc_A DTMP kinase, thymidylat 98.9 6.8E-09 2.3E-13 93.7 11.4 165 37-201 1-198 (205)
115 3vkj_A Isopentenyl-diphosphate 98.9 1.4E-09 4.7E-14 106.6 6.9 171 221-405 27-218 (368)
116 2bbw_A Adenylate kinase 4, AK4 98.9 1.9E-09 6.6E-14 100.1 7.2 117 37-153 26-148 (246)
117 2vp4_A Deoxynucleoside kinase; 98.9 1.9E-10 6.4E-15 106.0 0.1 70 134-203 148-224 (230)
118 3hjn_A DTMP kinase, thymidylat 98.9 4.9E-09 1.7E-13 94.1 8.7 165 39-204 1-192 (197)
119 3fvq_A Fe(3+) IONS import ATP- 98.8 6E-10 2.1E-14 108.7 1.0 94 2-105 4-104 (359)
120 2c6q_A GMP reductase 2; TIM ba 98.8 3E-09 1E-13 103.9 5.7 159 218-406 17-190 (351)
121 2axn_A 6-phosphofructo-2-kinas 98.8 6.6E-09 2.2E-13 106.9 7.5 118 35-154 32-169 (520)
122 3asz_A Uridine kinase; cytidin 98.8 5.7E-08 2E-12 87.6 11.8 40 35-74 3-44 (211)
123 3tmk_A Thymidylate kinase; pho 98.7 4.1E-09 1.4E-13 95.8 4.1 166 36-201 3-200 (216)
124 1vpl_A ABC transporter, ATP-bi 98.7 1E-09 3.6E-14 102.6 -0.0 91 2-102 15-109 (256)
125 2it1_A 362AA long hypothetical 98.7 2.1E-09 7.3E-14 105.2 2.0 94 2-106 3-100 (362)
126 2yyz_A Sugar ABC transporter, 98.7 1.7E-09 5.9E-14 105.7 1.2 92 2-104 3-98 (359)
127 1s96_A Guanylate kinase, GMP k 98.7 7.9E-08 2.7E-12 87.6 11.9 158 34-201 12-195 (219)
128 3tif_A Uncharacterized ABC tra 98.7 1.3E-09 4.5E-14 100.6 -0.2 99 2-106 1-108 (235)
129 3tui_C Methionine import ATP-b 98.7 2.8E-09 9.7E-14 104.1 2.0 100 2-107 24-131 (366)
130 1eep_A Inosine 5'-monophosphat 98.7 5.4E-09 1.9E-13 104.3 4.0 72 221-300 10-83 (404)
131 1sq5_A Pantothenate kinase; P- 98.7 1.7E-09 5.7E-14 104.1 0.1 39 35-73 77-122 (308)
132 1ex7_A Guanylate kinase; subst 98.7 4.3E-08 1.5E-12 86.8 9.2 111 40-155 3-137 (186)
133 2olj_A Amino acid ABC transpor 98.7 1.7E-09 5.8E-14 101.5 -0.1 93 2-104 24-123 (263)
134 1g6h_A High-affinity branched- 98.7 2.2E-09 7.4E-14 100.6 0.6 93 2-104 7-105 (257)
135 1z47_A CYSA, putative ABC-tran 98.7 2E-09 6.8E-14 105.1 0.1 94 2-106 14-112 (355)
136 1v43_A Sugar-binding transport 98.7 2.2E-09 7.7E-14 105.4 0.4 90 2-102 11-104 (372)
137 1g29_1 MALK, maltose transport 98.7 2.6E-09 8.9E-14 105.1 0.9 95 2-106 3-106 (372)
138 3ch4_B Pmkase, phosphomevalona 98.7 1.6E-07 5.5E-12 83.7 12.3 154 37-200 10-186 (202)
139 3ld9_A DTMP kinase, thymidylat 98.7 8.3E-09 2.8E-13 94.2 3.9 165 34-201 17-213 (223)
140 4gp7_A Metallophosphoesterase; 98.7 7.6E-08 2.6E-12 84.1 9.9 124 31-166 2-134 (171)
141 2pcj_A ABC transporter, lipopr 98.7 1.8E-09 6.3E-14 98.9 -0.5 93 2-104 4-105 (224)
142 1b0u_A Histidine permease; ABC 98.7 1.8E-09 6.2E-14 101.3 -0.7 93 2-104 6-116 (262)
143 1ypf_A GMP reductase; GUAC, pu 98.7 1.4E-08 4.9E-13 98.7 5.4 158 218-405 11-177 (336)
144 1oxx_K GLCV, glucose, ABC tran 98.7 1.5E-09 5.2E-14 106.0 -2.0 96 2-105 3-106 (353)
145 3d31_A Sulfate/molybdate ABC t 98.6 2.9E-09 1E-13 103.7 -0.2 92 2-105 1-96 (348)
146 1ji0_A ABC transporter; ATP bi 98.6 2.6E-09 9E-14 98.9 -0.7 92 2-103 6-103 (240)
147 1p5z_B DCK, deoxycytidine kina 98.6 1.5E-09 5.2E-14 101.9 -3.2 68 134-201 176-256 (263)
148 2onk_A Molybdate/tungstate ABC 98.6 9.5E-09 3.2E-13 95.1 2.1 88 2-103 1-92 (240)
149 2d2e_A SUFC protein; ABC-ATPas 98.6 9.2E-09 3.2E-13 95.8 1.2 82 2-93 3-92 (250)
150 3c8u_A Fructokinase; YP_612366 98.6 1.2E-07 4.2E-12 85.5 8.3 39 35-73 19-62 (208)
151 1gtv_A TMK, thymidylate kinase 98.6 8.2E-09 2.8E-13 93.3 0.4 65 134-200 134-210 (214)
152 1z6g_A Guanylate kinase; struc 98.6 1.4E-06 4.7E-11 79.2 15.2 41 27-67 12-53 (218)
153 1mv5_A LMRA, multidrug resista 98.6 1.5E-08 5.3E-13 93.9 2.1 61 2-72 1-66 (243)
154 1sgw_A Putative ABC transporte 98.6 5.8E-09 2E-13 94.8 -0.9 87 2-103 10-100 (214)
155 1a7j_A Phosphoribulokinase; tr 98.6 4.9E-08 1.7E-12 92.9 5.4 38 37-74 4-46 (290)
156 1g8f_A Sulfate adenylyltransfe 98.5 5E-08 1.7E-12 99.5 5.6 37 35-71 392-435 (511)
157 4g1u_C Hemin import ATP-bindin 98.5 1.1E-08 3.8E-13 96.1 0.7 61 2-72 11-75 (266)
158 2ihy_A ABC transporter, ATP-bi 98.5 1E-08 3.6E-13 96.9 0.4 61 2-72 21-85 (279)
159 1bif_A 6-phosphofructo-2-kinas 98.5 8.6E-08 2.9E-12 97.5 7.2 117 36-154 37-173 (469)
160 3d3q_A TRNA delta(2)-isopenten 98.5 8.4E-07 2.9E-11 85.7 13.1 128 38-172 7-155 (340)
161 1kgd_A CASK, peripheral plasma 98.5 1.3E-07 4.5E-12 83.3 6.4 27 37-63 4-30 (180)
162 3gfo_A Cobalt import ATP-bindi 98.5 1.5E-08 5.2E-13 95.6 -0.0 80 2-90 7-93 (275)
163 2cbz_A Multidrug resistance-as 98.5 2.4E-08 8.2E-13 92.2 1.1 53 2-62 3-55 (237)
164 3gd7_A Fusion complex of cysti 98.4 3.5E-08 1.2E-12 97.5 1.2 82 2-91 19-104 (390)
165 1rz3_A Hypothetical protein rb 98.4 9.3E-08 3.2E-12 85.8 3.8 40 35-74 19-63 (201)
166 3crm_A TRNA delta(2)-isopenten 98.4 7E-07 2.4E-11 85.6 9.6 37 37-73 4-40 (323)
167 2zu0_C Probable ATP-dependent 98.4 6.1E-08 2.1E-12 91.1 2.1 61 2-72 20-86 (267)
168 2ocp_A DGK, deoxyguanosine kin 98.4 1.1E-06 3.9E-11 80.9 10.4 30 37-66 1-31 (241)
169 2yz2_A Putative ABC transporte 98.4 9.7E-08 3.3E-12 89.7 3.0 83 1-90 1-87 (266)
170 2ixe_A Antigen peptide transpo 98.4 4.4E-08 1.5E-12 92.3 0.4 84 2-92 16-104 (271)
171 2ff7_A Alpha-hemolysin translo 98.4 4.4E-08 1.5E-12 91.0 -0.0 80 3-92 8-94 (247)
172 2pze_A Cystic fibrosis transme 98.3 5.8E-08 2E-12 89.2 0.3 53 2-62 6-58 (229)
173 3nh6_A ATP-binding cassette SU 98.3 4.8E-08 1.6E-12 93.5 -0.7 81 2-91 53-138 (306)
174 2nq2_C Hypothetical ABC transp 98.3 7E-08 2.4E-12 90.0 0.3 51 2-62 4-55 (253)
175 3ney_A 55 kDa erythrocyte memb 98.3 6.5E-06 2.2E-10 73.4 13.1 29 35-63 16-44 (197)
176 1lvg_A Guanylate kinase, GMP k 98.3 9.1E-06 3.1E-10 72.5 13.7 28 36-63 2-29 (198)
177 2ghi_A Transport protein; mult 98.3 2.4E-07 8.3E-12 86.6 2.8 64 2-72 17-83 (260)
178 1dek_A Deoxynucleoside monopho 98.3 1.4E-06 4.6E-11 80.4 7.8 34 39-72 2-35 (241)
179 3b5x_A Lipid A export ATP-bind 98.3 3.8E-07 1.3E-11 95.3 4.0 84 2-93 341-429 (582)
180 3aez_A Pantothenate kinase; tr 98.2 2.4E-07 8.1E-12 89.1 1.7 40 34-73 86-132 (312)
181 2yhs_A FTSY, cell division pro 98.2 3.2E-06 1.1E-10 85.3 9.6 91 29-119 284-385 (503)
182 3tqc_A Pantothenate kinase; bi 98.2 2.9E-06 1E-10 81.5 7.5 39 35-73 89-134 (321)
183 2pjz_A Hypothetical protein ST 98.2 2.6E-07 8.8E-12 86.6 -0.0 81 2-91 1-85 (263)
184 2qi9_C Vitamin B12 import ATP- 98.2 1.2E-07 4.1E-12 88.1 -2.3 57 2-72 4-63 (249)
185 1htw_A HI0065; nucleotide-bind 98.1 3E-07 1E-11 79.3 -1.1 49 4-62 9-57 (158)
186 3b60_A Lipid A export ATP-bind 98.1 8.8E-07 3E-11 92.5 2.0 84 2-93 341-429 (582)
187 4a82_A Cystic fibrosis transme 98.0 5.8E-07 2E-11 93.8 -0.2 82 2-91 339-425 (578)
188 3b9q_A Chloroplast SRP recepto 98.0 1.1E-05 3.8E-10 77.0 8.5 74 30-103 92-177 (302)
189 3qf4_B Uncharacterized ABC tra 98.0 1.2E-06 4E-11 91.9 1.3 63 2-73 354-420 (598)
190 3exa_A TRNA delta(2)-isopenten 98.0 2E-05 6.7E-10 75.0 9.5 93 37-131 2-111 (322)
191 2qm8_A GTPase/ATPase; G protei 98.0 5.1E-06 1.8E-10 80.6 5.4 61 2-72 29-93 (337)
192 2bbs_A Cystic fibrosis transme 98.0 9.7E-07 3.3E-11 83.8 0.2 49 2-62 40-88 (290)
193 3foz_A TRNA delta(2)-isopenten 98.0 2.7E-05 9.3E-10 73.9 10.0 37 36-72 8-44 (316)
194 2yl4_A ATP-binding cassette SU 98.0 1.5E-06 5.1E-11 91.0 1.3 84 3-93 342-430 (595)
195 3qf4_A ABC transporter, ATP-bi 97.9 2.2E-06 7.7E-11 89.5 2.3 64 2-73 341-408 (587)
196 2v9p_A Replication protein E1; 97.9 1.4E-06 4.8E-11 83.1 0.6 49 3-62 102-150 (305)
197 2og2_A Putative signal recogni 97.9 2.1E-05 7.2E-10 76.7 9.0 90 30-119 149-250 (359)
198 1rj9_A FTSY, signal recognitio 97.9 3.2E-05 1.1E-09 73.9 9.0 84 36-119 100-194 (304)
199 1znw_A Guanylate kinase, GMP k 97.9 9E-06 3.1E-10 73.0 4.8 37 33-69 15-51 (207)
200 3e70_C DPA, signal recognition 97.8 4.4E-05 1.5E-09 73.6 8.8 85 35-119 126-221 (328)
201 3bk7_A ABC transporter ATP-bin 97.8 8.3E-06 2.9E-10 85.2 3.9 47 6-62 95-141 (607)
202 4f4c_A Multidrug resistance pr 97.8 2.1E-06 7.1E-11 97.6 -0.9 65 2-73 1076-1144(1321)
203 1yqt_A RNAse L inhibitor; ATP- 97.8 1.2E-05 4.1E-10 82.9 4.4 47 6-62 25-71 (538)
204 3g5u_A MCG1178, multidrug resi 97.8 3E-06 1E-10 96.1 -0.7 65 2-73 387-455 (1284)
205 1gte_A Dihydropyrimidine dehyd 97.7 8.7E-05 3E-09 82.4 10.9 161 234-405 526-735 (1025)
206 1zu4_A FTSY; GTPase, signal re 97.7 0.0001 3.5E-09 70.8 9.7 44 29-72 96-144 (320)
207 2npi_A Protein CLP1; CLP1-PCF1 97.7 4.2E-06 1.4E-10 84.5 -0.5 40 31-70 131-176 (460)
208 3eph_A TRNA isopentenyltransfe 97.7 0.00014 4.7E-09 71.6 9.9 35 38-72 2-36 (409)
209 4f4c_A Multidrug resistance pr 97.7 5.2E-06 1.8E-10 94.4 -0.5 65 2-73 415-483 (1321)
210 3g5u_A MCG1178, multidrug resi 97.6 1.6E-05 5.4E-10 90.2 2.3 64 3-73 1031-1098(1284)
211 2iw3_A Elongation factor 3A; a 97.6 5.6E-06 1.9E-10 90.2 -1.4 53 2-62 671-723 (986)
212 2iw3_A Elongation factor 3A; a 97.6 1.5E-05 5.2E-10 86.8 1.9 48 3-60 436-483 (986)
213 1pui_A ENGB, probable GTP-bind 97.6 2.3E-05 7.9E-10 70.0 2.8 47 2-61 3-49 (210)
214 2dpy_A FLII, flagellum-specifi 97.6 2.2E-05 7.5E-10 78.8 2.9 51 2-62 131-181 (438)
215 2obl_A ESCN; ATPase, hydrolase 97.5 2.4E-05 8.1E-10 76.1 2.2 51 2-62 45-95 (347)
216 1tf7_A KAIC; homohexamer, hexa 97.5 2.1E-05 7.1E-10 81.0 1.7 60 3-72 13-79 (525)
217 1yqt_A RNAse L inhibitor; ATP- 97.5 2.8E-05 9.5E-10 80.2 2.5 49 3-62 288-336 (538)
218 3bk7_A ABC transporter ATP-bin 97.5 2.6E-05 9E-10 81.4 2.4 50 2-62 357-406 (607)
219 3ozx_A RNAse L inhibitor; ATP 97.5 2.7E-05 9.3E-10 80.2 1.9 49 3-62 270-318 (538)
220 1ye8_A Protein THEP1, hypothet 97.5 6.6E-05 2.3E-09 65.8 3.8 27 39-65 1-27 (178)
221 2x8a_A Nuclear valosin-contain 97.5 4.6E-05 1.6E-09 71.6 3.0 38 28-67 36-73 (274)
222 1ixz_A ATP-dependent metallopr 97.5 2E-05 6.7E-10 73.0 0.4 38 28-67 41-78 (254)
223 1p6x_A Thymidine kinase; P-loo 97.4 0.0003 1E-08 67.7 8.4 29 36-64 5-33 (334)
224 1iy2_A ATP-dependent metallopr 97.4 2.7E-05 9.1E-10 73.3 0.4 38 28-67 65-102 (278)
225 1vma_A Cell division protein F 97.4 0.00035 1.2E-08 66.6 8.2 41 32-72 98-143 (306)
226 2qag_B Septin-6, protein NEDD5 97.4 3E-05 1E-09 77.1 0.8 47 3-61 17-65 (427)
227 2ga8_A Hypothetical 39.9 kDa p 97.4 6.8E-05 2.3E-09 72.5 2.9 28 39-66 25-52 (359)
228 1odf_A YGR205W, hypothetical 3 97.4 0.00014 4.7E-09 68.9 4.9 40 35-74 28-75 (290)
229 2kjq_A DNAA-related protein; s 97.4 0.00014 4.9E-09 61.6 4.5 37 37-73 35-76 (149)
230 3khj_A Inosine-5-monophosphate 97.3 0.00073 2.5E-08 65.8 9.9 152 222-406 14-174 (361)
231 3ec2_A DNA replication protein 97.3 9.1E-05 3.1E-09 64.6 3.1 30 33-62 33-62 (180)
232 3j16_B RLI1P; ribosome recycli 97.3 0.00012 4E-09 76.4 4.0 29 34-62 99-127 (608)
233 3ozx_A RNAse L inhibitor; ATP 97.3 0.00015 5.2E-09 74.6 4.5 45 7-62 4-49 (538)
234 1p9r_A General secretion pathw 97.2 8.6E-05 2.9E-09 73.9 2.1 37 36-72 165-205 (418)
235 2qmh_A HPR kinase/phosphorylas 97.2 0.00022 7.6E-09 63.1 4.3 37 36-73 32-68 (205)
236 1svm_A Large T antigen; AAA+ f 97.2 9.9E-05 3.4E-09 72.5 2.3 41 28-68 159-199 (377)
237 2gza_A Type IV secretion syste 97.2 0.00031 1.1E-08 68.7 5.6 40 29-68 166-209 (361)
238 3euj_A Chromosome partition pr 97.2 0.00014 4.8E-09 73.5 3.3 45 27-72 19-67 (483)
239 1in4_A RUVB, holliday junction 97.2 3.2E-05 1.1E-09 74.9 -1.7 28 39-66 52-79 (334)
240 2eyu_A Twitching motility prot 97.2 0.00024 8.1E-09 66.2 4.1 38 35-72 22-64 (261)
241 1lw7_A Transcriptional regulat 97.2 0.0002 6.9E-09 70.1 3.7 37 30-66 160-198 (365)
242 3b85_A Phosphate starvation-in 97.2 0.00018 6.3E-09 64.6 3.1 26 36-61 20-45 (208)
243 1cr0_A DNA primase/helicase; R 97.2 0.00012 4.2E-09 69.2 2.1 39 24-62 21-59 (296)
244 2i3b_A HCR-ntpase, human cance 97.1 0.00021 7.2E-09 63.2 3.4 25 38-62 1-25 (189)
245 2ehv_A Hypothetical protein PH 97.1 0.00038 1.3E-08 63.6 5.1 39 34-72 26-70 (251)
246 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00022 7.5E-09 64.4 3.3 37 26-62 10-47 (235)
247 1lv7_A FTSH; alpha/beta domain 97.1 0.00038 1.3E-08 64.3 5.0 32 38-69 45-76 (257)
248 1oix_A RAS-related protein RAB 97.1 0.00023 8E-09 62.6 3.4 45 18-62 9-53 (191)
249 4a74_A DNA repair and recombin 97.1 0.00024 8.1E-09 64.2 3.2 30 33-62 20-49 (231)
250 3kta_A Chromosome segregation 97.1 0.00034 1.1E-08 61.0 4.1 31 32-63 21-51 (182)
251 3t15_A Ribulose bisphosphate c 97.1 0.00034 1.2E-08 66.3 4.3 35 35-69 33-67 (293)
252 3cf0_A Transitional endoplasmi 97.0 0.00049 1.7E-08 65.4 5.2 35 35-69 46-80 (301)
253 1f76_A Dihydroorotate dehydrog 97.0 0.0056 1.9E-07 59.0 12.5 43 238-287 42-84 (336)
254 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0007 2.4E-08 62.4 4.8 33 36-68 37-69 (262)
255 3tqf_A HPR(Ser) kinase; transf 96.9 0.0008 2.7E-08 58.1 4.6 37 36-73 14-50 (181)
256 3h4m_A Proteasome-activating n 96.9 0.00091 3.1E-08 62.6 5.3 34 36-69 49-82 (285)
257 4b4t_K 26S protease regulatory 96.9 0.00077 2.6E-08 67.1 5.0 35 36-70 204-238 (428)
258 4b4t_M 26S protease regulatory 96.9 0.00078 2.7E-08 67.1 5.0 35 36-70 213-247 (434)
259 3b9p_A CG5977-PA, isoform A; A 96.9 0.00087 3E-08 63.2 5.1 32 37-68 53-84 (297)
260 3dm5_A SRP54, signal recogniti 96.9 0.0058 2E-07 60.9 11.2 37 37-73 99-140 (443)
261 3sop_A Neuronal-specific septi 96.9 0.00059 2E-08 63.8 3.8 33 39-71 3-39 (270)
262 1g41_A Heat shock protein HSLU 96.8 0.00059 2E-08 68.2 3.9 34 38-71 50-83 (444)
263 4b4t_L 26S protease subunit RP 96.8 0.00084 2.9E-08 67.0 5.0 34 36-69 213-246 (437)
264 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0008 2.7E-08 68.4 4.8 40 27-68 55-94 (499)
265 3hws_A ATP-dependent CLP prote 96.8 0.0007 2.4E-08 66.0 4.0 34 37-70 50-83 (363)
266 3m6a_A ATP-dependent protease 96.8 0.00025 8.6E-09 73.2 0.8 37 31-68 102-138 (543)
267 2f1r_A Molybdopterin-guanine d 96.8 0.00037 1.3E-08 60.5 1.7 24 39-62 3-26 (171)
268 4b4t_J 26S protease regulatory 96.8 0.00098 3.4E-08 65.6 4.9 34 36-69 180-213 (405)
269 3czq_A Putative polyphosphate 96.8 0.0032 1.1E-07 59.4 8.1 104 36-156 84-214 (304)
270 2pt7_A CAG-ALFA; ATPase, prote 96.8 9.4E-05 3.2E-09 71.4 -2.5 40 31-70 164-207 (330)
271 2e6f_A Dihydroorotate dehydrog 96.8 0.011 3.6E-07 56.4 11.9 153 239-405 2-195 (314)
272 2o8b_B DNA mismatch repair pro 96.8 0.00053 1.8E-08 75.6 3.0 35 26-61 770-811 (1022)
273 2qag_C Septin-7; cell cycle, c 96.7 0.00045 1.5E-08 68.7 2.0 44 2-61 11-54 (418)
274 1jbk_A CLPB protein; beta barr 96.7 0.0015 5.1E-08 56.5 5.0 27 36-62 41-67 (195)
275 1n0w_A DNA repair protein RAD5 96.7 0.0011 3.7E-08 60.3 4.0 29 33-61 19-47 (243)
276 3kl4_A SRP54, signal recogniti 96.7 0.0041 1.4E-07 62.0 8.5 38 36-73 95-137 (433)
277 4fo4_A Inosine 5'-monophosphat 96.7 0.0028 9.5E-08 61.7 7.1 154 222-406 15-178 (366)
278 1d2n_A N-ethylmaleimide-sensit 96.7 0.0013 4.4E-08 61.3 4.5 34 36-69 62-95 (272)
279 4b4t_H 26S protease regulatory 96.7 0.0014 4.6E-08 65.6 4.9 36 35-70 240-275 (467)
280 1jub_A Dihydroorotate dehydrog 96.6 0.023 7.8E-07 54.0 13.3 152 241-405 2-192 (311)
281 3ux8_A Excinuclease ABC, A sub 96.6 0.00046 1.6E-08 73.2 1.4 30 26-55 32-61 (670)
282 2p65_A Hypothetical protein PF 96.6 0.0013 4.4E-08 56.7 4.1 27 36-62 41-67 (187)
283 4b4t_I 26S protease regulatory 96.6 0.0015 5E-08 64.7 4.9 35 36-70 214-248 (437)
284 1ls1_A Signal recognition part 96.6 0.002 6.9E-08 61.0 5.7 31 30-62 92-122 (295)
285 2cvh_A DNA repair and recombin 96.6 0.00067 2.3E-08 60.7 2.3 38 34-71 16-55 (220)
286 3ux8_A Excinuclease ABC, A sub 96.6 0.00034 1.2E-08 74.1 0.4 34 26-59 336-369 (670)
287 2ewv_A Twitching motility prot 96.6 0.0012 4.1E-08 64.7 4.2 28 35-62 133-160 (372)
288 1wb9_A DNA mismatch repair pro 96.6 0.00064 2.2E-08 73.1 2.4 51 10-61 580-630 (800)
289 3thx_A DNA mismatch repair pro 96.6 0.00083 2.9E-08 73.3 3.3 53 8-60 632-684 (934)
290 3j16_B RLI1P; ribosome recycli 96.6 0.00063 2.1E-08 71.0 2.1 36 27-62 362-402 (608)
291 1um8_A ATP-dependent CLP prote 96.6 0.0012 4.1E-08 64.6 4.0 34 37-70 71-104 (376)
292 1np6_A Molybdopterin-guanine d 96.6 0.0015 5.3E-08 56.7 4.1 26 37-62 5-30 (174)
293 3eie_A Vacuolar protein sortin 96.6 0.002 6.7E-08 61.7 5.2 33 37-69 50-82 (322)
294 2dr3_A UPF0273 protein PH0284; 96.6 0.0011 3.7E-08 60.4 3.2 40 32-71 17-61 (247)
295 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.3E-08 56.4 4.0 25 38-62 4-28 (169)
296 3jvv_A Twitching mobility prot 96.6 0.0014 4.9E-08 63.7 4.2 27 36-62 121-147 (356)
297 2px0_A Flagellar biosynthesis 96.5 0.0019 6.4E-08 61.2 4.8 37 36-72 103-145 (296)
298 1ewq_A DNA mismatch repair pro 96.5 0.0012 4.1E-08 70.6 3.8 50 8-62 551-600 (765)
299 1ofh_A ATP-dependent HSL prote 96.5 0.0015 5.2E-08 61.6 4.1 32 37-68 49-80 (310)
300 2p67_A LAO/AO transport system 96.5 0.00042 1.4E-08 67.2 0.1 33 30-62 48-80 (341)
301 1pzn_A RAD51, DNA repair and r 96.5 0.0018 6.3E-08 62.8 4.6 31 32-62 125-155 (349)
302 1ypw_A Transitional endoplasmi 96.5 0.0017 5.7E-08 70.2 4.5 36 34-69 234-269 (806)
303 2ce7_A Cell division protein F 96.5 0.0026 8.8E-08 64.3 5.6 32 38-69 49-80 (476)
304 2r62_A Cell division protease 96.4 0.00081 2.8E-08 62.4 1.5 31 39-69 45-75 (268)
305 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0026 9E-08 60.9 5.1 32 36-67 43-75 (322)
306 3d8b_A Fidgetin-like protein 1 96.4 0.0025 8.7E-08 62.0 5.0 34 36-69 115-148 (357)
307 2yv5_A YJEQ protein; hydrolase 96.4 0.0016 5.4E-08 62.0 3.3 26 36-62 163-188 (302)
308 2qp9_X Vacuolar protein sortin 96.4 0.002 7E-08 62.6 4.2 33 37-69 83-115 (355)
309 3n70_A Transport activator; si 96.3 0.0021 7.1E-08 53.9 3.3 27 36-62 22-48 (145)
310 3thx_B DNA mismatch repair pro 96.3 0.00092 3.1E-08 72.7 1.4 35 26-60 661-695 (918)
311 3syl_A Protein CBBX; photosynt 96.3 0.0028 9.7E-08 59.9 4.6 27 36-62 65-91 (309)
312 3bos_A Putative DNA replicatio 96.3 0.0025 8.4E-08 57.5 4.0 36 37-72 51-91 (242)
313 4aby_A DNA repair protein RECN 96.3 0.00055 1.9E-08 68.0 -0.5 37 27-64 50-86 (415)
314 1u0l_A Probable GTPase ENGC; p 96.3 0.0015 5.2E-08 62.0 2.6 27 36-62 167-193 (301)
315 1kjw_A Postsynaptic density pr 96.3 0.01 3.5E-07 56.1 8.2 152 35-201 102-279 (295)
316 3vfd_A Spastin; ATPase, microt 96.3 0.0034 1.2E-07 61.7 5.1 34 37-70 147-180 (389)
317 3pfi_A Holliday junction ATP-d 96.2 0.003 1E-07 60.6 4.4 33 38-70 55-87 (338)
318 1tq4_A IIGP1, interferon-induc 96.2 0.00034 1.2E-08 69.4 -2.3 37 26-62 37-93 (413)
319 1nij_A Hypothetical protein YJ 96.2 0.0019 6.6E-08 61.8 2.9 26 37-62 3-28 (318)
320 1sxj_A Activator 1 95 kDa subu 96.2 0.0035 1.2E-07 64.1 5.0 34 37-70 76-109 (516)
321 1j8m_F SRP54, signal recogniti 96.2 0.0042 1.4E-07 58.8 5.1 41 31-72 92-137 (297)
322 2c9o_A RUVB-like 1; hexameric 96.2 0.0032 1.1E-07 63.4 4.4 33 37-69 62-96 (456)
323 2w58_A DNAI, primosome compone 96.2 0.0032 1.1E-07 55.6 3.9 24 39-62 55-78 (202)
324 2orw_A Thymidine kinase; TMTK, 96.1 0.0035 1.2E-07 54.9 4.0 26 37-62 2-27 (184)
325 2qnr_A Septin-2, protein NEDD5 96.1 0.0015 5.3E-08 62.0 1.7 39 6-60 2-40 (301)
326 2o5v_A DNA replication and rep 96.1 0.0025 8.7E-08 62.0 3.2 33 29-62 18-50 (359)
327 1nlf_A Regulatory protein REPA 96.1 0.0033 1.1E-07 58.8 3.9 29 34-62 26-54 (279)
328 3cf2_A TER ATPase, transitiona 96.1 0.0037 1.3E-07 66.9 4.5 36 35-70 235-270 (806)
329 3czp_A Putative polyphosphate 96.1 0.019 6.6E-07 58.0 9.5 105 35-156 40-171 (500)
330 2ffh_A Protein (FFH); SRP54, s 96.1 0.0061 2.1E-07 60.6 5.7 40 31-72 93-137 (425)
331 3ice_A Transcription terminati 96.1 0.0035 1.2E-07 61.1 3.8 56 3-62 134-198 (422)
332 1l8q_A Chromosomal replication 96.1 0.0037 1.3E-07 59.7 4.0 26 37-62 36-61 (324)
333 1c9k_A COBU, adenosylcobinamid 96.0 0.0029 1E-07 55.2 2.5 30 40-70 1-32 (180)
334 2zan_A Vacuolar protein sortin 96.0 0.0054 1.8E-07 61.5 4.9 32 37-68 166-198 (444)
335 2oap_1 GSPE-2, type II secreti 96.0 0.0031 1.1E-07 64.4 3.0 28 35-62 257-284 (511)
336 3co5_A Putative two-component 95.9 0.0017 5.8E-08 54.3 0.8 31 37-68 26-56 (143)
337 2qby_A CDC6 homolog 1, cell di 95.9 0.0053 1.8E-07 59.5 4.5 33 36-68 43-81 (386)
338 1ko7_A HPR kinase/phosphatase; 95.9 0.0062 2.1E-07 57.9 4.7 36 37-73 143-178 (314)
339 3pvs_A Replication-associated 95.9 0.0068 2.3E-07 60.8 5.2 32 39-70 51-82 (447)
340 2rcn_A Probable GTPase ENGC; Y 95.9 0.0045 1.5E-07 60.1 3.7 26 37-62 214-239 (358)
341 3hu3_A Transitional endoplasmi 95.8 0.0062 2.1E-07 61.8 4.7 35 36-70 236-270 (489)
342 3hr8_A Protein RECA; alpha and 95.8 0.0074 2.5E-07 58.5 5.0 40 34-73 57-101 (356)
343 1njg_A DNA polymerase III subu 95.8 0.0056 1.9E-07 54.8 3.9 27 38-64 45-71 (250)
344 2v1u_A Cell division control p 95.8 0.0048 1.6E-07 59.9 3.6 28 35-62 41-68 (387)
345 1w1w_A Structural maintenance 95.8 0.0072 2.5E-07 60.3 4.9 29 35-63 23-51 (430)
346 1hqc_A RUVB; extended AAA-ATPa 95.8 0.0047 1.6E-07 58.7 3.3 31 37-67 37-67 (324)
347 4fcw_A Chaperone protein CLPB; 95.8 0.0064 2.2E-07 57.4 4.2 24 39-62 48-71 (311)
348 1ep3_A Dihydroorotate dehydrog 95.8 0.013 4.6E-07 55.5 6.5 155 237-405 3-196 (311)
349 2qby_B CDC6 homolog 3, cell di 95.8 0.0074 2.5E-07 58.7 4.7 27 36-62 43-69 (384)
350 3lxx_A GTPase IMAP family memb 95.7 0.0046 1.6E-07 56.2 3.0 26 36-61 27-52 (239)
351 2www_A Methylmalonic aciduria 95.7 0.0068 2.3E-07 58.7 4.3 27 36-62 72-98 (349)
352 2ygr_A Uvrabc system protein A 95.7 0.0018 6.3E-08 70.4 0.2 32 27-58 657-688 (993)
353 1tue_A Replication protein E1; 95.7 0.008 2.7E-07 53.4 4.3 33 35-67 55-87 (212)
354 2gj8_A MNME, tRNA modification 95.7 0.0055 1.9E-07 52.6 3.2 25 37-61 3-27 (172)
355 2vf7_A UVRA2, excinuclease ABC 95.7 0.0011 3.6E-08 71.5 -1.7 34 27-60 512-546 (842)
356 2chg_A Replication factor C sm 95.7 0.0063 2.2E-07 53.8 3.6 24 39-62 39-62 (226)
357 3pih_A Uvrabc system protein A 95.7 0.0033 1.1E-07 68.3 1.9 28 28-55 14-41 (916)
358 3uk6_A RUVB-like 2; hexameric 95.6 0.0068 2.3E-07 58.7 4.0 27 38-64 70-96 (368)
359 2b8t_A Thymidine kinase; deoxy 95.6 0.0082 2.8E-07 54.3 4.2 27 36-62 10-36 (223)
360 2f9l_A RAB11B, member RAS onco 95.6 0.0067 2.3E-07 53.3 3.6 23 39-61 6-28 (199)
361 2vf7_A UVRA2, excinuclease ABC 95.6 0.0029 9.8E-08 68.2 1.3 29 28-56 26-54 (842)
362 1fnn_A CDC6P, cell division co 95.6 0.0088 3E-07 58.2 4.7 23 40-62 46-68 (389)
363 2r44_A Uncharacterized protein 95.6 0.0051 1.7E-07 58.9 2.9 30 38-67 46-75 (331)
364 2r2a_A Uncharacterized protein 95.6 0.0082 2.8E-07 53.3 4.0 25 36-60 3-27 (199)
365 1t9h_A YLOQ, probable GTPase E 95.6 0.0023 7.7E-08 60.9 0.2 30 33-62 168-197 (307)
366 2r6f_A Excinuclease ABC subuni 95.6 0.0018 6.1E-08 70.3 -0.6 32 27-58 639-670 (972)
367 3pxg_A Negative regulator of g 95.6 0.0092 3.2E-07 60.2 4.7 26 37-62 200-225 (468)
368 3p32_A Probable GTPase RV1496/ 95.6 0.01 3.4E-07 57.7 4.8 36 36-71 77-117 (355)
369 1knx_A Probable HPR(Ser) kinas 95.5 0.0066 2.3E-07 57.6 3.2 36 37-73 146-181 (312)
370 1xx6_A Thymidine kinase; NESG, 95.5 0.011 3.9E-07 52.0 4.5 28 35-62 5-32 (191)
371 2ygr_A Uvrabc system protein A 95.5 0.0033 1.1E-07 68.4 1.2 29 28-56 36-64 (993)
372 3rhf_A Putative polyphosphate 95.5 0.029 9.9E-07 52.2 7.4 105 37-158 74-205 (289)
373 1sxj_E Activator 1 40 kDa subu 95.5 0.0072 2.4E-07 58.2 3.5 24 39-62 37-60 (354)
374 2r6f_A Excinuclease ABC subuni 95.5 0.0034 1.2E-07 68.1 1.2 29 28-56 34-62 (972)
375 2zr9_A Protein RECA, recombina 95.5 0.011 3.9E-07 57.2 4.9 40 34-73 57-101 (349)
376 1qhl_A Protein (cell division 95.4 0.0016 5.4E-08 59.2 -1.4 24 39-62 28-51 (227)
377 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0043 1.5E-07 60.6 1.6 30 32-62 18-47 (365)
378 1sxj_C Activator 1 40 kDa subu 95.4 0.0076 2.6E-07 58.0 3.4 22 41-62 49-70 (340)
379 1ypw_A Transitional endoplasmi 95.4 0.0048 1.6E-07 66.6 2.1 35 34-68 507-541 (806)
380 1vhn_A Putative flavin oxidore 95.4 0.025 8.5E-07 54.0 6.9 145 249-405 2-160 (318)
381 2v3c_C SRP54, signal recogniti 95.4 0.011 3.7E-07 59.0 4.4 38 36-73 97-139 (432)
382 3tvt_A Disks large 1 tumor sup 95.3 0.13 4.4E-06 48.3 11.4 111 36-154 98-232 (292)
383 1tf7_A KAIC; homohexamer, hexa 95.3 0.009 3.1E-07 61.2 3.7 30 33-62 276-305 (525)
384 1ni3_A YCHF GTPase, YCHF GTP-b 95.3 0.011 3.6E-07 58.2 4.1 28 34-61 16-43 (392)
385 2wji_A Ferrous iron transport 95.3 0.011 3.6E-07 50.2 3.4 23 39-61 4-26 (165)
386 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.013 4.3E-07 49.4 3.7 25 38-62 23-47 (149)
387 3te6_A Regulatory protein SIR3 95.2 0.011 3.6E-07 56.5 3.5 28 35-62 42-69 (318)
388 3lda_A DNA repair protein RAD5 95.2 0.01 3.5E-07 58.5 3.5 28 33-60 173-200 (400)
389 2wsm_A Hydrogenase expression/ 95.2 0.018 6.2E-07 51.3 4.9 26 37-62 29-54 (221)
390 2xkx_A Disks large homolog 4; 95.2 0.085 2.9E-06 56.1 10.8 154 36-203 529-707 (721)
391 3u61_B DNA polymerase accessor 95.2 0.012 4.1E-07 56.0 3.8 33 37-69 47-79 (324)
392 2wjg_A FEOB, ferrous iron tran 95.2 0.011 3.9E-07 50.9 3.4 25 37-61 6-30 (188)
393 3czp_A Putative polyphosphate 95.2 0.049 1.7E-06 55.1 8.4 104 36-156 298-428 (500)
394 2gco_A H9, RHO-related GTP-bin 95.1 0.013 4.5E-07 51.4 3.8 24 38-61 25-48 (201)
395 1e69_A Chromosome segregation 95.1 0.0073 2.5E-07 57.8 2.1 30 33-63 20-49 (322)
396 2bjv_A PSP operon transcriptio 95.1 0.012 4.2E-07 54.2 3.6 27 37-63 28-54 (265)
397 2z4s_A Chromosomal replication 95.1 0.013 4.3E-07 58.7 3.9 25 38-62 130-154 (440)
398 3t34_A Dynamin-related protein 95.1 0.012 4.2E-07 57.1 3.7 48 4-61 10-57 (360)
399 1sxj_D Activator 1 41 kDa subu 95.1 0.014 4.8E-07 56.0 4.0 25 39-63 59-83 (353)
400 2qen_A Walker-type ATPase; unk 95.0 0.016 5.4E-07 55.3 4.3 33 38-70 31-63 (350)
401 3pih_A Uvrabc system protein A 95.0 0.0059 2E-07 66.4 1.3 29 27-55 599-627 (916)
402 1yrb_A ATP(GTP)binding protein 95.0 0.033 1.1E-06 51.0 6.2 38 34-71 10-51 (262)
403 3cf2_A TER ATPase, transitiona 95.0 0.016 5.5E-07 62.0 4.6 35 36-70 509-543 (806)
404 3ffs_A Inosine-5-monophosphate 95.0 0.041 1.4E-06 54.0 7.1 70 222-299 11-82 (400)
405 1v5w_A DMC1, meiotic recombina 95.0 0.018 6.1E-07 55.6 4.5 29 33-61 117-145 (343)
406 1of1_A Thymidine kinase; trans 95.0 0.0078 2.7E-07 58.6 1.9 28 36-63 47-74 (376)
407 2bov_A RAla, RAS-related prote 95.0 0.016 5.4E-07 50.8 3.8 25 37-61 13-37 (206)
408 1e2k_A Thymidine kinase; trans 95.0 0.0068 2.3E-07 58.1 1.4 27 37-63 3-29 (331)
409 3k1j_A LON protease, ATP-depen 94.9 0.012 4.1E-07 61.4 3.3 31 33-63 55-85 (604)
410 2qgz_A Helicase loader, putati 94.9 0.017 5.7E-07 55.0 4.0 25 38-62 152-176 (308)
411 3pxi_A Negative regulator of g 94.9 0.018 6.2E-07 61.7 4.7 27 36-62 199-225 (758)
412 2j37_W Signal recognition part 94.9 0.026 8.9E-07 57.3 5.6 38 36-73 99-141 (504)
413 4dzz_A Plasmid partitioning pr 94.9 0.077 2.6E-06 46.4 8.1 89 39-131 2-98 (206)
414 1udx_A The GTP-binding protein 94.8 0.004 1.4E-07 61.8 -0.5 32 30-61 149-180 (416)
415 2dyk_A GTP-binding protein; GT 94.8 0.019 6.5E-07 47.9 3.7 23 39-61 2-24 (161)
416 3con_A GTPase NRAS; structural 94.8 0.015 5E-07 50.4 3.1 25 37-61 20-44 (190)
417 1upt_A ARL1, ADP-ribosylation 94.8 0.022 7.6E-07 48.0 4.2 27 35-61 4-30 (171)
418 2zej_A Dardarin, leucine-rich 94.8 0.014 4.8E-07 50.5 2.9 22 39-60 3-24 (184)
419 2ged_A SR-beta, signal recogni 94.8 0.021 7.2E-07 49.5 4.1 26 36-61 46-71 (193)
420 1u94_A RECA protein, recombina 94.8 0.025 8.5E-07 54.9 4.9 39 35-73 60-103 (356)
421 2xxa_A Signal recognition part 94.7 0.033 1.1E-06 55.5 5.7 38 36-73 98-141 (433)
422 1m2o_B GTP-binding protein SAR 94.7 0.019 6.6E-07 49.9 3.6 24 38-61 23-46 (190)
423 2lkc_A Translation initiation 94.6 0.023 8E-07 48.3 3.9 25 36-60 6-30 (178)
424 1kao_A RAP2A; GTP-binding prot 94.6 0.022 7.5E-07 47.6 3.7 24 38-61 3-26 (167)
425 1osn_A Thymidine kinase, VZV-T 94.6 0.01 3.4E-07 57.2 1.6 31 34-64 8-39 (341)
426 3szr_A Interferon-induced GTP- 94.6 0.013 4.3E-07 61.2 2.5 22 41-62 48-69 (608)
427 2z43_A DNA repair and recombin 94.6 0.025 8.5E-07 54.1 4.3 29 34-62 103-131 (324)
428 2j9r_A Thymidine kinase; TK1, 94.6 0.027 9.4E-07 50.3 4.3 28 35-62 25-52 (214)
429 1z2a_A RAS-related protein RAB 94.6 0.021 7.3E-07 47.9 3.5 24 38-61 5-28 (168)
430 2ce2_X GTPase HRAS; signaling 94.6 0.021 7.1E-07 47.6 3.4 23 39-61 4-26 (166)
431 1jr3_A DNA polymerase III subu 94.6 0.024 8.1E-07 54.8 4.2 27 38-64 38-64 (373)
432 2hf9_A Probable hydrogenase ni 94.5 0.026 9E-07 50.3 4.2 26 37-62 37-62 (226)
433 2h57_A ADP-ribosylation factor 94.5 0.018 6.1E-07 49.9 2.9 27 35-61 18-44 (190)
434 1iqp_A RFCS; clamp loader, ext 94.5 0.026 8.8E-07 53.3 4.3 24 39-62 47-70 (327)
435 1g8p_A Magnesium-chelatase 38 94.5 0.013 4.3E-07 56.3 2.0 26 39-64 46-71 (350)
436 2r6a_A DNAB helicase, replicat 94.4 0.012 4.1E-07 59.1 1.8 43 20-62 185-227 (454)
437 2i1q_A DNA repair and recombin 94.4 0.028 9.6E-07 53.6 4.3 28 34-61 94-121 (322)
438 1ega_A Protein (GTP-binding pr 94.4 0.018 6E-07 54.5 2.8 26 36-61 6-31 (301)
439 1r6b_X CLPA protein; AAA+, N-t 94.4 0.095 3.3E-06 56.0 8.8 27 36-62 205-231 (758)
440 1u8z_A RAS-related protein RAL 94.4 0.026 9E-07 47.2 3.6 24 38-61 4-27 (168)
441 3bwd_D RAC-like GTP-binding pr 94.4 0.028 9.7E-07 47.9 3.9 26 36-61 6-31 (182)
442 1nrj_B SR-beta, signal recogni 94.4 0.029 1E-06 49.7 4.0 27 36-62 10-36 (218)
443 3clv_A RAB5 protein, putative; 94.3 0.036 1.2E-06 48.0 4.5 26 36-61 5-30 (208)
444 2vhj_A Ntpase P4, P4; non- hyd 94.3 0.025 8.6E-07 53.8 3.5 35 35-69 120-156 (331)
445 2erx_A GTP-binding protein DI- 94.3 0.026 8.9E-07 47.5 3.3 23 38-60 3-25 (172)
446 3auy_A DNA double-strand break 94.3 0.02 6.7E-07 55.9 2.8 26 39-64 26-52 (371)
447 1ky3_A GTP-binding protein YPT 94.2 0.028 9.6E-07 47.8 3.5 25 37-61 7-31 (182)
448 1c1y_A RAS-related protein RAP 94.2 0.03 1E-06 46.9 3.6 23 39-61 4-26 (167)
449 2chq_A Replication factor C sm 94.2 0.03 1E-06 52.7 3.9 24 39-62 39-62 (319)
450 2nzj_A GTP-binding protein REM 94.2 0.029 1E-06 47.4 3.5 23 38-60 4-26 (175)
451 1ek0_A Protein (GTP-binding pr 94.2 0.03 1E-06 46.9 3.5 23 39-61 4-26 (170)
452 1r6b_X CLPA protein; AAA+, N-t 94.2 0.03 1E-06 60.0 4.3 33 40-72 490-524 (758)
453 2fn4_A P23, RAS-related protei 94.2 0.03 1E-06 47.6 3.5 25 37-61 8-32 (181)
454 1z0j_A RAB-22, RAS-related pro 94.2 0.031 1.1E-06 46.9 3.6 24 38-61 6-29 (170)
455 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.025 8.7E-07 57.4 3.5 27 37-63 40-66 (500)
456 3qks_A DNA double-strand break 94.1 0.031 1.1E-06 49.6 3.7 26 38-63 23-48 (203)
457 2a5j_A RAS-related protein RAB 94.1 0.031 1.1E-06 48.4 3.6 25 37-61 20-44 (191)
458 1z08_A RAS-related protein RAB 94.1 0.032 1.1E-06 47.0 3.6 24 38-61 6-29 (170)
459 2hxs_A RAB-26, RAS-related pro 94.1 0.031 1.1E-06 47.5 3.5 25 37-61 5-29 (178)
460 3lxw_A GTPase IMAP family memb 94.1 0.024 8.2E-07 51.9 2.9 26 36-61 19-44 (247)
461 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.033 1.1E-06 47.3 3.6 23 39-61 8-30 (177)
462 2orv_A Thymidine kinase; TP4A 94.1 0.051 1.7E-06 49.1 5.0 29 34-62 15-43 (234)
463 2oil_A CATX-8, RAS-related pro 94.1 0.031 1E-06 48.5 3.4 26 36-61 23-48 (193)
464 4ag6_A VIRB4 ATPase, type IV s 94.0 0.037 1.3E-06 54.2 4.4 26 37-62 34-59 (392)
465 1g16_A RAS-related protein SEC 94.0 0.032 1.1E-06 46.8 3.5 23 39-61 4-26 (170)
466 3bh0_A DNAB-like replicative h 94.0 0.017 5.9E-07 55.0 1.9 41 22-62 52-92 (315)
467 3c5c_A RAS-like protein 12; GD 94.0 0.032 1.1E-06 48.3 3.5 25 37-61 20-44 (187)
468 1qvr_A CLPB protein; coiled co 94.0 0.029 9.8E-07 61.0 3.8 26 37-62 190-215 (854)
469 2ew1_A RAS-related protein RAB 94.0 0.028 9.6E-07 49.5 3.1 25 37-61 25-49 (201)
470 3tsz_A Tight junction protein 94.0 0.51 1.8E-05 46.1 12.4 100 36-154 230-331 (391)
471 3cbq_A GTP-binding protein REM 94.0 0.024 8.4E-07 49.6 2.6 26 35-60 20-45 (195)
472 4dsu_A GTPase KRAS, isoform 2B 94.0 0.03 1E-06 48.0 3.2 24 38-61 4-27 (189)
473 1z06_A RAS-related protein RAB 94.0 0.034 1.2E-06 48.0 3.5 25 37-61 19-43 (189)
474 3q72_A GTP-binding protein RAD 94.0 0.03 1E-06 46.9 3.1 22 39-60 3-24 (166)
475 3q85_A GTP-binding protein REM 94.0 0.033 1.1E-06 46.8 3.4 22 39-60 3-24 (169)
476 1fzq_A ADP-ribosylation factor 93.9 0.036 1.2E-06 47.7 3.6 26 36-61 14-39 (181)
477 2iwr_A Centaurin gamma 1; ANK 93.9 0.033 1.1E-06 47.5 3.3 25 37-61 6-30 (178)
478 2gf9_A RAS-related protein RAB 93.9 0.04 1.4E-06 47.6 3.9 26 36-61 20-45 (189)
479 1svi_A GTP-binding protein YSX 93.9 0.036 1.2E-06 48.0 3.6 26 36-61 21-46 (195)
480 1sxj_B Activator 1 37 kDa subu 93.9 0.034 1.2E-06 52.4 3.7 23 40-62 44-66 (323)
481 3pqc_A Probable GTP-binding pr 93.9 0.039 1.3E-06 47.6 3.7 26 36-61 21-46 (195)
482 1r2q_A RAS-related protein RAB 93.9 0.038 1.3E-06 46.3 3.5 23 39-61 7-29 (170)
483 3t1o_A Gliding protein MGLA; G 93.8 0.035 1.2E-06 47.9 3.4 25 38-62 14-38 (198)
484 2r8r_A Sensor protein; KDPD, P 93.8 0.068 2.3E-06 48.2 5.2 33 39-71 7-44 (228)
485 1moz_A ARL1, ADP-ribosylation 93.8 0.027 9.3E-07 48.2 2.6 24 36-59 16-39 (183)
486 2p5s_A RAS and EF-hand domain 93.8 0.041 1.4E-06 48.0 3.8 27 35-61 25-51 (199)
487 1ojl_A Transcriptional regulat 93.8 0.057 2E-06 51.0 5.0 36 37-72 24-64 (304)
488 3bc1_A RAS-related protein RAB 93.8 0.039 1.3E-06 47.4 3.5 24 38-61 11-34 (195)
489 3k53_A Ferrous iron transport 93.8 0.037 1.2E-06 51.3 3.5 24 38-61 3-26 (271)
490 2atv_A RERG, RAS-like estrogen 93.7 0.047 1.6E-06 47.5 4.0 26 36-61 26-51 (196)
491 3end_A Light-independent proto 93.7 0.053 1.8E-06 51.1 4.6 36 36-71 39-79 (307)
492 1z0f_A RAB14, member RAS oncog 93.7 0.042 1.4E-06 46.6 3.5 25 37-61 14-38 (179)
493 1xp8_A RECA protein, recombina 93.7 0.057 2E-06 52.5 4.9 39 35-73 71-114 (366)
494 3ihw_A Centg3; RAS, centaurin, 93.7 0.043 1.5E-06 47.4 3.6 25 37-61 19-43 (184)
495 3la6_A Tyrosine-protein kinase 93.7 0.2 6.7E-06 46.9 8.4 37 36-72 90-132 (286)
496 1r8s_A ADP-ribosylation factor 93.7 0.044 1.5E-06 45.8 3.5 22 40-61 2-23 (164)
497 3kkq_A RAS-related protein M-R 93.6 0.048 1.6E-06 46.6 3.9 25 37-61 17-41 (183)
498 2a9k_A RAS-related protein RAL 93.6 0.042 1.4E-06 46.9 3.5 24 38-61 18-41 (187)
499 3tw8_B RAS-related protein RAB 93.6 0.039 1.3E-06 46.8 3.2 23 38-60 9-31 (181)
500 2hup_A RAS-related protein RAB 93.6 0.038 1.3E-06 48.5 3.2 26 36-61 27-52 (201)
No 1
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=100.00 E-value=9.1e-44 Score=344.65 Aligned_cols=217 Identities=30% Similarity=0.446 Sum_probs=187.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++++ ..+.|.+.+++++. |++||++|+|+||+|+|++++||+|++||+++++||++||+|+++
T Consensus 3 ~~~~d~~~~A~~~lp~-~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~ 81 (352)
T 3sgz_A 3 VCLADFKAHAQKQLSK-TSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS 81 (352)
T ss_dssp CSHHHHHHHHHHTSCH-HHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHHHCCH-HHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence 4688999999999987 56888888887665 589999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
|+||+||.++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|++++.++++||+++||++|++|||+|++
T Consensus 82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~ 161 (352)
T 3sgz_A 82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL 161 (352)
T ss_dssp GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 99999999999999999999999999999999999998878899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHHh------------------hCCCcchhh----hhhccCCHHHHHHHHHHHHHcCCcE
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELAE------------------KTPQTTKWF----QLYIYRDREITKSLVQRAEKAGYKA 401 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~~------------------~~~~~~~w~----Qly~~~~~~~~~~~~~ra~~~G~~a 401 (433)
|+|++|.|++|..|+..++..+.+ .+++...|. .+++..+...+.+++++|+++|+++
T Consensus 162 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~ 241 (352)
T 3sgz_A 162 GNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG 241 (352)
T ss_dssp CCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSE
T ss_pred CcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCE
Confidence 999999999998775433322211 001111122 2344445667889999999999999
Q ss_pred EEEe
Q psy16778 402 LVLT 405 (433)
Q Consensus 402 ivlT 405 (433)
|+|+
T Consensus 242 I~vs 245 (352)
T 3sgz_A 242 IVVS 245 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9986
No 2
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=99.98 E-value=3.3e-33 Score=277.17 Aligned_cols=217 Identities=34% Similarity=0.570 Sum_probs=184.9
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++++ ..+.|.+.+++++. |+.+|++|+|+||+|++++++||+|++||+++++||++||+|+++
T Consensus 28 ~~~~d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~ 106 (392)
T 2nzl_A 28 ICINDYEQHAKSVLPK-SIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQR 106 (392)
T ss_dssp CSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHhhCCH-HHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEeccccccc
Confidence 6899999999999987 56788877777665 578999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
+.||+||.+++++|.++|++|++|+.++.++|+++++.++++.|||+|+++|++.+.+++++|+++||+++++|+|+|+.
T Consensus 107 l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~ 186 (392)
T 2nzl_A 107 MAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYL 186 (392)
T ss_dssp GTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred cccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 99999999999999999999999999999999999887778899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHH----------------------hhCCCc-chhhh---------hhccCCHHHHHHHH
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELA----------------------EKTPQT-TKWFQ---------LYIYRDREITKSLV 391 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~----------------------~~~~~~-~~w~Q---------ly~~~~~~~~~~~~ 391 (433)
|+|++|.++++.+|...++..+. ....++ ..|-. +++..+...+.+.+
T Consensus 187 g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~A 266 (392)
T 2nzl_A 187 GNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDA 266 (392)
T ss_dssp CCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHHH
T ss_pred cchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHHH
Confidence 99999999999877554221110 000011 11211 23333455678999
Q ss_pred HHHHHcCCcEEEEe
Q psy16778 392 QRAEKAGYKALVLT 405 (433)
Q Consensus 392 ~ra~~~G~~aivlT 405 (433)
++|+++|+++|+|+
T Consensus 267 ~~a~~aGad~I~vs 280 (392)
T 2nzl_A 267 REAVKHGLNGILVS 280 (392)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHHHcCCCEEEeC
Confidence 99999999999994
No 3
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=99.97 E-value=1.5e-32 Score=270.76 Aligned_cols=215 Identities=26% Similarity=0.383 Sum_probs=172.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++++ ..+.|.+.+++++. |+.+|++|+|+||+|++++++||+|++||+++++||++||+++++
T Consensus 14 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~~g 92 (368)
T 2nli_A 14 VNTYDLEEEASKVVPH-GGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHG 92 (368)
T ss_dssp SCSHHHHHHHHTTSCH-HHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHHhCCH-HHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhhcc
Confidence 6899999999999988 56778888877664 579999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
+.||+||.+++++|.++|++|++|+.++.++|++++..++++.|||||+++|++.+.+++++|+++||+++++|+|+|+.
T Consensus 93 ~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~ 172 (368)
T 2nli_A 93 LAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVS 172 (368)
T ss_dssp GTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC--
T ss_pred CCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 99999999999999999999999999999999998776677899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHH----------hh---C---CCcchhh---------hhhccCCHHHHHHHHHHHHHcC
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELA----------EK---T---PQTTKWF---------QLYIYRDREITKSLVQRAEKAG 398 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~----------~~---~---~~~~~w~---------Qly~~~~~~~~~~~~~ra~~~G 398 (433)
|+|++|.+++|.+| .+++.+. .. . .....|- .+++..++..+.+.+++|+++|
T Consensus 173 g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~G 250 (368)
T 2nli_A 173 GNRDRDVKNKFVYP--FGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRG 250 (368)
T ss_dssp -CBC--------CC--SCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTT
T ss_pred cchhHHHhhcccCc--chhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcC
Confidence 99999999998766 1111110 00 0 0011111 1334444557889999999999
Q ss_pred CcEEEEe
Q psy16778 399 YKALVLT 405 (433)
Q Consensus 399 ~~aivlT 405 (433)
+++|+|+
T Consensus 251 ad~I~vs 257 (368)
T 2nli_A 251 ASGIWVS 257 (368)
T ss_dssp CSEEEEC
T ss_pred CCEEEEc
Confidence 9999984
No 4
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=99.97 E-value=5e-31 Score=261.33 Aligned_cols=215 Identities=27% Similarity=0.460 Sum_probs=180.6
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++++ ..+.|.+.+++++. |+.+|++|+|+||+|++++++|++|++||+++++||++||+|+++
T Consensus 6 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~~ 84 (380)
T 1p4c_A 6 FNVEDYRKLAQKRLPK-MVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNG 84 (380)
T ss_dssp SSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHHhCCH-HHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCccccc
Confidence 5789999999999988 56788888887775 478999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||++|.+++++|.++|+++++|+.++.++|+++++ ++++.|||+|+.+ ++.+.+++++|+++||+++++|+|+|+.
T Consensus 85 ~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~ 162 (380)
T 1p4c_A 85 ALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN 162 (380)
T ss_dssp GTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred cCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence 9999999999999999999999999999999999876 3678999999999 9999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHH----------------HhhC----CCcchh-----h----hhhccCCHHHHHHHHHHH
Q psy16778 344 GTRYADIRNKFNMPSHLNIEEL----------------AEKT----PQTTKW-----F----QLYIYRDREITKSLVQRA 394 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i----------------~~~~----~~~~~w-----~----Qly~~~~~~~~~~~~~ra 394 (433)
|+|++|.++++..|......++ .... .....| . .+++..++..+.+.++++
T Consensus 163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a 242 (380)
T 1p4c_A 163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC 242 (380)
T ss_dssp CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence 9999999999865533222211 0000 001112 1 123333456788999999
Q ss_pred HHcCCcEEEEe
Q psy16778 395 EKAGYKALVLT 405 (433)
Q Consensus 395 ~~~G~~aivlT 405 (433)
.++|+++|+|+
T Consensus 243 ~~aGad~I~vs 253 (380)
T 1p4c_A 243 IAEGADGVILS 253 (380)
T ss_dssp HHTTCSEEEEC
T ss_pred HHcCCCEEEEc
Confidence 99999999994
No 5
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.97 E-value=3.8e-31 Score=270.57 Aligned_cols=213 Identities=29% Similarity=0.376 Sum_probs=180.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++++...+++++++ ..+.|.+.++.++. |+.+|++|+|+||+|++++++||+|+|||+++++||+|||+++++
T Consensus 123 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~~ 201 (511)
T 1kbi_A 123 INLYDFEYLASQTLTK-QAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCK 201 (511)
T ss_dssp CSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHhhCCH-HHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhcc
Confidence 6899999999999987 56888888887665 578999999999999999999999999999999999999999999
Q ss_pred ccCc-cchHHHHHHHHh--cCCceEEecCCCCCHHHHHHhC--CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEee
Q psy16778 264 LAHE-EGEIGNAAAVGE--VGGIYILSTISTTSIEELAEKT--PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 338 (433)
Q Consensus 264 ~~~~-~~e~~~a~aa~~--~g~~~~~s~~s~~~~eeva~~~--~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltv 338 (433)
++|| +||.+++++|.+ +|++|++|+.++.++|++++.. +.++.|||+|+++|++.+.+++++|+++||++|++|+
T Consensus 202 l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itv 281 (511)
T 1kbi_A 202 LGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTV 281 (511)
T ss_dssp GTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred ccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999 999999999999 9999999999999999998765 3578999999999999999999999999999999999
Q ss_pred eecccCccccccccccCCCccc---------------------------hHHHHHhhCCCcchhhhhhccCCHHHHHHHH
Q psy16778 339 DTNVFGTRYADIRNKFNMPSHL---------------------------NIEELAEKTPQTTKWFQLYIYRDREITKSLV 391 (433)
Q Consensus 339 D~~~~G~r~~~~~~~~~~~~~~---------------------------s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~ 391 (433)
|+|.+|+|+++.+++|..|... +.+.|..... ...+++..++..+.+.+
T Consensus 282 d~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~----~~~~PvivKgv~~~e~A 357 (511)
T 1kbi_A 282 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK----KTKLPIVIKGVQRTEDV 357 (511)
T ss_dssp SCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHH----HCSSCEEEEEECSHHHH
T ss_pred CCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHH----HhCCcEEEEeCCCHHHH
Confidence 9999999999999987655311 1111111100 00123333444567889
Q ss_pred HHHHHcCCcEEEEe
Q psy16778 392 QRAEKAGYKALVLT 405 (433)
Q Consensus 392 ~ra~~~G~~aivlT 405 (433)
++|+++|+++|+|+
T Consensus 358 ~~a~~aGad~I~vs 371 (511)
T 1kbi_A 358 IKAAEIGVSGVVLS 371 (511)
T ss_dssp HHHHHTTCSEEEEC
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999994
No 6
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=99.97 E-value=5.7e-31 Score=260.35 Aligned_cols=216 Identities=33% Similarity=0.563 Sum_probs=182.4
Q ss_pred CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778 188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK 263 (433)
Q Consensus 188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~ 263 (433)
.+++|+...+++++++ ..+.|.+.+++++. |+.+|++|+|+||+|++++++|++|++||+++++||++||+|+++
T Consensus 5 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~~ 83 (370)
T 1gox_A 5 TNVNEYEAIAKQKLPK-MVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK 83 (370)
T ss_dssp CSTTHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred CCHHHHHHHHHHhCCH-HHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchhh
Confidence 4688899999999887 55788888877665 578999999999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778 264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343 (433)
Q Consensus 264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~ 343 (433)
++||+||.+++++|.++|++|++|+.++.++||++++.+ ++.|||+|+++|++.+.+++++++++|++++.+|+|+|..
T Consensus 84 l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 84 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 999999999999999999999999999999999998765 7899999999999999999999999999999999999999
Q ss_pred CccccccccccCCCccchHHHHHh--------------------hCCCcchh-----h----hhhccCCHHHHHHHHHHH
Q psy16778 344 GTRYADIRNKFNMPSHLNIEELAE--------------------KTPQTTKW-----F----QLYIYRDREITKSLVQRA 394 (433)
Q Consensus 344 G~r~~~~~~~~~~~~~~s~e~i~~--------------------~~~~~~~w-----~----Qly~~~~~~~~~~~~~ra 394 (433)
|+|+++.++++..|...++..+.+ .......| . .+++..+...+.+.+++|
T Consensus 163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a 242 (370)
T 1gox_A 163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242 (370)
T ss_dssp CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence 999999999987665442222211 00000111 1 123334455678899999
Q ss_pred HHcCCcEEEEe
Q psy16778 395 EKAGYKALVLT 405 (433)
Q Consensus 395 ~~~G~~aivlT 405 (433)
.++|+++|+|+
T Consensus 243 ~~~Gad~I~vs 253 (370)
T 1gox_A 243 VQHGAAGIIVS 253 (370)
T ss_dssp HHTTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 99999999994
No 7
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.85 E-value=1e-20 Score=171.41 Aligned_cols=168 Identities=36% Similarity=0.640 Sum_probs=139.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
...+|.+|+|+|+|||||||+++.|++.+|..++++|++...........++.+++.....+++.+++.+......+..+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 104 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVST 104 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCE
Confidence 34578899999999999999999999999999999999865432333345888887777777788888888777788889
Q ss_pred EEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHH
Q psy16778 114 VLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEG 192 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee 192 (433)
|++++...+.+++.+.+... ..+|||+++++++.+|+.+|.+.+...+.+..+++.+++++ .+.++++||++.++++
T Consensus 105 iid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~--~~~~~~~Id~~~~~~e 182 (200)
T 4eun_A 105 IITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALE--PDESGIVLDLRQPPEQ 182 (200)
T ss_dssp EEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCC--TTSCEEEEETTSCHHH
T ss_pred EEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCC--CCCCeEEEECCCCHHH
Confidence 99999888888888887644 68999999999999999999876667778889998888876 4458899999999999
Q ss_pred HHHHHhcCCCC
Q psy16778 193 IVSKSAIMPPT 203 (433)
Q Consensus 193 ~~~~i~~~l~~ 203 (433)
++++|.+.+..
T Consensus 183 ~~~~I~~~l~~ 193 (200)
T 4eun_A 183 LIERALTWLDI 193 (200)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999887764
No 8
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.84 E-value=3.3e-20 Score=164.06 Aligned_cols=165 Identities=45% Similarity=0.844 Sum_probs=129.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
.++.+|+|+|++||||||+++.|++.+|..++++|++...........|..+++.....+++.+++.+......+..+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 85 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI 85 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEE
Confidence 45789999999999999999999999999999999986432111223466776655566777777777776666778999
Q ss_pred EcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHH
Q psy16778 116 VCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194 (433)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~ 194 (433)
+++...+.+++.+++... ..+|||++|++++.+|+.+|.+.......+..++..++++++ .+.++++||++.+++++.
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Id~~~~~~~~~ 164 (175)
T 1knq_A 86 VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVV 164 (175)
T ss_dssp ECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCT-TCTTEEEEECSSCHHHHH
T ss_pred EeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCccc-CCCCeEEEeCCCCHHHHH
Confidence 988888888888887643 579999999999999999997655556777777777777622 456899999999999999
Q ss_pred HHHhcCC
Q psy16778 195 SKSAIMP 201 (433)
Q Consensus 195 ~~i~~~l 201 (433)
++|.+.+
T Consensus 165 ~~i~~~l 171 (175)
T 1knq_A 165 ASTIEVI 171 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 9
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.81 E-value=3.1e-19 Score=161.71 Aligned_cols=160 Identities=43% Similarity=0.725 Sum_probs=127.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV 116 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~ 116 (433)
++++|+|+|++||||||+++.|++.+|+.++++|.+...........+..++......+++.+.+.+ ..+..+|++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~----~~~~~vivd 92 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL----ASREPVVVS 92 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH----TSSSCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH----hcCCCEEEE
Confidence 3579999999999999999999999999999999987543333344566666554445555444433 567789999
Q ss_pred cCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHH
Q psy16778 117 CSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194 (433)
Q Consensus 117 ~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~ 194 (433)
++.....+++.+.+... ..+|||++|++++.+|+.+|.+...+.+.+..++..+++++ .+.++++|+++.++++++
T Consensus 93 ~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~~~~e~~ 170 (202)
T 3t61_A 93 CSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPR--GEVRTVAVDVAQPLAEIV 170 (202)
T ss_dssp CCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCT--TSTTEEEEESSSCHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCC--CCCCeEEEeCCCCHHHHH
Confidence 99888888888887543 58999999999999999999876666778888888888875 455889999999999999
Q ss_pred HHHhcCCC
Q psy16778 195 SKSAIMPP 202 (433)
Q Consensus 195 ~~i~~~l~ 202 (433)
++|.+.+.
T Consensus 171 ~~I~~~l~ 178 (202)
T 3t61_A 171 REALAGLA 178 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99977654
No 10
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=99.80 E-value=3.2e-21 Score=186.80 Aligned_cols=140 Identities=31% Similarity=0.459 Sum_probs=117.8
Q ss_pred CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc------------
Q psy16778 289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------ 349 (433)
Q Consensus 289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------ 349 (433)
.+..+||++|+...+...|-|+...+++|.+...|+.|.+. .+...++ ++.+.++|++..-
T Consensus 3 ~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l 82 (352)
T 3sgz_A 3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSI 82 (352)
T ss_dssp CSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred CCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHHh
Confidence 45578999999888888999999999999999999999766 7777666 3558888887651
Q ss_pred -----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q psy16778 350 -----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG 412 (433)
Q Consensus 350 -----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g 412 (433)
.+...+ ..+++|+|||+++.++++.|||||+++|+..+.++++||+++||++||||||+|+.|
T Consensus 83 ~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g 162 (352)
T 3sgz_A 83 AWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLG 162 (352)
T ss_dssp TCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCC
T ss_pred cCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 111112 235679999999988778999999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCCCCCC
Q psy16778 413 TRYADIRNKFNMPSHL 428 (433)
Q Consensus 413 ~r~~~~r~~~~~~~~~ 428 (433)
+||+|.|++|++|+++
T Consensus 163 ~R~~d~r~~~~~p~~~ 178 (352)
T 3sgz_A 163 NRRRDKRNQLNLEANI 178 (352)
T ss_dssp CCHHHHHHHHHSCHHH
T ss_pred cchhhhhcCCCCCccc
Confidence 9999999999988543
No 11
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.3e-18 Score=155.76 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=108.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
..++++++++.++++|+|+|+|||||||+++.|++.+|+.++++|++..... +......++ ..++..++.++..+..
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~-~~~~~~~~~~e~~~l~ 89 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFT-ERGEAGFRELERNMLH 89 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHH-hcChHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999998764311 111111111 1223445555554444
Q ss_pred hhhCCCcEEEEcCcc---cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH-HhhCCCC----C----HHhHHHHHhhccCC
Q psy16778 106 LNVDNLTGVLVCSAL---RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ-KRAEHFM----P----ADLLESQFQTLEEP 173 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~---~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~-~R~~~~~----~----~~~l~~~~~~~~~~ 173 (433)
.+..+.++||++++. ....++.+.+. ..+|||++|++++.+|+. .|..++. . .+.+...+..+.+.
T Consensus 90 ~l~~~~~~vi~~ggg~~~~~~~~~~l~~~--~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~ 167 (199)
T 3vaa_A 90 EVAEFENVVISTGGGAPCFYDNMEFMNRT--GKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPF 167 (199)
T ss_dssp HHTTCSSEEEECCTTGGGSTTHHHHHHHH--SEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCcEEECCCcEEccHHHHHHHHcC--CEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHH
Confidence 444556789987653 34445566554 489999999999999998 4543332 1 23456666666666
Q ss_pred CCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 174 DPLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 174 ~~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
| .. ++++|+++ .++++++++|.+.+
T Consensus 168 y--~~-ad~~Idt~~~s~ee~~~~I~~~l 193 (199)
T 3vaa_A 168 Y--TQ-AQYIFNADELEDRWQIESSVQRL 193 (199)
T ss_dssp H--TT-SSEEEECCCCSSHHHHHHHHHHH
T ss_pred H--hh-CCEEEECCCCCHHHHHHHHHHHH
Confidence 5 33 78999998 69999999887654
No 12
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.69 E-value=3e-18 Score=160.05 Aligned_cols=183 Identities=16% Similarity=0.178 Sum_probs=113.6
Q ss_pred ccccccc-eeee-ccCCccceeeeeecccCCCCCCCCC---CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc
Q psy16778 2 AVSNFGN-WRYW-GMWPPQYVVTLIMTTTLSPSGEGSP---STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS 76 (433)
Q Consensus 2 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~ 76 (433)
+++++++ ++.| +. ...+.++++++.+ +.+|+|+|+|||||||+++.|++.+|+.++|+|.+.+..
T Consensus 17 ~l~~~~~~~~~~~~~----------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE----------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA 86 (250)
T ss_dssp -------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred ceEEcceeeEEecCc----------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence 4788899 9999 43 2356677788888 999999999999999999999999999999999886432
Q ss_pred cccccccCCCCCCcCChhHHHHHHH-HHHHhhhCCCcEEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINR-IIHQLNVDNLTGVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK 152 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~ 152 (433)
. .+......|+ ..++..++..+. .+..+.....+.||++++ .....++.++. ..+|||++|++++.+|+.+
T Consensus 87 ~-~g~~i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~---~~vV~L~a~~e~l~~Rl~~ 161 (250)
T 3nwj_A 87 M-KGTSVAEIFE-HFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHK---GISIWLDVPLEALAHRIAA 161 (250)
T ss_dssp S-TTSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTT---SEEEEEECCHHHHHHHHHC
T ss_pred h-cCccHHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHhC---CcEEEEECCHHHHHHHHhh
Confidence 1 0111111111 224455555555 344444432467777664 34556666754 3899999999999999975
Q ss_pred hh--CCCCC------------HHhHHHHHhhccCCCCCCCCCeEEE------------ccC-CCHHHHHHHHhcCCC
Q psy16778 153 RA--EHFMP------------ADLLESQFQTLEEPDPLVEPDVRTV------------SVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 153 R~--~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~I------------d~~-~~~ee~~~~i~~~l~ 202 (433)
+. .++.. .+.+...+..+++.|. . ++++| |++ .+++++++.|...+.
T Consensus 162 ~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~--~-ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~ 235 (250)
T 3nwj_A 162 VGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYT--K-ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ 235 (250)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHT--T-SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHh--h-CCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence 32 22221 2346666777776653 3 66777 887 999999999876653
No 13
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.67 E-value=5.3e-17 Score=144.64 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
++.+|+|+|++||||||+++.|++++|+.++|+|.+.... .|..+.+ ..++..++..+..+...+.....+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKR------TGADIAWIFEMEGEAGFRRREREMIEALCKLDNI 77 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH------HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH------cCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCc
Confidence 3578999999999999999999999999999999986431 1222111 112344444444433333333456
Q ss_pred EEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH--HHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEE
Q psy16778 114 VLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRL--QKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRT 183 (433)
Q Consensus 114 Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl--~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~ 183 (433)
||++++ .....++.+.+.+ .+|||++|++++.+|+ ..+..++.. .+.+...+..+.+.| +..++++
T Consensus 78 vi~~gg~~~~~~~~~~~l~~~~--~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y--~~~ad~~ 153 (185)
T 3trf_A 78 ILATGGGVVLDEKNRQQISETG--VVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLY--QAMADLV 153 (185)
T ss_dssp EEECCTTGGGSHHHHHHHHHHE--EEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHH--HHHCSEE
T ss_pred EEecCCceecCHHHHHHHHhCC--cEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hhcCCEE
Confidence 777654 5566777787763 8999999999999999 544333321 234566666665554 3336799
Q ss_pred EccC-CCHHHHHHHHhcCCCCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMPPTR 204 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l~~~ 204 (433)
|+++ .+++++++.|.+.+...
T Consensus 154 Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 154 YPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp EECTTCCHHHHHHHHHHHSCC-
T ss_pred EECCCCCHHHHHHHHHHHHHHH
Confidence 9998 69999999999888663
No 14
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.67 E-value=2.3e-16 Score=142.66 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=111.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCe--EEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVK--FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~--~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
+...+|.+|+|+|+|||||||+++.|++.+ |.. ++++|++... +..+..+..+....++..+..+.....
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-----LNRDLSFKAEDRAENIRRVGEVAKLFA 94 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-----TTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-----hhcccCcChHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999998 776 9999987532 122333443334445555556666666
Q ss_pred hCCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCC
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVE 178 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (433)
..+..+|+++....+.+++.+++... +++|||++|++++.+|+ ..|.++......+. ..++++ .
T Consensus 95 ~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~---~~~~~~----~ 167 (200)
T 3uie_A 95 DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGID---DPYEPP----L 167 (200)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTT---BCCCCC----S
T ss_pred hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCC---CcCcCC----C
Confidence 67777888888777888888887543 67899999999999997 44544333222111 112222 2
Q ss_pred CCeEEEccC--CCHHHHHHHHhcCCC
Q psy16778 179 PDVRTVSVN--EPLEGIVSKSAIMPP 202 (433)
Q Consensus 179 ~~~~~Id~~--~~~ee~~~~i~~~l~ 202 (433)
.++++||++ .+++++++.|.+.+.
T Consensus 168 ~~~~~idt~~~~~~~e~v~~i~~~l~ 193 (200)
T 3uie_A 168 NCEISLGREGGTSPIEMAEKVVGYLD 193 (200)
T ss_dssp SCSEEECCSSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 377999997 499999999877653
No 15
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.62 E-value=1.1e-14 Score=128.65 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=99.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCCCcccccccc--ccCCCCCCc---CChhHHHHH----HHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI--DGDHLHPQSNIDKM--SAKQPLNDE---DRRPWLNNI----NRIIHQ 105 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~----~~~~~~ 105 (433)
++++|+|+|+|||||||+++.|+++++..++ +.|.++........ ..+..+.+. .....++.. ...+..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 4679999999999999999999999987665 47765421111000 011111111 112223322 233455
Q ss_pred hhhCCCcEEEEcCcc-c----HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCC
Q psy16778 106 LNVDNLTGVLVCSAL-R----RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPD 180 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~-~----~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (433)
+...+.++|+++... . +.+++.+.... ..+|||++|.+++.+|+.+|..++.. ....+++..+.+ . .+
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~e~l~~R~~~r~~~~~~--~~~~~~~~~~~~---~-~~ 154 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLD-VLWVGVRCDGAVAEGRETARGDRVAG--MAAKQAYVVHEG---V-EY 154 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCC-EEEEEEECCHHHHHHHHHHTSSSCTT--HHHHHTTGGGTT---C-CC
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCCc-EEEEEEECCHHHHHHHHHhhCCcccc--hhhhhchhhccC---C-CC
Confidence 566777788888653 1 24455553321 57899999999999999998754433 223334333332 1 27
Q ss_pred eEEEccC-CCHHHHHHHHhcCCC
Q psy16778 181 VRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 181 ~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
+++|+++ .+++++++.|...+.
T Consensus 155 d~~idt~~~~~~~~~~~I~~~l~ 177 (178)
T 1qhx_A 155 DVEVDTTHKESIECAWAIAAHVV 177 (178)
T ss_dssp SEEEETTSSCHHHHHHHHHTTCC
T ss_pred cEEEECCCCCHHHHHHHHHHHhc
Confidence 7999998 799999999988763
No 16
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.60 E-value=4.8e-16 Score=138.35 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=102.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHH-HHHHHhhhCCCcE
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNIN-RIIHQLNVDNLTG 113 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~ 113 (433)
+++|+|+|++||||||+++.|++++|++++|.|.+..... |....+ ..+...++..+ ..+..+.... .+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 74 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSIADIFATDGEQEFRRIEEDVVRAALADH-DG 74 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC-CS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc------CCCHHHHHHHhChHHHHHHHHHHHHHHHhcC-Ce
Confidence 4679999999999999999999999999999999864321 211110 11223333332 2333333333 45
Q ss_pred EEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-C----HHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778 114 VLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-P----ADLLESQFQTLEEPDPLVEPDVRTVS 185 (433)
Q Consensus 114 Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~Id 185 (433)
|+.+++ ..+..++.+. . ..+|||++|++++.+|+.+|.+++. . .+.+..++..+.+.+ .+.++++||
T Consensus 75 vi~~g~~~v~~~~~~~~l~-~--~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~--~~~~~~~Id 149 (184)
T 2iyv_A 75 VLSLGGGAVTSPGVRAALA-G--HTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLY--RRVATMRVD 149 (184)
T ss_dssp EEECCTTGGGSHHHHHHHT-T--SCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHH--HHHCSEEEE
T ss_pred EEecCCcEEcCHHHHHHHc-C--CeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHH--hccCCEEEE
Confidence 665543 3345565554 2 3799999999999999988854332 1 234555554444332 223679999
Q ss_pred cC-CCHHHHHHHHhcCCCCCC
Q psy16778 186 VN-EPLEGIVSKSAIMPPTRA 205 (433)
Q Consensus 186 ~~-~~~ee~~~~i~~~l~~~~ 205 (433)
++ .+++++.+.|.+.+....
T Consensus 150 t~~~s~ee~~~~I~~~l~~~~ 170 (184)
T 2iyv_A 150 TNRRNPGAVVRHILSRLQVPS 170 (184)
T ss_dssp CSSSCHHHHHHHHHTTSCCCC
T ss_pred CCCCCHHHHHHHHHHHHhhcC
Confidence 99 899999999999887644
No 17
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.59 E-value=4.7e-15 Score=130.03 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEc-
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVC- 117 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~- 117 (433)
++|+|+|++||||||+++.|++++|+.+++.|.+..... .....+. .. ..+..+..++.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~-------------~~~~~~~----~~-~~l~~~~~vi~dr~ 63 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS-------------GNEKLFE----HF-NKLADEDNVIIDRF 63 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT-------------CHHHHHH----HH-HHHTTCCSEEEESC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh-------------HHHHHHH----HH-HHHHhCCCeEEeee
Confidence 489999999999999999999999999999998753211 0011111 11 1233455566552
Q ss_pred --------------CcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCe
Q psy16778 118 --------------SALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDV 181 (433)
Q Consensus 118 --------------~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 181 (433)
+.....++..+.... . ..+|||++|++++.+|+.+|+......+.++...+.++++......++
T Consensus 64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (173)
T 3kb2_A 64 VYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHT 143 (173)
T ss_dssp HHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCE
T ss_pred ecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCE
Confidence 223455665555431 2 689999999999999999985443443344433333332211112478
Q ss_pred EEEccC-CCHHHHHHHHhcCCCC
Q psy16778 182 RTVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 182 ~~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
++||++ .+++++.++|.+.+..
T Consensus 144 ~~id~~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 144 YSWDTGQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp EEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhC
Confidence 999998 6999999998876654
No 18
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.59 E-value=1.6e-16 Score=139.80 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=96.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
+++++|+|+|+|||||||+++.|++.+|.+++++|.+..... ....+..++. .+...++..+..+...+....++++
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~-~g~~~~~~~~~~~l~~l~~~~~~v~ 78 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL-EGEEGFRDREEKVINELTEKQGIVL 78 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH-HHHHHHHHHHHHHHHHHHTSSSEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH-HhHHHHHHHHHHHHHHHHhCCCeEE
Confidence 456799999999999999999999999999999998753211 1011111111 1112222222222222333446777
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----C-HHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----P-ADLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~-~~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
.+++ ..+..++.++... .++||+++++++.+|+.+|..++. . .+.+..++..+++.| .+.++++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~--~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~--~~~a~~~id~ 154 (173)
T 1kag_A 79 ATGGGSVKSRETRNRLSARG--VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLY--EEIADVTIRT 154 (173)
T ss_dssp ECCTTGGGSHHHHHHHHHHS--EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHH--HHHCSEEC--
T ss_pred ECCCeEEecHHHHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHH--HhhCCEEEEC
Confidence 6532 3455667776654 899999999999999988754332 1 456666666655543 3346899999
Q ss_pred C-CCHHHHHHHHhcCC
Q psy16778 187 N-EPLEGIVSKSAIMP 201 (433)
Q Consensus 187 ~-~~~ee~~~~i~~~l 201 (433)
+ .+++++.++|.+.+
T Consensus 155 ~~~~~~~~~~~i~~~l 170 (173)
T 1kag_A 155 DDQSAKVVANQIIHML 170 (173)
T ss_dssp ---CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8 89999999987654
No 19
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.58 E-value=5.7e-16 Score=135.80 Aligned_cols=151 Identities=16% Similarity=0.211 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHH-HHHhhhCCCcE-
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRI-IHQLNVDNLTG- 113 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~- 113 (433)
.+|+|+|++||||||+++.|++++|++++|+|.+..... |....+ ..++..++..+.. +..+. +..++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~-~~~~~~ 80 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELK-TLKTPH 80 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHH-TCSSCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHH-hcCCCE
Confidence 689999999999999999999999999999998864321 221111 1233444443333 33333 33356
Q ss_pred EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh--CCCC-C-HHhHHHHHhhccCCCCCCCCCeEEEccCCC
Q psy16778 114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA--EHFM-P-ADLLESQFQTLEEPDPLVEPDVRTVSVNEP 189 (433)
Q Consensus 114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~--~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~ 189 (433)
|+++++..... +.+... ..+|||++|++++.+|+.+|. +++. . .+.+...+..+.+.+ .+.++++|+++.+
T Consensus 81 Vi~~g~g~~~~-~~l~~~--~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~--~~~a~~~Id~~~~ 155 (168)
T 1zuh_A 81 VISTGGGIVMH-ENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALY--EKNASFIIDARGG 155 (168)
T ss_dssp EEECCGGGGGC-GGGTTS--EEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHH--HHTCSEEEEGGGC
T ss_pred EEECCCCEech-hHHhcC--CEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHH--HHHCCEEEECCCC
Confidence 77654322111 113222 589999999999999998772 2221 1 334444444443332 2336799999889
Q ss_pred HHHHHHHHhcCC
Q psy16778 190 LEGIVSKSAIMP 201 (433)
Q Consensus 190 ~ee~~~~i~~~l 201 (433)
++++.++|.+.+
T Consensus 156 ~e~~~~~I~~~l 167 (168)
T 1zuh_A 156 LNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 20
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.58 E-value=2.3e-14 Score=134.87 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=110.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH---hCCeEE--eCCCCCccccccccccCCCCCCcCChhHHHH-HHHHHHHhhhC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR---LGVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-INRIIHQLNVD 109 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~---lg~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 109 (433)
.++++|+|+|+|||||||+++.|++. +|+.++ +.|.+.... .+ +... .+..++. ....+...+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l------~~--~~~~-~e~~~~~~~~~~i~~~l~~ 72 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF------PV--WKEK-YEEFIKKSTYRLIDSALKN 72 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS------SS--CCGG-GHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH------hh--hhHH-HHHHHHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 688877 888764321 11 2222 2333333 23445555555
Q ss_pred CCcEEEEcCcccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC-CC-CCCeE
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP-LV-EPDVR 182 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~ 182 (433)
..+|+++......+++.+... .. ..+|||++|++++.+|+.+|+ ++.+.+.+...+..++++.. ++ +..++
T Consensus 73 -~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~-~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 150 (260)
T 3a4m_A 73 -YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG-EKIPNEVIKKMYEKFDEPGKKYKWDEPFL 150 (260)
T ss_dssp -SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT-CSSCHHHHHHHHHHCCCTTSSCGGGCCSE
T ss_pred -CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCccccCCCCCCEE
Confidence 678888776666665555432 22 689999999999999999886 44566777777777776642 11 34679
Q ss_pred EEccCC--CHHHHHHHHhcCCCC
Q psy16778 183 TVSVNE--PLEGIVSKSAIMPPT 203 (433)
Q Consensus 183 ~Id~~~--~~ee~~~~i~~~l~~ 203 (433)
+||++. +++++.+.|...+..
T Consensus 151 ~Id~~~~~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 151 IIDTTKDIDFNEIAKKLIEKSKE 173 (260)
T ss_dssp EEETTSCCCHHHHHHHHHHHHTS
T ss_pred EEeCCCCCCHHHHHHHHHhcccC
Confidence 999984 899999998877655
No 21
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.57 E-value=4.5e-15 Score=129.81 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
|+|+|+|++||||||+++.|++.+|++++++|.+.... .|..+.. ..+...++.++..+...+.....+||
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi 74 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKR------EGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVI 74 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH------HTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHH------cCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEE
Confidence 57999999999999999999999999999999885431 1211110 12334444444444344443457888
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHHHHHhhccCCCCCCCCCeEEEccC-C
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM---PADLLESQFQTLEEPDPLVEPDVRTVSVN-E 188 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~ 188 (433)
+++. ..+.+++.+.+. ..+|||++|++++.+|+.+|..++. ..+.+...+..+.+.+ .+ ++++| ++ .
T Consensus 75 ~~g~~~~~~~~~~~~l~~~--~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~--~~-~~~~i-~~~~ 148 (168)
T 2pt5_A 75 STGGGLGANEEALNFMKSR--GTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIY--SK-ADIKV-KGEK 148 (168)
T ss_dssp ECCHHHHTCHHHHHHHHTT--SEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHH--TT-SSEEE-ECSS
T ss_pred ECCCCEeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHH--Hh-CCEEE-CCCC
Confidence 7543 455666777654 4899999999999999988643322 1334455554443333 33 56777 66 8
Q ss_pred CHHHHHHHHhcCCC
Q psy16778 189 PLEGIVSKSAIMPP 202 (433)
Q Consensus 189 ~~ee~~~~i~~~l~ 202 (433)
+++++.++|.+.+.
T Consensus 149 ~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 149 PPEEVVKEILLSLE 162 (168)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999877654
No 22
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.57 E-value=4.1e-16 Score=137.70 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
++|+|+|+|||||||+++.|++.+|++++|+|.+.+.. .|..... ..++..++..+..+...+.....+||
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi 78 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK------FNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACI 78 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH------HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH------cCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEE
Confidence 37999999999999999999999999999999886431 1211111 12234444444433333444456788
Q ss_pred EcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh--CCCCC--HHhHHHHHhhccCCCCCCCCCeEEEccC-CCH
Q psy16778 116 VCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA--EHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVN-EPL 190 (433)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~--~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~ 190 (433)
++++.....+. +++. ..+|||++|++++.+|+.+|. .++.. .+.+...+..+.+.| .+.++++||++ .++
T Consensus 79 ~~g~~~~~~~~-l~~~--~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y--~~~~~~~Idt~~~~~ 153 (175)
T 1via_A 79 ATGGGFVNVSN-LEKA--GFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY--EQKANFILNIENKNI 153 (175)
T ss_dssp ECCTTGGGSTT-GGGG--CEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH--HHHCSEEEECTTCCH
T ss_pred ECCCCEehhhH-HhcC--CEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHH--HhcCCEEEECCCCCH
Confidence 86542211122 4444 489999999999999998773 33322 445666666555443 22257999999 899
Q ss_pred HHHHHHHhcCCCC
Q psy16778 191 EGIVSKSAIMPPT 203 (433)
Q Consensus 191 ee~~~~i~~~l~~ 203 (433)
+++++.|.+.+..
T Consensus 154 eev~~~I~~~l~~ 166 (175)
T 1via_A 154 DELLSEIKKVIKE 166 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 23
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.56 E-value=3.8e-15 Score=130.88 Aligned_cols=153 Identities=21% Similarity=0.255 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
++|+|+|++||||||+++.|++.+|+++++.|.+.... .|..... ..+...++.++..+...+. +.++||
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi 75 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT------SGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVV 75 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH------HCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH------hCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEE
Confidence 57999999999999999999999999999999875431 1221111 1122333333333333333 446788
Q ss_pred EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH--Hh-hCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778 116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ--KR-AEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTV 184 (433)
Q Consensus 116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~--~R-~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~I 184 (433)
++++ ..+..++.+.+. ..+|||++|++++.+|+. +| ..++.. ...+..++....+.+ .. ++++|
T Consensus 76 ~~g~~~~~~~~~~~~l~~~--~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~I 150 (173)
T 1e6c_A 76 ATGGGMVLLEQNRQFMRAH--GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALY--QD-VAHYV 150 (173)
T ss_dssp ECCTTGGGSHHHHHHHHHH--SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHH--HH-HCSEE
T ss_pred ECCCcEEeCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHH--Hh-CcEEE
Confidence 7653 445666666654 389999999999999998 77 323322 122444444443332 22 57899
Q ss_pred ccC-CCHHHHHHHHhcCCCC
Q psy16778 185 SVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 185 d~~-~~~ee~~~~i~~~l~~ 203 (433)
|++ .+++++.+.|.+.+..
T Consensus 151 d~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 151 VDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp EETTSCHHHHHHHHHHHTTC
T ss_pred ECCCCCHHHHHHHHHHHhcc
Confidence 999 8999999999887654
No 24
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.55 E-value=7.8e-15 Score=131.15 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=94.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHH--------HHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN--------INRIIHQL 106 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 106 (433)
++++++|+|+|+|||||||+++.|++.+|+.+++.|.+..... . +.... ...+++. +...+...
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~--~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMF--D---GLGWS---DREWSRRVGATAIMMLYHTAATI 73 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--H---HHCCC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHH--H---hcCcc---chHHHHHhhHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998753211 0 11111 1122222 22334445
Q ss_pred hhCCCcEEEEcCcccHHH-HHH--HHhcC-C-eEEEEEEcCHHHHHHHHHHhhC---CCCC---HHhHH-----HHHhhc
Q psy16778 107 NVDNLTGVLVCSALRRNY-RDI--IRNNN-R-VVFIYLKAEFGVILSRLQKRAE---HFMP---ADLLE-----SQFQTL 170 (433)
Q Consensus 107 ~~~~~~~Vi~~~~~~~~~-~~~--l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~---~~~~---~~~l~-----~~~~~~ 170 (433)
+..|.++|++........ +.+ +.... . ..+|||++|++++.+|+.+|.. ++.. .+.+. ..++.+
T Consensus 74 l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 153 (193)
T 2rhm_A 74 LQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDI 153 (193)
T ss_dssp HHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCC
T ss_pred HhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcC
Confidence 567778888876522211 122 33332 2 6899999999999999988863 2211 11111 222223
Q ss_pred cCCCCCCCCCeEEEccCCC----HHHHHHHHhcC
Q psy16778 171 EEPDPLVEPDVRTVSVNEP----LEGIVSKSAIM 200 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~----~ee~~~~i~~~ 200 (433)
++++ .+.++++||++.. .+++.+.|...
T Consensus 154 ~~~~--~~~~~~~Idt~~~~~~~~~~i~~~i~~~ 185 (193)
T 2rhm_A 154 PPLP--LGGPLLTVDTTFPEQIDMNAIVQWVRQH 185 (193)
T ss_dssp CCCC--CCSCEEEEECSSGGGCCHHHHHHHHHHH
T ss_pred CCcc--CCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence 3332 2357899999853 45555555443
No 25
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.54 E-value=5.5e-15 Score=134.79 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=109.1
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc----------ccCCCCCCcCChhHHHHHH
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM----------SAKQPLNDEDRRPWLNNIN 100 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 100 (433)
.+...+++++|+|+|+|||||||+++.|++++|+++|+++++.+....... ..|.... .......+.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVp---de~~~~lv~ 98 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP---LEVVLALLK 98 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCC---HHHHHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCC---HHHHHHHHH
Confidence 344567889999999999999999999999999999999988754211111 1111111 011223334
Q ss_pred HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCC----CHHhHHHHHhhccC--
Q psy16778 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFM----PADLLESQFQTLEE-- 172 (433)
Q Consensus 101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~l~~~~~~~~~-- 172 (433)
+.+........++|+++.+.+....+.+.+... ..+|+|+++.+++.+|+..|..... ..+.+..+++.|.+
T Consensus 99 ~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t 178 (217)
T 3umf_A 99 EAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT 178 (217)
T ss_dssp HHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 444444445567899988877777776765433 6899999999999999988853221 13344444433322
Q ss_pred -----CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 173 -----PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 173 -----~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.|. .....+.||.+.+++++.++|.+.+.+
T Consensus 179 ~pl~~~Y~-~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 179 KPVIEHYK-QQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHHH-TTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 111 223457888889999999998876644
No 26
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.54 E-value=5.5e-14 Score=124.55 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=95.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE-eCCCCCccccccc-cccC-CCCCCcCChhHHHHHHHHHHHhhhC-CC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDK-MSAK-QPLNDEDRRPWLNNINRIIHQLNVD-NL 111 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i-d~D~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (433)
.++++|+|+|++||||||+++.|++.+|..++ +.+..-. .... ...+ ..|.. ...+.+.+.+.+...+.. +.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~--~i~~~~~~g~~~~~~--~~~~~~~~~~~i~~~l~~~g~ 78 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQ--ALRKLTPGFSGDPQE--HPMWIPLMLDALQYASREAAG 78 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHH--HHHHTSTTCCSCGGG--STTHHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHH--HHHHhCccccchhhh--hHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999988 4221100 0000 0001 01111 122223334445555544 55
Q ss_pred cEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 112 TGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 112 ~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
.+|++.+.... ..++.+++.+. ...|||++|++++.+|+.+|..++...+.+...+..++.+ . .+. +||+
T Consensus 79 ~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~---~~~-~Id~ 153 (183)
T 2vli_A 79 PLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-Q---FQT-HIDT 153 (183)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-G---GCS-EEEC
T ss_pred cEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-c---cce-EeeC
Confidence 67777655333 34455655432 4569999999999999998865444455666666666554 2 244 8999
Q ss_pred C-CCHHHHHHHHhcCCCCCC
Q psy16778 187 N-EPLEGIVSKSAIMPPTRA 205 (433)
Q Consensus 187 ~-~~~ee~~~~i~~~l~~~~ 205 (433)
+ .+++++.++|.+.+....
T Consensus 154 ~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 154 AGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp TTCCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 8 899999999988876543
No 27
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.53 E-value=7.5e-15 Score=129.67 Aligned_cols=158 Identities=14% Similarity=0.129 Sum_probs=92.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HhCCeEEeCCCCCccccccccccC--CCCCCcCChhHHHHHHHHHHHhh---hCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLAT-RLGVKFIDGDHLHPQSNIDKMSAK--QPLNDEDRRPWLNNINRIIHQLN---VDNL 111 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~-~lg~~~id~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 111 (433)
+.+|+|+|+|||||||+++.|++ .+|+.++++|.+..... ....+ ..+...........+...+...+ ..+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 79 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM--AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK 79 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT--TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh--CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCC
Confidence 57899999999999999999999 68999999987653211 10011 11221111112223445566666 6777
Q ss_pred cEEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 112 TGVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
.+|+++......+++.+. ..+. ..+|||++|++++.+|+.+|..+..+.+.+..++..++++.. . ..+++|.
T Consensus 80 ~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~-~--~~~~id~ 156 (181)
T 1ly1_A 80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG-L--PVYNGTP 156 (181)
T ss_dssp EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHT-C--CCC----
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccCC-C--CccccCC
Confidence 888887776555554443 2222 479999999999999999987555666777777777666532 1 2345665
Q ss_pred CCCHHHHHHHHhcCC
Q psy16778 187 NEPLEGIVSKSAIMP 201 (433)
Q Consensus 187 ~~~~ee~~~~i~~~l 201 (433)
+. ++++...+...+
T Consensus 157 ~~-~~~v~~~i~~~l 170 (181)
T 1ly1_A 157 GK-PKAVIFDVDGTL 170 (181)
T ss_dssp ---------------
T ss_pred CC-Cceeeehhhhhh
Confidence 54 266666565544
No 28
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.51 E-value=4.3e-14 Score=123.87 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHH---------HHHHHHHHhh--
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---------NINRIIHQLN-- 107 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-- 107 (433)
++|+|+|++||||||+++.| +.+|+.+++.|++....... .+..... ...... .....+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSI---EAKPGER--LMDFAKRLREIYGDGVVARLCVEELGT 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHH---HC---CC--HHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHh---cCCChhH--HHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 68999999999999999999 88999999988776432111 1111110 001111 1222333334
Q ss_pred hCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhh--ccCCCCCCCCCe
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQT--LEEPDPLVEPDV 181 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~--~~~~~~~~~~~~ 181 (433)
..+..+|+++. .....++.+.+... +.+|||++|++++.+|+.+|+... ...+.+...+.. ......+...++
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad 154 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMAD 154 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCS
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCC
Confidence 45556777665 66667677766532 689999999999999999986421 223333332211 111000122377
Q ss_pred EEEccCCCHHHHHHHHhcCC
Q psy16778 182 RTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 182 ~~Id~~~~~ee~~~~i~~~l 201 (433)
++|+++.+++++.++|.+.+
T Consensus 155 ~vId~~~~~~~~~~~i~~~l 174 (179)
T 3lw7_A 155 YIITNDSNYEEFKRRCEEVT 174 (179)
T ss_dssp EEEECCSCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99998899999998887643
No 29
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.50 E-value=5e-14 Score=127.13 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=99.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN--- 107 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--- 107 (433)
...++++|+|+|++||||||+++.|++.+|++++++|++.+.........+..+.. .....+.......+...+
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 45677899999999999999999999999999999988753310000000000000 000000011112222211
Q ss_pred hCCCcEEEEcCcccHHHH----HHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc----CCCCCC
Q psy16778 108 VDNLTGVLVCSALRRNYR----DIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLE----EPDPLV 177 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~----~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~----~~~~~~ 177 (433)
..+.++|+++........ +.+.+.+. ..+|||++|++++.+|+.+|+......+.+...+..+. +...+.
T Consensus 96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~ 175 (201)
T 2cdn_A 96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY 175 (201)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHT
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHh
Confidence 235578888755443333 33443222 58999999999999999998532223444433332222 111001
Q ss_pred CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 178 EPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 178 ~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
....++||++.+++++.++|.+.+
T Consensus 176 ~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 176 RDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred cCcEEEEeCCCCHHHHHHHHHHHH
Confidence 336789999899999999987765
No 30
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.50 E-value=7e-15 Score=133.31 Aligned_cols=164 Identities=12% Similarity=0.161 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
|+|+|+|+|||||+|+++.|++++|++||+++++.+.........|...+. .+...--+.+..++...+.+..++|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il 80 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF 80 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence 689999999999999999999999999999998875422111111100000 00000012334445555556668999
Q ss_pred EcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhhCCC------------------------CCHHhHHH
Q psy16778 116 VCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRAEHF------------------------MPADLLES 165 (433)
Q Consensus 116 ~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~------------------------~~~~~l~~ 165 (433)
|+.+.+....+.|. +.. . ..|++|++|.+++.+|+..|.-.+ ...+.++.
T Consensus 81 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~ 160 (206)
T 3sr0_A 81 DGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKK 160 (206)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHH
T ss_pred cCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHH
Confidence 98887766655553 222 2 689999999999999999885211 12344555
Q ss_pred HHhhccCCCC-----C-CCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 166 QFQTLEEPDP-----L-VEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 166 ~~~~~~~~~~-----~-~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+++.|++-.. | +..-...||.+.+++++.++|.+.+.
T Consensus 161 Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 161 RLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp HHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 5444432110 1 22245778888999999999987654
No 31
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=99.50 E-value=6.5e-16 Score=154.14 Aligned_cols=182 Identities=11% Similarity=0.086 Sum_probs=126.6
Q ss_pred cccccchhh-hhHHhhhcceeecc-cccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEE
Q psy16778 209 YSDFVCVDD-FEQFALKVLRIRPR-VMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYIL 286 (433)
Q Consensus 209 ~~d~~~~~~-~~~~a~~~~~l~pr-~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~ 286 (433)
|.+....++ .|..+|++|.|+|+ ++++++++|++|+++|.+++.||++||++ ++.|| .+++++.++|.++++
T Consensus 23 ~~~~~~~~~~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~a~a~a~~G~~gvl 96 (393)
T 2qr6_A 23 HVEIGIGREARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EFVIEMGKQGGLGVI 96 (393)
T ss_dssp EEEEETTEEEECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HHHHHHHHTTSBCEE
T ss_pred HHhcccccccccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HHHHHHHHcCCcEEE
Confidence 333333333 35678999999998 99999999999999999999999999998 67777 589999999999999
Q ss_pred ec--------CCCCCHHHHHHhCCC------CcceEEEeecc-CHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccc
Q psy16778 287 ST--------ISTTSIEELAEKTPQ------TTKWFQLYIYR-DREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 351 (433)
Q Consensus 287 s~--------~s~~~~eeva~~~~~------~~~w~qly~~~-d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~ 351 (433)
++ .++.++|++++.... .+.|+|+|..+ |++.+.+++++++++|++.++.. .+.+..+.+
T Consensus 97 ~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~~v-----~~~~~~e~a 171 (393)
T 2qr6_A 97 NAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRV-----SPQNVREIA 171 (393)
T ss_dssp ETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEEEE-----CTTTHHHHH
T ss_pred EecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEEEe-----CCccHHHHH
Confidence 98 556778888765321 45799999766 99999999999999999887721 122221111
Q ss_pred c-----ccC---C---C-------ccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 352 N-----KFN---M---P-------SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 352 ~-----~~~---~---~-------~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
. +.. + + +..+.++|..... ...+++..++..+.+.++++.++|+++|+|+
T Consensus 172 ~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~----~~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg 239 (393)
T 2qr6_A 172 PIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIG----SLDVPVIAGGVNDYTTALHMMRTGAVGIIVG 239 (393)
T ss_dssp HHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHH----HCSSCEEEECCCSHHHHHHHHTTTCSEEEES
T ss_pred HHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHH----hcCCCEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 1 000 0 0 0001222211100 0012233345677889999999999999994
No 32
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.49 E-value=5.2e-14 Score=125.38 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=93.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
.+...++++|+|+|++||||||+++.|++.++ +.++++|.+... +..+..+........+..+......+
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~~ 81 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT-----VSEGAGFTREERLRHLKRIAWIARLL 81 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT-----TTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH-----HhhccCCChhhHHHHHHHHHHHHHHH
Confidence 44566889999999999999999999999884 467888776322 11122232222222233332333333
Q ss_pred hhCCCcEEEEcCcccHHHH----HHHHhcCC-eEEEEEEcCHHHHHHHHHHhh---CCCCCHHhHHHHHhhccCCCCCCC
Q psy16778 107 NVDNLTGVLVCSALRRNYR----DIIRNNNR-VVFIYLKAEFGVILSRLQKRA---EHFMPADLLESQFQTLEEPDPLVE 178 (433)
Q Consensus 107 ~~~~~~~Vi~~~~~~~~~~----~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~~~~~ 178 (433)
...+..+|++........+ +.+..... +.+|||++|++++.+|+..+. ........+......++++ .
T Consensus 82 ~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~----~ 157 (186)
T 2yvu_A 82 ARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPP----E 157 (186)
T ss_dssp HTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCC----S
T ss_pred HhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCC----C
Confidence 4556555556554333333 33433222 689999999999999974321 0000000111111112221 2
Q ss_pred CCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 179 PDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 179 ~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
.++++||++ .+++++.+.|...+
T Consensus 158 ~~~~~Id~~~~~~~ev~~~I~~~l 181 (186)
T 2yvu_A 158 NPQLVLDTESNTIEHNVSYLYSLV 181 (186)
T ss_dssp SCSEEEETTTSCHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHHHH
Confidence 367999998 89999999887654
No 33
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.48 E-value=1.2e-13 Score=123.57 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
+.++++|+|+|++||||||+++.|++.+|+.+++.|++........ ...|.... .......+...+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~ 82 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP---LETVLDMLRDAMV 82 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCC---HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998754311000 00111110 1112233444555
Q ss_pred HhhhCCCcEEEEcCcccHHHHHHHHhc-CC-eEEEEEEcCHHHHHHHHHHhhCC---C-CCHHhHHHH----HhhccCC-
Q psy16778 105 QLNVDNLTGVLVCSALRRNYRDIIRNN-NR-VVFIYLKAEFGVILSRLQKRAEH---F-MPADLLESQ----FQTLEEP- 173 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~~~~~~~~~l~~~-~~-~~vv~L~~~~e~l~~Rl~~R~~~---~-~~~~~l~~~----~~~~~~~- 173 (433)
.....+..+|+++.+....+.+.+... .. ..+|||++|++++.+|+.+|+.. . ...+.+... +....+.
T Consensus 83 ~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (196)
T 2c95_A 83 AKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI 162 (196)
T ss_dssp HHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHH
T ss_pred hccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 555567788888755554454444332 12 68999999999999999988631 1 112222222 2221111
Q ss_pred --CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 174 --DPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 174 --~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+. .....++||++.+++++.++|.+.+
T Consensus 163 ~~~~-~~~~~~~Id~~~~~e~v~~~i~~~l 191 (196)
T 2c95_A 163 AFYE-KRGIVRKVNAEGSVDSVFSQVCTHL 191 (196)
T ss_dssp HHHH-HHTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHH-hcCcEEEEECCCCHHHHHHHHHHHH
Confidence 10 1112357888899999999887654
No 34
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.46 E-value=3.3e-13 Score=121.08 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=100.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------c---c-cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------D---K-MSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+++++|+|+|++||||||+++.|++++|+.+++.|++...... . . ...|.... .......+...+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~~ 86 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP---SGIVLELLKEAMVA 86 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC---HHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999987543210 0 0 00111111 11122233444444
Q ss_pred hhhCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHH----HHhhccC---
Q psy16778 106 LNVDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMP----ADLLES----QFQTLEE--- 172 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~----~~~~~~~--- 172 (433)
....+..+|+++.......++.+.+.. . ..+|||++|++++.+|+.+|...... .+.+.. ++....+
T Consensus 87 ~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 166 (199)
T 2bwj_A 87 SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIA 166 (199)
T ss_dssp HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444677788887665555555554422 2 58999999999999999998642111 112222 2222211
Q ss_pred CCCCCCCCe-EEEccCCCHHHHHHHHhcCC
Q psy16778 173 PDPLVEPDV-RTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 173 ~~~~~~~~~-~~Id~~~~~ee~~~~i~~~l 201 (433)
.+ .+.+. ++||++.+++++.++|.+.+
T Consensus 167 ~~--~~~~~~~~id~~~~~e~v~~~i~~~l 194 (199)
T 2bwj_A 167 YY--ETKTQLHKINAEGTPEDVFLQLCTAI 194 (199)
T ss_dssp HH--HHHSEEEEEETTSCHHHHHHHHHHHH
T ss_pred HH--HhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 11 11233 78888899999999887654
No 35
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.45 E-value=9e-13 Score=118.87 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=100.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc-cc----------cccCCCCCCcCChhHHHHHH
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-DK----------MSAKQPLNDEDRRPWLNNIN 100 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~ 100 (433)
.+...++++|+|+|++||||||+++.|++.+|+.+++.|++.+.... .. +..|... ........+.
T Consensus 9 ~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~---~~~~~~~~l~ 85 (203)
T 1ukz_A 9 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV---PQEITLALLR 85 (203)
T ss_dssp CSCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCC---CHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcC---CHHHHHHHHH
Confidence 34456678999999999999999999999999999999977532100 00 0011100 0011222344
Q ss_pred HHHHHhhhCC-CcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhC---CC-CCHHhHHHHHhhccC-
Q psy16778 101 RIIHQLNVDN-LTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAE---HF-MPADLLESQFQTLEE- 172 (433)
Q Consensus 101 ~~~~~~~~~~-~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~---~~-~~~~~l~~~~~~~~~- 172 (433)
+.+...+..| ..+|+++.+........+.+... ..+|||++|++++.+|+.+|.. .. ...+.+...+..+..
T Consensus 86 ~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~ 165 (203)
T 1ukz_A 86 NAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET 165 (203)
T ss_dssp HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHT
T ss_pred HHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4455555555 46777766544444444443222 6899999999999999988852 21 223333333222111
Q ss_pred ---C---CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 173 ---P---DPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 173 ---~---~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
. +. .....++|+++.+++++.++|.+.+
T Consensus 166 ~~~~~~~~~-~~~~vi~id~~~~~e~v~~~i~~~l 199 (203)
T 1ukz_A 166 SMPVIEYFE-TKSKVVRVRCDRSVEDVYKDVQDAI 199 (203)
T ss_dssp THHHHHHHH-TTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHHH
Confidence 0 00 1113456888899999999887643
No 36
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.45 E-value=1.2e-13 Score=123.42 Aligned_cols=160 Identities=12% Similarity=0.173 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc----------c-cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID----------K-MSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
++++|+|+|++||||||+++.|++.+|+++++.|++....... . +..|..... ......+...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~ 78 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV---EITISLLKREMDQ 78 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCH---HHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCH---HHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999875321100 0 001111110 0011111222222
Q ss_pred h---hhCCCcEEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhC---CCC-CHHhHHHHHh----h
Q psy16778 106 L---NVDNLTGVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAE---HFM-PADLLESQFQ----T 169 (433)
Q Consensus 106 ~---~~~~~~~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~---~~~-~~~~l~~~~~----~ 169 (433)
. ...+..+|+++........+.+.+ ... ..+|||++|++++.+|+.+|.. ++. ..+.+...+. .
T Consensus 79 ~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 79 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp HHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred hhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1 224567787866655443332222 111 5799999999999999988852 222 2333322222 2
Q ss_pred ccC---CCCCCCC-CeEEEccCCCHHHHHHHHhcCC
Q psy16778 170 LEE---PDPLVEP-DVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 170 ~~~---~~~~~~~-~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+ .| .+. ..++||++.+++++.++|.+.+
T Consensus 159 ~~~~~~~y--~~~~~~~~id~~~~~~~v~~~i~~~l 192 (196)
T 1tev_A 159 TKPIIDLY--EEMGKVKKIDASKSVDEVFDEVVQIF 192 (196)
T ss_dssp HHHHHHHH--HHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 111 11 112 3358999999999999887654
No 37
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.45 E-value=4.7e-14 Score=125.41 Aligned_cols=161 Identities=10% Similarity=0.102 Sum_probs=94.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC----CCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ----PLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.+|++|+|+|++||||||+++.|++.+|+.++++|++...........+. .+.. ........+...+...+.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-- 78 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-- 78 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC--
Confidence 46789999999999999999999999999999998775421000000000 0000 0000111222334444433
Q ss_pred cEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhh---CCC-CCHHhHHHHHhhcc-------CCC
Q psy16778 112 TGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRA---EHF-MPADLLESQFQTLE-------EPD 174 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~---~~~-~~~~~l~~~~~~~~-------~~~ 174 (433)
++|+++......... .+.+.+. ..+|||++|++++.+|+.+|. +++ ...+.+...+..+. +.+
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~ 158 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY 158 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 377776554433332 3443221 579999999999999999885 333 23333332222211 111
Q ss_pred CCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 175 PLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 175 ~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
. .....++||++.+++++.++|.+.
T Consensus 159 ~-~~~~~~~id~~~~~~~v~~~i~~~ 183 (186)
T 3cm0_A 159 E-ARGVLKRVDGLGTPDEVYARIRAA 183 (186)
T ss_dssp H-HTTCEEEEECCSCHHHHHHHHHHH
T ss_pred H-hcCcEEEEECCCCHHHHHHHHHHH
Confidence 0 111368899889999999988754
No 38
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=99.45 E-value=2.7e-14 Score=141.47 Aligned_cols=140 Identities=35% Similarity=0.506 Sum_probs=111.5
Q ss_pred CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc------------
Q psy16778 289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------ 349 (433)
Q Consensus 289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------ 349 (433)
.+..++|+.|+...+...|-|+....++|.+...++.+... .+..-++ ++.+.++|.+...
T Consensus 28 ~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~l 107 (392)
T 2nzl_A 28 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRM 107 (392)
T ss_dssp CSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred CCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccccc
Confidence 35668888888877778899999999999999888888655 5555544 2336667765431
Q ss_pred -----------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q psy16778 350 -----------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG 412 (433)
Q Consensus 350 -----------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g 412 (433)
.+..+++ ..+.++|++.+..++.+.|||||+++|+..+.++++||+++|+++|+||+|+|+.|
T Consensus 108 ~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g 187 (392)
T 2nzl_A 108 AHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLG 187 (392)
T ss_dssp TSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCC
T ss_pred ccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 1111111 13457999988766678899999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCCCCCC
Q psy16778 413 TRYADIRNKFNMPSHL 428 (433)
Q Consensus 413 ~r~~~~r~~~~~~~~~ 428 (433)
+|++|.|++|.+|+++
T Consensus 188 ~R~~d~r~~~~lp~~~ 203 (392)
T 2nzl_A 188 NRLDDVRNRFKLPPQL 203 (392)
T ss_dssp CCHHHHHHTCCCCTTC
T ss_pred chhHhHhhccCCcccc
Confidence 9999999999999877
No 39
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.45 E-value=1.1e-13 Score=126.48 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---hCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN---VDN 110 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~ 110 (433)
+++.|+|+|++||||||+++.|++.+|+.++++|++.+.........|..... .......+.+...+...+ ..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~ 83 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV 83 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence 45789999999999999999999999999999998764321000000100000 000000112222333322 236
Q ss_pred CcEEEEcCcccHHHHHH----HHhcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 111 LTGVLVCSALRRNYRDI----IRNNN-R-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~----l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.++|+++.+......+. +...+ . ..+|||+++++++.+|+..|.
T Consensus 84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 67888865544333333 32322 2 589999999999999999885
No 40
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.44 E-value=4.6e-13 Score=121.85 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=97.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
...+|++|+|+|++||||||+++.|++.++ +.++++|.+.... ..+..+.......+++.+...+...+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l-----~~~~~~~~~~r~~~~~~~~~~~~~~l 95 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL-----NKDLGFSEADRNENIRRIAEVAKLFA 95 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT-----TTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh-----ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999886 7888887765321 11222332333444555555555666
Q ss_pred hCCCcEEEEcCcccHHHHHHHHhc----------CC-eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhc
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRNN----------NR-VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTL 170 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~~----------~~-~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~ 170 (433)
..+..+|+++......+++.+.+. .. +.+|||++|++++.+|+ ..|.+.. ..+..+
T Consensus 96 ~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~-------~~~~~~ 168 (211)
T 1m7g_A 96 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVI-------KEFTGI 168 (211)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSS-------SSCBTT
T ss_pred HCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcch-------hhhhhh
Confidence 677777777443223444444431 11 68999999999999994 1111110 001111
Q ss_pred cCCCCCCCCCeEEEccCC-CHHHHHHHHhcCCC
Q psy16778 171 EEPDPLVEPDVRTVSVNE-PLEGIVSKSAIMPP 202 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~-~~ee~~~~i~~~l~ 202 (433)
...|...+.++++||++. +++++.+.|.+.+.
T Consensus 169 ~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~ 201 (211)
T 1m7g_A 169 SAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD 201 (211)
T ss_dssp TBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 112210123569999995 99999999877653
No 41
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.43 E-value=1e-13 Score=123.62 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhh--C
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNV--D 109 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~ 109 (433)
+++++|+|+|++||||||+++.|++.+|+.+++.|++...........+.. +.. ............+..... .
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~ 82 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQ 82 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTST
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcC
Confidence 356799999999999999999999999999999988753311000000000 000 000000111122222221 4
Q ss_pred CCcEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcCHHHHHHHHHHhhCC---CC-CHHhHHHHHhh----ccCCCC-
Q psy16778 110 NLTGVLVCSALRRNYRDII----RNNNR-VVFIYLKAEFGVILSRLQKRAEH---FM-PADLLESQFQT----LEEPDP- 175 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~---~~-~~~~l~~~~~~----~~~~~~- 175 (433)
+..+|+++..........+ ..... ..+|||++|++++.+|+.+|... .. ..+.+...+.. +.+.+.
T Consensus 83 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 5678888765544443333 22112 57999999999999999988631 11 12333222221 111100
Q ss_pred CCCC-CeEEEccCCCHHHHHHHHhcCC
Q psy16778 176 LVEP-DVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 176 ~~~~-~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+... ..++||++.+++++.++|.+.+
T Consensus 163 ~~~~~~~~~id~~~~~~~~~~~i~~~l 189 (194)
T 1qf9_A 163 YNKFDKVKIIPANRDVNEVYNDVENLF 189 (194)
T ss_dssp HHHTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred HHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 0111 2378888899999999887654
No 42
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=99.43 E-value=1.3e-13 Score=134.12 Aligned_cols=159 Identities=13% Similarity=0.017 Sum_probs=120.8
Q ss_pred HhhhcceeecccccCCC--CCC--ceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH
Q psy16778 221 FALKVLRIRPRVMRDLS--KRT--LVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE 296 (433)
Q Consensus 221 ~a~~~~~l~pr~l~~~~--~~d--~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee 296 (433)
.+|+++.|+||++.+++ ++| ++|+|+|.+++.||++||+ |+.+|..+|+|++++|.+++++.. .++|+
T Consensus 8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee 79 (361)
T 3r2g_A 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE 79 (361)
T ss_dssp CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence 47899999999999998 755 4559999999999999995 889999999999999999999964 78999
Q ss_pred HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhh
Q psy16778 297 LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWF 376 (433)
Q Consensus 297 va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~ 376 (433)
+++... ...|+|.|...+++.+.+.++++.++|+..| ++|++. |+... ....++.|.+..+
T Consensus 80 ~~~~i~-~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI--~id~a~-G~~~~---------~~e~I~~ir~~~~------ 140 (361)
T 3r2g_A 80 NIQEFK-KCKGPVFVSVGCTENELQRAEALRDAGADFF--CVDVAH-AHAKY---------VGKTLKSLRQLLG------ 140 (361)
T ss_dssp HHHHHH-TCCSCCBEEECSSHHHHHHHHHHHHTTCCEE--EEECSC-CSSHH---------HHHHHHHHHHHHT------
T ss_pred HHHHHh-hcceEEEEEcCCCHHHHHHHHHHHHcCCCEE--EEeCCC-CCcHh---------HHHHHHHHHHhcC------
Confidence 987653 3469999998888888899999999999944 555543 32110 0001223333221
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 377 QLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 377 Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
.+.+......+.+.+++++++|+++|+|++
T Consensus 141 ~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~ 170 (361)
T 3r2g_A 141 SRCIMAGNVATYAGADYLASCGADIIKAGI 170 (361)
T ss_dssp TCEEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred CCeEEEcCcCCHHHHHHHHHcCCCEEEEcC
Confidence 233333345688899999999999999964
No 43
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.43 E-value=1e-13 Score=123.36 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=85.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-hCCeEEeCCCCCccccccccccCCCCCCcCC-hhHHHHHHHHHHHhhhC
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATR-LGVKFIDGDHLHPQSNIDKMSAKQPLNDEDR-RPWLNNINRIIHQLNVD 109 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~-lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 109 (433)
+++..++++|+|+|++||||||+++.|++. +|++++|+|++.+...... ..+..+..... ..........+...+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~l~~~~~~ 82 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYT-EYDTELDTHIIEEKDEDRLLDFMEPIMVS 82 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSC-C------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhh-hHHHHhhhcccCCCCHHHHHHHHHHHHhc
Confidence 456678899999999999999999999999 7999999998864421110 01111111111 00011111222233323
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHH-----HhhccCCCCCCCCCeE
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQ-----FQTLEEPDPLVEPDVR 182 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~-----~~~~~~~~~~~~~~~~ 182 (433)
+.++|++.... ..+.+.....+|||++|++++.+|+.+|+. ..+ ...+..+ +..+.+.| . +++
T Consensus 83 ~g~~vi~~~~~-----~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~-~~~~~~~~~~~q~~~~l~~~~~~~y--~--~~~ 152 (184)
T 1y63_A 83 RGNHVVDYHSS-----ELFPERWFHMVVVLHTSTEVLFERLTKRQY-SEAKRAENMEAEIQCICEEEARDAY--E--DDI 152 (184)
T ss_dssp SSEEEEECSCC-----TTSCGGGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHHHHHHHHS--C--GGG
T ss_pred cCCEEEeCchH-----hhhhhccCCEEEEEECCHHHHHHHHHhCCC-ChhhhHhhHHHHHHHHHHHHHHHHh--c--cCc
Confidence 33566664321 111111114799999999999999999852 111 1112122 22223333 2 467
Q ss_pred EEcc-CCCHHHHHHH
Q psy16778 183 TVSV-NEPLEGIVSK 196 (433)
Q Consensus 183 ~Id~-~~~~ee~~~~ 196 (433)
+|++ +.+++++..+
T Consensus 153 vi~~n~~~~~~~~~~ 167 (184)
T 1y63_A 153 VLVRENDTLEQMAAT 167 (184)
T ss_dssp EEEEECSSHHHHHHH
T ss_pred EEECCCCCHHHHHHH
Confidence 8884 4899998333
No 44
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.42 E-value=1.4e-13 Score=124.39 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC---CCCcCCh--------------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP---LNDEDRR-------------------- 93 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~---~~~~~~~-------------------- 93 (433)
+.++|+|.|++||||||+++.||++||++++| ++++... ....|+. +....+.
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~---a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV---AKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT---TCC---------------------------------C
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH---HHhcCCCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence 35799999999999999999999999999999 5443211 0111221 1111110
Q ss_pred hHHHHHHHHHHHhhh-CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHH---
Q psy16778 94 PWLNNINRIIHQLNV-DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQF--- 167 (433)
Q Consensus 94 ~~~~~~~~~~~~~~~-~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~--- 167 (433)
..+....+++..+.. ...++||++.... -.+.+....++|||++|++++.+|+.++.+.+.. ...+....
T Consensus 81 ~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~----~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R 156 (201)
T 3fdi_A 81 DIAIRQFNFIRKKANEEKESFVIVGRCAE----EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMR 156 (201)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEESTTHH----HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEECCcc----hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 011233444445441 3447888764321 1233321158999999999999999887653321 11122111
Q ss_pred ----hhc--cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778 168 ----QTL--EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 168 ----~~~--~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
..+ ..|.. ...++++||++ .+++++++.|...+..
T Consensus 157 ~~~y~~~~~~~~~~-~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 157 KVYHNFYCESKWGD-SRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHCSSCTTB-GGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCC-cccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 111 11221 34578999998 8999999999876544
No 45
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.41 E-value=1e-13 Score=127.07 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=97.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
.++++|+|+|++||||||+++.|++.+|..++++|++.+...... +..|.... ...+...+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~~~~~~~~~~ 79 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP---DEIVVNMVKERLRQ 79 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCC---HHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999988764310000 00111110 11122223332221
Q ss_pred hhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--------------------------
Q psy16778 106 LNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF-------------------------- 157 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~-------------------------- 157 (433)
....+.++|+++........+.+.+.+. ..+|||+++++++.+|+..|..++
T Consensus 80 ~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~ 159 (222)
T 1zak_A 80 PDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRF 159 (222)
T ss_dssp HHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCT
T ss_pred ccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCC
Confidence 1112346888765544455566665422 689999999999999998774210
Q ss_pred -CCHHhHH----HHHhhccC---CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 158 -MPADLLE----SQFQTLEE---PDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 158 -~~~~~l~----~~~~~~~~---~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
...+.+. ..+..+.+ .| . ...++||++.+++++.+.|.+.+
T Consensus 160 ~d~~~~i~~Rl~~~~~~~~~l~~~y--~-~~~~~Id~~~~~~ev~~~I~~~l 208 (222)
T 1zak_A 160 DDTEEKVKLRLETYYQNIESLLSTY--E-NIIVKVQGDATVDAVFAKIDELL 208 (222)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHTT--C-CCEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH--H-hcEEEEECCCCHHHHHHHHHHHH
Confidence 0122222 22222222 22 2 24788998899999999987654
No 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.40 E-value=2.8e-13 Score=129.93 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=89.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCC--CCCCcCChhHH-HHHHHHHHHhh---hCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQ--PLNDEDRRPWL-NNINRIIHQLN---VDN 110 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~---~~~ 110 (433)
+++|+|+|+|||||||+++.|++++ |+.++++|.++.... ....|. .+... ..... ..+...+...+ ..+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~--~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g 78 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM--AHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGDSV 78 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT--TSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhc--cCCcccccccchh-hhhHHHHHHHHHHHHHHhhccCC
Confidence 4789999999999999999999975 999999996643211 111121 11111 11111 22334455556 677
Q ss_pred CcEEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778 111 LTGVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE 172 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~ 172 (433)
..+|+++......+++.+. +.+. ..+|||++|++++.+|+.+|..+..+.+.+..+++.+++
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~ 145 (301)
T 1ltq_A 79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMRE 145 (301)
T ss_dssp CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhc
Confidence 7888888776665555444 2222 579999999999999999998666777777777766654
No 47
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.39 E-value=3.1e-13 Score=125.80 Aligned_cols=164 Identities=13% Similarity=0.133 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC----CCcCChhHHHHHHHHHHHhhh--
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL----NDEDRRPWLNNINRIIHQLNV-- 108 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-- 108 (433)
.+++++|+|+|++||||||+++.|++++|+.++++|++.+.........|..+ ......+. ..+...+...+.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~l~~~ 104 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD-QMVLSLVDEKLKTP 104 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCH-HHHHHHHHHHTTSG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999987643211000000000 00000000 111222333332
Q ss_pred -CCCcEEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhCCC------------------------
Q psy16778 109 -DNLTGVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAEHF------------------------ 157 (433)
Q Consensus 109 -~~~~~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~~~------------------------ 157 (433)
.+.++|+++........+.+.+ ... ..+++|++|++++.+|+.+|..++
T Consensus 105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 2567888876555444444332 222 689999999999999999886210
Q ss_pred -------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 158 -------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 158 -------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
...+.+..++..+.. .|. .....+.||.+.+++++...|.+.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~-~~~~~~~id~~~~~~~v~~~i~~~ 240 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYK-NKNLLINLDATQPANDLEKKISQH 240 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHH-HTTCEEEEETTSCHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHH
Confidence 123344444333322 111 112457788889999999988754
No 48
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.39 E-value=1.9e-13 Score=124.59 Aligned_cols=162 Identities=11% Similarity=0.062 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---hCCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN---VDNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~ 112 (433)
|+|+|+|++||||||+++.|++.+|+.+++.|++.+.........+..+.. .........+...+...+ ..+.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 579999999999999999999999999999988764311100000000000 000000011122222222 23567
Q ss_pred EEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhC-------------------------------
Q psy16778 113 GVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAE------------------------------- 155 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~------------------------------- 155 (433)
+|+++..........+.+ ... ..+|||++|++++.+|+.+|..
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 899876655544444433 221 5899999999999999999820
Q ss_pred CCCCHHhHHHHHhhcc-------CCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 156 HFMPADLLESQFQTLE-------EPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 156 ~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.....+.+...+..+. +.+. .....++||++.+++++.++|...+
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~v~~~i~~~l 212 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYS-QKGVLKDIDGQQDIKKVFVDINDLL 212 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHH-cCCcEEEEECCCCHHHHHHHHHHHH
Confidence 0111233333222211 1111 1124688998899999999887654
No 49
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.38 E-value=2.3e-13 Score=124.53 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
+++++|+|+|++||||||+++.|++.+|+.++++|++.+...... +..|.... .......+.+.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~~~l~~~l~~ 78 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS---DDIMVNMIKDELTN 78 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCC---HHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999988764311000 00111110 01111222222221
Q ss_pred hhhCCCcEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhh
Q psy16778 106 LNVDNLTGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
....+.++|+++........+ .+.+.+. ..+|||+++++++.+|+..|.
T Consensus 79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 79 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 122355788886443333322 2333222 589999999999999998875
No 50
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.38 E-value=3.6e-13 Score=123.70 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhhC--CCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNVD--NLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~ 112 (433)
++|+|+|++||||||+++.|++.+|+.++++|++.+.........|.. +.. ........+...+...+.. +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDR-GDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHc-CCcCcHHHHHHHHHHHHhcccCCe
Confidence 579999999999999999999999999999988754320000000000 000 0000112233344444444 778
Q ss_pred EEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 113 GVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
+|+++......+.+.+. ... . ..+|||++|++++.+|+.+|.
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 88886554433444443 222 2 589999999999999999885
No 51
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.37 E-value=5.1e-13 Score=121.78 Aligned_cols=161 Identities=12% Similarity=0.145 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhh---hCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLN---VDNL 111 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~ 111 (433)
|+|+|+|++||||||+++.|++++|+.++++|++.+.........+.. +......+ ...+...+...+ ..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP-DEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcccccC
Confidence 579999999999999999999999999999988764311100000000 00000000 011122222222 2366
Q ss_pred cEEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhC------------------------------
Q psy16778 112 TGVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAE------------------------------ 155 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~------------------------------ 155 (433)
++|+++..........+.+ .+. ..+|||++|++++.+|+.+|..
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence 7899876655544443332 221 5799999999999999999820
Q ss_pred -CCCCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 156 -HFMPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 156 -~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.....+.+...+..+.. .|. .....++||++.+++++.++|...+
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~v~~~i~~~l 212 (216)
T 3dl0_A 160 RADDNEETVTKRLEVNMKQTAPLLDFYD-EKGYLVNVNGQQDIQDVYADLKVLL 212 (216)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHH-HHTCEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence 11223333333332211 111 1114578898899999999887654
No 52
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.37 E-value=2.8e-12 Score=120.05 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccC-----------------CCCCCcC-------
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK-----------------QPLNDED------- 91 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~-----------------~~~~~~~------- 91 (433)
+++++|+|+|++||||||+++.|+++||+.++|++.+++...+.....| +.++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 5678999999999999999999999999999999988622110000111 1111100
Q ss_pred ---------ChhH----------HHHHHHHHHH---hhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHH
Q psy16778 92 ---------RRPW----------LNNINRIIHQ---LNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSR 149 (433)
Q Consensus 92 ---------~~~~----------~~~~~~~~~~---~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~R 149 (433)
.... ...+.+.+.. .+..+.++|+++...... .+.+. .++|||++|++++.+|
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~---v~~~~--~~~ifl~A~~e~r~~R 179 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI---VFPDA--PVKIFLDASSQERAHR 179 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC---CSTTC--SEEEEEECCHHHHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee---ecCCC--CEEEEEECCHHHHHHH
Confidence 0000 0011111111 223344666654211000 01112 4799999999999999
Q ss_pred HHHh---hCCCCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778 150 LQKR---AEHFMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 150 l~~R---~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
..+. .+.....+.+...+..++. ++. ...++++||++ .+++++++.|...+.
T Consensus 180 ~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~-~~~d~~~Idts~~~~eev~~~I~~~i~ 243 (252)
T 4e22_A 180 RMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLV-PAADALVLDSTSMSIEQVIEQALAYAQ 243 (252)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHC------------CCC-CCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchh-ccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence 7541 1122333333333333222 221 22346999998 799999998876653
No 53
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.36 E-value=2.5e-13 Score=124.94 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC----CCCCcCChhHHHHHHHHHHHhhh--C
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ----PLNDEDRRPWLNNINRIIHQLNV--D 109 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~ 109 (433)
+++++|+|+|++||||||+++.|++.+|+.++++|++...........|. .+.. ......+.....+...+. .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLT 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCT
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccc
Confidence 45689999999999999999999999999999998876432100000000 0000 000001111122222222 3
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
+..+|+++.+......+.+..... ..+|||+++++++.+|+.+|.
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 567889887655555555554323 689999999999999998773
No 54
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.36 E-value=1.6e-12 Score=119.13 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcC-------------------------
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDED------------------------- 91 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~------------------------- 91 (433)
++++|+|+|++||||||+++.||+++|++++|.|.+.......++... .+....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQ-FFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHH-HHHHHHhhccccHHHHHhccccccccccccc
Confidence 467999999999999999999999999999997755321000011100 000000
Q ss_pred --C----hhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHH---HhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC--
Q psy16778 92 --R----RPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDII---RNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP-- 159 (433)
Q Consensus 92 --~----~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l---~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~-- 159 (433)
. ...+....+++..+...+ ++||.+.+.. -.+ .+. + .++|||++|++++.+|+.++.+.+..
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~-~~Vi~Grggg----~vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a 165 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESE-PCIFVGRAAG----YVLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDCIDEERA 165 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHS-CEEEESTTHH----HHHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCC-CEEEEeCCcc----hhcccccCC-CCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence 0 011222334455555444 6777633211 122 222 2 68999999999999999887654321
Q ss_pred HHhHHHHHhhccC---------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778 160 ADLLESQFQTLEE---------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 160 ~~~l~~~~~~~~~---------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
...+....+.+.. |.. .+.++++||++ .+++++++.|...+.
T Consensus 166 ~~~I~~~d~~R~~~Y~~ytg~~~~~-~~~~dl~IdT~~l~~eevv~~I~~~i~ 217 (223)
T 3hdt_A 166 KRRIKKIEKERKEYYKYFTGSEWHS-MKNYDLPINTTKLTLEETAELIKAYIR 217 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCTTC-GGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC-cccCeEEEECCCCCHHHHHHHHHHHHH
Confidence 1122222222111 221 33478999998 899999999977654
No 55
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=99.36 E-value=3.6e-13 Score=131.56 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=107.9
Q ss_pred Hhhhcceeecccc--cCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH--
Q psy16778 221 FALKVLRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE-- 296 (433)
Q Consensus 221 ~a~~~~~l~pr~l--~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee-- 296 (433)
..|++|+|+|+.| .+++++||+|+|||+++++||+++|+++....+++.+.++|++|.+.|++|++++.... +|+
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~ 132 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD 132 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence 5799999999999 78889999999999999999999999999998999999999999999999999887742 333
Q ss_pred -----HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecc-cCccccccccccCCCccchHHHHHhhCC
Q psy16778 297 -----LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV-FGTRYADIRNKFNMPSHLNIEELAEKTP 370 (433)
Q Consensus 297 -----va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~-~G~r~~~~~~~~~~~~~~s~e~i~~~~~ 370 (433)
|.+..|+...+..+......+ +..+.++..|+.++.++++... ...++.+. .|. .-...++.|.+..+
T Consensus 133 ~~~~~v~r~~P~~~~ianig~~~~~e---~~~~~ve~~~adal~ihln~~qe~~~p~Gd~--~~~-~~~~~I~~l~~~~~ 206 (365)
T 3sr7_A 133 DTSYQVKKSRPHLLLATNIGLDKPYQ---AGLQAVRDLQPLFLQVHINLMQELLMPEGER--EFR-SWKKHLSDYAKKLQ 206 (365)
T ss_dssp ------------CCEEEEEETTSCHH---HHHHHHHHHCCSCEEEEECHHHHHTSSSSCC--CCH-HHHHHHHHHHHHCC
T ss_pred ccceEehhhCCCCcEEEEeCCCCCHH---HHHHHHHhcCCCEEEEeccccccccCCCCCC--cHH-HHHHHHHHHHHhhC
Confidence 222235555666665544433 3456667889999999987421 11111000 000 00012333333322
Q ss_pred CcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778 371 QTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 371 ~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT 405 (433)
+++..|.. .+.+.++++.++|+++|+|.
T Consensus 207 -------~PVivK~vg~g~s~e~A~~l~~aGad~I~V~ 237 (365)
T 3sr7_A 207 -------LPFILKEVGFGMDVKTIQTAIDLGVKTVDIS 237 (365)
T ss_dssp -------SCEEEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 33333333 57889999999999999873
No 56
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.35 E-value=4.8e-12 Score=127.03 Aligned_cols=123 Identities=15% Similarity=0.051 Sum_probs=94.4
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
++...++.+|+|+|+|||||||+++.|++.+|+.+++.|.+. .+......+...+..+.
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~---------------------~~~~~~~~~~~~l~~g~ 310 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG---------------------SWQRCVSSCQAALRQGK 310 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC---------------------SHHHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH---------------------HHHHHHHHHHHHHhcCC
Confidence 344567789999999999999999999999999999999862 12334445566667888
Q ss_pred cEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcCHHHHHHHHHHhhC-----CCCCHHhHHHHHhhccCCCC
Q psy16778 112 TGVLVCSALRRNYRDII----RNNNR-VVFIYLKAEFGVILSRLQKRAE-----HFMPADLLESQFQTLEEPDP 175 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~~e~l~~Rl~~R~~-----~~~~~~~l~~~~~~~~~~~~ 175 (433)
.+|+++.......+..+ ++.+. ..+|||+++.+++.+|+.+|.. ...+.+.+..+...++++..
T Consensus 311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~ 384 (416)
T 3zvl_A 311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL 384 (416)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCc
Confidence 99999887665555433 33333 6899999999999999999864 13456778888888888764
No 57
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.35 E-value=2.2e-13 Score=124.71 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=76.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.|.++|+|+|||||||+++.|++++|+++++++++.+...... +..|....+ ......+.+.+....
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpd---ei~~~ll~~~l~~~~ 84 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD---SLIIGLVKERLKEAD 84 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HHHHHHHHHHHHSGG
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhcccccc---HHHHHHHHHHHhCcc
Confidence 4889999999999999999999999999999988765321100 011111110 111222333332211
Q ss_pred hCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhh
Q psy16778 108 VDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
...++|+++.+.+....+.|.+... ..||+|++|.+++.+|+..|.
T Consensus 85 -~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 85 -CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp -GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred -cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 2357999988777666667766432 689999999999999999985
No 58
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=99.35 E-value=6.9e-13 Score=130.10 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=116.2
Q ss_pred HHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechh-hhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH
Q psy16778 220 QFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPA-AMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE 296 (433)
Q Consensus 220 ~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~-~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee 296 (433)
..+|++|+|+||+|+ +++++|++|++||.+++.||++||+ |+++..+++++.+++++|.+.|++|++++.++. +|+
T Consensus 22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~ 100 (349)
T 1p0k_A 22 ETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKD 100 (349)
T ss_dssp CCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTC
T ss_pred cCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccC
Confidence 468999999999999 7789999999999999999999997 555334577899999999999999999888764 333
Q ss_pred ---------HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHh
Q psy16778 297 ---------LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAE 367 (433)
Q Consensus 297 ---------va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~ 367 (433)
+....++.+.+.|+....+.+. ..+.++.+|+.+|.++++.+.-.... .....+. .....++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~-~~~~~~~-~~~~~i~~vr~ 175 (349)
T 1p0k_A 101 PSERLSYEIVRKENPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMP-EGDRSFS-GALKRIEQICS 175 (349)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC---------CT-THHHHHHHHHH
T ss_pred cccccceehhhhhCCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCC-CCCcchH-HHHHHHHHHHH
Confidence 2334456678888875555543 33446678999999988764311000 0000000 00001233333
Q ss_pred hCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 368 KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 368 ~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
...- +.+... . ....+.+.+++|.++|+++|+++-
T Consensus 176 ~~~~-Pv~vK~--~-~~~~~~~~a~~a~~~Gad~I~v~~ 210 (349)
T 1p0k_A 176 RVSV-PVIVKE--V-GFGMSKASAGKLYEAGAAAVDIGG 210 (349)
T ss_dssp HCSS-CEEEEE--E-SSCCCHHHHHHHHHHTCSEEEEEC
T ss_pred HcCC-CEEEEe--c-CCCCCHHHHHHHHHcCCCEEEEcC
Confidence 3221 112211 0 111347889999999999999963
No 59
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.34 E-value=1.8e-13 Score=121.12 Aligned_cols=153 Identities=13% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV 114 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 114 (433)
+.++.+|+|+|+|||||||+++.|++.+|+.+++.|++........ ..+..+...... ...+.+.+...+..| ++|
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~v 83 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD-GYDEEYDCPILD--EDRVVDELDNQMREG-GVI 83 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE-EEETTTTEEEEC--HHHHHHHHHHHHHHC-CEE
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh-hhhhhhcCccCC--hHHHHHHHHHHHhcC-CEE
Confidence 4567889999999999999999999999999999998764321111 111111111000 111222233333445 466
Q ss_pred EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC-CCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778 115 LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH-FMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN- 187 (433)
Q Consensus 115 i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~- 187 (433)
++.... ..+.+.....+|||+++++++.+|+.+|+.. +.. .+.+...+..+.+.|. ++++|+++
T Consensus 84 v~~~~~-----~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~~i~~~~ 154 (180)
T 3iij_A 84 VDYHGC-----DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK----EEIVHQLPS 154 (180)
T ss_dssp EECSCC-----TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC----GGGEEEEEC
T ss_pred EEechh-----hhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC----CCeEEEcCC
Confidence 654331 1111110148999999999999999988521 110 1223344445555542 46777776
Q ss_pred CCHHHH---HHHHhcC
Q psy16778 188 EPLEGI---VSKSAIM 200 (433)
Q Consensus 188 ~~~ee~---~~~i~~~ 200 (433)
.+++++ +..|...
T Consensus 155 ~~~~ev~~~v~~i~~~ 170 (180)
T 3iij_A 155 NKPEELENNVDQILKW 170 (180)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 888888 5555433
No 60
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.34 E-value=3.9e-12 Score=113.46 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccc----cccCCCCCCcCCh-----hHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDK----MSAKQPLNDEDRR-----PWLNNINRIIHQL 106 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 106 (433)
++|+|+|++||||||+++.|++++ |+.++++|.......... ...| .+...... ..+..+...+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999999886432111000 0011 01110000 0112233445555
Q ss_pred hhCCCcEEEEc---------Cc---ccHHH-HH---HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778 107 NVDNLTGVLVC---------SA---LRRNY-RD---IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT 169 (433)
Q Consensus 107 ~~~~~~~Vi~~---------~~---~~~~~-~~---~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~ 169 (433)
+..+..+|++. ++ ....+ .+ .+..... ..+|||++|++++.+|+.+|+ +....+.+......
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~~~~~~~~~~~~~~ 158 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN-RFENKEFLEKVRKG 158 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT-CCCCHHHHHHHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC-ccchHHHHHHHHHH
Confidence 66776666662 11 11212 11 1221112 689999999999999998664 33333333333232
Q ss_pred ccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 170 LEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 170 ~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
++++.... ...++|+++.+++++.++|.+.+.+
T Consensus 159 ~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 159 FLELAKEE-ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 33221000 2558999989999999988766543
No 61
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.34 E-value=3.7e-12 Score=116.78 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC-----------------CCCc--------C
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP-----------------LNDE--------D 91 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~-----------------~~~~--------~ 91 (433)
++++|+|+|++||||||+++.|++.+|++++++|++...........|.. ++.. .
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35799999999999999999999999999999998865321100001111 1110 0
Q ss_pred Ch---hHH---------------HHHHHHHHHh---hhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH
Q psy16778 92 RR---PWL---------------NNINRIIHQL---NVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150 (433)
Q Consensus 92 ~~---~~~---------------~~~~~~~~~~---~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl 150 (433)
+. ..+ ..+.+.+... ...+.++|+++..... ..+... .++|||+++++++.+|.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~---~~~~~~--d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT---VVFPDA--PVKIFLDASSEERAHRR 158 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC---CCCTTC--SEEEEEECCHHHHHHHH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc---eEecCC--CEEEEEeCCHHHHHHHH
Confidence 00 001 1122222222 1234567777652211 111122 58999999999999995
Q ss_pred H----HhhCCCCCHHhHHHHHhh--------c-cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 151 Q----KRAEHFMPADLLESQFQT--------L-EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 151 ~----~R~~~~~~~~~l~~~~~~--------~-~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
. .| +.....+.....+.. . ++.+ ...+.++||++ .+++++.++|.+.+
T Consensus 159 ~~~l~~r-g~~~~~~~~~~~i~~R~~~~~~~~~~pl~--~~~~~~~Id~~~~~~~ev~~~I~~~l 220 (227)
T 1cke_A 159 MLQLQVK-GFSVNFERLLAEIKERDDRDRNRAVAPLV--PAADALVLDSTTLSIEQVIEKALQYA 220 (227)
T ss_dssp HHHHHHH-TCCCCHHHHHHHHC-------------CC--CCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred HHHHHhC-CccCCHHHHHHHHHHHHHhhhhhcccCcc--CCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3 33 222222322222221 1 2222 22355999999 89999999887654
No 62
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.33 E-value=1.1e-12 Score=121.18 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHH
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
....++.|+|+|++||||||+++.|++++|+.++++|++.+...... +..|.... .+.+...+
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~-------~~~~~~~i 84 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS-------DEMVLELI 84 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC-------HHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCC-------HHHHHHHH
Confidence 34566899999999999999999999999999999988754310000 00111110 11122223
Q ss_pred HHhhh---CCCcEEEEcCcccHHHHH----HHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC------------------
Q psy16778 104 HQLNV---DNLTGVLVCSALRRNYRD----IIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH------------------ 156 (433)
Q Consensus 104 ~~~~~---~~~~~Vi~~~~~~~~~~~----~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~------------------ 156 (433)
...+. .+.++|+++........+ .+.... . ..+|||+++++++.+|+..|..+
T Consensus 85 ~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~ 164 (233)
T 1ak2_A 85 EKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPM 164 (233)
T ss_dssp HHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTT
T ss_pred HHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccc
Confidence 33222 235688886443333333 333222 2 68999999999999999888411
Q ss_pred -------C------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 157 -------F------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 157 -------~------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+ ...+.+...+..+.. .|. .....++||++.+++++.+.|.+.+
T Consensus 165 ~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~-~~~~~~~id~~~~~~~v~~~I~~~l 228 (233)
T 1ak2_A 165 KDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYS-KRGIHSAIDASQTPDVVFASILAAF 228 (233)
T ss_dssp BCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence 1 112233333322221 110 1124688998899999999887654
No 63
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.33 E-value=3e-12 Score=116.63 Aligned_cols=116 Identities=10% Similarity=0.090 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhC---CCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVD---NLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~ 112 (433)
|+|+|+|++||||||+++.|++.+|+.++++|++.++........|..+.. .........+...+...+.. +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 479999999999999999999999999999988764310000001100000 00000011222233333322 246
Q ss_pred EEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 113 GVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 113 ~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
+|+++........+.+.+.+ . ..+|||+++++++.+|+.+|.
T Consensus 81 ~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp EEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 78876544444445555432 2 689999999999999998775
No 64
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.33 E-value=9.8e-13 Score=119.28 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=93.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc--c-----ccc-cccCCCCCCcCChhHHH--HH--HHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS--N-----IDK-MSAKQPLNDEDRRPWLN--NI--NRI 102 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~--~-----~~~-~~~~~~~~~~~~~~~~~--~~--~~~ 102 (433)
++++++|+|+|++||||||+++.|+++++..+++.|.+.... . ... ...+..+........+. .. .+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999876666654332211 0 000 01111111100001111 00 012
Q ss_pred HHHhhhCCCcEEEEcCccc----HHH-----HHHHHh---c-CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778 103 IHQLNVDNLTGVLVCSALR----RNY-----RDIIRN---N-NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ 168 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~~~----~~~-----~~~l~~---~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~ 168 (433)
+...+..+..+|++..... ... .+++.. . .. ..+|||++|++++.+|+.+|.++....+.......
T Consensus 87 i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~~ 166 (212)
T 2wwf_A 87 IKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYE 166 (212)
T ss_dssp HHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHHH
T ss_pred HHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHHH
Confidence 4444556666777654321 011 123321 1 12 68999999999999999765333333332222223
Q ss_pred hccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 169 TLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.+.++. ...++++||++.+++++.++|.+.+..
T Consensus 167 ~~~~~~--~~~~~~~Id~~~~~~~~~~~i~~~l~~ 199 (212)
T 2wwf_A 167 TYKHFA--HEDYWINIDATRKIEDIHNDIVKEVTK 199 (212)
T ss_dssp HGGGGT--TCTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred HHHHHh--ccCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 333332 133689999999999999998877654
No 65
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.33 E-value=2.4e-12 Score=115.28 Aligned_cols=146 Identities=20% Similarity=0.189 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc---cc--ccCC----------------CCCCcCChhHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID---KM--SAKQ----------------PLNDEDRRPWL 96 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~---~~--~~~~----------------~~~~~~~~~~~ 96 (433)
..+|+|+|++||||||+++.|++.+|++++|+|.+.+..... .+ ..|. .|.++.....+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l 91 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKL 91 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHH
Confidence 379999999999999999999998899999999985331110 00 0011 12221111111
Q ss_pred HH-----HHHHHHHhhhC-CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhc
Q psy16778 97 NN-----INRIIHQLNVD-NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTL 170 (433)
Q Consensus 97 ~~-----~~~~~~~~~~~-~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~ 170 (433)
+. +...+...... +..+|+++..+.+.. +.... ..+|||++|++++.+|+ +..++..+
T Consensus 92 ~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~---~~~~~-d~vi~v~a~~e~r~~Rl------------i~~q~~~~ 155 (192)
T 2grj_A 92 ELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMG---LDQLC-DHVITVVASRETILKRN------------READRRLK 155 (192)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTT---GGGGC-SEEEEEECCHHHHHHHC------------SSHHHHHT
T ss_pred HhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecC---hHHhC-CEEEEEECCHHHHHHHH------------HHhcCCch
Confidence 11 11111222222 333445544333321 22222 47999999999999998 12233331
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+.. .+.++++|+++.+++++..++.+.+
T Consensus 156 ~~~~--~~~AD~vI~n~~~~~~l~~~v~~~~ 184 (192)
T 2grj_A 156 FQED--IVPQGIVVANNSTLEDLEKKVEEVM 184 (192)
T ss_dssp TCTT--CCCCSEEEECSSCHHHHHHHHHHHH
T ss_pred hhhH--HhcCCEEEECCCCHHHHHHHHHHHH
Confidence 1111 3458899999999999998886543
No 66
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.33 E-value=2.8e-11 Score=108.96 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=92.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc-ccccccCCCCCCcCChhHHHHH------------
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN-IDKMSAKQPLNDEDRRPWLNNI------------ 99 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------ 99 (433)
+++++|.+|+|+|++||||||+++.|++.+....++...+..... ......++.++.......+...
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYER 81 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecc
Confidence 457789999999999999999999999987655555544432211 0111234444443222221110
Q ss_pred -----HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEc-CHHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778 100 -----NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKA-EFGVILSRLQKRAEHFMP--ADLLESQFQTL 170 (433)
Q Consensus 100 -----~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~-~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~ 170 (433)
...+...+..+..+|++... .....+.+... ..+||+.. +++++.+|+.+|+..... ...+..+....
T Consensus 82 ~~~~~~~~i~~~l~~g~~vi~d~~~---~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~ 158 (205)
T 3tr0_A 82 HYGTEKDWVLRQLKAGRDVLLEIDW---QGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEM 158 (205)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCH---HHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHcCCeEEEEECH---HHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 12455556677777777542 11122223222 45666665 699999999999743222 23344443333
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.. ..++++|+++ +++++.+++...+
T Consensus 159 ~~~----~~~d~vi~n~-~~~~~~~~l~~~i 184 (205)
T 3tr0_A 159 AHY----KEFDYLVVND-NFDQAVQNLIHII 184 (205)
T ss_dssp TTG----GGCSEEEECS-SHHHHHHHHHHHH
T ss_pred hcc----cCCCEEEECC-CHHHHHHHHHHHH
Confidence 222 2356777776 8888888886655
No 67
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.33 E-value=1.5e-12 Score=117.63 Aligned_cols=156 Identities=11% Similarity=0.142 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc------cccccc--ccCC-CCCCcCC-------------hhHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ------SNIDKM--SAKQ-PLNDEDR-------------RPWL 96 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~------~~~~~~--~~~~-~~~~~~~-------------~~~~ 96 (433)
..|+|||.+||||||+++.|++ +|++++|+|.+... .....+ ..|. .+...+. ....
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 5899999999999999999998 89999999986321 000000 0111 1211111 1112
Q ss_pred HHHHHHHHH--------hh-hCCC-cEEEEcCcccH-HHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778 97 NNINRIIHQ--------LN-VDNL-TGVLVCSALRR-NYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES 165 (433)
Q Consensus 97 ~~~~~~~~~--------~~-~~~~-~~Vi~~~~~~~-~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~ 165 (433)
..++.++.. .. ..+. .+|++..-+.+ .....+. +.+|++++|++++.+|+.+|.+ ...+.+..
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~----D~vi~V~ap~e~r~~Rl~~Rdg--~s~eea~~ 162 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARC----DRVLVVDCPVDTQIARVMQRNG--FTREQVEA 162 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHC----SEEEEEECCHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccC----CeEEEEECCHHHHHHHHHhcCC--CCHHHHHH
Confidence 223333222 11 1233 45666655555 3333222 3799999999999999999974 33333333
Q ss_pred HHhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
.+..+.+.....+.++++|+++ .+.+++..++.+.+
T Consensus 163 ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~ 199 (210)
T 4i1u_A 163 IIARQATREARLAAADDVIVNDAATPDALAVQVDALH 199 (210)
T ss_dssp HHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 3322222111123488999999 99999999886543
No 68
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.32 E-value=4.8e-12 Score=114.85 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc---c----ccc-cccCCCCCCcCChhHHH--HH--HHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS---N----IDK-MSAKQPLNDEDRRPWLN--NI--NRI 102 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~---~----~~~-~~~~~~~~~~~~~~~~~--~~--~~~ 102 (433)
++++++|+|+|++||||||+++.|+++++..+++.+.+..+. . ... ...+..+........+. .. .+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 85 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL 85 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998854443333222110 0 000 01111121110000000 00 023
Q ss_pred HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHH---hHHH
Q psy16778 103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPAD---LLES 165 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~---~l~~ 165 (433)
+...+..+..+|++... ....+...+.... . ..+|||++|++++.+|+..|.++....+ .+..
T Consensus 86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~ 165 (215)
T 1nn5_A 86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR 165 (215)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHH
T ss_pred HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHH
Confidence 44555667667777321 1222322222211 1 6899999999999999975433333222 2333
Q ss_pred HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
++..+...+ ....++|+++.+++++.++|.+.+
T Consensus 166 ~~~~~~~~~---~~~~~~Id~~~~~e~~~~~i~~~l 198 (215)
T 1nn5_A 166 CFHQLMKDT---TLNWKMVDASKSIEAVHEDIRVLS 198 (215)
T ss_dssp HHHHHTTCT---TSCEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHH
Confidence 344433322 125688988899999998887664
No 69
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.31 E-value=8e-12 Score=116.84 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=94.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe----------EEeCCCCCcccccc----ccccCCCCCCcCChhHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVK----------FIDGDHLHPQSNID----KMSAKQPLNDEDRRPWLNNIN 100 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~----------~id~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 100 (433)
..++.+|+|+|++||||||+++.|++.+|+. ++++|+++...... .....+.|..+.... ...+.
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d-~~~l~ 97 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFD-NELIL 97 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBC-HHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhh-HHHHH
Confidence 3456799999999999999999999999987 89999997632211 111234554433321 11122
Q ss_pred HHHHHhhh------------------------CCCcEEEEcCccc-HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC
Q psy16778 101 RIIHQLNV------------------------DNLTGVLVCSALR-RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE 155 (433)
Q Consensus 101 ~~~~~~~~------------------------~~~~~Vi~~~~~~-~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~ 155 (433)
..+..+.. ....+|+++.... .. .+.+.. ..+|||+++++++.+|+.+|..
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~---~~~~~~-d~vi~l~~~~e~~~~R~~~R~~ 173 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ---EVRDLF-QMKLFVDTDADTRLSRRVLRDI 173 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH---HHHHHC-SEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH---HHHHhc-CeeEEEeCCHHHHHHHHHHHHH
Confidence 22222211 1223455543332 11 122222 3799999999999999988851
Q ss_pred --CCCCHHhHHHHHhhc-----c---CCCCCCCCCeEEE----ccCCCHHHHHHHHhcCCCC
Q psy16778 156 --HFMPADLLESQFQTL-----E---EPDPLVEPDVRTV----SVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 156 --~~~~~~~l~~~~~~~-----~---~~~~~~~~~~~~I----d~~~~~ee~~~~i~~~l~~ 203 (433)
+....+.+...+..+ . .++ .+.++++| +++.+++++.++|.+.+..
T Consensus 174 ~~rg~~~e~i~~~~~~~~~~~~~~~i~~~--~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 174 SERGRDLEQILSQYITFVKPAFEEFCLPT--KKYADVIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp HHSCCCHHHHHHHHHHTHHHHHHHHTGGG--GGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred hhhCCCHHHHHHHHHHhccHHHHHHhhhh--hhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence 112333333332221 1 122 23367888 7768899998888776543
No 70
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.31 E-value=2.5e-12 Score=116.16 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----------------------------
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----------------------------- 89 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----------------------------- 89 (433)
++|+|+|++||||||+++.|++.+|++++|.|.+...........|..+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 82 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE 82 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence 389999999999999999999999999999998864321100001111100
Q ss_pred ----cCChhHHH----------HHHHHHHHhh--hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 90 ----EDRRPWLN----------NINRIIHQLN--VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 90 ----~~~~~~~~----------~~~~~~~~~~--~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
......+. .+.+.+.... .. ..+|+++..... ..+... ..+|||++|++++.+|+.+|
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~~---~~~~~~--d~~i~l~a~~e~~~~R~~~r 156 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMGT---AVFPEA--AHKFYLTASPEVRAWRRARE 156 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCCC---CCCTTC--SEEEEEECCHHHHHHHHHHT
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEccceeE---EEecCC--cEEEEEECCHHHHHHHHHhh
Confidence 00000000 1111111110 11 356666543220 011111 58999999999999999888
Q ss_pred hCCCCCHHhHHHHHhhccCCCCC--CCCCe-EEEccC-CCHHHHHHHHhcC
Q psy16778 154 AEHFMPADLLESQFQTLEEPDPL--VEPDV-RTVSVN-EPLEGIVSKSAIM 200 (433)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~-~~Id~~-~~~ee~~~~i~~~ 200 (433)
.. ...+.+...+..++..+.. ...++ ++||++ .+++++.++|.+.
T Consensus 157 ~~--~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~ 205 (208)
T 3ake_A 157 RP--QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAH 205 (208)
T ss_dssp SS--SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHH
T ss_pred cc--cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 53 2334444444433222210 22244 999999 5999999988754
No 71
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.31 E-value=4.1e-12 Score=112.27 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEE--eCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.+|++|+|+|++||||||+++.|++.+ |++++ +.|.+... +.....+........++.+......+...+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG-----LNKNLGFSPEDREENVRRIAEVAKLFADAG 77 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-----TTTTCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHH-----HhhccccccccHHHHHHHHHHHHHHHHHCC
Confidence 467899999999999999999999988 97776 44444221 111122222222334444433221122344
Q ss_pred CcEEEEcCcc--c----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHh------hCCCCCHHhHHHHHhhccCCCCCC
Q psy16778 111 LTGVLVCSAL--R----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKR------AEHFMPADLLESQFQTLEEPDPLV 177 (433)
Q Consensus 111 ~~~Vi~~~~~--~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~ 177 (433)
+++.++.. . ...++.+..... +.+|||++|++++.+|+.+| ....... ......+...
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 148 (179)
T 2pez_A 78 --LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-------TGIDSEYEKP 148 (179)
T ss_dssp --CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-------BTTTBCCCCC
T ss_pred --CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-------ccCCccccCC
Confidence 33333332 1 222333333222 68999999999999997543 1111100 0011111111
Q ss_pred CCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 178 EPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 178 ~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
+.++++|+++ .+++++.++|.+.+
T Consensus 149 ~~ad~vid~~~~~~~~~~~~i~~~l 173 (179)
T 2pez_A 149 EAPELVLKTDSCDVNDCVQQVVELL 173 (179)
T ss_dssp SSCSEEEETTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHH
Confidence 2367889887 79999999987654
No 72
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.31 E-value=5.2e-12 Score=116.19 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=92.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcC-----------------------
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDED----------------------- 91 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~----------------------- 91 (433)
++++++|+|+|++||||||+++.|++++|+.++++|.+++...+..+..|....+..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 345689999999999999999999999999999999986443322222233222110
Q ss_pred ------------------------ChhHHHHHHHHHHHhhhCCCcEEEEcC--c--ccHHHHHHHHhcCCeEEEEEEcCH
Q psy16778 92 ------------------------RRPWLNNINRIIHQLNVDNLTGVLVCS--A--LRRNYRDIIRNNNRVVFIYLKAEF 143 (433)
Q Consensus 92 ------------------------~~~~~~~~~~~~~~~~~~~~~~Vi~~~--~--~~~~~~~~l~~~~~~~vv~L~~~~ 143 (433)
.....+.+.+....+.....++|+++- + ..+ +. .+.|||++|+
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~p-------da--~lkifl~A~~ 156 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLP-------DA--DVKIFLTASA 156 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCT-------TC--SEEEEEECCH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcC-------CC--CEEEEEECCH
Confidence 000011222222333333146777642 1 111 12 4899999999
Q ss_pred HHHHHHHHHh---hCCCCCHHhHHHHH--------hhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCC
Q psy16778 144 GVILSRLQKR---AEHFMPADLLESQF--------QTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRA 205 (433)
Q Consensus 144 e~l~~Rl~~R---~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~ 205 (433)
+++.+|..+. .+.....+.+...+ .++..+.. ...+.++||++ .+++++++.|...+..+.
T Consensus 157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~-~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLR-AADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCS-CCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccc-cccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 9999997642 11222322222221 12222321 22234999998 999999999998876643
No 73
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.31 E-value=9e-12 Score=129.67 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCC--CCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGD--HLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
++++|+|+|++||||||+++.|++++ |+.+++.| .+.. .+..+..|........++.+.+++..+...|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-----~L~~~~~fs~~dree~~r~i~eva~~~l~~G~ 125 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-----GLNKNLGFSPEDREENVRRIAEVAKLFADAGL 125 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-----TTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-----ccCccccCChhhhHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999 88876654 3321 11223334434445566666665666666775
Q ss_pred cEEEEcCccc----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh---CCCCCHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778 112 TGVLVCSALR----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA---EHFMPADLLESQFQTLEEPDPLVEPDVRT 183 (433)
Q Consensus 112 ~~Vi~~~~~~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 183 (433)
.+|.+..... ...++.+.+... +++|||++|++++.+|+.++. .+.. . ...+......|...+.++++
T Consensus 126 iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~---~-~~~~~~~~~~Ye~p~~~dlv 201 (630)
T 1x6v_B 126 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG---E-IKGFTGIDSEYEKPEAPELV 201 (630)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC--------CBTTTBCCCCCSSCSEE
T ss_pred EEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh---h-HHHHHHhhhhhcccCCCcEE
Confidence 5555533322 333444444332 689999999999999975210 0000 0 01122233333211346799
Q ss_pred EccC-CCHHHHHHHHhcCCC
Q psy16778 184 VSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 184 Id~~-~~~ee~~~~i~~~l~ 202 (433)
||++ .++++++++|.+.+.
T Consensus 202 IDts~~s~eevv~~Il~~L~ 221 (630)
T 1x6v_B 202 LKTDSCDVNDCVQQVVELLQ 221 (630)
T ss_dssp EETTSSCHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHH
Confidence 9998 799999999877664
No 74
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.31 E-value=1.4e-12 Score=116.29 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCc----CC----hhHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDE----DR----RPWLNNINRIIHQ 105 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~ 105 (433)
++|+|+|++||||||+++.|+++++ +.++++|++...... ..++..... .. ...+....+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 78 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL---KLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAE 78 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH---TTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHH---hcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999997 788887665432110 111110000 00 1122222223344
Q ss_pred hh--hCCCcEEEEcCcc--------cHHHHHHHHhcCCeEEEEEEcCHHHHHHH-HHH--hhC-CCCCHHh------HHH
Q psy16778 106 LN--VDNLTGVLVCSAL--------RRNYRDIIRNNNRVVFIYLKAEFGVILSR-LQK--RAE-HFMPADL------LES 165 (433)
Q Consensus 106 ~~--~~~~~~Vi~~~~~--------~~~~~~~l~~~~~~~vv~L~~~~e~l~~R-l~~--R~~-~~~~~~~------l~~ 165 (433)
.+ ..+..+|+++... .....+.+++.....+|||++|++++.+| +.. |+. .....+. +..
T Consensus 79 ~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~ 158 (194)
T 1nks_A 79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFAR 158 (194)
T ss_dssp HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HhhccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHH
Confidence 44 5666777776421 00002223322125899999999998866 766 643 2222222 222
Q ss_pred HHhhccCCCCCCCCCeEEE-ccCCCHHHHHHHHhcC
Q psy16778 166 QFQTLEEPDPLVEPDVRTV-SVNEPLEGIVSKSAIM 200 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~I-d~~~~~ee~~~~i~~~ 200 (433)
.+..+...+ .....++| +++.+++++.++|.+.
T Consensus 159 ~~~~~~~~~--~~~~~~~I~d~~~~~e~v~~~I~~~ 192 (194)
T 1nks_A 159 YAATASAVL--AGSTVKVIVNVEGDPSIAANEIIRS 192 (194)
T ss_dssp HHHHHHHHH--HTCEEEEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 232222211 11245788 7779999999988754
No 75
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=99.31 E-value=6.2e-13 Score=129.47 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=107.3
Q ss_pred hHHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccch---HHHHHHHHhcCCceEEecCCCCC
Q psy16778 219 EQFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGE---IGNAAAVGEVGGIYILSTISTTS 293 (433)
Q Consensus 219 ~~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e---~~~a~aa~~~g~~~~~s~~s~~~ 293 (433)
|+.+|++|+|+||+|. +++++|++|++||++++.||++||+++ .|+.+| .+++++|.+.|+++++|+.++.
T Consensus 24 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g---~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~- 99 (332)
T 1vcf_A 24 TTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTG---GEENGERINLALAEAAEALGVGMMLGSGRIL- 99 (332)
T ss_dssp CCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHHHHHTCEEEEEECHHH-
T ss_pred chhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEecccc---CCcchhHHHHHHHHHHHHcCCCEEeCCchhc-
Confidence 4578999999999999 778999999999999999999999874 388876 7899999999999999998875
Q ss_pred HHHHHHhCCCCcceEEEeecc-C---------HHH----HHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCcc
Q psy16778 294 IEELAEKTPQTTKWFQLYIYR-D---------REI----TKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSH 359 (433)
Q Consensus 294 ~eeva~~~~~~~~w~qly~~~-d---------~~~----~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~ 359 (433)
+|+. +...|||+.-.. | ..+ .....+.++..++.++.++++...-... +....| .
T Consensus 100 le~~-----~~~~~~ql~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~--~~~~~~----~ 168 (332)
T 1vcf_A 100 LERP-----EALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ--RGDTDF----R 168 (332)
T ss_dssp HHCT-----TTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHT--TSCCCC----T
T ss_pred ccCC-----CccceEEeeccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchHHHHhc--CCCccH----H
Confidence 6653 334677752110 0 000 1233444456688888877753100000 000000 0
Q ss_pred chHHHHHhhCCCcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778 360 LNIEELAEKTPQTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 360 ~s~e~i~~~~~~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT 405 (433)
...+.|..... | .+++..+.. ++.+.+++++++|+++|+|+
T Consensus 169 ~~~~~i~~vr~----~-~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs 212 (332)
T 1vcf_A 169 GLVERLAELLP----L-PFPVMVKEVGHGLSREAALALRDLPLAAVDVA 212 (332)
T ss_dssp THHHHHHHHCS----C-SSCEEEECSSSCCCHHHHHHHTTSCCSEEECC
T ss_pred HHHHHHHHHHc----C-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEeC
Confidence 12344433321 0 122222212 67788999999999999884
No 76
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.30 E-value=2.2e-12 Score=116.71 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc--------cccCCCCCCc-CCh-------------hHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK--------MSAKQPLNDE-DRR-------------PWL 96 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~--------~~~~~~~~~~-~~~-------------~~~ 96 (433)
.+|+|+|++||||||+++.|++ +|++++|+|.+........ ...|..+-.. ... ...
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5899999999999999999998 8999999998753210000 0012111110 000 001
Q ss_pred HHHHHH--------HHHhhh--CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778 97 NNINRI--------IHQLNV--DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ 166 (433)
Q Consensus 97 ~~~~~~--------~~~~~~--~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~ 166 (433)
..++.. +..... .+..+|+++.-..+.. +.... ..+|||++|++++.+|+.+|.+. ..+.+...
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~---~~~~~-d~vi~l~~~~e~~~~Rl~~R~~~--~~e~~~~r 155 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LTALC-DRILVVDVSPQTQLARSAQRDNN--NFEQIQRI 155 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CGGGC-SEEEEEECCHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC---cHhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence 111111 111121 2334555553322221 22222 47999999999999999988542 33434444
Q ss_pred HhhccCCCCCCCCCeEEEccCCCHH----HHHHHHhcCC
Q psy16778 167 FQTLEEPDPLVEPDVRTVSVNEPLE----GIVSKSAIMP 201 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~Id~~~~~e----e~~~~i~~~l 201 (433)
+..........+.++++|+++.+++ ++.++|.+.+
T Consensus 156 ~~~q~~~~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 156 MNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp HHHSCCHHHHHHHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 3322111000113679999988999 8888886654
No 77
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=99.29 E-value=8.4e-13 Score=129.82 Aligned_cols=133 Identities=29% Similarity=0.453 Sum_probs=93.7
Q ss_pred CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc--------
Q psy16778 289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD-------- 349 (433)
Q Consensus 289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~-------- 349 (433)
.+..++|+.|+...+...|-|+....+++.+...++.+ |..+.+ ++.+.++|.+...
T Consensus 14 ~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~----f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma 89 (368)
T 2nli_A 14 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRA----WKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIA 89 (368)
T ss_dssp SCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHG----GGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCS
T ss_pred CCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHH----HhheeeeccccCCCccCCcceEECCEecCCceeecchh
Confidence 46678999999888888999999999999987777655 555555 2335566664431
Q ss_pred ---------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCC
Q psy16778 350 ---------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDT 408 (433)
Q Consensus 350 ---------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~ 408 (433)
.+..+++ ..+.++|++.+..++.+.|||||+++|+..+.+.++||+++|+++|+||+|+
T Consensus 90 ~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~ 169 (368)
T 2nli_A 90 AHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADS 169 (368)
T ss_dssp CGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBC
T ss_pred hccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 1111111 1235789998765566789999999999999999999999999999999999
Q ss_pred CCCCCchhhhhcCCCCC
Q psy16778 409 NVFGTRYADIRNKFNMP 425 (433)
Q Consensus 409 ~~~g~r~~~~r~~~~~~ 425 (433)
|+.|+|++|.|++|.+|
T Consensus 170 p~~g~r~~d~~~~~~~p 186 (368)
T 2nli_A 170 TVSGNRDRDVKNKFVYP 186 (368)
T ss_dssp C---CBC--------CC
T ss_pred CcccchhHHHhhcccCc
Confidence 99999999999999888
No 78
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.29 E-value=6.8e-12 Score=112.23 Aligned_cols=163 Identities=16% Similarity=0.109 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccc---cCCCCCCcCChh-----HHHHHHHHHHHhh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMS---AKQPLNDEDRRP-----WLNNINRIIHQLN 107 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~ 107 (433)
+.|+|+|++||||||+++.|++.+ |+.++.++............ ....+....... ....+.. +...+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 479999999999999999999999 99998776532111000000 000111100000 0111222 33444
Q ss_pred hCCCcEEEEcC----------c--ccHHHHHHHH---h-cCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhc
Q psy16778 108 VDNLTGVLVCS----------A--LRRNYRDIIR---N-NNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTL 170 (433)
Q Consensus 108 ~~~~~~Vi~~~----------~--~~~~~~~~l~---~-~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~ 170 (433)
..+..++++.. + ....+...+. . ... ..+|||++|++++.+|+.+|. +....+.+......+
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~ 158 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN-RFEKREFLERVREGY 158 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-CCCCHHHHHHHHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC-cccHHHHHHHHHHHH
Confidence 56666666622 1 2233322222 1 111 689999999999999999984 344334333333222
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.+.........++||++.+++++.++|.+.+.+
T Consensus 159 ~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 159 LVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 221110112568899999999999999888765
No 79
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.28 E-value=3.2e-12 Score=131.99 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=88.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
...+|++|+|+|+|||||||+++.|++.++ +.++++|++... +..+..|.......+++.+..++..+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-----l~~~l~f~~~~r~~~~r~i~~v~q~l~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-----LSSELGFSKAHRDVNVRRIGFVASEIT 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-----TTSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-----hccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999883 447899887421 122333443333344555555555554
Q ss_pred hCCCcEEEEcCc-----ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCC
Q psy16778 108 VDNLTGVLVCSA-----LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPD 180 (433)
Q Consensus 108 ~~~~~~Vi~~~~-----~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~ 180 (433)
..+ .+++..+. .....++.+...+++++|||+++.+++.+|.. | +.... ...+...+......+. -+.+
T Consensus 440 ~~~-~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~-r-~l~~~~~~~~i~~l~~~r~~~e~-P~~a 515 (552)
T 3cr8_A 440 KNR-GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR-K-GLYAKARAGLIPEFTGVSDPYEV-PETP 515 (552)
T ss_dssp HTT-CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-------------------------------CCCCC-CSSC
T ss_pred hcC-CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc-c-cccccccHhHHHHHHhccccccC-CCCC
Confidence 455 45554332 22345666665433589999999999999964 2 22211 1234444433333221 1347
Q ss_pred eEEEccC-CCHHHHHHHHhcCCCC
Q psy16778 181 VRTVSVN-EPLEGIVSKSAIMPPT 203 (433)
Q Consensus 181 ~~~Id~~-~~~ee~~~~i~~~l~~ 203 (433)
+++|+++ .++++++++|...+..
T Consensus 516 dl~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 516 ELAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp SEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHHh
Confidence 8999998 8999999999877643
No 80
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.28 E-value=2e-11 Score=110.36 Aligned_cols=162 Identities=10% Similarity=0.080 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCe--EEeCCCCCccccccc-ccc-CC--CCCCcCChhH-----HHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVK--FIDGDHLHPQSNIDK-MSA-KQ--PLNDEDRRPW-----LNNINRIIHQ 105 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~--~id~D~~~~~~~~~~-~~~-~~--~~~~~~~~~~-----~~~~~~~~~~ 105 (433)
++++|+|+|++||||||+++.|++.++.. ++..+.-.... ... ... +. .+......-. +..+...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~ 81 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDW-IHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILP 81 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCH-HHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHH-HHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998763 44432211110 000 000 10 1111000000 0111223344
Q ss_pred hhhCCCcEEEEcCcccH-----------HHHHHHHhcCC--eEEEEEEcCHHHHHHHHH-HhhC-CC-------------
Q psy16778 106 LNVDNLTGVLVCSALRR-----------NYRDIIRNNNR--VVFIYLKAEFGVILSRLQ-KRAE-HF------------- 157 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~~~-----------~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~-~R~~-~~------------- 157 (433)
.+..+..+|++...... .+...+.+... ..+|||++|++++.+|+. +|.. ..
T Consensus 82 ~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~ 161 (213)
T 2plr_A 82 MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSP 161 (213)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCH
T ss_pred HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccch
Confidence 45567667777643221 22233333221 679999999999999998 7752 11
Q ss_pred CCH-HhHHHH-HhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 158 MPA-DLLESQ-FQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 158 ~~~-~~l~~~-~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
... ..+... ...+..... . ...++||++.+++++.++|.+.+
T Consensus 162 ~e~~~~~~~r~~~~~~~~~~-~-~~~~~Id~~~~~e~v~~~I~~~l 205 (213)
T 2plr_A 162 EEGFLKYQGLITEVYDKLVK-D-ENFIVIDGTKTPKEIQIQIRKFV 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-T-TTCEEEETTSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHh-h-CCEEEEECCCCHHHHHHHHHHHH
Confidence 000 111111 111222211 1 15689999999999999887654
No 81
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.27 E-value=2.4e-12 Score=117.55 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=88.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------cccc--ccCCC-CCCc--CChhH---------
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKM--SAKQP-LNDE--DRRPW--------- 95 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~--~~~~~-~~~~--~~~~~--------- 95 (433)
.++++|+|+|++||||||+++.|++ +|++++|+|.+..... ...+ ..|.. +... .....
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~ 80 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP 80 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence 3578999999999999999999998 9999999987643210 0000 00111 1100 00000
Q ss_pred --HHHHHHHHHH--------hhhC-CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHH
Q psy16778 96 --LNNINRIIHQ--------LNVD-NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLE 164 (433)
Q Consensus 96 --~~~~~~~~~~--------~~~~-~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~ 164 (433)
...++..+.. .... +..+++..+....... +.... ..+|||++|++++.+|+.+|.+. ..+.+.
T Consensus 81 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~~~~-d~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~ 155 (218)
T 1vht_A 81 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LYKKA-NRVLVVDVSPETQLKRTMQRDDV--TREHVE 155 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GGGGC-SEEEEEECCHHHHHHHHHHHHTC--CHHHHH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--ccccC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHH
Confidence 0111111111 1111 2234444333211111 11222 48999999999999999998642 334444
Q ss_pred HHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 165 SQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+..+...+.+.+.++++|+++.+++++.++|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~I~~~l 192 (218)
T 1vht_A 156 QILAAQATREARLAVADDVIDNNGAPDAIASDVARLH 192 (218)
T ss_dssp HHHHHSCCHHHHHHHCSEEEECSSCTTSHHHHHHHHH
T ss_pred HHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 4443332211111225689999888888888876654
No 82
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.27 E-value=3.8e-12 Score=131.66 Aligned_cols=160 Identities=21% Similarity=0.178 Sum_probs=102.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN 110 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
..+.+|+|+|++||||||+++.|++.++ +.++|+|.+... +..+..|.......+++.+...+...+..|
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~-----l~~~~~f~~~er~~~l~~i~~~~~~~l~~G 444 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTH-----LSRGLGFSKEDRITNILRVGFVASEIVKHN 444 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHH-----TCTTCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhh-----hcccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999885 378888876422 122333443333333444445566666778
Q ss_pred CcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778 111 LTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 111 ~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~ 187 (433)
..+|+++....+..++.+++... +.+|||++|.+++.+|+.++.-.......++.+....+..+. .+.++++||++
T Consensus 445 ~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~-~~~adivIDts 523 (546)
T 2gks_A 445 GVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEP-PVAPEVRVDTT 523 (546)
T ss_dssp CEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCC-CSSCSEEEETT
T ss_pred CEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhcccc-ccCCcEEEECC
Confidence 78888876666666666665432 489999999999999985211000011222322222222221 13467999997
Q ss_pred -CCHHHHHHHHhcCC
Q psy16778 188 -EPLEGIVSKSAIMP 201 (433)
Q Consensus 188 -~~~ee~~~~i~~~l 201 (433)
.++++++++|.+.+
T Consensus 524 ~~s~eev~~~I~~~L 538 (546)
T 2gks_A 524 KLTPEESALKILEFL 538 (546)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 89999999997765
No 83
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.27 E-value=3.9e-11 Score=108.54 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=91.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCcccccccc-ccCCCCCC-c--CC-hhHHHHHHHHHHHh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKM-SAKQPLND-E--DR-RPWLNNINRIIHQL 106 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~-~~~~~~~~-~--~~-~~~~~~~~~~~~~~ 106 (433)
.+.+++.+|+|+|++||||||+++.|++.+ ++.+++.|.+......... ..+....+ . .. ......+...+...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~ 95 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA 95 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999988 8999999998643211110 11111000 0 00 11112222222211
Q ss_pred h----------hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-HHhHH-H---H----H
Q psy16778 107 N----------VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-ADLLE-S---Q----F 167 (433)
Q Consensus 107 ~----------~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-~~~l~-~---~----~ 167 (433)
. .....+||..+.....+.. +.+.. ..++|++++++++.+|+.+|...... ...+. . . .
T Consensus 96 ~~~~~~~~~~~~~~~~~vi~eg~~~~~~~~-~~~~~-d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~ 173 (207)
T 2qt1_A 96 RHSVVSTDQESAEEIPILIIEGFLLFNYKP-LDTIW-NRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYR 173 (207)
T ss_dssp TTSSCCC-----CCCCEEEEECTTCTTCGG-GTTTC-SEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHH
T ss_pred CCCCcCCCeeecCCCCEEEEeehHHcCcHH-HHHhc-CeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHH
Confidence 0 0112344444432211111 11221 58999999999999999887521111 11122 1 1 1
Q ss_pred hhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 168 QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
+.+.... ...++||++.+++++.++|.+.+..
T Consensus 174 ~~~~~~~----~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 174 QEMQDIT----WEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHGGGCS----SCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHhcC----CeEEEecCCCCHHHHHHHHHHHHHh
Confidence 1222221 1346689999999999998876543
No 84
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.26 E-value=2.4e-12 Score=116.18 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccCCC-CCC--cCCh-----------hHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAKQP-LND--EDRR-----------PWL 96 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~~~-~~~--~~~~-----------~~~ 96 (433)
++|+|+|++||||||+++.|++ +|+.++++|.+...... ..+ ..|.. +.. .... ...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4899999999999999999999 99999999987532110 000 01111 110 0000 001
Q ss_pred HHHHHHHH--------Hhh--hCC-CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778 97 NNINRIIH--------QLN--VDN-LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES 165 (433)
Q Consensus 97 ~~~~~~~~--------~~~--~~~-~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~ 165 (433)
..+..... ... ..+ ..+|+++....+.... ... ..+|||++|++++.+|+.+| + ...+.+..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~---~~~-~~~i~l~~~~e~~~~Rl~~R-~--~~~~~~~~ 153 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTY---KNY-DKLIVVYAPYEVCKERAIKR-G--MSEEDFER 153 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCG---GGS-SEEEEECCCHHHHHHHHHHT-C--CCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCch---hhC-CEEEEEECCHHHHHHHHHHc-C--CCHHHHHH
Confidence 11111111 111 122 3556655433322111 111 47999999999999999988 3 33344444
Q ss_pred HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
.+..+.....+.+.++++|+++.+++++.++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 154 RWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEE 191 (204)
T ss_dssp HHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHT
T ss_pred HHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHH
Confidence 44443321111233578999989999999888776543
No 85
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.25 E-value=1e-11 Score=118.04 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=89.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------cccc--ccCCC-----------------CCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKM--SAKQP-----------------LND 89 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~--~~~~~-----------------~~~ 89 (433)
..++++|+|+|++||||||+++.|+ .+|+.++++|.+..... ...+ ..|.. |..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 4556899999999999999999999 58999999998732100 0000 00110 111
Q ss_pred cCChhHHH---------HHHHHHHHhhhCCC-cEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC
Q psy16778 90 EDRRPWLN---------NINRIIHQLNVDNL-TGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP 159 (433)
Q Consensus 90 ~~~~~~~~---------~~~~~~~~~~~~~~-~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~ 159 (433)
.....+++ .+...+......+. .+|+++....+. .+.... ..+|||++|++++.+|+.+|.+. .
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~~~-d~vI~l~a~~ev~~~Rl~~R~g~--s 224 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQSMV-HEVWTVVIPETEAVRRIVERDGL--S 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGGGC-SEEEEEECCHHHHHHHHHHHHCC--C
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHHhC-CEEEEEcCCHHHHHHHHHHcCCC--C
Confidence 00001010 11122222222333 344454432221 111222 48999999999999999998642 3
Q ss_pred HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+.+...+..+.....+.+.++++|+++.+++++..+|.+.+
T Consensus 225 ~e~~~~ri~~q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l 266 (281)
T 2f6r_A 225 EAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAW 266 (281)
T ss_dssp HHHHHHHHHTSCCHHHHHHTCSEEEECSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHhhHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 333333333331110001236789999899999988886654
No 86
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=99.24 E-value=4.1e-12 Score=125.62 Aligned_cols=133 Identities=29% Similarity=0.464 Sum_probs=101.2
Q ss_pred CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc---------
Q psy16778 290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD--------- 349 (433)
Q Consensus 290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~--------- 349 (433)
+..++|+.|+...+...|-|+..+.+++.+...++.+ |..+.+ ++.+.++|.+.+.
T Consensus 7 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~----f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~ 82 (380)
T 1p4c_A 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDV----FQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGL 82 (380)
T ss_dssp SHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred CHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHH----HhheeeeccccCCCccCcceeEECCeecCCceEecCccc
Confidence 4568899998877788999999999999987666555 555555 2234556654431
Q ss_pred --------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q psy16778 350 --------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 409 (433)
Q Consensus 350 --------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~ 409 (433)
.+..++. -+.+++|++... ++.+.|||+|+++ +..+.+++++|+++|+++++||||+|
T Consensus 83 ~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p 160 (380)
T 1p4c_A 83 NGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVA 160 (380)
T ss_dssp GGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCS
T ss_pred cccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCc
Confidence 0111111 134468998775 3457899999999 99999999999999999999999999
Q ss_pred CCCCchhhhhcCCCCCCCC
Q psy16778 410 VFGTRYADIRNKFNMPSHL 428 (433)
Q Consensus 410 ~~g~r~~~~r~~~~~~~~~ 428 (433)
+.|+|++|+|+++.+|..+
T Consensus 161 ~~g~r~~d~~~g~~~~~~~ 179 (380)
T 1p4c_A 161 VNGYRERDLHNRFKIPPFL 179 (380)
T ss_dssp SCCCCHHHHHHTCCCCTTC
T ss_pred cccchhHHHhcCCCCcccc
Confidence 9999999999999877543
No 87
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.24 E-value=2.7e-12 Score=133.41 Aligned_cols=159 Identities=15% Similarity=0.205 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
..++++|+|+|+|||||||+++.|+++++ +.++|+|.+... +..+..|........++.+..++..+..
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-----l~~~~~f~~~er~~~i~ri~~v~~~~~~ 467 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-----LSSELGFTREDRHTNIQRIAFVATELTR 467 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-----TCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-----hccccCCChhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999985 357777776432 2223344443334445555566667777
Q ss_pred CCCcEEEEcCcccHHHHH----HHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH---HhHHHHHhhccCCCCCCCCCe
Q psy16778 109 DNLTGVLVCSALRRNYRD----IIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA---DLLESQFQTLEEPDPLVEPDV 181 (433)
Q Consensus 109 ~~~~~Vi~~~~~~~~~~~----~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~---~~l~~~~~~~~~~~~~~~~~~ 181 (433)
++..+|++........|+ .+.+.+.+.+|||++|++++.+|..+.- ... ..++..... ..+++..+.++
T Consensus 468 ~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l---~~~~~~~~i~~~~~~-r~~~~~p~~~d 543 (573)
T 1m8p_A 468 AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI---YAAARRGEIKGFTGV-DDPYETPEKAD 543 (573)
T ss_dssp TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH---HHHHHTTSSSSCBTT-TBCCCCCSSCS
T ss_pred CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc---hhhhhHHHHHHHHhc-cccccccCCCC
Confidence 776666665443344443 3433212589999999999999952110 000 001111111 11221112467
Q ss_pred EEEccC-CCHHHHHHHHhcCCC
Q psy16778 182 RTVSVN-EPLEGIVSKSAIMPP 202 (433)
Q Consensus 182 ~~Id~~-~~~ee~~~~i~~~l~ 202 (433)
++||++ .++++++++|.+.+.
T Consensus 544 l~IDts~~s~eevv~~Il~~l~ 565 (573)
T 1m8p_A 544 LVVDFSKQSVRSIVHEIILVLE 565 (573)
T ss_dssp EEECTTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 999998 799999999987764
No 88
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=99.24 E-value=6.4e-12 Score=123.90 Aligned_cols=134 Identities=30% Similarity=0.499 Sum_probs=106.3
Q ss_pred CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc---------
Q psy16778 290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD--------- 349 (433)
Q Consensus 290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~--------- 349 (433)
+..++|+.|....+...|-|+..+.+++.+...++.+ |..+.+ ++.+.++|.+...
T Consensus 6 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~----f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~ 81 (370)
T 1gox_A 6 NVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNA----FSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 81 (370)
T ss_dssp STTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHH----HhhheeeccccCCCCCCCCceEECCcccCCceeEcccch
Confidence 6779999998887778899999999999997777655 555555 2335566654431
Q ss_pred --------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q psy16778 350 --------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 409 (433)
Q Consensus 350 --------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~ 409 (433)
.+..++. ..+.++|++.+..+ .+.|||||+..|+..+.+.+++|+++|+++|+||+|+|
T Consensus 82 ~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p 160 (370)
T 1gox_A 82 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCS
T ss_pred hhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 1111111 13557899988766 67899999999999999999999999999999999999
Q ss_pred CCCCchhhhhcCCCCCCCC
Q psy16778 410 VFGTRYADIRNKFNMPSHL 428 (433)
Q Consensus 410 ~~g~r~~~~r~~~~~~~~~ 428 (433)
+.|+|++|.|++|.+|.++
T Consensus 161 ~~g~r~~d~r~~~~~p~~~ 179 (370)
T 1gox_A 161 RLGRREADIKNRFVLPPFL 179 (370)
T ss_dssp SCCCCHHHHHTTCCCCTTC
T ss_pred cccccHHHHHhccCCCccc
Confidence 9999999999999988775
No 89
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.23 E-value=6.1e-11 Score=109.66 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=90.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC--------------------------
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL-------------------------- 87 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~-------------------------- 87 (433)
...++.+|+|+|++||||||+++.|++.+|++++|+|.+........+..|..+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence 346778999999999999999999999999999999988643111000111110
Q ss_pred ---------CCcCChhHHH-------------HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHH
Q psy16778 88 ---------NDEDRRPWLN-------------NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGV 145 (433)
Q Consensus 88 ---------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~ 145 (433)
..-.....+. .+..... ....+.++|+++..... ..+... ..+|||++++++
T Consensus 92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~-~~~~~~~~v~~g~~~~~---~~l~~~--d~vi~L~a~~e~ 165 (236)
T 1q3t_A 92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQ-EIAQQGGIVMDGRDIGT---VVLPQA--ELKIFLVASVDE 165 (236)
T ss_dssp EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHH-HHHTTSCEEEECSSCSS---SSGGGC--SEEEEEECCHHH
T ss_pred EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHH-HhcccCCEEEECCcchh---hhccCC--CEEEEEECCHHH
Confidence 0000001111 1111111 12344467776432110 112222 489999999999
Q ss_pred HHHHH----HHhhCCCCCHHhHHHHHhhc---------cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 146 ILSRL----QKRAEHFMPADLLESQFQTL---------EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 146 l~~Rl----~~R~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
+.+|+ .+|+ .....+.+...+..+ .+++ ...++++|+++ .+++++.++|.+.+
T Consensus 166 ~~~R~~~~~~~R~-~~~~~e~~~~~i~~R~~~~~~~~~~p~~--~~~d~~vId~~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 166 RAERRYKENIAKG-IETDLETLKKEIAARDYKDSHRETSPLK--QAEDAVYLDTTGLNIQEVVEKIKAEA 232 (236)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHTTCSSSCCS--CCTTCEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHHHHhhhhhhccccccc--ccCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 99997 3443 222333333333321 1232 33244999998 69999999887653
No 90
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.23 E-value=1.3e-11 Score=109.65 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCC--CCCCcC--ChhHHHHHHH----HH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQ--PLNDED--RRPWLNNINR----II 103 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~----~~ 103 (433)
++++|+|+|++||||||+++.|++++| +.+++.|++...... ..+. .+.+.. .......++. .+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK---EENLVSDRDQMRKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH---HTTSCSSGGGGSSCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh---ccCCCCCHHHHhcCCHHHHHHHHHHHHHHH
Confidence 367999999999999999999999998 999998866432110 0111 111100 1111222222 23
Q ss_pred HHhhhCCCcEEEEcCccc--H-HH-----HHHHHhcCCeEEEEEEcCHHHHHH-HHHH--hhCCCCCHHhHH------HH
Q psy16778 104 HQLNVDNLTGVLVCSALR--R-NY-----RDIIRNNNRVVFIYLKAEFGVILS-RLQK--RAEHFMPADLLE------SQ 166 (433)
Q Consensus 104 ~~~~~~~~~~Vi~~~~~~--~-~~-----~~~l~~~~~~~vv~L~~~~e~l~~-Rl~~--R~~~~~~~~~l~------~~ 166 (433)
... ..+..+|+++.... . .+ ...+++....++|||++|++++.+ |+.+ |+......+.+. ..
T Consensus 79 ~~~-~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~ 157 (192)
T 1kht_A 79 AEM-AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRC 157 (192)
T ss_dssp HHH-HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHH
T ss_pred Hhh-ccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHH
Confidence 232 24457888765421 0 00 122333212469999999999996 9977 643223322211 11
Q ss_pred HhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcC
Q psy16778 167 FQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIM 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~ 200 (433)
+......+ .....++|++. .+++++++.|.+.
T Consensus 158 ~~~~~~~~--~~~~~~~i~~~~~~~e~~~~~i~~~ 190 (192)
T 1kht_A 158 AAMSYGVL--TGATVKIVQNRNGLLDQAVEELTNV 190 (192)
T ss_dssp HHHHHHHH--HCCEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 11111111 11234555443 5699999988654
No 91
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.23 E-value=2e-11 Score=111.29 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc----ccc--------------------------ccCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----DKM--------------------------SAKQP 86 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~----~~~--------------------------~~~~~ 86 (433)
++++|+|+|++||||||+++.|++.+|+.++|.|.+.+...+ .+. ..|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 357899999999999999999999999999999988642100 000 01111
Q ss_pred CCCcCChhHHHH----------HHHHHH---HhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778 87 LNDEDRRPWLNN----------INRIIH---QLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 87 ~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R 153 (433)
.........+.. +.+.+. .....+.++|+++.... ...+... ..+|||++|++++.+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~---~~~~~~~--~~vi~l~a~~e~~~~R~~~~ 156 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG---TVVLPDA--DLKVYMIASVEERAERRYKD 156 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC---CCCCTTC--SEEEEEECCHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc---ceecCCC--CEEEEEECCHHHHHHHHHHH
Confidence 101011111110 111111 12234446777753210 0112222 47999999999999997532
Q ss_pred ---hCCCCCHHhHHHHHhhcc---------CCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778 154 ---AEHFMPADLLESQFQTLE---------EPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP 201 (433)
Q Consensus 154 ---~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l 201 (433)
++.....+.+...+..++ +.+ ...++++|+++ .++++++++|.+.+
T Consensus 157 ~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~--~~~d~~~Id~~~~~~ee~~~~I~~~l 215 (219)
T 2h92_A 157 NQLRGIESNFEDLKRDIEARDQYDMNREISPLR--KADDAVTLDTTGKSIEEVTDEILAMV 215 (219)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC--CCTTCEEEECTTCCHHHHHHHHHHHH
T ss_pred HHhcCcccCHHHHHHHHHHHHHhhhhhhccccc--cCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 222224444444444332 332 33345999998 69999999987654
No 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.22 E-value=4.8e-11 Score=111.63 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=78.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccc---cccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNI---DKMSAKQPLNDEDRRPWLNNINRIIHQLNV 108 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (433)
...++.+|+|+|+|||||||+++.|++.++ +.++++|.+...... .....|............+.+...+..+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS 107 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence 466789999999999999999999999986 678999987532110 001112211110000011223444555566
Q ss_pred CCCcEEEEcCccc----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 109 DNLTGVLVCSALR----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 109 ~~~~~Vi~~~~~~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
.+.++||+++... ..+.+.+++.+. ..++|+.+|++++.+|+.+|.
T Consensus 108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 7778999987643 334556665543 556788999999999998874
No 93
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.20 E-value=5e-12 Score=113.67 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=87.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc-c--cccccCC--CCC-CcCChhHH-----------HH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN-I--DKMSAKQ--PLN-DEDRRPWL-----------NN 98 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~-~--~~~~~~~--~~~-~~~~~~~~-----------~~ 98 (433)
+++++|+|+|++||||||+++.|++. |++++|+|.+..... . ......+ .+. ..-....+ ..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 45689999999999999999999998 999999998753211 0 0000000 000 00000000 11
Q ss_pred HHH---------HHHHhhhCCCcEEEEcCcc-cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778 99 INR---------IIHQLNVDNLTGVLVCSAL-RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ 168 (433)
Q Consensus 99 ~~~---------~~~~~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~ 168 (433)
++. .+......|..+||..+.. .+.. +.... ..+|||+++++++.+|+.+|.+. ..+.+...+.
T Consensus 85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~~---~~~~~-d~~i~l~~~~e~~~~R~~~R~~~--~~~~~~~~i~ 158 (203)
T 1uf9_A 85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG---WEGRL-HGTLLVAAPLEERVRRVMARSGL--SREEVLARER 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT---CGGGS-SEEEEECCCHHHHHHHHHTTTCC--TTHHHHHHHT
T ss_pred HHHHhChHHHHHHHHHhhhcCCCEEEEEecceeccC---chhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 111 1111112333444444432 2211 11111 48999999999999999988532 2222333332
Q ss_pred hccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 169 TLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
.+...+.+...++++|+++.+++++.++|.+.+.
T Consensus 159 ~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 159 AQMPEEEKRKRATWVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp TSCCHHHHHHHCSEEECCSSHHHHHHHHHHHHHH
T ss_pred HCCChhHHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 2211110012256889988889999888876653
No 94
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.19 E-value=2.2e-11 Score=109.48 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHH---HHH---HHHHHhhhCCCc
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---NIN---RIIHQLNVDNLT 112 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~ 112 (433)
++|+|+|++||||||+++.|+++++..+++.... ...... .+ +.+.....+.. ... ..+.....++ .
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~ 73 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVE-ENPYFE----QY-YKDLKKTVFKMQIYMLTARSKQLKQAKNLE-N 73 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGG-GCTTHH----HH-TTCHHHHHHHHHHHHHHHHHHHHC-------C
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEccccc-ccHHHH----HH-HhCccccchhHHHHHHHHHHHHHHHhhccC-C
Confidence 4799999999999999999999999987752110 000000 00 11111111110 111 1122223344 4
Q ss_pred EEEEcCcccH-------------------HHHHHHH----hc-------CC-eEEEEEEcCHHHHHHHHHHhhCCCCC--
Q psy16778 113 GVLVCSALRR-------------------NYRDIIR----NN-------NR-VVFIYLKAEFGVILSRLQKRAEHFMP-- 159 (433)
Q Consensus 113 ~Vi~~~~~~~-------------------~~~~~l~----~~-------~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~-- 159 (433)
+|++.+.... .+.+.+. .. .. ..+|||++|++++.+|+.+|+ ++..
T Consensus 74 vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~-r~~~~~ 152 (205)
T 2jaq_A 74 IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG-RSEELL 152 (205)
T ss_dssp EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT-CHHHHH
T ss_pred EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC-Chhhhc
Confidence 7777654211 0111111 11 12 689999999999999998874 2211
Q ss_pred -----HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 160 -----ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 160 -----~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
...+..++..+.+.+. ...++++|+++.+++++.++|.+.+
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~Id~~~~~~~v~~~I~~~l 198 (205)
T 2jaq_A 153 IGEEYWETLNKNYEEFYKQNV-YDFPFFVVDAELDVKTQIELIMNKL 198 (205)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-TTSCEEEEETTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcc-ccCcEEEEECCCCHHHHHHHHHHHH
Confidence 1223334443322221 1347899999999999999887655
No 95
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.19 E-value=2e-10 Score=105.75 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-------HH---HHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-------NI---NRI 102 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~ 102 (433)
+.+|+.|+|.|++||||||+++.|++.++ ..++.+..-.......... .+..+.....+... +. .+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~-~~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 101 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIR-KIVLEGNDMDIRTEAMLFAASRREHLVLK 101 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHH-HHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999986 4555443221110000000 01111000001100 11 111
Q ss_pred HHHhhhCCCcEEEE----------cCc--ccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCC---CC--CH
Q psy16778 103 IHQLNVDNLTGVLV----------CSA--LRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEH---FM--PA 160 (433)
Q Consensus 103 ~~~~~~~~~~~Vi~----------~~~--~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~---~~--~~ 160 (433)
+...+..+..+|++ +.+ ....+.+.+.+. .. ..+|||++|++++.+|+.+|+.. .. ..
T Consensus 102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~ 181 (229)
T 4eaq_A 102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDL 181 (229)
T ss_dssp CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHH
T ss_pred HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhH
Confidence 23445567667777 332 334443333321 12 78999999999999999998532 11 11
Q ss_pred HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.+++..+.+.++........++||++.+++++.++|.+.+
T Consensus 182 ~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l 222 (229)
T 4eaq_A 182 KFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTI 222 (229)
T ss_dssp HHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 22233323232222111235688999999999999887654
No 96
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.19 E-value=3e-12 Score=130.93 Aligned_cols=142 Identities=28% Similarity=0.416 Sum_probs=107.3
Q ss_pred CCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCcccc-
Q psy16778 281 GGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYA- 348 (433)
Q Consensus 281 g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~- 348 (433)
..|-+....+..+||++|....+...|-|+....++|.+...++.+ |..+.+ ++.+.++|.+..
T Consensus 115 ~~p~~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~a----f~~i~l~pr~L~dv~~~d~st~i~G~~l~~ 190 (511)
T 1kbi_A 115 LLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNA----YHRIFFKPKILVDVRKVDISTDMLGSHVDV 190 (511)
T ss_dssp TCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGCEECCCCSCCCSSCBCCEEETTEEESS
T ss_pred CCCCccccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHH----hhhhccccccccCcccccCccccCCccCCC
Confidence 3444333456778999998877778999999999999987777655 444444 233555554332
Q ss_pred -----------------------ccccc--cCCC------ccchHHHHHhhC--CCcchhhhhhccCCHHHHHHHHHHHH
Q psy16778 349 -----------------------DIRNK--FNMP------SHLNIEELAEKT--PQTTKWFQLYIYRDREITKSLVQRAE 395 (433)
Q Consensus 349 -----------------------~~~~~--~~~~------~~~s~e~i~~~~--~~~~~w~Qly~~~~~~~~~~~~~ra~ 395 (433)
..+.. ++++ ++.|+|++.+.. +..+.|||||+.+|+..+.+.++||+
T Consensus 191 Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae 270 (511)
T 1kbi_A 191 PFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVE 270 (511)
T ss_dssp SEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHH
T ss_pred CeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHH
Confidence 11122 3332 356899998765 35678999999999999999999999
Q ss_pred HcCCcEEEEecCCCCCCCchhhhhcCCCCCC
Q psy16778 396 KAGYKALVLTVDTNVFGTRYADIRNKFNMPS 426 (433)
Q Consensus 396 ~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~ 426 (433)
++||++|+||||+|+.|+|+++.|++|..|.
T Consensus 271 ~aG~~al~itvd~p~~g~R~~~~r~g~~~p~ 301 (511)
T 1kbi_A 271 KLGVKALFVTVDAPSLGQREKDMKLKFSNTK 301 (511)
T ss_dssp HHTCSCEEEECSCSSCCCCHHHHHHHHTTCC
T ss_pred HcCCCEEEEeCCCCCccccHHHHhccCCCCc
Confidence 9999999999999999999999999988774
No 97
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.16 E-value=1.5e-10 Score=104.06 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCc-cccc---cc-cccCCCCCCcCChhHH---HHH--HHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHP-QSNI---DK-MSAKQPLNDEDRRPWL---NNI--NRIIH 104 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~-~~~~---~~-~~~~~~~~~~~~~~~~---~~~--~~~~~ 104 (433)
++|++|+|+|++||||||+++.|++++ |+.+++.+.... .... .. ...+..+.... ...+ ... ...+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-~~~l~~~~r~~~~~~i~ 80 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHI-VNLLFCANRWEFASFIQ 80 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHH-HHHHHHHHHHTTHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999998 688888765431 1100 00 00111111100 0000 000 02234
Q ss_pred HhhhCCCcEEEEcCc-----------ccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC-CCCHH---hHHHHH
Q psy16778 105 QLNVDNLTGVLVCSA-----------LRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH-FMPAD---LLESQF 167 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~-----------~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~---~l~~~~ 167 (433)
..+..+..+|++... ....+...+.... . ..+|||++|++++.+ +|+.. ....+ .+...+
T Consensus 81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e~~~~~~rl~~~y 157 (204)
T 2v54_A 81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYEDVTFQQKVLQEY 157 (204)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTCCSHHHHHHHHHH
T ss_pred HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcccccHHHHHHHHHHHH
Confidence 444566566666432 1123333333221 1 689999999999887 45321 11112 233334
Q ss_pred hhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 168 QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
......+ ....++||++.+++++.++|.+.+
T Consensus 158 ~~~~~~~---~~~~~~Id~~~~~~~v~~~i~~~l 188 (204)
T 2v54_A 158 KKMIEEG---DIHWQIISSEFEEDVKKELIKNIV 188 (204)
T ss_dssp HHHHTTC---SSCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhC---CCcEEEEECCCCHHHHHHHHHHHH
Confidence 4333322 125688998899999998887665
No 98
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.16 E-value=1.2e-10 Score=105.08 Aligned_cols=161 Identities=12% Similarity=0.103 Sum_probs=85.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-eEEeCCCCCccccccccccC--CCCCCc-----------------CCh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV-KFIDGDHLHPQSNIDKMSAK--QPLNDE-----------------DRR 93 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~-~~id~D~~~~~~~~~~~~~~--~~~~~~-----------------~~~ 93 (433)
.+.++++|+|+|+|||||||+++.|++.++- .........++... ....| +.|-.. ...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~-~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE-KETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN 86 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT-TCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC-CCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence 3778899999999999999999999998842 22222111111000 00000 000000 000
Q ss_pred hHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC---CeEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778 94 PWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN---RVVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQT 169 (433)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~---~~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~ 169 (433)
..+....+.+...+..|..+|+++.... .+ .+++.. ...+|||+ +|++++.+|+.+|+.. ..+.+...+..
T Consensus 87 ~~~~~~~~~i~~~l~~g~~vi~d~~~~~--~~-~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~--~~~~i~~rl~~ 161 (204)
T 2qor_A 87 NFYGTLKSEYDLAVGEGKICLFEMNING--VK-QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE--KPEEINKRMQE 161 (204)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCHHH--HH-HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS--CHHHHHHHHHH
T ss_pred CeecCCHHHHHHHHHcCCeEEEEECHHH--HH-HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 0000011234455567878888875421 22 233322 24789998 9999999999988642 22333322221
Q ss_pred -ccCCCC-CCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 170 -LEEPDP-LVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 170 -~~~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.+... +...++++|+++ +++++.++|...+
T Consensus 162 ~~~~~~~~~~~~~d~vi~n~-~~e~~~~~i~~~i 194 (204)
T 2qor_A 162 LTREMDEADKVGFNYFIVND-DLARTYAELREYL 194 (204)
T ss_dssp HHHHHHHHHHHTCSEEEECS-SHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcEEEECc-CHHHHHHHHHHHH
Confidence 111100 012245667666 8888888876654
No 99
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=1.9e-10 Score=102.36 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-CeEEeCCCCCccccccccccCCCCCCcCCh---hHHHHHHHHHHHhhhCCCcE
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLG-VKFIDGDHLHPQSNIDKMSAKQPLNDEDRR---PWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg-~~~id~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 113 (433)
|.+|+|+|+|||||||+++.|++.++ ..++++|++.... ..+..++..... ..++.+...+......+..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 76 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-----VGGYRPPWESDELLALTWKNITDLTVNFLLAQNDV 76 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-----CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-----ccccccCccchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 57899999999999999999999775 4889988774321 223333222111 12223333333344456677
Q ss_pred EEEcCccc---HHHHHHHHhcC-C--eEEEEEEcCHHHHHHHHHHhhCC-CCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778 114 VLVCSALR---RNYRDIIRNNN-R--VVFIYLKAEFGVILSRLQKRAEH-FMPADLLESQFQTLEEPDPLVEPDVRTVSV 186 (433)
Q Consensus 114 Vi~~~~~~---~~~~~~l~~~~-~--~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~ 186 (433)
|++..... ..+++.++... . ..+++|.++++++.+|+..|... ..+...... ++.+..++. ....+|++
T Consensus 77 ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~---~~~~ii~t 152 (189)
T 2bdt_A 77 VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGI---DERYFYNT 152 (189)
T ss_dssp EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTC---CTTSEEEC
T ss_pred EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCC---CccEEEeC
Confidence 78764221 22233332111 1 46789999999999999887532 122333344 445544432 14467777
Q ss_pred C-C---CHHHHHHHHh
Q psy16778 187 N-E---PLEGIVSKSA 198 (433)
Q Consensus 187 ~-~---~~ee~~~~i~ 198 (433)
+ . +++++.+.|.
T Consensus 153 sh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 153 SHLQPTNLNDIVKNLK 168 (189)
T ss_dssp SSSCGGGHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHh
Confidence 6 5 7788888876
No 100
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.14 E-value=4.1e-10 Score=105.26 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc--------ccccC-----CCCCCc----CC-hhHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID--------KMSAK-----QPLNDE----DR-RPWLNNIN 100 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~--------~~~~~-----~~~~~~----~~-~~~~~~~~ 100 (433)
++|+|+|++||||||+++.|++.++..++++|.+....... ....+ +.+... .. ..+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 47999999999999999999999999999999974221110 00001 111111 11 22333444
Q ss_pred HHHHHhhhCCCcEEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCH-HHHHHHHHHhhCC-----CCCHHhHHHHHhh
Q psy16778 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEF-GVILSRLQKRAEH-----FMPADLLESQFQT 169 (433)
Q Consensus 101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~-e~l~~Rl~~R~~~-----~~~~~~l~~~~~~ 169 (433)
..+ .....+..+|++++.. ...+..+.. ..- ..++||+++. +++.+|+.+|... +...+.++.+...
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~-~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~~ 159 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSI-SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAEL 159 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCH-HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHH-HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHHh
Confidence 445 5556676777776542 333444444 211 4789999997 9999999998632 1223556666666
Q ss_pred ccCCC
Q psy16778 170 LEEPD 174 (433)
Q Consensus 170 ~~~~~ 174 (433)
++.+.
T Consensus 160 ~~~p~ 164 (253)
T 2ze6_A 160 WNYPA 164 (253)
T ss_dssp HTSTT
T ss_pred cCCcc
Confidence 66654
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.09 E-value=2.4e-10 Score=102.89 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=70.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCC-CCccccccccccCCCCCCcCChhHHH--------------
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDH-LHPQSNIDKMSAKQPLNDEDRRPWLN-------------- 97 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 97 (433)
++.+|++|+|+|++||||||+++.|++.+ ....+.... ............++.|++......+.
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGN 81 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCe
Confidence 35678999999999999999999999976 211111111 11110000011233333321111110
Q ss_pred ---HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-CeEEEEEE-cCHHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778 98 ---NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLK-AEFGVILSRLQKRAEHFMP--ADLLESQFQTL 170 (433)
Q Consensus 98 ---~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~~~vv~L~-~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~ 170 (433)
...+.+...+..+..+|++........ +++.. ...++++. ++++++.+|+.+|+..... ...+..++...
T Consensus 82 ~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~ 158 (207)
T 2j41_A 82 YYGTPVQYVKDTMDEGHDVFLEIEVEGAKQ---VRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEV 158 (207)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHH---HHHHCTTSEEEEEECCC---------------------------CGG
T ss_pred ecCCCHHHHHHHHHcCCeEEEEECHHHHHH---HHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 012334444556777888876543322 22222 23455555 6789999999988632211 11222222222
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP 202 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~ 202 (433)
+. ...++++|+++ +++++.++|.+.+.
T Consensus 159 ~~----~~~~d~vI~n~-~~e~~~~~i~~~l~ 185 (207)
T 2j41_A 159 EM----MNLYDYVVVND-EVELAKNRIQCIVE 185 (207)
T ss_dssp GG----GGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred hc----cccCCEEEECC-CHHHHHHHHHHHHH
Confidence 11 12355777777 89999998877653
No 102
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.08 E-value=1.8e-10 Score=102.46 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=93.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHH---HHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRI---IHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 109 (433)
+.+|.+|+|+|+|||||||+++.|++.++ ..++++|++..... .....++.++... ......++. .......
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~ 82 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKE 82 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC-SSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhh-cccccCCccchhh--hhHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999764 45888887643211 1111233333211 122222222 1222234
Q ss_pred CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778 110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFM-PADLLESQFQTLEEPDPLVEPDVRTVSVN 187 (433)
Q Consensus 110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~Id~~ 187 (433)
+..++++... .....+.+..... ..++++.++.+++..|+..|..... ..+.....++.+.+.+. .++++|+++
T Consensus 83 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~---~~~~~i~t~ 158 (191)
T 1zp6_A 83 GYFVILDGVV-RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGA---FEHHVLPVS 158 (191)
T ss_dssp SCEEEECSCC-CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGG---GGGGEEECT
T ss_pred CCeEEEeccC-cHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCc---ccccEEECC
Confidence 4445555421 1112233332111 4689999999999999988853322 34555555666665542 245778776
Q ss_pred -CCHHHHHHHHhcCC
Q psy16778 188 -EPLEGIVSKSAIMP 201 (433)
Q Consensus 188 -~~~ee~~~~i~~~l 201 (433)
.+++++.+.|.+.+
T Consensus 159 ~~~~~~~~~~i~~~l 173 (191)
T 1zp6_A 159 GKDTDQALQSAINAL 173 (191)
T ss_dssp TCCTTTTTTTTHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 67777766665544
No 103
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.08 E-value=4.5e-10 Score=103.34 Aligned_cols=173 Identities=14% Similarity=0.070 Sum_probs=72.8
Q ss_pred eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH-HHhCCeEEeCCCCCccccccccccC--CCCCCcCChhHH
Q psy16778 20 VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLA-TRLGVKFIDGDHLHPQSNIDKMSAK--QPLNDEDRRPWL 96 (433)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La-~~lg~~~id~D~~~~~~~~~~~~~~--~~~~~~~~~~~~ 96 (433)
..+++-+-..+.++++.+|.+|+|+|++||||||+++.|+ +.+.. ++............+...| +.+........+
T Consensus 9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87 (231)
T ss_dssp -------------CCEECCCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEecHHHhhhh
Confidence 3445545556788999999999999999999999999999 87643 2322222111000000112 222211111110
Q ss_pred HHH-----------------HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEE-EcCHHHHHHHHHHhhCC
Q psy16778 97 NNI-----------------NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYL-KAEFGVILSRLQKRAEH 156 (433)
Q Consensus 97 ~~~-----------------~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L-~~~~e~l~~Rl~~R~~~ 156 (433)
... ...+......+..+|++...... ..+++.. . ...||+ .++.+++.+|+.+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~---~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~ 164 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGA---FKFMEMMREHVVSIFIMPPSMEELRRRLCGRRAD 164 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHH---HHHHHHSGGGEEEEEEECSCHHHHHHC-------
T ss_pred hhcCceehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHH---HHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCC
Confidence 000 01133334456667776542111 1122222 2 355665 55799999999988532
Q ss_pred CCC--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 157 FMP--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 157 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
... ...+..+....+.. ..++++|+++ +++++.+++.+.+
T Consensus 165 ~~~~i~~rl~~~~~~~~~~----~~~d~vI~n~-~~e~~~~~l~~~i 206 (231)
T 3lnc_A 165 DSEVVEARLKGAAFEISHC----EAYDYVIVNE-DIEETADRISNIL 206 (231)
T ss_dssp -------CHHHHHHHHTTG----GGSSEEEECS-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhh----cCCeEEEECc-CHHHHHHHHHHHH
Confidence 111 22344444443322 2366778776 7888888876655
No 104
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.06 E-value=8.4e-11 Score=107.86 Aligned_cols=174 Identities=12% Similarity=0.084 Sum_probs=90.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCCCcccc---ccc-cccCCCCCCcCCh--
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHLHPQSN---IDK-MSAKQPLNDEDRR-- 93 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~~~~~~---~~~-~~~~~~~~~~~~~-- 93 (433)
+...-+.++.+|+.|+|.|++||||||+++.|++.+ |..++-+..-..... +.. +..+ .+......
T Consensus 14 ~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~~~~~ll 92 (227)
T 3v9p_A 14 AQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDLETEALL 92 (227)
T ss_dssp ---------CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCHHHHHHH
T ss_pred HHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC-CCCHHHHHHH
Confidence 333444567889999999999999999999999988 444432221110000 000 0011 11111000
Q ss_pred ---hHHHHHHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHh
Q psy16778 94 ---PWLNNINRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R 153 (433)
..+..+.+.+...+..|..+|.|-. +....+...+... .. +++|||++|++++.+|+.+|
T Consensus 93 f~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R 172 (227)
T 3v9p_A 93 MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAV 172 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1111234456667778876666621 1223444434321 12 79999999999999999988
Q ss_pred hC--CCCC--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 154 AE--HFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 154 ~~--~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
++ +... .+.+++..+.+..+........++||.+.+++++.++|.+.+
T Consensus 173 ~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l 224 (227)
T 3v9p_A 173 RMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVL 224 (227)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred cCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence 52 2222 223333333332221101124689999999999999887543
No 105
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.06 E-value=6.8e-10 Score=100.94 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccc-cccCC--CCCCcCCh-----hHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDK-MSAKQ--PLNDEDRR-----PWLNNINR 101 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~-~~~~~--~~~~~~~~-----~~~~~~~~ 101 (433)
.+|+.|+|.|++||||||+++.|++.+ |+.++.+..-..... ... +..+. .+...... .....+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~ 83 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG 83 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999988 555554432211100 000 01110 11110000 00112345
Q ss_pred HHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhC--CCCC--H
Q psy16778 102 IIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAE--HFMP--A 160 (433)
Q Consensus 102 ~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~~--~ 160 (433)
.+...+..|..+|.|-. +....+...+... .. +++|||++|++++.+|+.+|++ +... .
T Consensus 84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~ 163 (213)
T 4edh_A 84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR 163 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCH
T ss_pred HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHH
Confidence 56667778876676621 1223444444321 12 7999999999999999998853 2221 2
Q ss_pred HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+.++...+.+..+........++||.+.+++++.++|.+.+
T Consensus 164 ~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l 204 (213)
T 4edh_A 164 RFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLL 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 33333333332221001124789999999999999887654
No 106
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.05 E-value=6.2e-10 Score=106.00 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCcccccc-ccccCCCC-CCcCChhHHHH-HHHHHHHhhhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNID-KMSAKQPL-NDEDRRPWLNN-INRIIHQLNVD 109 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 109 (433)
..++.+|+|+|+|||||||+++.|++.+ ++.+|+.|.+....... .+...+.. .......++.. ....+...+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~ 109 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ 109 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999998 88999998875321100 00000000 00001123333 33455566677
Q ss_pred CCcEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHH----HHHHHHh
Q psy16778 110 NLTGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVI----LSRLQKR 153 (433)
Q Consensus 110 ~~~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l----~~Rl~~R 153 (433)
|.++|++++.... .+++.+++.+. ..++++.+|++++ .+|+.+|
T Consensus 110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 8899999876443 34445555433 4578999999999 8888766
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.03 E-value=7.4e-10 Score=102.93 Aligned_cols=176 Identities=15% Similarity=0.103 Sum_probs=86.5
Q ss_pred eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe----------EEeCCCCCccccccc---ccc-CCCC
Q psy16778 22 TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVK----------FIDGDHLHPQSNIDK---MSA-KQPL 87 (433)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~----------~id~D~~~~~~~~~~---~~~-~~~~ 87 (433)
+-....++++++++.+|.+|+|+|++||||||+++.|++.+|.. +++.|.+........ ... .+.+
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~ 88 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNF 88 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCT
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCC
Confidence 33445788999999999999999999999999999999988865 677776543211111 011 1223
Q ss_pred CCcCChhHHHHHHHHHHHhh-----------------------h-CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCH
Q psy16778 88 NDEDRRPWLNNINRIIHQLN-----------------------V-DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEF 143 (433)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~ 143 (433)
..+.... ...+.+.+..+. . ....+|++..-.. ....+.+.. ..+|++.++.
T Consensus 89 ~~~~~~~-~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~--~~~~l~~~~-~~~i~v~th~ 164 (245)
T 2jeo_A 89 DHPDAFD-NDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVF--YSQEIRDMF-HLRLFVDTDS 164 (245)
T ss_dssp TSGGGBC-HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTT--TSHHHHTTC-SEEEEEECCH
T ss_pred CCccccc-HHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCcccc--ccHHHHHhc-CeEEEEECCH
Confidence 2221111 111222222110 0 1123444432211 111233332 4789999998
Q ss_pred HHHHHHHHHhhC-CCCCHHhHHHHHhh--------ccCCCCCCCCCeEEE----ccCCCHHHHHHHHhcCCCC
Q psy16778 144 GVILSRLQKRAE-HFMPADLLESQFQT--------LEEPDPLVEPDVRTV----SVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 144 e~l~~Rl~~R~~-~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~I----d~~~~~ee~~~~i~~~l~~ 203 (433)
+....|...|.- .-...+.+..++.. +..+. ++.++++| +++.+++++.+++.+.+..
T Consensus 165 ~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~--~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 165 DVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPT--KKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGG--GGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcc--hhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 777766655531 01123333333322 11222 34577888 6667888888888776544
No 108
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.00 E-value=1.3e-09 Score=98.71 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH---------------
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN--------------- 98 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 98 (433)
++|.+|+|+||+||||||+++.|++.+. +.+........... +...|..+.......+...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~--~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~ 83 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPRE--GEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGN 83 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcC--cccCCceeEEecHHHHHHHHhcCcEEEEEEEccc
Confidence 5688999999999999999999999874 33322222111110 0011222211111111110
Q ss_pred ----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778 99 ----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMP--ADLLESQFQTL 170 (433)
Q Consensus 99 ----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~ 170 (433)
....+...+..|..+|++..... ...+++... ..+||+..+ .+++.+|+.+|+..... ...+.......
T Consensus 84 ~yg~~~~~i~~~l~~g~~vild~~~~g---~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~ 160 (208)
T 3tau_A 84 YYGTPLEYVEEKLAAGVDIFLEIEVQG---AMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI 160 (208)
T ss_dssp EEEEEHHHHHHHHHTTCCEEEECCHHH---HHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCCeEEEEeeHHH---HHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 01334556677888888764311 122333323 466777655 99999999999642211 11222222221
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
... . ..+++|.++ +.++...++...+
T Consensus 161 ~~~---~-~~d~vivN~-~~~~~~~~l~~~i 186 (208)
T 3tau_A 161 EMM---A-SYDYAVVND-VVANAVQKIKGIV 186 (208)
T ss_dssp HHG---G-GSSEEEECS-SHHHHHHHHHHHH
T ss_pred Hhh---c-cCCEEEECc-CHHHHHHHHHHHH
Confidence 111 1 134556554 5888888876655
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.98 E-value=2e-09 Score=95.53 Aligned_cols=156 Identities=14% Similarity=0.107 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC----CeEEeCCCCCccccccccccCCCCCCcCChhHHH----------------
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLG----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---------------- 97 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 97 (433)
|.+++|+|++||||||+++.|++.+. ..+..+........ ....++.+........+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge--~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~y 78 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYY 78 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTC--CBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCc--cCCeeeeecCHHHHHHHHhhcceeeEEEEeceec
Confidence 46799999999999999999998763 22222222111100 001112222111111000
Q ss_pred -HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHh-cCC-eEEEEEEcCH-HHHHHHHHHhhCCCCC--HHhHHHHHhhcc
Q psy16778 98 -NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRN-NNR-VVFIYLKAEF-GVILSRLQKRAEHFMP--ADLLESQFQTLE 171 (433)
Q Consensus 98 -~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~-~~~-~~vv~L~~~~-e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~ 171 (433)
.-...+...+..+..+|++... .-...+++ ... ..+||+.+|. +++.+|+.+|+..... ...+.......+
T Consensus 79 g~~~~~i~~~l~~g~~~il~~~~---~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~ 155 (186)
T 3a00_A 79 GSTVASVKQVSKSGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELA 155 (186)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCC------------------------------
T ss_pred cCcHHHHHHHHHcCCeEEEEEcH---HHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 0013355556678788887653 11222444 222 5789999965 9999999999743211 112222222222
Q ss_pred CCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+ ....+++|.++ +.++...++...+
T Consensus 156 ~~~--~~~~d~vi~nd-~~~~a~~~l~~~i 182 (186)
T 3a00_A 156 YAE--TGAHDKVIVND-DLDKAYKELKDFI 182 (186)
T ss_dssp -----CCCCSEEEECS-SHHHHHHHHHHHH
T ss_pred hhc--ccCCcEEEECc-CHHHHHHHHHHHH
Confidence 111 12356777776 7888887776654
No 110
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.98 E-value=5e-09 Score=100.91 Aligned_cols=117 Identities=17% Similarity=0.273 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc--------cccccCC-----C---C-CCcCC-hhHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI--------DKMSAKQ-----P---L-NDEDR-RPWLNN 98 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~--------~~~~~~~-----~---~-~~~~~-~~~~~~ 98 (433)
++.+|+|+||+|||||||+..||++++..+|++|.+.-.... .....|. . + .+... ..|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 446899999999999999999999999999999988311000 0001122 1 1 11122 233444
Q ss_pred HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHh---------------------cCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778 99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRN---------------------NNR-VVFIYLKAEFGVILSRLQKRA 154 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~---------------------~~~-~~vv~L~~~~e~l~~Rl~~R~ 154 (433)
....+......++.+|+.+|. .-.....+.. ... ..+|||+++.++|.+|+.+|.
T Consensus 119 a~~~i~~i~~~g~~pIlvGGt-glYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~ 195 (339)
T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGS-NSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV 195 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCC-HHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEcCH-HHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence 445555655666555554443 2222222221 111 678999999999999999885
No 111
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.95 E-value=3.7e-09 Score=97.47 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=87.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCe-EEeCCCCCccc---cccc-cccC---CCCCCcCCh-----hHHH
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---GVK-FIDGDHLHPQS---NIDK-MSAK---QPLNDEDRR-----PWLN 97 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~-~id~D~~~~~~---~~~~-~~~~---~~~~~~~~~-----~~~~ 97 (433)
...+|..|+|.|++||||||+++.|++.+ |+. .+-+..-.... .... +..+ ..+...... ....
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 34568899999999999999999999988 444 22221111000 0000 0000 001110010 0112
Q ss_pred HHHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhC--CCC
Q psy16778 98 NINRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAE--HFM 158 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~ 158 (433)
.+.+.+...+..|..+|.|-. +....+...+.+ ... +++|||++|++++.+|+.+|+. +..
T Consensus 103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E 182 (236)
T 3lv8_A 103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIE 182 (236)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTT
T ss_pred HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence 334556677778876776621 122334333332 112 7999999999999999998863 222
Q ss_pred C--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 159 P--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 159 ~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
. .+.+++..+.+..+.. ..+..++||++.+++++.++|.+.+
T Consensus 183 ~~~~~~~~rv~~~y~~la~-~~~~~~vIDa~~sieeV~~~I~~~l 226 (236)
T 3lv8_A 183 KMDISFFERARERYLELAN-SDDSVVMIDAAQSIEQVTADIRRAL 226 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHH-HCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 1 2333333333322221 1113789999999999998887654
No 112
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.94 E-value=4.9e-09 Score=95.16 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC-eEEeCCCCCccc---cccccccC------CCCCCcCCh-----hHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GV-KFIDGDHLHPQS---NIDKMSAK------QPLNDEDRR-----PWLNN 98 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~-~~id~D~~~~~~---~~~~~~~~------~~~~~~~~~-----~~~~~ 98 (433)
+|..|+|.|++||||||+++.|++.+ |+ .++-+..-.... .+...-.+ ..+...... .....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~ 81 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL 81 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence 57899999999999999999999988 55 322221110000 00010000 111110000 01123
Q ss_pred HHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhC--CCC-
Q psy16778 99 INRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAE--HFM- 158 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~- 158 (433)
+++.+...+..|..+|.|-. +....+...+... .. +++|||++|+++..+|+.+|++ +..
T Consensus 82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~ 161 (213)
T 4tmk_A 82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ 161 (213)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh
Confidence 44567777888876666621 1224444333321 12 7999999999999999999864 222
Q ss_pred -CHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 159 -PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 159 -~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
..+.++...+.+..+.. .....++||.+.+++++.++|.+.+
T Consensus 162 ~~~~f~~rv~~~y~~la~-~~~~~~vIDa~~s~eeV~~~I~~~l 204 (213)
T 4tmk_A 162 ESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTV 204 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH-TCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH-HCCcEEEECCCCCHHHHHHHHHHHH
Confidence 12333333333322211 1125688999999999998887654
No 113
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.91 E-value=6.7e-11 Score=116.29 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=73.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.||. ...++++++++.+|.+++|+|+|||||||+.++|++.+ |...+++.++.....
T Consensus 3 ~l~~~~l~~~yg~----------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAWGE----------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEECC----------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH
Confidence 6899999999986 34667777999999999999999999999999999966 677787776643222
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
.....++.||+....+.++..+++...+.
T Consensus 73 -~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 73 -AERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp -GGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred -HHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 22346888998777776677777665543
No 114
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.91 E-value=6.8e-09 Score=93.75 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCcccc---ccc-cccCCCCCCcCChhH-----HHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSN---IDK-MSAKQPLNDEDRRPW-----LNNINRIIHQ 105 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~---~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~ 105 (433)
++..|+|-|..||||||+++.|++.| |..++-+..-..... ... +..+.........-. ...+...+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p 80 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP 80 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999988 555543322110000 000 001111111000000 1123455666
Q ss_pred hhhCCCcEEEEcC------------cccHHHHHHHHhc----C-CeEEEEEEcCHHHHHHHHHHhhCCCC--CHH---hH
Q psy16778 106 LNVDNLTGVLVCS------------ALRRNYRDIIRNN----N-RVVFIYLKAEFGVILSRLQKRAEHFM--PAD---LL 163 (433)
Q Consensus 106 ~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~-~~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~---~l 163 (433)
.+.+|..+|.|-. +....+...+... . +++++||++|+++..+|+.+|+.... ..+ .+
T Consensus 81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~ 160 (205)
T 4hlc_A 81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH 160 (205)
T ss_dssp HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHH
T ss_pred HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHH
Confidence 7778865655521 1223333333321 1 27899999999999999988863221 111 12
Q ss_pred HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+...+.+............+||.+.+++++.++|.+.+
T Consensus 161 ~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i 198 (205)
T 4hlc_A 161 EKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTI 198 (205)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 22222222211101114678898899999988876543
No 115
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=98.90 E-value=1.4e-09 Score=106.64 Aligned_cols=171 Identities=10% Similarity=0.027 Sum_probs=108.5
Q ss_pred Hhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCC-------
Q psy16778 221 FALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST------- 291 (433)
Q Consensus 221 ~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~------- 291 (433)
..|++|+|.|+.|. +.+++||+|+|||++++.||+++|+++.......-...++++|.+.|+.++++....
T Consensus 27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~ 106 (368)
T 3vkj_A 27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA 106 (368)
T ss_dssp CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence 46899999999999 778999999999999999999999976433223344569999999999999887731
Q ss_pred -CCHHHHHHhCCCCcceEEEee----c-cCHHHHHHHHHHHHHcCCcEEEEeeee-c--ccCccccccccccCCCccchH
Q psy16778 292 -TSIEELAEKTPQTTKWFQLYI----Y-RDREITKSLVQRAEKAGYKALVLTVDT-N--VFGTRYADIRNKFNMPSHLNI 362 (433)
Q Consensus 292 -~~~eeva~~~~~~~~w~qly~----~-~d~~~~~~~~~~A~~ag~~~i~ltvD~-~--~~G~r~~~~~~~~~~~~~~s~ 362 (433)
.+++-+.+.+|+.+.+..+.. . .+.+.. .+.++..+..++.+.+.. + +.....++.+ ...+
T Consensus 107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~---~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~-------~~~~ 176 (368)
T 3vkj_A 107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEF---QDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQ-------IYAL 176 (368)
T ss_dssp SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHH---HHHHHHTTCSEEEEECCHHHHHHSSSCCCBCB-------THHH
T ss_pred HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHH---HHHHHHhcCCCeEEEecchhhhhCCCCCchhh-------HHHH
Confidence 234335555676666766665 2 343433 233444577888876531 0 1000011110 0123
Q ss_pred HHHHhhCCCcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778 363 EELAEKTPQTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 363 e~i~~~~~~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT 405 (433)
+.|...... ..+++..|.. ++.+.+++++++|+++|+|.
T Consensus 177 ~~i~~i~~~----~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~ 218 (368)
T 3vkj_A 177 EKLRDISKE----LSVPIIVKESGNGISMETAKLLYSYGIKNFDTS 218 (368)
T ss_dssp HHHHHHHTT----CSSCEEEECSSSCCCHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHH----cCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEe
Confidence 333332111 1233333322 57899999999999998863
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.89 E-value=1.9e-09 Score=100.11 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc----ccccCCCCCCcCChhHHHHHHHHHHHhhh-CCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID----KMSAKQPLNDEDRRPWLNNINRIIHQLNV-DNL 111 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 111 (433)
++++|+|+|++||||||+++.|++++|..+++.+++....... +......++.....+.....+.+...+.. .+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999887764321000 00000001111111122222222222221 344
Q ss_pred cEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHh
Q psy16778 112 TGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKR 153 (433)
Q Consensus 112 ~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R 153 (433)
++++++........+.+..... ..++||+++++++.+|+..|
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r 148 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR 148 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence 5677654433333334433222 58999999999999999776
No 117
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.89 E-value=1.9e-10 Score=105.99 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=34.0
Q ss_pred eEEEEEEcCHHHHHHHHHHhhCCCC---C---HHhHHHHHhhccCCCC-CCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 134 VVFIYLKAEFGVILSRLQKRAEHFM---P---ADLLESQFQTLEEPDP-LVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---~---~~~l~~~~~~~~~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
+++|||++|++++.+|+.+|+.... . ...+...+..+...++ ......++||++.+++++.++|.+.+.+
T Consensus 148 D~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 148 DLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 7899999999999999988742111 1 2234444444432211 0122458899999999999998877654
No 118
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.87 E-value=4.9e-09 Score=94.11 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccccccCCCCCCcCChhH----HHHHHHHHHHhhh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDKMSAKQPLNDEDRRPW----LNNINRIIHQLNV 108 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 108 (433)
+.|+|-|.-||||||+++.|++.| |..++-+..-..... ....-...........-. .......+...+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~ 80 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988 776664433211100 000000111111100000 0122344566677
Q ss_pred CCCcEEEEcCc------------ccHHHHHHHHhc----C-CeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc
Q psy16778 109 DNLTGVLVCSA------------LRRNYRDIIRNN----N-RVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLE 171 (433)
Q Consensus 109 ~~~~~Vi~~~~------------~~~~~~~~l~~~----~-~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~ 171 (433)
.|..+|.|-.. ....+...+... . +++++||++|+++..+|..++. +....+.+....+.+.
T Consensus 81 ~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d-r~e~~ef~~rv~~~y~ 159 (197)
T 3hjn_A 81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN-RFEKREFLERVREGYL 159 (197)
T ss_dssp TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-TTCCHHHHHHHHHHHH
T ss_pred CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC-ccccHHHHHHHHHHHH
Confidence 77666655211 222332222221 1 2799999999999999976553 3444444443333332
Q ss_pred CCCCCCCCCeEEEccCCCHHHHHHHHhcCCCCC
Q psy16778 172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTR 204 (433)
Q Consensus 172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~~ 204 (433)
..........++||.+.+++++.++|.+.+.++
T Consensus 160 ~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 160 VLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred HHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 221100113578898999999999998887664
No 119
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.82 E-value=6e-10 Score=108.72 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=71.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc---
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP--- 74 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~--- 74 (433)
++++++|++.|+. ...++++++++.+|.+++|+|+|||||||+.++|++.+ |...+++.++..
T Consensus 4 ~l~i~~ls~~y~~----------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSFQN----------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc
Confidence 6899999999986 34666777999999999999999999999999999966 667777765521
Q ss_pred cccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 75 QSNIDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
.........++.||+....+.++..+++...
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 1111223468888887766666666666554
No 120
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=98.81 E-value=3e-09 Score=103.86 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred hhHHhhhcceeeccccc-CC-CCCCceeeeC-----CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCC
Q psy16778 218 FEQFALKVLRIRPRVMR-DL-SKRTLVTDAL-----GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIS 290 (433)
Q Consensus 218 ~~~~a~~~~~l~pr~l~-~~-~~~d~~~~~~-----g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s 290 (433)
.|..+|++|.|+|+.+. ++ +++|++|+|+ |.+++.||+++|+++ .++.++|+|+.++|...+++.
T Consensus 17 ~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~------~~~~~lA~Ava~~Gglg~i~~-- 88 (351)
T 2c6q_A 17 RGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT------VGTFEMAKVLCKFSLFTAVHK-- 88 (351)
T ss_dssp --CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTT------TSCHHHHHHHHHTTCEEECCT--
T ss_pred cCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCC------CCcHHHHHHHHHCCCEEEEcC--
Confidence 34578999999999987 67 7999999999 999999999999874 577889999999999888774
Q ss_pred CCCHHHHHHhCCCCcceE-EEe--eccCHHHHHHHHHHHHHc--CCcEEEEeeeecccCccccccccccCCCccch---H
Q psy16778 291 TTSIEELAEKTPQTTKWF-QLY--IYRDREITKSLVQRAEKA--GYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---I 362 (433)
Q Consensus 291 ~~~~eeva~~~~~~~~w~-qly--~~~d~~~~~~~~~~A~~a--g~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~ 362 (433)
+.++|++++.....+.++ .+. .....+.. +.++...+. |+..+.+++. . |. +... +
T Consensus 89 ~~s~e~~~~~i~~~p~~l~~v~~~~g~~~~~~-~~~~~l~~~~~g~~~i~i~~~--~-g~------------~~~~~~~i 152 (351)
T 2c6q_A 89 HYSLVQWQEFAGQNPDCLEHLAASSGTGSSDF-EQLEQILEAIPQVKYICLDVA--N-GY------------SEHFVEFV 152 (351)
T ss_dssp TCCHHHHHHHHHHCGGGCTTEEEEECSSHHHH-HHHHHHHHHCTTCCEEEEECS--C-TT------------BHHHHHHH
T ss_pred CCCHHHHHHHHhhCchhhheeEeecCCChHHH-HHHHHHHhccCCCCEEEEEec--C-CC------------cHHHHHHH
Confidence 578888876431112222 111 12222222 334444444 8888776542 1 21 1112 3
Q ss_pred HHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 363 EELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 363 e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
+.+.+..++ +.+......+.+.+++|.++|+++|+|+.
T Consensus 153 ~~lr~~~~~------~~vi~g~v~t~e~A~~a~~aGaD~I~v~~ 190 (351)
T 2c6q_A 153 KDVRKRFPQ------HTIMAGNVVTGEMVEELILSGADIIKVGI 190 (351)
T ss_dssp HHHHHHCTT------SEEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHhcCC------CeEEEEeCCCHHHHHHHHHhCCCEEEECC
Confidence 333333321 22222345678999999999999999963
No 121
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.78 E-value=6.6e-09 Score=106.90 Aligned_cols=118 Identities=17% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-----EEeCCCCCccccccccccCCCCCCcCChhHHHHHHHH-------
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVK-----FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRI------- 102 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~-----~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 102 (433)
..++.+|+|+|+|||||||+++.|++.+++. +++.|+++....... .....|. +.....++..+..
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~-~~~~~f~-~~~~~~~~~re~~~~~~l~~ 109 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY-SSYNFFR-PDNEEAMKVRKQCALAALRD 109 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCC-CCGGGGC-TTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCC-ccccccC-cccHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999998443 466677653311100 0011122 2222333222222
Q ss_pred HHHhh--hCCCcEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778 103 IHQLN--VDNLTGVLVCSALRRNYRDII----RNNNR-VVFIYLKAE-FGVILSRLQKRA 154 (433)
Q Consensus 103 ~~~~~--~~~~~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~-~e~l~~Rl~~R~ 154 (433)
+...+ ..+..+|+|+++....+++.+ ++.+. .++|++.|+ ++++.+|+.+|.
T Consensus 110 ~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 110 VKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 11222 467788999888776666544 33332 456666777 788888887665
No 122
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.75 E-value=5.7e-08 Score=87.63 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=34.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHP 74 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~ 74 (433)
.+++.+|+|+|++||||||+++.|++.++ +.+++.|....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 45778999999999999999999999988 99999988754
No 123
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.75 E-value=4.1e-09 Score=95.83 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=88.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc----ccccccCC--CCCCcCChhHH--HH--HHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN----IDKMSAKQ--PLNDEDRRPWL--NN--INRIIHQ 105 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~----~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~ 105 (433)
++|+.|+|.|++||||||+++.|++.++....-...-..... +...-.+. ........-.+ .+ ..+.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~p 82 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK 82 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999862111111100000 00000010 01110000011 11 1234556
Q ss_pred hhhCCCcEEEEcCccc-----------HHHHHHHHhc---C--CeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778 106 LNVDNLTGVLVCSALR-----------RNYRDIIRNN---N--RVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQ 168 (433)
Q Consensus 106 ~~~~~~~~Vi~~~~~~-----------~~~~~~l~~~---~--~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~ 168 (433)
.+..|..+|.|-...+ ....+++.+. . ++++||| ++|+++..+|+..+.++....+.+++..+
T Consensus 83 aL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~rvr~ 162 (216)
T 3tmk_A 83 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQ 162 (216)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHHHHHH
T ss_pred HHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHHHHHH
Confidence 6677866666632200 0112233332 1 1799999 99999999997655444444333333222
Q ss_pred hccCCCC----CCCCCeEEEc-cCCCHHHHHHHHhcCC
Q psy16778 169 TLEEPDP----LVEPDVRTVS-VNEPLEGIVSKSAIMP 201 (433)
Q Consensus 169 ~~~~~~~----~~~~~~~~Id-~~~~~ee~~~~i~~~l 201 (433)
.+..+.. +.....++|| .+.+++++.++|.+.+
T Consensus 163 ~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i 200 (216)
T 3tmk_A 163 TFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIV 200 (216)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 2222110 0112568899 6799999988876654
No 124
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.74 E-value=1e-09 Score=102.56 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=63.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 15 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 15 AVVVKDLRKRIGK----------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH
T ss_pred eEEEEEEEEEECC----------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHH
Confidence 7899999999975 23566777999999999999999999999999999865 556666654432111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
......++.+|+......++..+++
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 1112346667765444434444444
No 125
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.74 E-value=2.1e-09 Score=105.16 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=69.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.||.. ..++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++.....
T Consensus 3 ~l~~~~l~~~y~~~----------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKFGNF----------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEESSSS----------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEECCE----------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 58999999999762 2456667889999999999999999999999999966 666777765532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
.....++.||+....+.++..+++...+
T Consensus 73 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 73 -KDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp -GGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred -hHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 1234578888866666666666665543
No 126
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.73 E-value=1.7e-09 Score=105.72 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=68.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++.....
T Consensus 3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYFGK----------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh
Confidence 5899999999986 23566677889999999999999999999999999966 667777765532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.....++.||+....+.++..+++..
T Consensus 73 -~~r~ig~v~Q~~~l~~~ltv~eni~~ 98 (359)
T 2yyz_A 73 -KYREVGMVFQNYALYPHMTVFENIAF 98 (359)
T ss_dssp -GGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred -hhCcEEEEecCcccCCCCCHHHHHHH
Confidence 12345788887666665566555544
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.72 E-value=7.9e-08 Score=87.61 Aligned_cols=158 Identities=12% Similarity=0.091 Sum_probs=81.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--eE----EeCCCCCccccccccccCCCCCCcCChhHHHH---------
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV--KF----IDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN--------- 98 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~--~~----id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 98 (433)
.+++|.+++|+|||||||||+.+.|++.+.. .. +.+..... ......++.|+.......+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 4789999999999999999999999997641 11 11111110 011123455554322221111
Q ss_pred --------HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778 99 --------INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ 168 (433)
Q Consensus 99 --------~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~ 168 (433)
-...+...+..|..++++.. ......+.+... ..++.+.-+.+++.+|+..|+. ...+.+...+.
T Consensus 89 ~~~~~yg~~~~~v~~~l~~G~illLDLD---~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~--~~~e~i~~rl~ 163 (219)
T 1s96_A 89 VFGNYYGTSREAIEQVLATGVDVFLDID---WQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQ--DSEEVIAKRMA 163 (219)
T ss_dssp ETTEEEEEEHHHHHHHHTTTCEEEEECC---HHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSC--SCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHhcCCeEEEEEC---HHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCC--CCHHHHHHHHH
Confidence 01235556667877888833 333333333322 3444555678999999988763 22333333322
Q ss_pred hc-cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 169 TL-EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 169 ~~-~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.- .+... ....+++|.+ .+.++...++...+
T Consensus 164 ~a~~e~~~-~~~~d~~i~N-d~l~~a~~~l~~ii 195 (219)
T 1s96_A 164 QAVAEMSH-YAEYDYLIVN-DDFDTALTDLKTII 195 (219)
T ss_dssp HHHHHHTT-GGGSSEEEEC-SSHHHHHHHHHHHH
T ss_pred HHHHHHhh-ccCCCEEEEC-cCHHHHHHHHHHHH
Confidence 11 11110 1113445555 46777666665554
No 128
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.72 E-value=1.3e-09 Score=100.62 Aligned_cols=99 Identities=19% Similarity=0.122 Sum_probs=70.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+... .....++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 1 ~l~~~~l~~~y~~~~------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEETT------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCCC------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCH
Confidence 478999999997422 0123567778999999999999999999999999999866 667777765532111
Q ss_pred c-----cccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 78 I-----DKMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 78 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
. .....++.+|++...+.++..+++....
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~ 108 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPL 108 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH
Confidence 0 1123678888876666566666665543
No 129
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.71 E-value=2.8e-09 Score=104.06 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=73.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+... -....++++++++.+|.+++|+|+|||||||+.+.|+..+ |...+++.++.....
T Consensus 24 mi~v~~ls~~y~~~~------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 24 MIKLSNITKVFHQGT------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp CEEEEEEEEEEECSS------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred eEEEEeEEEEeCCCC------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 689999999997421 1134677788999999999999999999999999999966 667787776643211
Q ss_pred --c--cccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778 78 --I--DKMSAKQPLNDEDRRPWLNNINRIIHQLN 107 (433)
Q Consensus 78 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
. .....++.||+....+.++..+++.....
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 0 12346888998776666667677665543
No 130
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=98.71 E-value=5.4e-09 Score=104.31 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=61.0
Q ss_pred Hhhhcceeeccccc-CCCCCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778 221 FALKVLRIRPRVMR-DLSKRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA 298 (433)
Q Consensus 221 ~a~~~~~l~pr~l~-~~~~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva 298 (433)
.+|++|.|+|+++. +++++|++|+++ |.+++.||++||+++ ++++|. +.++.++|...+++ ++.++|+++
T Consensus 10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~----~~~~el--a~a~a~aGglg~i~--~~~s~e~~~ 81 (404)
T 1eep_A 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDT----VTESQM--AIAIAKEGGIGIIH--KNMSIEAQR 81 (404)
T ss_dssp CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTT----TCSHHH--HHHHHHHTSEEEEC--SSSCHHHHH
T ss_pred CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCC----CCCHHH--HHHHHHCCCEEEEC--CCCCHHHHH
Confidence 57999999999998 889999999999 999999999999986 566666 45578888887776 567899886
Q ss_pred Hh
Q psy16778 299 EK 300 (433)
Q Consensus 299 ~~ 300 (433)
+.
T Consensus 82 ~~ 83 (404)
T 1eep_A 82 KE 83 (404)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.70 E-value=1.7e-09 Score=104.11 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH 73 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~ 73 (433)
..++.+|+|+|++||||||+++.|++.++ +.+++.|...
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 37789999999999999999999999876 5667777654
No 132
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.70 E-value=4.3e-08 Score=86.85 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH-------------------
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN------------------- 98 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 98 (433)
.|+|+||||||||||.+.|.+.+. +.+.-+...+.+.....-...+-|-. ...+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs--~~eF~~~i~~g~flE~~~~~g~~YGt 80 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS--VDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeec--HHHHHHHHHcCCEEEEEEEcCceeee
Confidence 489999999999999999988763 22322222222211111111122211 1111111
Q ss_pred HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEE-EcCHHHHHHHHHHhhC
Q psy16778 99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYL-KAEFGVILSRLQKRAE 155 (433)
Q Consensus 99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L-~~~~e~l~~Rl~~R~~ 155 (433)
....+...+.+|..+|++... .....+++..+ ..+||+ -.|.++|.+|+.+|+.
T Consensus 81 ~~~~v~~~l~~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~ 137 (186)
T 1ex7_A 81 TVASVKQVSKSGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp EHHHHHHHHHHTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC
T ss_pred ecceeeehhhCCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC
Confidence 123355566678888887653 22233444322 345555 5568999999999974
No 133
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.70 E-value=1.7e-09 Score=101.48 Aligned_cols=93 Identities=23% Similarity=0.218 Sum_probs=65.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC-ccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH-PQS 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~-~~~ 76 (433)
+++++||++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++. ...
T Consensus 24 ~l~i~~l~~~y~~----------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSFGS----------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccc
Confidence 5889999999975 23566777999999999999999999999999999866 56677665542 000
Q ss_pred c--ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 77 N--IDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
. ......++.+|+......++..+++..
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~ 123 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITL 123 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 0 011235677777554444455555544
No 134
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.70 E-value=2.2e-09 Score=100.56 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=66.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
+++++||++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 7 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYFGE----------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEETT----------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEECC----------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 5889999999975 34677888999999999999999999999999999866 66677665543211
Q ss_pred -cccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 77 -NIDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.......++.+|+......++..+++..
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 0112235778887654444555555543
No 135
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.69 E-value=2e-09 Score=105.06 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=68.6
Q ss_pred ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
++++++|++.| +.. ..++++++++.+|.+++|+|+|||||||+.++|++.+ |...+++.++....
T Consensus 14 ~l~~~~l~~~y~g~~----------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 14 TIEFVGVEKIYPGGA----------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEEEECCTTST----------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred eEEEEEEEEEEcCCC----------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC
Confidence 68899999999 752 2455666889999999999999999999999999866 66677765553211
Q ss_pred cccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
. .....++.+|+....+.++..+++...+
T Consensus 84 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~l 112 (355)
T 1z47_A 84 P-QKRNVGLVFQNYALFQHMTVYDNVSFGL 112 (355)
T ss_dssp G-GGSSEEEECGGGCCCTTSCHHHHHHHHH
T ss_pred h-hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 1 1234578888766666666666665543
No 136
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.69 E-value=2.2e-09 Score=105.41 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=61.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++.....
T Consensus 11 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRFGN----------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEECC----------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh
Confidence 4899999999975 23566677899999999999999999999999999966 667777665532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRI 102 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
.....++.||+....+.++..+++
T Consensus 81 -~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 81 -KDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp -GGGTEEEEEC------CCCHHHHH
T ss_pred -hhCcEEEEecCcccCCCCCHHHHH
Confidence 122456777765444333444444
No 137
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.69 E-value=2.6e-09 Score=105.06 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=68.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
++++++|++.|+. ...++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++...
T Consensus 3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVFGE----------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc
Confidence 5899999999975 23566677889999999999999999999999999966 6667776554320
Q ss_pred ---ccccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778 76 ---SNIDKMSAKQPLNDEDRRPWLNNINRIIHQL 106 (433)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
........++.||+....+.++..+++...+
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 0111234578888866666666666665543
No 138
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.68 E-value=1.6e-07 Score=83.74 Aligned_cols=154 Identities=14% Similarity=0.041 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCccccccccccCCCCCCc-----CCh-------hHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNIDKMSAKQPLNDE-----DRR-------PWLNNINR 101 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~ 101 (433)
...+|+|+|++||||+|+++.+.+.+| +..+...+.++... ....|..++.. ..+ .|.+.+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~--a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY--AQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH--HHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH--HHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999998785 66677766554211 11223333221 111 11111111
Q ss_pred H-----HHHhh-hCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778 102 I-----IHQLN-VDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP 173 (433)
Q Consensus 102 ~-----~~~~~-~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~ 173 (433)
. +.... ....+++|..+-....-.+.+++.. . +.+|++.++++++++|...+.......+ .. --++..
T Consensus 88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e---sE-~gL~~~ 163 (202)
T 3ch4_B 88 ADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE---SE-CGLDNF 163 (202)
T ss_dssp HCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH---HH-HTTTTC
T ss_pred cCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc---cc-cCCCCC
Confidence 1 11111 1223456656666666667777643 2 6789999999999999432221111111 11 111221
Q ss_pred CCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 174 DPLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
..++++|.|+.+.+++..++.+.
T Consensus 164 ----~~~D~vI~Ndgt~eel~~~v~~l 186 (202)
T 3ch4_B 164 ----GDFDWVIENHGVEQRLEEQLENL 186 (202)
T ss_dssp ----CCCSEEEEECSCHHHHHHHHHHH
T ss_pred ----CcCCEEEEeCCCHHHHHHHHHHH
Confidence 23789999999999887776543
No 139
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.68 E-value=8.3e-09 Score=94.16 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=76.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC----eEEe-CCCCCcccc---ccccccC-CCCCCcCCh-----hHHHHH
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV----KFID-GDHLHPQSN---IDKMSAK-QPLNDEDRR-----PWLNNI 99 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~----~~id-~D~~~~~~~---~~~~~~~-~~~~~~~~~-----~~~~~~ 99 (433)
...+|+.|+|.|++||||||+++.|++.++. .++. +..-..... +...-.+ ..+...... ..+..+
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999998754 3222 111100000 0000001 001111100 111233
Q ss_pred HHHHHHhhhCCCcEEEEcCc------------ccHHHHHHHHhc---CC-eEEEEEEcCHHHHHHHHHHhhCCCCC--HH
Q psy16778 100 NRIIHQLNVDNLTGVLVCSA------------LRRNYRDIIRNN---NR-VVFIYLKAEFGVILSRLQKRAEHFMP--AD 161 (433)
Q Consensus 100 ~~~~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~---~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~ 161 (433)
.+.+...+..|..+|.|-.. ....+...+.+. .. +++|||++|+++..+|+ +|. +... .+
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd-r~E~~~~e 174 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN-GYEFADME 174 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC------------------CHH
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC-ccccchHH
Confidence 44466677788666666321 122332333211 12 79999999999999999 443 2222 23
Q ss_pred hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
.+++..+.+..+........++||++.+++++ ++|.+.+
T Consensus 175 ~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l 213 (223)
T 3ld9_A 175 FYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVH 213 (223)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHH
Confidence 33322222222111011257899998888888 7776543
No 140
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.68 E-value=7.6e-08 Score=84.14 Aligned_cols=124 Identities=15% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH----HHHHHHHHHHh
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW----LNNINRIIHQL 106 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 106 (433)
+++++.+|.+++|+|+|||||||+++.+.. |...++.|.+. ++.++++..... ++.........
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFCR----------GLMSDDENDQTVTGAAFDVLHYIVSKR 69 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHHH----------HHHCSSTTCGGGHHHHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHHH----------HHhcCcccchhhHHHHHHHHHHHHHHH
Confidence 346678999999999999999999997542 45555555432 222333222111 22233334444
Q ss_pred hhCCCcEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778 107 NVDNLTGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ 166 (433)
Q Consensus 107 ~~~~~~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~ 166 (433)
...+...+++...... ......+.... ..+++|+-|...+-.|.++|..+..+.+.+...
T Consensus 70 ~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 70 LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 5566677777655332 22334444443 689999999999999998887656665555444
No 141
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.68 E-value=1.8e-09 Score=98.89 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=64.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 4 ~l~~~~l~~~y~~----------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVIRG----------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEECC----------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence 5899999999975 23566777899999999999999999999999999865 566676655432110
Q ss_pred -----ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 78 -----IDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
......++.+|+......++..+++..
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~ 105 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIV 105 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence 011235677776554444445555443
No 142
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.67 E-value=1.8e-09 Score=101.33 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=65.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc---
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP--- 74 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~--- 74 (433)
++++++|++.||. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++..
T Consensus 6 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRYGG----------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccc
Confidence 5899999999975 23566777999999999999999999999999999866 566776655421
Q ss_pred ---------cc--cccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 75 ---------QS--NIDKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 75 ---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.. .......++.+|+......++..+++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~ 116 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 116 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHh
Confidence 00 0011235777777555555555555544
No 143
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=98.67 E-value=1.4e-08 Score=98.66 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=91.8
Q ss_pred hhHHhhhcceeeccc--ccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHH
Q psy16778 218 FEQFALKVLRIRPRV--MRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIE 295 (433)
Q Consensus 218 ~~~~a~~~~~l~pr~--l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~e 295 (433)
.|..+|++|.|+||+ +++++++|++|+|+|.+++.||++||+++.. +..+++++.+.|...+.........+
T Consensus 11 ~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~~~~ 84 (336)
T 1ypf_A 11 GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPEKRI 84 (336)
T ss_dssp -CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGGGHH
T ss_pred cccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCHHHH
Confidence 356789999999999 7899999999999999999999999987532 24455554555443322222222233
Q ss_pred HHHHh-C-CCCcceEEEeeccCHHHHHHHHHHHHHcC--CcEEEEeeeecccCccccccccccCCCccch---HHHHHhh
Q psy16778 296 ELAEK-T-PQTTKWFQLYIYRDREITKSLVQRAEKAG--YKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEK 368 (433)
Q Consensus 296 eva~~-~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag--~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~ 368 (433)
+..+. . .+-+.-.+ ...+.+ ..+.++.+.++| +..+.++. . .| . +... ++.+.+.
T Consensus 85 ~~i~~~~~~g~~v~v~--~g~~~~-~~~~a~~~~~~g~~~~~i~i~~--~-~G---------~---~~~~~~~i~~lr~~ 146 (336)
T 1ypf_A 85 SFIRDMQSRGLIASIS--VGVKED-EYEFVQQLAAEHLTPEYITIDI--A-HG---------H---SNAVINMIQHIKKH 146 (336)
T ss_dssp HHHHHHHHTTCCCEEE--ECCSHH-HHHHHHHHHHTTCCCSEEEEEC--S-SC---------C---SHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEe--CCCCHH-HHHHHHHHHhcCCCCCEEEEEC--C-CC---------C---cHHHHHHHHHHHHh
Confidence 32221 1 11122233 222322 224566666777 66665443 1 11 1 1222 3333343
Q ss_pred CCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 369 TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 369 ~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
.+.++. .+....+.+.+++|+++|+++|+++
T Consensus 147 ~~~~~v------i~G~v~s~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 147 LPESFV------IAGNVGTPEAVRELENAGADATKVG 177 (336)
T ss_dssp CTTSEE------EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred CCCCEE------EECCcCCHHHHHHHHHcCCCEEEEe
Confidence 332221 1222567899999999999999994
No 144
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.65 E-value=1.5e-09 Score=106.02 Aligned_cols=96 Identities=15% Similarity=0.063 Sum_probs=67.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-- 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-- 75 (433)
++++++|++.|+.... ..++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++...
T Consensus 3 ~l~i~~l~~~y~~~~~--------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKV--------VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEGGGTE--------EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEECCEee--------eeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccc
Confidence 5899999999986210 1456667889999999999999999999999999865 6667766554220
Q ss_pred --ccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
........++.+|+....+.++..+++...
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~ 106 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence 011122457788876666666666666543
No 145
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.64 E-value=2.9e-09 Score=103.72 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=67.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++||++.|+. . .++++++++.+|.+++|+|+|||||||+.+.|++.+ |...+++.++.....
T Consensus 1 ml~~~~l~~~y~~----------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKWKN----------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEECSS----------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEECC----------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch
Confidence 4789999999975 2 455566889999999999999999999999999966 666777655532111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQ 105 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (433)
.....++.+|+....+.++..+++...
T Consensus 70 -~~r~ig~v~Q~~~l~~~ltv~enl~~~ 96 (348)
T 3d31_A 70 -EKHDIAFVYQNYSLFPHMNVKKNLEFG 96 (348)
T ss_dssp -HHHTCEEECTTCCCCTTSCHHHHHHHH
T ss_pred -hhCcEEEEecCcccCCCCCHHHHHHHH
Confidence 123467888886666665666665544
No 146
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.64 E-value=2.6e-09 Score=98.92 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=64.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 6 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYYGA----------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEECC----------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH
Confidence 5789999999975 23566777899999999999999999999999999865 566676655432111
Q ss_pred --ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778 78 --IDKMSAKQPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
......++.+|+......++..+++.
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~ 103 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLM 103 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHH
Confidence 11123566777654444444444443
No 147
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.61 E-value=1.5e-09 Score=101.87 Aligned_cols=68 Identities=24% Similarity=0.207 Sum_probs=43.5
Q ss_pred eEEEEEEcCHHHHHHHHHHhhCC---CCCHHhHH---HHHhhcc------CCCC-CCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 134 VVFIYLKAEFGVILSRLQKRAEH---FMPADLLE---SQFQTLE------EPDP-LVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 134 ~~vv~L~~~~e~l~~Rl~~R~~~---~~~~~~l~---~~~~~~~------~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
.++|||+++++++.+|+.+|+.. ....+.+. ..++.+. +.+. +.+...++||++.+++++.+.|.+.
T Consensus 176 d~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~~~ 255 (263)
T 1p5z_B 176 DGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEK 255 (263)
T ss_dssp SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHHHH
Confidence 68999999999999999888521 11222222 2333221 1111 1123478899989999999888765
Q ss_pred C
Q psy16778 201 P 201 (433)
Q Consensus 201 l 201 (433)
+
T Consensus 256 l 256 (263)
T 1p5z_B 256 V 256 (263)
T ss_dssp H
T ss_pred H
Confidence 4
No 148
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.61 E-value=9.5e-09 Score=95.09 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=62.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
+++++||++.|+. .++++++++.+ .+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 1 ml~~~~l~~~y~~------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 67 (240)
T 2onk_A 1 MFLKVRAEKRLGN------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP 67 (240)
T ss_dssp CCEEEEEEEEETT------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT
T ss_pred CEEEEEEEEEeCC------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch
Confidence 4789999999974 15566688999 999999999999999999999866 566776655432111
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
.....++.+|+......++..+++.
T Consensus 68 -~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 68 -ERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp -TTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred -hhCcEEEEcCCCccCCCCcHHHHHH
Confidence 1224577888765544444544443
No 149
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.58 E-value=9.2e-09 Score=95.84 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=58.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--h----CCeEEeCCCCCcc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR--L----GVKFIDGDHLHPQ 75 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~--l----g~~~id~D~~~~~ 75 (433)
+++++||++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++. + |...+++.++...
T Consensus 3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 3 QLEIRDLWASIDG----------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS
T ss_pred eEEEEeEEEEECC----------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC
Confidence 5899999999975 2356677799999999999999999999999999995 2 5666766554321
Q ss_pred cc--ccccccCCCCCCcCCh
Q psy16778 76 SN--IDKMSAKQPLNDEDRR 93 (433)
Q Consensus 76 ~~--~~~~~~~~~~~~~~~~ 93 (433)
.. ......++.+|++...
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-C
T ss_pred CHHHHHhCcEEEeccCCccc
Confidence 11 1112245677765433
No 150
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.57 E-value=1.2e-07 Score=85.46 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLH 73 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~ 73 (433)
..+|.+|+|+|+|||||||+++.|++.+. ..++..|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 56789999999999999999999999884 5677777654
No 151
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.56 E-value=8.2e-09 Score=93.28 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=40.4
Q ss_pred eEEEEEEcCHHHHHHHHHHhhCC-------C-CC-HHh---HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778 134 VVFIYLKAEFGVILSRLQKRAEH-------F-MP-ADL---LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIM 200 (433)
Q Consensus 134 ~~vv~L~~~~e~l~~Rl~~R~~~-------~-~~-~~~---l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~ 200 (433)
..+|||+++++++.+|+.+|.+. . .. .+. +..++..+...+ .....++||++.+++++.++|...
T Consensus 134 d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~vId~~~~~~~v~~~i~~~ 210 (214)
T 1gtv_A 134 DWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQG--WGGRWLVVGADVDPGRLAATLAPP 210 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEE--EEEEEEEEEEEEBHHHHHHHHC--
T ss_pred CEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHhcCC
Confidence 67999999999999999998641 1 10 122 222332322211 001447888889999999988543
No 152
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.56 E-value=1.4e-06 Score=79.23 Aligned_cols=41 Identities=29% Similarity=0.406 Sum_probs=27.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEE
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFI 67 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~i 67 (433)
.+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 577888999999999999999999999999999977 34444
No 153
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.56 E-value=1.5e-08 Score=93.91 Aligned_cols=61 Identities=28% Similarity=0.210 Sum_probs=50.4
Q ss_pred ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++||++.| +.. ..++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 1 ml~~~~l~~~y~~~~----------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 66 (243)
T 1mv5_A 1 MLSARHVDFAYDDSE----------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66 (243)
T ss_dssp CEEEEEEEECSSSSS----------CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred CEEEEEEEEEeCCCC----------ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 47899999999 432 2456677889999999999999999999999999866 7777776554
No 154
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.56 E-value=5.8e-09 Score=94.78 Aligned_cols=87 Identities=14% Similarity=0.013 Sum_probs=61.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
++++++|++.|+. . .+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++. .
T Consensus 10 ~l~~~~ls~~y~~-~----------il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~-- 75 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-P----------VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-K-- 75 (214)
T ss_dssp EEEEEEEEEESSS-E----------EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-G--
T ss_pred eEEEEEEEEEeCC-e----------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-h--
Confidence 5789999999974 2 345566889999999999999999999999999866 55666654442 1
Q ss_pred ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778 78 IDKMSAKQPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (433)
.....++.+|+......++..+++.
T Consensus 76 -~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 76 -VKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp -GGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred -hcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 1223566777654444444444443
No 155
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.55 E-value=4.9e-08 Score=92.92 Aligned_cols=38 Identities=26% Similarity=0.491 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP 74 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~ 74 (433)
++.+|+|+|++||||||+++.|++.+| +.++++|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567999999999999999999999887 78999999985
No 156
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.55 E-value=5e-08 Score=99.46 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------eEEeCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGV-------KFIDGDH 71 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~-------~~id~D~ 71 (433)
.+++++|+|+|+|||||||+|+.|+++|+. .++|+|+
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 457799999999999999999999999986 6888887
No 157
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.54 E-value=1.1e-08 Score=96.13 Aligned_cols=61 Identities=21% Similarity=0.137 Sum_probs=50.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 11 ~l~~~~l~~~~~~----------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQQ----------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred eEEEEeEEEEeCC----------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence 5789999999986 33566777889999999999999999999999999865 5566665554
No 158
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.54 E-value=1e-08 Score=96.95 Aligned_cols=61 Identities=18% Similarity=0.075 Sum_probs=51.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++||++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 21 ~l~~~~l~~~y~~----------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQG----------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred eEEEEeEEEEECC----------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence 6889999999976 23566777999999999999999999999999999866 5566666544
No 159
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.54 E-value=8.6e-08 Score=97.53 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc---cC-CCCCCcCChhHHHHHHHH-------HH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS---AK-QPLNDEDRRPWLNNINRI-------IH 104 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~-------~~ 104 (433)
+++.+|+|+|+|||||||+++.|++.+++.++++|.+.......... .. ..|. ..+...++..+.. +.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd-~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFL-PDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 56679999999999999999999999876555555432111001100 00 1122 2233222222222 12
Q ss_pred Hhh--hCCCcEEEEcCcccHHHHHHH----HhcCCeEEEEEE---cCHHHHHHHHHHhh
Q psy16778 105 QLN--VDNLTGVLVCSALRRNYRDII----RNNNRVVFIYLK---AEFGVILSRLQKRA 154 (433)
Q Consensus 105 ~~~--~~~~~~Vi~~~~~~~~~~~~l----~~~~~~~vv~L~---~~~e~l~~Rl~~R~ 154 (433)
..+ ..|..+|++++.....+++.+ ++.. ..++||+ .+++.+.+|+..+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~-~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNG-YKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHT-CEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcC-CcEEEEEEECCCHHHHHHHHHHhh
Confidence 233 456678889887766655544 3332 3567777 56888888887654
No 160
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.52 E-value=8.4e-07 Score=85.66 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=69.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC--Ccccccc------ccccCCC--------CCCcCC-hhHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL--HPQSNID------KMSAKQP--------LNDEDR-RPWLNNIN 100 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~--~~~~~~~------~~~~~~~--------~~~~~~-~~~~~~~~ 100 (433)
+.+|+|+|++||||||+++.|++.++..+|+.|.+ +...... ....+.. +..... ..|.+...
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 46899999999999999999999999999999988 3221100 0001111 111111 22223333
Q ss_pred HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEE-cCHHH---HHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLK-AEFGV---ILSRLQKRAEHFMPADLLESQFQTLEE 172 (433)
Q Consensus 101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~-~~~e~---l~~Rl~~R~~~~~~~~~l~~~~~~~~~ 172 (433)
..+......+..+|+.+|.. .+.+.+... +-+|.+ ++++. +.+|+. | -.....+.+...+...++
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~--ly~~~l~~~---l~~~~~~~d~~~~~Rlrrrl~-r-~~~~G~~~l~~~L~~vdP 155 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTG--LYIQSLLYN---YAFEDESISEDKMKQVKLKLK-E-LEHLNNNKLHEYLASFDK 155 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCH--HHHHHHHBC---SCCC---CCHHHHHHHHHHHH-T-TSSSCHHHHHHHHHHHCH
T ss_pred HHHHHHHhCCCcEEEECChh--hhHHHHHhc---ccccCCCCChHHHHHHHHHHH-H-HHhcCHHHHHHHHHhhCc
Confidence 34444445665555544432 455556554 236677 77773 444553 2 222234455555555544
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.50 E-value=1.3e-07 Score=83.25 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
+|.+++|+|+|||||||+++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999999763
No 162
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.49 E-value=1.5e-08 Score=95.57 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=58.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~ 76 (433)
+++++||++.|+... ..++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++... .
T Consensus 7 ~l~i~~ls~~y~~~~---------~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYSDGT---------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECTTSC---------EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEECCCC---------eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc
Confidence 478999999997421 2566777999999999999999999999999999866 6667777655211 0
Q ss_pred c--ccccccCCCCCCc
Q psy16778 77 N--IDKMSAKQPLNDE 90 (433)
Q Consensus 77 ~--~~~~~~~~~~~~~ 90 (433)
. ......++.+|++
T Consensus 78 ~~~~~~~~ig~v~Q~~ 93 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDP 93 (275)
T ss_dssp HHHHHHHSEEEECSSG
T ss_pred cHHHHhCcEEEEEcCc
Confidence 0 0122356777764
No 163
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.48 E-value=2.4e-08 Score=92.25 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=44.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+... ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 3 ~l~~~~l~~~y~~~~--------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 3 SITVRNATFTWARSD--------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEEEEEESCTTS--------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEEEEEEEeCCCC--------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999997311 12466677889999999999999999999999999865
No 164
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.44 E-value=3.5e-08 Score=97.48 Aligned_cols=82 Identities=18% Similarity=0.001 Sum_probs=58.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN- 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~- 77 (433)
.+++++|++.|+... ...++++++++.+|.+++|+|+|||||||+.++|++.+ |...+++.++.....
T Consensus 19 ~i~~~~l~~~y~~~~--------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGG--------NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CEEEEEEEEESSSSS--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHH
T ss_pred eEEEEEEEEEecCCC--------eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChH
Confidence 578999999994211 23566677899999999999999999999999999865 666777766542111
Q ss_pred ccccccCCCCCCcC
Q psy16778 78 IDKMSAKQPLNDED 91 (433)
Q Consensus 78 ~~~~~~~~~~~~~~ 91 (433)
......++.||+..
T Consensus 91 ~~rr~ig~v~Q~~~ 104 (390)
T 3gd7_A 91 QWRKAFGVIPQKVF 104 (390)
T ss_dssp HHHHTEEEESCCCC
T ss_pred HHhCCEEEEcCCcc
Confidence 01123567777653
No 165
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.43 E-value=9.3e-08 Score=85.82 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHP 74 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~ 74 (433)
..++.+|+|+|++||||||+++.|++.+ |. .+++.|.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 5678999999999999999999999976 43 3456676543
No 166
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.42 E-value=7e-07 Score=85.64 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
++.+|+|+|++||||||+++.|+++++..+++.|.+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 3468999999999999999999999999999999875
No 167
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.41 E-value=6.1e-08 Score=91.13 Aligned_cols=61 Identities=31% Similarity=0.263 Sum_probs=50.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~ 72 (433)
++++++|++.|+. ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 20 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVED----------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 5889999999975 23566777999999999999999999999999999952 5556665444
No 168
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.40 E-value=1.1e-06 Score=80.93 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKF 66 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~ 66 (433)
+|+.|+|.|.+||||||+++.|++.+ +..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 46899999999999999999999998 5544
No 169
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.40 E-value=9.7e-08 Score=89.70 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=57.9
Q ss_pred CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
|+++++||++.|+.... .....++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++...
T Consensus 1 ~~l~~~~l~~~y~~~~~-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~- 74 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTP-----LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY- 74 (266)
T ss_dssp CCEEEEEEEEEESTTST-----TCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-
T ss_pred CEEEEEEEEEEecCCCc-----cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-
Confidence 67899999999972000 0012466677999999999999999999999999999865 5566666544211
Q ss_pred cccccccCCCCCCc
Q psy16778 77 NIDKMSAKQPLNDE 90 (433)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (433)
. .....++.+|++
T Consensus 75 ~-~~~~i~~v~q~~ 87 (266)
T 2yz2_A 75 E-IRRNIGIAFQYP 87 (266)
T ss_dssp H-HGGGEEEECSSG
T ss_pred H-hhhhEEEEeccc
Confidence 1 112346677763
No 170
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.39 E-value=4.4e-08 Score=92.29 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=58.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
++++++|++.|+... +...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 16 ~l~~~~l~~~y~~~~-------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHP-------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CEEEEEEEECCTTCT-------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCCCC-------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH
Confidence 578999999997410 012456677889999999999999999999999999966 66677665543210
Q ss_pred cccccccCCCCCCcCC
Q psy16778 77 NIDKMSAKQPLNDEDR 92 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~ 92 (433)
.......++.+|+...
T Consensus 89 ~~~~~~i~~v~Q~~~l 104 (271)
T 2ixe_A 89 HYLHTQVAAVGQEPLL 104 (271)
T ss_dssp HHHHHHEEEECSSCCC
T ss_pred HHHhccEEEEecCCcc
Confidence 0011234666666543
No 171
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.37 E-value=4.4e-08 Score=91.00 Aligned_cols=80 Identities=23% Similarity=0.137 Sum_probs=56.1
Q ss_pred cccccceeee-c-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778 3 VSNFGNWRYW-G-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS 76 (433)
Q Consensus 3 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~ 76 (433)
+++++|++.| + . ...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 8 ~~~~~l~~~y~~~~----------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 8 ITFRNIRFRYKPDS----------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEESSTTS----------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC
T ss_pred eeEEEEEEEeCCCC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC
Confidence 5788999999 3 3 23566777999999999999999999999999999866 56667665543210
Q ss_pred -cccccccCCCCCCcCC
Q psy16778 77 -NIDKMSAKQPLNDEDR 92 (433)
Q Consensus 77 -~~~~~~~~~~~~~~~~ 92 (433)
.......++.+|++..
T Consensus 78 ~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp HHHHHHHEEEECSSCCC
T ss_pred HHHHHhcEEEEeCCCcc
Confidence 0011234666666443
No 172
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.35 E-value=5.8e-08 Score=89.17 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+... ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 6 ~l~~~~l~~~y~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 6 EVVMENVTAFWEEGG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEEECSSTTS--------CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEEeCCCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999995211 12466677889999999999999999999999999865
No 173
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.33 E-value=4.8e-08 Score=93.46 Aligned_cols=81 Identities=21% Similarity=0.107 Sum_probs=58.2
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
.+++++|++.|+.. ...+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 53 ~i~~~~vs~~y~~~---------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 53 RIEFENVHFSYADG---------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CEEEEEEEEESSTT---------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH
T ss_pred eEEEEEEEEEcCCC---------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH
Confidence 37889999999631 12566777999999999999999999999999999866 667777766542110
Q ss_pred -ccccccCCCCCCcC
Q psy16778 78 -IDKMSAKQPLNDED 91 (433)
Q Consensus 78 -~~~~~~~~~~~~~~ 91 (433)
......++.+|++.
T Consensus 124 ~~~r~~i~~v~Q~~~ 138 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTV 138 (306)
T ss_dssp HHHHHTEEEECSSCC
T ss_pred HHHhcceEEEecCCc
Confidence 01123466666543
No 174
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.33 E-value=7e-08 Score=89.96 Aligned_cols=51 Identities=20% Similarity=0.114 Sum_probs=44.3
Q ss_pred ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.|+ . ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 4 ~l~i~~l~~~y~~~----------~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 4 ALSVENLGFYYQAE----------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEEETTT----------TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEeCCC----------CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999997 4 12466677889999999999999999999999999865
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.33 E-value=6.5e-06 Score=73.39 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
..+|..|+|+||+|||||||.+.|.+.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45788999999999999999999999774
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.31 E-value=9.1e-06 Score=72.55 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
++|..++|+|+|||||||+.+.|.+.+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678999999999999999999998763
No 177
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.28 E-value=2.4e-07 Score=86.65 Aligned_cols=64 Identities=23% Similarity=0.095 Sum_probs=49.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~ 72 (433)
++++++|++.|+... +...++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 17 ~l~i~~l~~~y~~~~-------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQT-------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTCC-------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCCC-------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEh
Confidence 678999999997521 012456677889999999999999999999999999865 4455555443
No 178
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.28 E-value=1.4e-06 Score=80.37 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~ 72 (433)
++|+|+|++||||||+++.|.+++|++++.....
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~ 35 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP 35 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence 5899999999999999999999899998876644
No 179
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.26 E-value=3.8e-07 Score=95.26 Aligned_cols=84 Identities=17% Similarity=0.033 Sum_probs=60.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
+++++||++.|+... ...+++.++++++|++++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 341 ~i~~~~v~~~y~~~~--------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKE--------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412 (582)
T ss_pred eEEEEEEEEEcCCCC--------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH
Confidence 467899999997421 13677888999999999999999999999999999976 77777776553211
Q ss_pred cccccccCCCCCCcCCh
Q psy16778 77 NIDKMSAKQPLNDEDRR 93 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (433)
.......++.+|++...
T Consensus 413 ~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLF 429 (582)
T ss_pred HHHhcCeEEEcCCCccc
Confidence 01122346777765443
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.24 E-value=2.4e-07 Score=89.05 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=33.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH 73 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~ 73 (433)
+..+|.+|+|+|++||||||+++.|++.+. +.++..|...
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 378899999999999999999999999762 4567766654
No 181
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.22 E-value=3.2e-06 Score=85.34 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc------ccc-cccccCCCCCCcCChhHHH
Q psy16778 29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ------SNI-DKMSAKQPLNDEDRRPWLN 97 (433)
Q Consensus 29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~------~~~-~~~~~~~~~~~~~~~~~~~ 97 (433)
.+++++..+|.+|+|+|++||||||+++.|+..+ |...+.+.+..+. ..+ .....++.++.........
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 4677888999999999999999999999999976 6666654443321 011 1233466666654444444
Q ss_pred HHHHHHHHhhhCCCcEEEEcCc
Q psy16778 98 NINRIIHQLNVDNLTGVLVCSA 119 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~~Vi~~~~ 119 (433)
..+++..........++|++.+
T Consensus 364 V~e~l~~a~~~~~DvVLIDTaG 385 (503)
T 2yhs_A 364 IFDAIQAAKARNIDVLIADTAG 385 (503)
T ss_dssp HHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 4444443333333334555555
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.16 E-value=2.9e-06 Score=81.51 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH 73 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~ 73 (433)
..++.+|+|+|++||||||+++.|+..++ +.+++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34567999999999999999999999874 4568888765
No 183
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.15 E-value=2.6e-07 Score=86.56 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=54.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNI 78 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~ 78 (433)
++++++|++.|+... -....++++++++. |.+++|+|++||||||+.+.|++.+ |...+++.++... .
T Consensus 1 ml~~~~l~~~y~~~~------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~-~- 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI-R- 71 (263)
T ss_dssp CEEEEEEEEEEEEET------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC-S-
T ss_pred CEEEEEEEEEeCCCC------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch-H-
Confidence 478999999996410 00124667778899 9999999999999999999999864 4445554333211 1
Q ss_pred cccccC-CCCCCcC
Q psy16778 79 DKMSAK-QPLNDED 91 (433)
Q Consensus 79 ~~~~~~-~~~~~~~ 91 (433)
.....+ +.+|+..
T Consensus 72 ~~~~i~~~v~Q~~~ 85 (263)
T 2pjz_A 72 NYIRYSTNLPEAYE 85 (263)
T ss_dssp CCTTEEECCGGGSC
T ss_pred HhhheEEEeCCCCc
Confidence 112345 6666644
No 184
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.15 E-value=1.2e-07 Score=88.10 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=44.5
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~ 72 (433)
++++++|++. ..++++++++.+|.+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 4 ~l~~~~l~~~--------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES--------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET--------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEG
T ss_pred EEEEEceEEE--------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEEC
Confidence 4778888765 1355666889999999999999999999999999865 5555555443
No 185
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.08 E-value=3e-07 Score=79.32 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=39.7
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..++++.||. ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 9 ~~~~~~~~~g~----------~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 9 PDEFSMLRFGK----------KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSHHHHHHHHH----------HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH----------HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34556677765 22455667889999999999999999999999999987
No 186
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.07 E-value=8.8e-07 Score=92.50 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=58.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS- 76 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~- 76 (433)
+++++||++.|+... ...++++++++++|++++|+|++||||||+.+.|++.+ |...+++.++....
T Consensus 341 ~i~~~~v~~~y~~~~--------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 341 DLEFRNVTFTYPGRE--------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CEEEEEEEECSSSSS--------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred cEEEEEEEEEcCCCC--------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 467899999997421 12456677889999999999999999999999999976 66777776553211
Q ss_pred cccccccCCCCCCcCCh
Q psy16778 77 NIDKMSAKQPLNDEDRR 93 (433)
Q Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (433)
.......++.+|++...
T Consensus 413 ~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLF 429 (582)
T ss_dssp HHHHHTEEEECSSCCCC
T ss_pred HHHHhhCeEEccCCcCC
Confidence 00112346667765443
No 187
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.04 E-value=5.8e-07 Score=93.79 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=57.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN 77 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~ 77 (433)
.++++||++.|+... ...+++.++++++|+.++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 339 ~i~~~~v~~~y~~~~--------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410 (578)
T ss_dssp CEEEEEEEECSCSSS--------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred eEEEEEEEEEcCCCC--------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence 367889999997522 12556677999999999999999999999999999876 667777766542110
Q ss_pred -ccccccCCCCCCcC
Q psy16778 78 -IDKMSAKQPLNDED 91 (433)
Q Consensus 78 -~~~~~~~~~~~~~~ 91 (433)
......++.+|++.
T Consensus 411 ~~~r~~i~~v~Q~~~ 425 (578)
T 4a82_A 411 GSLRNQIGLVQQDNI 425 (578)
T ss_dssp HHHHHTEEEECSSCC
T ss_pred HHHhhheEEEeCCCc
Confidence 01123456666543
No 188
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.02 E-value=1.1e-05 Score=76.99 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=48.3
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc------ccc-ccccCCCCCCcC-ChhHHH
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS------NID-KMSAKQPLNDED-RRPWLN 97 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~------~~~-~~~~~~~~~~~~-~~~~~~ 97 (433)
+++++..+|.+++|+|++||||||+++.|+..+ |...+.+.++.+.. .+. ....++.++... ..+...
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 456778899999999999999999999999977 66677666554321 111 123455666554 444444
Q ss_pred HHHHHH
Q psy16778 98 NINRII 103 (433)
Q Consensus 98 ~~~~~~ 103 (433)
..+++.
T Consensus 172 v~e~l~ 177 (302)
T 3b9q_A 172 LSKAVK 177 (302)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 189
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.00 E-value=1.2e-06 Score=91.85 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=51.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|+.. ...+++.++++++|++++|+|++||||||+.+.|++.+ |...+++.++.
T Consensus 354 ~i~~~~v~~~y~~~---------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK---------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR 420 (598)
T ss_dssp CEEEEEEECCSSSS---------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred eEEEEEEEEECCCC---------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhh
Confidence 36788999999642 13677888999999999999999999999999999866 66677766553
No 190
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.99 E-value=2e-05 Score=74.97 Aligned_cols=93 Identities=18% Similarity=0.259 Sum_probs=56.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC--Ccccccc------ccccCCC--------CCCc-CChhHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL--HPQSNID------KMSAKQP--------LNDE-DRRPWLNNI 99 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~--~~~~~~~------~~~~~~~--------~~~~-~~~~~~~~~ 99 (433)
++.+|+|+||+||||||++..|++.++..+|+.|.+ +....+. .-..|.+ +.+. ....|.+..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 467899999999999999999999999999999976 2111000 0000111 1221 122344555
Q ss_pred HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc
Q psy16778 100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN 131 (433)
Q Consensus 100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~ 131 (433)
...+......|+..|+.+| +..|.+.+...
T Consensus 82 ~~~i~~i~~~gk~pIlVGG--TglYi~aLl~g 111 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGG--TGLYVNAVIHQ 111 (322)
T ss_dssp HHHHHHHHHTTCEEEEESC--CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEEcC--cHHHHHHHHcC
Confidence 5666677777766655443 34555555443
No 191
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.98 E-value=5.1e-06 Score=80.62 Aligned_cols=61 Identities=16% Similarity=-0.002 Sum_probs=46.8
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
+++++++++.|+. ...+.+++++..++.+++|+|+|||||||+.+.|+..+ |-..+.+.+.
T Consensus 29 ~ie~~~~~~~~~~----------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAV----------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHH----------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred HHeeCCcccccCh----------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 3577788888864 23455666889999999999999999999999999865 5555555443
No 192
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.98 E-value=9.7e-07 Score=83.79 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=32.9
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++|++.+ ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 40 ~l~~~~l~~~~------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 40 SLSFSNFSLLG------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ----------C------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEcC------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35677777642 12456677889999999999999999999999999865
No 193
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.97 E-value=2.7e-05 Score=73.88 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~ 72 (433)
.++.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 3467899999999999999999999999999999975
No 194
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.96 E-value=1.5e-06 Score=91.02 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=58.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc-
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN- 77 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~- 77 (433)
++++||++.|+... +...++++++++++|++++|+|++||||||+.+.|++.+ |...+++.++.....
T Consensus 342 i~~~~v~~~y~~~~-------~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~ 414 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPV 414 (595)
T ss_dssp EEEEEEEEECSSCT-------TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHH
T ss_pred EEEEEEEEEeCCCC-------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHH
Confidence 67899999997421 012466777999999999999999999999999999976 666777765532110
Q ss_pred ccccccCCCCCCcCCh
Q psy16778 78 IDKMSAKQPLNDEDRR 93 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (433)
......++.+|++...
T Consensus 415 ~~~~~i~~v~Q~~~l~ 430 (595)
T 2yl4_A 415 WLRSKIGTVSQEPILF 430 (595)
T ss_dssp HHHHSEEEECSSCCCC
T ss_pred HHHhceEEEccCCccc
Confidence 0112346666765443
No 195
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.95 E-value=2.2e-06 Score=89.46 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|+... ...+++.++++++|++++|+|++||||||+.+.|++.+ |...+++.++.
T Consensus 341 ~i~~~~v~~~y~~~~--------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408 (587)
T ss_dssp CEEEEEEEECSSSSS--------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred cEEEEEEEEEcCCCC--------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc
Confidence 467889999996422 12556677999999999999999999999999999876 66778777664
No 196
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.95 E-value=1.4e-06 Score=83.09 Aligned_cols=49 Identities=14% Similarity=-0.029 Sum_probs=41.9
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++|++.|+ ...++++++++.+|.+++|+|++||||||+++.|++.+
T Consensus 102 i~~~~vs~~y~-----------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITF-----------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHH-----------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-----------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 56778888885 12466677999999999999999999999999999987
No 197
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.95 E-value=2.1e-05 Score=76.69 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=55.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc------cc-cccccCCCCCCcC-ChhHHH
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS------NI-DKMSAKQPLNDED-RRPWLN 97 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~------~~-~~~~~~~~~~~~~-~~~~~~ 97 (433)
+++++..+|.+|+|+|++||||||+++.|+..+ |...+.+.++.+.. .+ .....++.++... ..+...
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 456778899999999999999999999999977 66677666554321 11 1123455666554 445444
Q ss_pred HHHHHHHHhhhCCCcEEEEcCc
Q psy16778 98 NINRIIHQLNVDNLTGVLVCSA 119 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~~Vi~~~~ 119 (433)
..+++...........+++..+
T Consensus 229 v~e~l~~~~~~~~d~~lldt~G 250 (359)
T 2og2_A 229 LSKAVKRGKEEGYDVVLCDTSG 250 (359)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHhCCCHHHHHHhcC
Confidence 4444433322222234555544
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.89 E-value=3.2e-05 Score=73.86 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc------c-cccccCCCCCCcCChhHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN------I-DKMSAKQPLNDEDRRPWLNNINRIIH 104 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
.+|.+|+|+|++||||||+++.|+..+ |...+.+-++..... + .....++.++.....+.....+++..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 368899999999999999999999877 666666655543211 1 11234566676655555544444433
Q ss_pred HhhhCCCcEEEEcCc
Q psy16778 105 QLNVDNLTGVLVCSA 119 (433)
Q Consensus 105 ~~~~~~~~~Vi~~~~ 119 (433)
........++++..+
T Consensus 180 ~~~~~~d~~llDt~G 194 (304)
T 1rj9_A 180 MKARGYDLLFVDTAG 194 (304)
T ss_dssp HHHHTCSEEEECCCC
T ss_pred HHhCCCCEEEecCCC
Confidence 322222234555544
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.88 E-value=9e-06 Score=73.02 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
+++.+|.+++|+|+|||||||+.+.|++.+....++.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~ 51 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV 51 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcc
Confidence 6789999999999999999999999999875444443
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.82 E-value=4.4e-05 Score=73.60 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=50.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccccc-----ccccC--CCCCCcCChhHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNID-----KMSAK--QPLNDEDRRPWLNNINRII 103 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~ 103 (433)
..+|.+|+|+|++||||||+.+.|+..+ |-..+.+.++....... ....+ +.++.....+.....+++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4678999999999999999999999977 55555555543321110 11223 3444444445555555544
Q ss_pred HHhhhCCCcEEEEcCc
Q psy16778 104 HQLNVDNLTGVLVCSA 119 (433)
Q Consensus 104 ~~~~~~~~~~Vi~~~~ 119 (433)
.........++++..+
T Consensus 206 ~~~~~~~d~vliDtaG 221 (328)
T 3e70_C 206 HAKARGIDVVLIDTAG 221 (328)
T ss_dssp HHHHHTCSEEEEEECC
T ss_pred HHHhccchhhHHhhcc
Confidence 4433333345566554
No 201
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.82 E-value=8.3e-06 Score=85.20 Aligned_cols=47 Identities=23% Similarity=0.191 Sum_probs=39.7
Q ss_pred ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++|++.||... ..+.+++ ++.+|.+++|+|++||||||+.++|++.+
T Consensus 95 ~~ls~~yg~~~---------~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 95 EDCVHRYGVNA---------FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp GSEEEECSTTC---------CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCeEEEECCCC---------eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 88899997521 2466777 78999999999999999999999999865
No 202
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.81 E-value=2.1e-06 Score=97.64 Aligned_cols=65 Identities=26% Similarity=0.261 Sum_probs=53.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|...+ +...++++++++++|+.|+|+|++||||||+.+.|.+.+ |...+|+-++.
T Consensus 1076 ~I~f~nVsf~Y~~~~-------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp CEEEEEEEECCTTSC-------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred eEEEEEEEEeCCCCC-------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence 367899999996422 122566777999999999999999999999999999876 77888887764
No 203
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.78 E-value=1.2e-05 Score=82.91 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=39.6
Q ss_pred ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++|++.||... ..+.+++ ++.+|.+++|+|++||||||+.++|++.+
T Consensus 25 ~~ls~~yg~~~---------~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 25 EDCVHRYGVNA---------FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCEEEECSTTC---------CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCcEEEECCcc---------ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58999997521 2466777 89999999999999999999999999865
No 204
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.76 E-value=3e-06 Score=96.10 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=51.6
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||++.|+... +...++++++++++|+.++|+|++||||||+.+.|.+.+ |...+++.++.
T Consensus 387 ~i~~~~v~~~y~~~~-------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp CEEEEEEEECCSSTT-------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG
T ss_pred eEEEEEEEEEcCCCC-------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHH
Confidence 367889999997422 012566677999999999999999999999999999876 66778776653
No 205
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=97.75 E-value=8.7e-05 Score=82.44 Aligned_cols=161 Identities=14% Similarity=0.109 Sum_probs=102.6
Q ss_pred cCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEE--ecCC---------------------
Q psy16778 234 RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYIL--STIS--------------------- 290 (433)
Q Consensus 234 ~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~--s~~s--------------------- 290 (433)
..+..+|++++++|.+++.||++||.++. +....++++...|..+++ |...
T Consensus 526 ~ev~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~ 599 (1025)
T 1gte_A 526 TPVDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPM 599 (1025)
T ss_dssp CGGGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSC
T ss_pred cccccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccc
Confidence 34567899999999999999999997663 334556777777877765 1110
Q ss_pred ---------------CCC-------HHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCcccc
Q psy16778 291 ---------------TTS-------IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA 348 (433)
Q Consensus 291 ---------------~~~-------~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~ 348 (433)
+.. ++++.+..++.+.|++++...+.+...+.+++++++|+.+|.++++.|.. .+.+
T Consensus 600 ~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~ 678 (1025)
T 1gte_A 600 YGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGER 678 (1025)
T ss_dssp CSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC--
T ss_pred cCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCC
Confidence 011 24444445667889999988888888889999999999999999987764 2222
Q ss_pred ccccccCCCccchHHHHHh----hCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 349 DIRNKFNMPSHLNIEELAE----KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 349 ~~~~~~~~~~~~s~e~i~~----~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
..-..+. .....+.++.+ .+. -+.+..+ ..+-.-..+++++++++|+++|.+|
T Consensus 679 ~~G~~~~-~~~~~~~~iv~~v~~~~~-~Pv~vK~--~~~~~~~~~~a~~~~~~G~d~i~v~ 735 (1025)
T 1gte_A 679 GMGLACG-QDPELVRNICRWVRQAVQ-IPFFAKL--TPNVTDIVSIARAAKEGGADGVTAT 735 (1025)
T ss_dssp ---SBGG-GCHHHHHHHHHHHHHHCS-SCEEEEE--CSCSSCHHHHHHHHHHHTCSEEEEC
T ss_pred Ccccccc-cCHHHHHHHHHHHHHhhC-CceEEEe--CCChHHHHHHHHHHHHcCCCEEEEe
Confidence 1111110 01112233322 221 1222222 2233336778999999999999994
No 206
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.73 E-value=0.0001 Score=70.81 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778 29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL 72 (433)
Q Consensus 29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~ 72 (433)
.+++++..++.+|+|+|++|+||||++..|+..+ .+.+++.|..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3566777889999999999999999999999877 2345666654
No 207
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.70 E-value=4.2e-06 Score=84.51 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C-C-eEEeCC
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G-V-KFIDGD 70 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g-~-~~id~D 70 (433)
.++++.+|++++|+|++||||||++|+|++.+ | . .+++++
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 44667899999999999999999999999966 7 6 778774
No 208
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.68 E-value=0.00014 Score=71.60 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~ 72 (433)
+.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 35899999999999999999999999999999874
No 209
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.67 E-value=5.2e-06 Score=94.40 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=51.7
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
.++++||+|.|.... +...+++.++++++|+.++|+|++||||||+.+.|.+.+ |...+|+-++.
T Consensus 415 ~I~~~nvsF~Y~~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp CEEEEEEEECCSSST-------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred cEEEEEeeeeCCCCC-------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccch
Confidence 367889999996421 122566777999999999999999999999999999877 66777776553
No 210
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.61 E-value=1.6e-05 Score=90.22 Aligned_cols=64 Identities=27% Similarity=0.322 Sum_probs=51.5
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH 73 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~ 73 (433)
++++||++.|+... +...++++++++.+|++++|+|++||||||+++.|.+.+ |...+++.++.
T Consensus 1031 i~~~~v~~~y~~~~-------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRP-------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp EEEEEEEBCCSCGG-------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT
T ss_pred EEEEEEEEECCCCC-------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcc
Confidence 67888999996411 123688999999999999999999999999999999866 55667766653
No 211
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.61 E-value=5.6e-06 Score=90.18 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=43.1
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++|+++.|+... ...+.++++++..|.+++|+|++||||||+.+.|++.+
T Consensus 671 mL~v~nLs~~Y~g~~--------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTS--------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEEEECCTTCS--------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eEEEEeeEEEeCCCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999996421 12455677889999999999999999999999999865
No 212
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.60 E-value=1.5e-05 Score=86.80 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=40.4
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
+...++++.||. ...++++++++.+|.+++|+|++||||||+.+.|++
T Consensus 436 L~~~~ls~~yg~----------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 436 LCNCEFSLAYGA----------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEeeEEEEECC----------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345578899976 235667778999999999999999999999999995
No 213
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.60 E-value=2.3e-05 Score=69.95 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++++++.|+. ..+.+ +...++..|+|+|++||||||+.+.|.+.
T Consensus 3 ~l~~~~~~~~~~~-----------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 3 NLNYQQTHFVMSA-----------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp --------CEEEE-----------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred chhhhhhhheeec-----------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999963 12333 66889999999999999999999988753
No 214
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.60 E-value=2.2e-05 Score=78.82 Aligned_cols=51 Identities=12% Similarity=-0.059 Sum_probs=43.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|++ +...++++ +++.+|.+++|+|++||||||+.+.|++..
T Consensus 131 ~l~~~~v~~~~~t---------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 131 PLQRTPIEHVLDT---------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTTSCCCCSBCCC---------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceEEeccceecCC---------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4677888888863 13467778 999999999999999999999999999976
No 215
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.54 E-value=2.4e-05 Score=76.14 Aligned_cols=51 Identities=14% Similarity=-0.075 Sum_probs=43.4
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++++++++.|+. +...++.+ +++.+|.+++|+|++||||||+.+.|++.+
T Consensus 45 ~i~~~~l~~~~~t---------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 45 PLLRQVIDQPFIL---------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp STTCCCCCSEECC---------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CeeecccceecCC---------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677888888863 14567777 899999999999999999999999999976
No 216
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.53 E-value=2.1e-05 Score=81.02 Aligned_cols=60 Identities=13% Similarity=0.046 Sum_probs=44.7
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHH--HHHHh----CCeEEeCCCC
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGES--LATRL----GVKFIDGDHL 72 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~--La~~l----g~~~id~D~~ 72 (433)
++.+++.+..+. ...+++.++ .+.+|.+++|+|+|||||||+++. ++..+ |..++++.+.
T Consensus 13 ~~~~~~~~~~~g----------~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 13 SEHQAIAKMRTM----------IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp -CCSSCCEECCC----------CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred ccccccccccCC----------chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 344455555544 446777888 899999999999999999999999 45544 6677877653
No 217
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.53 E-value=2.8e-05 Score=80.23 Aligned_cols=49 Identities=27% Similarity=0.201 Sum_probs=38.8
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++++.|+. ..+...++++.+|.+++|+|++||||||+++.|++.+
T Consensus 288 l~~~~l~~~~~~-----------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 288 VTYPRLVKDYGS-----------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEECCEEEEETT-----------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeEEEEECC-----------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567777777754 1234456678899999999999999999999999854
No 218
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.52 E-value=2.6e-05 Score=81.41 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=39.0
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+++++++++.|+.. .+...++++.+|.+++|+|++||||||+.+.|++.+
T Consensus 357 ~l~~~~l~~~~~~~-----------~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 357 LVEYPRLVKDYGSF-----------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEECCEEEECSSC-----------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeceEEEecce-----------EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35677777777641 233455678899999999999999999999999854
No 219
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.49 E-value=2.7e-05 Score=80.18 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=38.6
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++++.|+.. .+...++++.+|++++|+|++||||||+++.|++.+
T Consensus 270 l~~~~l~~~~~~~-----------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 270 MKWTKIIKKLGDF-----------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEECCEEEEETTE-----------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcceEEEECCE-----------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5667777777651 122335678999999999999999999999999865
No 220
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.46 E-value=6.6e-05 Score=65.77 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVK 65 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~ 65 (433)
++++|+|++||||||+++.|++.+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 578999999999999999999998744
No 221
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.46 E-value=4.6e-05 Score=71.61 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=31.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
+.+++++..+| ++|+|+|||||||+++.|++.++..++
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 44556677777 999999999999999999999876554
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.46 E-value=2e-05 Score=73.02 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
+.+.+++..+| ++|+|++||||||+++.+++.++..++
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44455666666 999999999999999999998865554
No 223
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.44 E-value=0.0003 Score=67.70 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
.+++.|+|-|+-||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45689999999999999999999998854
No 224
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.40 E-value=2.7e-05 Score=73.25 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
+.+.+++..+| ++|+|++||||||+++.++..++..++
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 34455666666 999999999999999999998865554
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.40 E-value=0.00035 Score=66.57 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCC
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHL 72 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~ 72 (433)
++...++.+|+|+|++||||||+++.|+..+ | +.+++.|..
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 3445778999999999999999999999877 2 345565543
No 226
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.39 E-value=3e-05 Score=77.05 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=35.2
Q ss_pred cccccceeeeccCCccceeeeeecccCCCCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHH
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTV--FVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--I~l~G~~GsGKSTla~~La~~ 61 (433)
+++.+ ++.|+. .. +.++++++.+|.+ ++|+|++||||||+.+.|++.
T Consensus 17 l~~~~-~~~y~~----------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 17 VPLAG-HVGFDS----------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCCCC-CC-CC------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEee-EEEECC----------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45555 677764 22 5566788999999 999999999999999999875
No 227
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.37 E-value=6.8e-05 Score=72.54 Aligned_cols=28 Identities=39% Similarity=0.678 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKF 66 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~ 66 (433)
..|+|+|++||||||+++.|++.+++.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4699999999999999999999999888
No 228
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.36 E-value=0.00014 Score=68.90 Aligned_cols=40 Identities=20% Similarity=0.085 Sum_probs=33.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEE-eCCCCCc
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFI-DGDHLHP 74 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~i-d~D~~~~ 74 (433)
.+++.+|+|+|++||||||+++.|++.++ ...+ ..|.++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 46788999999999999999999999874 4455 8888764
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.00014 Score=61.62 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~ 73 (433)
++..++|+|++||||||+++.++..+ | ..+++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 78899999999999999999999987 6 5677766654
No 230
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=97.34 E-value=0.00073 Score=65.81 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=92.2
Q ss_pred hhhcceeecccccCCC--CCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778 222 ALKVLRIRPRVMRDLS--KRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA 298 (433)
Q Consensus 222 a~~~~~l~pr~l~~~~--~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva 298 (433)
.|+++.|+|. +.++. ++|++|.+. +..+..||+.+|+.. . .+..+|.+.+++|-.-++.. +.+.|+..
T Consensus 14 ~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~--v----t~~~lA~avA~~GGlgii~~--~~s~e~~~ 84 (361)
T 3khj_A 14 TFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDT--V----TEHLMAVGMARLGGIGIIHK--NMDMESQV 84 (361)
T ss_dssp CGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTT--T----CSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCC--C----CcHHHHHHHHHcCCCeEEec--CCCHHHHH
Confidence 5788999998 56654 588999998 789999999999874 2 23466776666666555543 45566654
Q ss_pred Hh------CCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCc
Q psy16778 299 EK------TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQT 372 (433)
Q Consensus 299 ~~------~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~ 372 (433)
+. ....+.-..+.... .+.++.+.++|+..|++++ +. |... . ....++++.+..+
T Consensus 85 ~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~--a~-G~~~-----~----~~~~i~~i~~~~~-- 145 (361)
T 3khj_A 85 NEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDS--AH-GHSL-----N----IIRTLKEIKSKMN-- 145 (361)
T ss_dssp HHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECC--SC-CSBH-----H----HHHHHHHHHHHCC--
T ss_pred HHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeC--CC-CCcH-----H----HHHHHHHHHHhcC--
Confidence 31 12222333443322 3567777889999888654 11 1110 0 0011233333221
Q ss_pred chhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 373 TKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 373 ~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
+.+......+.+.++++.++|+++|++++
T Consensus 146 -----~~Vivg~v~t~e~A~~l~~aGaD~I~VG~ 174 (361)
T 3khj_A 146 -----IDVIVGNVVTEEATKELIENGADGIKVGI 174 (361)
T ss_dssp -----CEEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred -----CcEEEccCCCHHHHHHHHHcCcCEEEEec
Confidence 22222233577889999999999999964
No 231
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.33 E-value=9.1e-05 Score=64.62 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+...++..++|+|++||||||+++.++..+
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999999876
No 232
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00012 Score=76.43 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
...+|.+++|+|++||||||+.++|++.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999999999999865
No 233
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.28 E-value=0.00015 Score=74.63 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=34.6
Q ss_pred cceeeeccCCccceeeeeecccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 7 GNWRYWGMWPPQYVVTLIMTTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..+.||.+.+. -+.+ ...+|.+++|+|++||||||+.++|++.+
T Consensus 4 ~~~~~~~~~~f~-----------l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 4 EVIHRYKVNGFK-----------LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CEEEESSTTSCE-----------EECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCceecCCCcee-----------ecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 567788875531 1113 35788999999999999999999999865
No 234
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.25 E-value=8.6e-05 Score=73.95 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.++.+|+|+|++||||||+.+.|.+.+ |...+..|.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 567899999999999999999999977 4455655554
No 235
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.23 E-value=0.00022 Score=63.14 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
-.+..|+|+|++||||||++..|+++.+ .+++.|.+.
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 3578899999999999999999999755 888888764
No 236
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.22 E-value=9.9e-05 Score=72.47 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=35.0
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
+.++++.+.++..|+|+|++||||||+++.|++.++..++.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33455778999999999999999999999999988776665
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.21 E-value=0.00031 Score=68.67 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=33.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEe
Q psy16778 29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFID 68 (433)
Q Consensus 29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id 68 (433)
..+++.+.+|.+++|+|++||||||+.+.|++.+ |...++
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3455667899999999999999999999999876 555555
No 238
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.21 E-value=0.00014 Score=73.46 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=37.2
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL 72 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~ 72 (433)
.+.++++++.+ .+++|+|++||||||+.+.|+..+ |...+++.++
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 45566688999 999999999999999999999976 5666666554
No 239
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.19 E-value=3.2e-05 Score=74.85 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKF 66 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~ 66 (433)
..++|+|++|+||||+++.+++.++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 6899999999999999999999998754
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.00024 Score=66.22 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL 72 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~ 72 (433)
..+|.+++|+|++||||||+.+.|++.+ |...++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 6889999999999999999999999865 3445555443
No 241
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.15 E-value=0.0002 Score=70.06 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=32.4
Q ss_pred CCCCCCCC--CeEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778 30 SPSGEGSP--STVFVIMGVSGSGKSTIGESLATRLGVKF 66 (433)
Q Consensus 30 ~~~~~~~~--~~~I~l~G~~GsGKSTla~~La~~lg~~~ 66 (433)
.+++++.+ +..++|+|++||||||+++.|++.+....
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 47778888 99999999999999999999999876543
No 242
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.15 E-value=0.00018 Score=64.58 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.+|.+++|+|++||||||+.+.|+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999999985
No 243
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.15 E-value=0.00012 Score=69.24 Aligned_cols=39 Identities=23% Similarity=0.119 Sum_probs=34.0
Q ss_pred eecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 24 IMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 24 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+...+++.++.+.+|.+++|+|+|||||||+++.++..+
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345667777889999999999999999999999999865
No 244
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.00021 Score=63.17 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
|.+++|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4689999999999999999999987
No 245
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.12 E-value=0.00038 Score=63.64 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHH--HH-h---CCeEEeCCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLA--TR-L---GVKFIDGDHL 72 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La--~~-l---g~~~id~D~~ 72 (433)
.+.+|.+++|+|++||||||+++.++ .. . +..+++.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 57899999999999999999999998 43 1 4455655543
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.00022 Score=64.37 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=29.9
Q ss_pred cccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 26 TTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 26 ~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+++... .+.+|.+++|+|++||||||+++.++..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34445443 57789999999999999999999999754
No 247
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.12 E-value=0.00038 Score=64.33 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
+..++|+|++|+||||+++.+++.++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44599999999999999999999998766543
No 248
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.12 E-value=0.00023 Score=62.59 Aligned_cols=45 Identities=20% Similarity=0.117 Sum_probs=25.1
Q ss_pred cceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 18 QYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
-++.+++|...............|+|+|++||||||+.+.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 9 HHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp ---------------CCCSEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cCCCCCCCcccCCcccccCcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345667766666555555555789999999999999999999853
No 249
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.00024 Score=64.19 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.7
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.-+.+|.+++|+|+|||||||+++.|+..+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999999843
No 250
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.09 E-value=0.00034 Score=60.96 Aligned_cols=31 Identities=39% Similarity=0.492 Sum_probs=26.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
++++..+ +.+|+|++||||||+.+.|.-.++
T Consensus 21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 3556666 899999999999999999998775
No 251
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.07 E-value=0.00034 Score=66.28 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
.+.+..++|.|+||+|||++++.+++.+|..++..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45567899999999999999999999998876543
No 252
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.05 E-value=0.00049 Score=65.36 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
...+..|+|+|++|+||||+++.+++.++..++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 45677899999999999999999999998877654
No 253
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=97.03 E-value=0.0056 Score=59.00 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEe
Q psy16778 238 KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS 287 (433)
Q Consensus 238 ~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s 287 (433)
.+|++++++|.+++.||++|+ | ++++++ ..+++++.|+.++.+
T Consensus 42 ~~~l~~~i~g~~l~npi~~aa-g----~~~~~~--~~~~~a~~G~g~i~~ 84 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAA-G----LDKDGE--CIDALGAMGFGSIEI 84 (336)
T ss_dssp CCCCCEEETTEEESSSEEECT-T----SSTTCC--CHHHHHHTTCSEEEE
T ss_pred CCCCCeEECCEEcCCCcEeCc-c----cCCcHH--HHHHHHHcCccEEEe
Confidence 489999999999999999994 3 366676 577788889887543
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.91 E-value=0.0007 Score=62.41 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
..+..++|+|++|+||||+++.+++.++.+++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 455679999999999999999999999877654
No 255
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.89 E-value=0.0008 Score=58.10 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
-.+.-|+|+|+||+||||++..|.++ |+.++.-|.+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~ 50 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID 50 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence 35678999999999999999999985 99999888764
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.00091 Score=62.61 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..+..++|.|++|+||||+++.+++.++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567799999999999999999999998887653
No 257
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00077 Score=67.10 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..+.-|+|.||||+|||++++.+|..+|.+++..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45567999999999999999999999999987543
No 258
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00078 Score=67.14 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..+.-|+|.||||||||++++.+|..+|.+++..+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 45678999999999999999999999999886543
No 259
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.00087 Score=63.20 Aligned_cols=32 Identities=25% Similarity=0.619 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
.+..++|.|++|+||||+++.+++.++..++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 45789999999999999999999999887654
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.86 E-value=0.0058 Score=60.91 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
++.+|+++|++||||||++..|+..+ .+.+++.|...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 57899999999999999999999866 34568888764
No 261
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.85 E-value=0.00059 Score=63.82 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
-.++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~ 39 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK 39 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence 368999999999999999999976 444444433
No 262
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.84 E-value=0.00059 Score=68.17 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH 71 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~ 71 (433)
+..|+|+|+||+||||+++.||+.++.+++..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 4579999999999999999999999999887664
No 263
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00084 Score=66.96 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..+.-|+|.||||||||++++.+|..+|.+++..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999999988653
No 264
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.0008 Score=68.42 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=31.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
.+.+.++...+| ++|+|+||+||||+++.++..++.+++.
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 344555555555 9999999999999999999988766543
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.81 E-value=0.0007 Score=66.05 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
.+..|+|+|+||+|||++++.+++.++.+++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4568999999999999999999999998887654
No 266
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.80 E-value=0.00025 Score=73.17 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=30.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
.+++. ++.+++|+|+||+||||+++.+++.++..++.
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 33444 68899999999999999999999999776543
No 267
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.00037 Score=60.53 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++|+|++||||||+++.|.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999976
No 268
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00098 Score=65.59 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..+.-|+|.||||+|||++++.+|..+|.+++..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 4456799999999999999999999999998654
No 269
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.0032 Score=59.38 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT 112 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
+.+.+|+|-|.-||||||..+.|.+.+ |+.++....-... .. . ..++ ......+-..|..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~e----E~--~--------~~yl---~R~~~~LP~~G~I 146 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTET----ER--G--------QWYF---QRYVATFPTAGEF 146 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHH----HH--T--------SCTT---HHHHTTCCCTTCE
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChH----HH--h--------chHH---HHHHHhcccCCeE
Confidence 467899999999999999999999988 5555544332110 10 0 0111 1122223356655
Q ss_pred EEEEcCc------------cc-HHHHH---H-------HHhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778 113 GVLVCSA------------LR-RNYRD---I-------IRNNNR-VVFIYLKAEFGVILSRLQKRAEH 156 (433)
Q Consensus 113 ~Vi~~~~------------~~-~~~~~---~-------l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~ 156 (433)
+|.+-+. .. .++.+ . +.+.+. ++++||+.|+++..+|+.+|...
T Consensus 147 vIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d 214 (304)
T 3czq_A 147 VLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD 214 (304)
T ss_dssp EEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred EEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence 5555322 11 11212 1 222222 68899999999999999888643
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.77 E-value=9.4e-05 Score=71.43 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD 70 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D 70 (433)
+++.+.+|.+++|+|++||||||+.+.|++.+ |...++..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 44556788999999999999999999999876 55556543
No 271
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=96.77 E-value=0.011 Score=56.42 Aligned_cols=153 Identities=9% Similarity=0.004 Sum_probs=92.2
Q ss_pred CCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEe-c--------------------------CCC
Q psy16778 239 RTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS-T--------------------------IST 291 (433)
Q Consensus 239 ~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s-~--------------------------~s~ 291 (433)
+|++++++|.+++.||++|+.. ...+++. .+.+.+.|+.++.. + +.+
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~----~~~~~~~--~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGV----LCSTEED--LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTS----SCSSHHH--HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCC----CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 4889999999999999999632 2334443 56678888887543 1 122
Q ss_pred CCHHH----HHHh-C-CCCcceEEEeeccCHHHHHHHHHHHHHcCCc---EEEEeeeecccCccccccccccCCCccchH
Q psy16778 292 TSIEE----LAEK-T-PQTTKWFQLYIYRDREITKSLVQRAEKAGYK---ALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362 (433)
Q Consensus 292 ~~~ee----va~~-~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~---~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~ 362 (433)
...+. +... . ++.+...|+.. .+.+...+.+++++++|+. .+-+++..|.. .+.++.-. .+ . .+
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~~~g~---~~-~-~~ 148 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSISG-LSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKPQVAY---DF-E-AM 148 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCCCGGG---SH-H-HH
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeCC-CCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCchhhcC---CH-H-HH
Confidence 33333 3222 1 34556777764 3445555788888888999 89998876665 22211100 00 0 12
Q ss_pred HHHH----hhCCCcchhhhhhccCCHHHHHHHHHHHHHcC-CcEEEEe
Q psy16778 363 EELA----EKTPQTTKWFQLYIYRDREITKSLVQRAEKAG-YKALVLT 405 (433)
Q Consensus 363 e~i~----~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G-~~aivlT 405 (433)
.++. +... -+.+..+....+..-..+.+++++++| +++|+++
T Consensus 149 ~~ii~~vr~~~~-~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 149 RTYLQQVSLAYG-LPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp HHHHHHHHHHHC-SCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred HHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEe
Confidence 2222 2222 233444444445566677799999999 9999875
No 272
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.75 E-value=0.00053 Score=75.64 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=29.4
Q ss_pred cccCCCCCCCCC-------CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 26 TTTLSPSGEGSP-------STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 26 ~~~~~~~~~~~~-------~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..+++++++... |.+++|+||+||||||+.|.+ +.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 356677777765 899999999999999999998 53
No 273
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.73 E-value=0.00045 Score=68.71 Aligned_cols=44 Identities=23% Similarity=0.011 Sum_probs=30.3
Q ss_pred ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
++.+.+|++.|+... .+.++++ .|+|+|++||||||+.+.|.+.
T Consensus 11 ~l~~~~l~~~y~~~~----------vl~~vsf------~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 11 YVGFANLPNQVYRKS----------VKRGFEF------TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp ----CCCCCCTTTTT----------CC-CCCE------EEEEECCTTSSHHHHHHHHTTC
T ss_pred cEEEEecceeECCEE----------EecCCCE------EEEEECCCCCcHHHHHHHHhCC
Confidence 467888999887622 3334444 3599999999999999999874
No 274
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0015 Score=56.47 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999987
No 275
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.67 E-value=0.0011 Score=60.32 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.-+.+|.+++|+|++||||||+++.++..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999999999999984
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.67 E-value=0.0041 Score=61.97 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
.++.+|+|+|++||||||++..|+..+ .+.+++.|...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 357899999999999999999999876 33467777654
No 277
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=96.67 E-value=0.0028 Score=61.73 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=92.4
Q ss_pred hhhcceeecccccCCC--CCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778 222 ALKVLRIRPRVMRDLS--KRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA 298 (433)
Q Consensus 222 a~~~~~l~pr~l~~~~--~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva 298 (433)
.|+++.|+|. +.++. ++|++|.+. +..+..||+.+|+.. . .+..+|.+.+++|..-++.. +.+.|+..
T Consensus 15 ~fddv~lvp~-~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~--v----s~~~lA~avA~aGGlg~i~~--~~s~e~~~ 85 (366)
T 4fo4_A 15 TFDDVLLVPA-HSTVLPNTADLRTRLTKNIALNIPMVSASMDT--V----TEARLAIALAQEGGIGFIHK--NMSIEQQA 85 (366)
T ss_dssp CGGGEEECCC-CCCCCGGGCBCCEEEETTEEESSSEEECCCTT--T----CSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred CcceEEEECC-CCCCChhhcccceecccccccCCCEEeCCCCC--C----ChHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence 4677888886 44443 688999987 578999999999874 2 34567877777777666653 35667654
Q ss_pred HhC----CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch---HHHHHhhCCC
Q psy16778 299 EKT----PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEKTPQ 371 (433)
Q Consensus 299 ~~~----~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~~~~ 371 (433)
+.. ...+.-...-.....+ ..+.++.+.++|+..|++++. .|. +... ++.+.+..++
T Consensus 86 ~~i~~vk~~~~l~vga~vg~~~~-~~~~~~~lieaGvd~I~idta---~G~------------~~~~~~~I~~ik~~~p~ 149 (366)
T 4fo4_A 86 AQVHQVKISGGLRVGAAVGAAPG-NEERVKALVEAGVDVLLIDSS---HGH------------SEGVLQRIRETRAAYPH 149 (366)
T ss_dssp HHHHHHHTTTSCCCEEECCSCTT-CHHHHHHHHHTTCSEEEEECS---CTT------------SHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCceeEEEEeccChh-HHHHHHHHHhCCCCEEEEeCC---CCC------------CHHHHHHHHHHHHhcCC
Confidence 321 1111122222222211 235677778899999887651 111 1111 2333333322
Q ss_pred cchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778 372 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406 (433)
Q Consensus 372 ~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv 406 (433)
+.+......+.+.+++++++|+++|++.+
T Consensus 150 ------v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~ 178 (366)
T 4fo4_A 150 ------LEIIGGNVATAEGARALIEAGVSAVKVGI 178 (366)
T ss_dssp ------CEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred ------CceEeeeeCCHHHHHHHHHcCCCEEEEec
Confidence 22222234578889999999999999954
No 278
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.67 E-value=0.0013 Score=61.30 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..+..++|+|++|+||||+++.+++.++.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456899999999999999999999998887654
No 279
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0014 Score=65.59 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
...+.-|+|.||||+|||++++.+|..++.+++..+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 356678999999999999999999999999986543
No 280
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=96.64 E-value=0.023 Score=53.97 Aligned_cols=152 Identities=9% Similarity=0.020 Sum_probs=88.6
Q ss_pred ceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCC-C--------------------------C
Q psy16778 241 LVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST-T--------------------------S 293 (433)
Q Consensus 241 ~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~-~--------------------------~ 293 (433)
++++++|.+++.||++||. . .+.++|. .+.+.+.|.-++..-.-+ . .
T Consensus 2 l~~~i~g~~l~npv~~Aag-~---~~~~~~~--~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNASG-V---HCMTIED--LEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECTT-S---SCSSHHH--HHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECCC-C---CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 5789999999999999962 2 2344543 566777777664321111 1 1
Q ss_pred HH----HHHHh---C-CCCcceEEEeeccCHHHHHHHHHHHHHcCCc-EEEEeeeecccCccccccccccCCCccchHHH
Q psy16778 294 IE----ELAEK---T-PQTTKWFQLYIYRDREITKSLVQRAEKAGYK-ALVLTVDTNVFGTRYADIRNKFNMPSHLNIEE 364 (433)
Q Consensus 294 ~e----eva~~---~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~-~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~ 364 (433)
.+ ++... . ++.+...|+.. .+.+...+.+++++++|+. ++.+.+..|.. .+.+. +.. ..-.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~~----~g~-~~e~~~~ 148 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIAG-MSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEPQ----LAY-DFEATEK 148 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEECC-SSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCCC----GGG-CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCC-CCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCccc----ccC-CHHHHHH
Confidence 23 22211 1 13456667653 3445556788888899999 89998876665 22211 110 0111233
Q ss_pred HHhhC-C--CcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 365 LAEKT-P--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 365 i~~~~-~--~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
+.+.. . +-+.+..+....+.....+.++.++++|+++|+++
T Consensus 149 iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 149 LLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp HHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred HHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 33321 1 22344445444455566777899999999999884
No 281
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.64 E-value=0.00046 Score=73.15 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=27.7
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIG 55 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla 55 (433)
..++++++++.+|.+++|+|+|||||||++
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 357889999999999999999999999996
No 282
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.64 E-value=0.0013 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345688999999999999999999987
No 283
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0015 Score=64.72 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..+.-|+|.||||+|||++++.+|..++.+++..+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999886543
No 284
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.64 E-value=0.002 Score=60.99 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=26.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+++ ++.+|+|+|++|+||||+++.|+..+
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455 88999999999999999999999876
No 285
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.63 E-value=0.00067 Score=60.71 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDH 71 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~ 71 (433)
-+.+|.+++|+|++||||||++..++...| +.+++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 578899999999999999999999987333 34555544
No 286
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.63 E-value=0.00034 Score=74.15 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=30.2
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLA 59 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La 59 (433)
..++++++++.+|++++|+|+|||||||+.+.+.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3578899999999999999999999999997543
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.63 E-value=0.0012 Score=64.71 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++.+|+|+|++||||||+.+.|++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5778999999999999999999999865
No 288
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.63 E-value=0.00064 Score=73.13 Aligned_cols=51 Identities=20% Similarity=0.003 Sum_probs=36.7
Q ss_pred eeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 10 RYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..=|+|++.....-+...+++++++ ..|.+++|+|++||||||+.|.++..
T Consensus 580 i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 580 ITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 3345566532111122356777887 78899999999999999999999974
No 289
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.62 E-value=0.00083 Score=73.25 Aligned_cols=53 Identities=17% Similarity=-0.080 Sum_probs=38.2
Q ss_pred ceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 8 NWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
+...-++|+......-+.-.+++++++..+|.+++|+||+||||||+.|.++.
T Consensus 632 i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 632 IILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455666653322112235677888889999999999999999999999854
No 290
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.00063 Score=70.96 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCC-----eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 27 TTLSPSGEGSPS-----TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 27 ~~~~~~~~~~~~-----~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+.+++++...| ++++|+|++||||||+++.|++.+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 455666666555 789999999999999999999854
No 291
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.60 E-value=0.0012 Score=64.62 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
.+..++|+|++|+||||+++.+++.++.+++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 3457999999999999999999999988876544
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.57 E-value=0.0015 Score=56.74 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..+++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999865
No 293
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.56 E-value=0.002 Score=61.73 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
.+..++|.|++|+|||++++.+++.++..++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 456899999999999999999999998887654
No 294
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0011 Score=60.38 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCC
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDH 71 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~ 71 (433)
..-+.+|.+++|+|++||||||++..++... ++.+++.+.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4456788999999999999999988776543 344555443
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.56 E-value=0.0016 Score=56.36 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+|+|+|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.56 E-value=0.0014 Score=63.70 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++.+|+|+|++||||||+.+.+++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 566799999999999999999998876
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.0019 Score=61.25 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CeEEeCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL----G--VKFIDGDHL 72 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g--~~~id~D~~ 72 (433)
.++.+|+|+|++||||||++..|+..+ | +.+++.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 467899999999999999999999765 4 346777764
No 298
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.54 E-value=0.0012 Score=70.63 Aligned_cols=50 Identities=18% Similarity=-0.043 Sum_probs=35.6
Q ss_pred ceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 8 NWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+...-+.|+.... -+...+++++++ |.+++|+|++||||||+.|.++...
T Consensus 551 i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 551 LQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4455566664321 112355666666 9999999999999999999999753
No 299
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.52 E-value=0.0015 Score=61.58 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
.+..++|+|++|+||||+++.+++.++.+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999876653
No 300
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.52 E-value=0.00042 Score=67.15 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=28.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.++...++.+|+|+|++|+||||+.+.|+..+
T Consensus 48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 344567889999999999999999999999765
No 301
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.0018 Score=62.81 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.5
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+.+..|.++.|+|++||||||+++.++...
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4677899999999999999999999999876
No 302
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.48 E-value=0.0017 Score=70.22 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
....+..|+|+|+|||||||+++.|++.++..++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 456788999999999999999999999998876543
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.48 E-value=0.0026 Score=64.31 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
+.-|+|+|+||+||||+++.+++.++.+++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 34499999999999999999999999887643
No 304
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.43 E-value=0.00081 Score=62.38 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..++|+|++|+||||+++.+++.++.+++..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3488999999999999999999998776543
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.42 E-value=0.0026 Score=60.95 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL-GVKFI 67 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~i 67 (433)
..+..|+|.|++|+|||++++.+++.+ +..++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 345789999999999999999999998 66654
No 306
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.42 E-value=0.0025 Score=61.95 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
..+..|+|+|++|+||||+++.+++.++..++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 3467899999999999999999999998887643
No 307
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.40 E-value=0.0016 Score=61.96 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+.+++|+|+|||||||+.+.|. .+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999999999 65
No 308
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.39 E-value=0.002 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
.+..|+|.|++|+|||++++.++..++..++..
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 345699999999999999999999999887654
No 309
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.33 E-value=0.0021 Score=53.88 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..|+|.|++|+|||++++.++...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 344679999999999999999999865
No 310
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.33 E-value=0.00092 Score=72.74 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=31.6
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
..+++++++..+|.+++|+||+||||||+.+.++.
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 46678888999999999999999999999999875
No 311
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.32 E-value=0.0028 Score=59.87 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|++|+||||+++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999988
No 312
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.31 E-value=0.0025 Score=57.52 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHL 72 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~ 72 (433)
.+..++|+|++|+||||+++.+++.++ +.+++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 567999999999999999999998773 345665554
No 313
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.30 E-value=0.00055 Score=67.96 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=32.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
.+.++++++..| +++|+|++||||||+.+.|...++.
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445677889999 9999999999999999999987764
No 314
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.30 E-value=0.0015 Score=61.98 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+.+++|+|+|||||||+.+.|+...
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence 467899999999999999999999855
No 315
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.28 E-value=0.01 Score=56.06 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=73.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH--------------
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-------------- 98 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 98 (433)
...+..|+|+|| ||+|+.+.|.+.+. +.+.-....+.......-...+-|-. ....+...
T Consensus 102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~-s~eef~~~i~~g~flE~~~~~g 177 (295)
T 1kjw_A 102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVS-SREKMEKDIQAHKFIEAGQYNS 177 (295)
T ss_dssp CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECS-CHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecC-CHHHHHHHHHCCCcEEEEEEcC
Confidence 356778999998 79999999998763 22211111111110000011121210 11111111
Q ss_pred -----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhc-
Q psy16778 99 -----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTL- 170 (433)
Q Consensus 99 -----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~- 170 (433)
-...+...+.+|..+|++....-. ..++.... .++|||..+ .+++.+ +.+|+.. +.+..+++.-
T Consensus 178 ~~YGt~~~~V~~~~~~G~~vildid~~g~---~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t~----~~i~~rl~~a~ 249 (295)
T 1kjw_A 178 HLYGTSVQSVREVAEQGKHCILDVSANAV---RRLQAAHLHPIAIFIRPRSLENVLE-INKRITE----EQARKAFDRAT 249 (295)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEECCCTTHH---HHHHHTTCCCEEEEECCSSHHHHHH-HCTTSCH----HHHHHHHHHHH
T ss_pred cEeeeeHHHHHHHHhcCCeEEEEeCHHHH---HHHHhcccCCeEEEEECCCHHHHHH-HHhcCCH----HHHHHHHHHHH
Confidence 122355566778888888764222 22332111 478999876 666655 7766531 2222222111
Q ss_pred --cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778 171 --EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201 (433)
Q Consensus 171 --~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l 201 (433)
+..+ ....+.+|.++ +.++..+++...+
T Consensus 250 ~~e~~~--~~~fd~vivNd-~le~a~~~l~~ii 279 (295)
T 1kjw_A 250 KLEQEF--TECFSAIVEGD-SFEEIYHKVKRVI 279 (295)
T ss_dssp HHHHHH--GGGCSEEECCS-SHHHHHHHHHHHH
T ss_pred HHHHhc--cccCeEEEECc-CHHHHHHHHHHHH
Confidence 1000 01133556665 6777777766554
No 316
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.26 E-value=0.0034 Score=61.72 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
.+..|+|.|++|+|||++++.++..++..++..+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 3578999999999999999999999998876554
No 317
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.25 E-value=0.003 Score=60.63 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
...++|+|++|+||||+++.+++.++.+++..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 357999999999999999999999988776543
No 318
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.25 E-value=0.00034 Score=69.40 Aligned_cols=37 Identities=19% Similarity=0.069 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCCe--------------------EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 26 TTTLSPSGEGSPST--------------------VFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 26 ~~~~~~~~~~~~~~--------------------~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++++++++.+|. +++|+|++||||||+.+.|++.+
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 35556677777887 99999999999999999999843
No 319
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.23 E-value=0.0019 Score=61.80 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+-++++|+|++||||||+.+.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999753
No 320
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.0035 Score=64.14 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
.+..++|+|++|+||||+++.+++.+|+.++..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 3468999999999999999999999998876544
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.20 E-value=0.0042 Score=58.80 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL 72 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~ 72 (433)
.+++.. +.+|+++|++|+||||++..|+..+ .+.+++.|..
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 445555 8999999999999999999999877 3456777754
No 322
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.18 E-value=0.0032 Score=63.39 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDG 69 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~ 69 (433)
.+..++|.|+||+|||++++.+++.++ .+++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 346799999999999999999999998 666543
No 323
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.18 E-value=0.0032 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|+|++|+||||+++.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999877
No 324
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.15 E-value=0.0035 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.189 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++++++|++||||||++-.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999986666554
No 325
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.13 E-value=0.0015 Score=61.97 Aligned_cols=39 Identities=23% Similarity=0.080 Sum_probs=19.7
Q ss_pred ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
++|++.|+.. ..+.+.+ ..|+|+|++||||||+.+.|..
T Consensus 2 ~~l~~~~~~~----------~~l~~~~------~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 2 SNLPNQVHRK----------SVKKGFE------FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --------------------------C------EEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCcceECCE----------EEEcCCC------EEEEEECCCCCCHHHHHHHHhC
Confidence 4677778752 2333333 3569999999999999999875
No 326
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.13 E-value=0.0025 Score=61.98 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+.++++.++ +.+|+|++||||||+...+....
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 3455677788 99999999999999999998643
No 327
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.13 E-value=0.0033 Score=58.82 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
-+.+|.+++|+|++||||||++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999754
No 328
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.08 E-value=0.0037 Score=66.94 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
...+.-|+|.||||+|||++++.+|..+|..++..+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 355678999999999999999999999999886544
No 329
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.07 E-value=0.019 Score=58.05 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=59.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.+.+.+|+|-|.-||||+|+.+.|.+.+ |+.++....-... . .+.+ ++. .....+-..|.
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~----E--~~~~--------yl~---R~~~~lP~~G~ 102 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDE----E--LERP--------PQW---RFWRRLPPKGR 102 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHH----H--HTSC--------TTH---HHHHHCCCTTC
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh----h--ccCC--------hhh---hHHHhCCCCCe
Confidence 3577999999999999999999999988 5555544332111 0 0111 111 12223344555
Q ss_pred cEEEEcCc------------cc-HHHHHH----------HHhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778 112 TGVLVCSA------------LR-RNYRDI----------IRNNNR-VVFIYLKAEFGVILSRLQKRAEH 156 (433)
Q Consensus 112 ~~Vi~~~~------------~~-~~~~~~----------l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~ 156 (433)
.+|.+-+- .. ..+.+. |.+.+- ++++||+.|+++..+|+.+|...
T Consensus 103 IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~ 171 (500)
T 3czp_A 103 TGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKD 171 (500)
T ss_dssp EEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------
T ss_pred EEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence 55555332 11 111111 222222 68999999999999999998653
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.07 E-value=0.0061 Score=60.57 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL 72 (433)
Q Consensus 31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~ 72 (433)
++++ ++.+|+|+|++||||||++..|+..+ .+.+++.|..
T Consensus 93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred ccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 4444 78899999999999999999999877 2345666654
No 331
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.07 E-value=0.0035 Score=61.10 Aligned_cols=56 Identities=9% Similarity=-0.019 Sum_probs=39.9
Q ss_pred cccccceeeeccCCccceeeeeec---------ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 3 VSNFGNWRYWGMWPPQYVVTLIMT---------TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+++|++.|.... ..++.. ...|..+...+|..++|+|++|+||||+++.|++..
T Consensus 134 i~Fe~ltp~yP~er----~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANSR----LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCSB----CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCCc----cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45778888885422 111100 112566788999999999999999999999998854
No 332
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.06 E-value=0.0037 Score=59.70 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+..++|+|++|+||||+++.+++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 333
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.98 E-value=0.0029 Score=55.18 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCC
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGV--KFIDGD 70 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~--~~id~D 70 (433)
+|+|+|++||||||+|..|+.. |. .|+++.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 3789999999999999999976 64 355554
No 334
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.97 E-value=0.0054 Score=61.51 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEe
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKFID 68 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id 68 (433)
.+..|+|.|++|+|||++++.++..+ +..++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 44689999999999999999999998 766654
No 335
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.95 E-value=0.0031 Score=64.37 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+|.+++|+|++||||||+++.|+..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999999999866
No 336
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.0017 Score=54.31 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
.+..|+|.|++|+|||++++.++...+ +++.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~ 56 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS 56 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence 345699999999999999999998766 4443
No 337
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.92 E-value=0.0053 Score=59.50 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEe
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL------GVKFID 68 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id 68 (433)
..+..++|+|++|+||||+++.+++.+ +..++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~ 81 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY 81 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 456789999999999999999999987 665543
No 338
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.91 E-value=0.0062 Score=57.88 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
.|.-++|+|+||+||||++..|.++ |..++..|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 5788999999999999999999985 99988777654
No 339
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.90 E-value=0.0068 Score=60.80 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..++|.|++|+||||+++.+++.++..++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 57999999999999999999999988876544
No 340
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.88 E-value=0.0045 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+|.+++|+|+|||||||+.+.|+..+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 67899999999999999999998754
No 341
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.84 E-value=0.0062 Score=61.84 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..+..++|+|++|+|||++++.++..++.+++..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 45567999999999999999999999988876533
No 342
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.0074 Score=58.53 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=32.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C-CeEEeCCCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL----G-VKFIDGDHLH 73 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l----g-~~~id~D~~~ 73 (433)
=+..|.++.|.|++||||||++..++..+ + +.|++++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 35678999999999999999999999865 2 4578877654
No 343
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.81 E-value=0.0056 Score=54.78 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
+..++|+|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 348999999999999999999998753
No 344
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.0048 Score=59.93 Aligned_cols=28 Identities=25% Similarity=0.583 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
...+..++|+|++|+||||+++.+++.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999999987
No 345
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.79 E-value=0.0072 Score=60.25 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
+..+.+++|+|++||||||+...+...++
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 55688999999999999999999998664
No 346
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.78 E-value=0.0047 Score=58.74 Aligned_cols=31 Identities=32% Similarity=0.619 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
.+..++|+|++|+||||+++.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3467999999999999999999999987664
No 347
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.77 E-value=0.0064 Score=57.39 Aligned_cols=24 Identities=33% Similarity=0.700 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|+|++|+||||+++.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 348
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=95.76 E-value=0.013 Score=55.47 Aligned_cols=155 Identities=13% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCCceeeeCCCccCCceeechhhhccccCccchHHHHHH--HHhcCCceEEe-----------------------c--C
Q psy16778 237 SKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAA--VGEVGGIYILS-----------------------T--I 289 (433)
Q Consensus 237 ~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~a--a~~~g~~~~~s-----------------------~--~ 289 (433)
+++|++++++|.+++.||+++| |+.+... +. .+. +...|...+-| . .
T Consensus 3 ~~~~l~~~~~g~~l~npi~~aa-g~~~~~~---~~--~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~ 76 (311)
T 1ep3_A 3 ENNRLSVKLPGLDLKNPIIPAS-GCFGFGE---EY--AKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL 76 (311)
T ss_dssp CCTTTCEEETTEEESSSEEECT-TSSTTST---TG--GGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred CCCccceEECCEECCCCcEECC-CCCCCCH---HH--HHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCC
Confidence 5789999999999999999999 3333221 11 222 23445443211 1 1
Q ss_pred CCCCHHHHH-------Hh-CCCCcceEEEeeccCHHHHHHHHHHHHH-cCCcEEEEeeeecccCccccccccccCCCccc
Q psy16778 290 STTSIEELA-------EK-TPQTTKWFQLYIYRDREITKSLVQRAEK-AGYKALVLTVDTNVFGTRYADIRNKFNMPSHL 360 (433)
Q Consensus 290 s~~~~eeva-------~~-~~~~~~w~qly~~~d~~~~~~~~~~A~~-ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~ 360 (433)
.+.+.+++. .. .++.+...|+... +.+...+.++++++ +|+..|-+.+..|..-.+. ..+...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~-~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~----~~~g~~~~~ 151 (311)
T 1ep3_A 77 QNPGLEVIMTEKLPWLNENFPELPIIANVAGS-EEADYVAVCAKIGDAANVKAIELNISCPNVKHGG----QAFGTDPEV 151 (311)
T ss_dssp CBCCHHHHHHTHHHHHHHHCTTSCEEEEECCS-SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTT----EEGGGCHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCCCCcEEEEEcCC-CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCch----hhhcCCHHH
Confidence 233444431 12 3356788888765 34444567777777 8999999987655531110 011101111
Q ss_pred ---hHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778 361 ---NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405 (433)
Q Consensus 361 ---s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT 405 (433)
-++.+.+... -+.+..++. +-.-..+.+++++++|+++|.++
T Consensus 152 ~~eii~~v~~~~~-~pv~vk~~~--~~~~~~~~a~~l~~~G~d~i~v~ 196 (311)
T 1ep3_A 152 AAALVKACKAVSK-VPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMI 196 (311)
T ss_dssp HHHHHHHHHHHCS-SCEEEEECS--CSSCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHhcC-CCEEEEECC--ChHHHHHHHHHHHHcCCCEEEEe
Confidence 1222222222 122222221 11123567899999999999994
No 349
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.0074 Score=58.73 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999987
No 350
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.74 E-value=0.0046 Score=56.23 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34468999999999999999998864
No 351
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.74 E-value=0.0068 Score=58.75 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+.+|+|+|++||||||+...|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 447899999999999999999999865
No 352
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.73 E-value=0.0018 Score=70.42 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=29.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESL 58 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~L 58 (433)
.+.++++++..|.+++|+|++|||||||++.+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 46778899999999999999999999999984
No 353
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.71 E-value=0.008 Score=53.43 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
.++...++|.||||+||||++..|++.++-..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 344457999999999999999999998754443
No 354
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.71 E-value=0.0055 Score=52.59 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
++..|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 355
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.70 E-value=0.0011 Score=71.53 Aligned_cols=34 Identities=29% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHH-HHH
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGES-LAT 60 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~-La~ 60 (433)
.++++++++..|.+++|+|++|||||||++. |+.
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 4667788999999999999999999999996 654
No 356
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.69 E-value=0.0063 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|+|++|+||||+++.+++.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999876
No 357
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.65 E-value=0.0033 Score=68.29 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIG 55 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla 55 (433)
+++.++++++++.++|||+||||||||+
T Consensus 14 Lkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 5678899999999999999999999998
No 358
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.64 E-value=0.0068 Score=58.75 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
+..++|+|++|+||||+++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999864
No 359
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.0082 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.043 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++.+++++|++|+||||++-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999998888777
No 360
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.63 E-value=0.0067 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|++||||||+.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999985
No 361
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.63 E-value=0.0029 Score=68.19 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=25.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHH
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGE 56 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~ 56 (433)
+++++++++.+..++|||.||||||||+-
T Consensus 26 Lkni~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 26 LKDISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp CCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred CCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 45677788999999999999999999983
No 362
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.62 E-value=0.0088 Score=58.18 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++|+|++|+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 363
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.61 E-value=0.0051 Score=58.87 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFI 67 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~i 67 (433)
+..++|.|++|+|||++++.+++.++..++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 457999999999999999999999987654
No 364
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.60 E-value=0.0082 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
..+|+++++|++|||||+++..+..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHH
Confidence 4568999999999999999887643
No 365
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.57 E-value=0.0023 Score=60.91 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++..+|.+++|+|+|||||||+.+.|...+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 456678999999999999999999998654
No 366
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.56 E-value=0.0018 Score=70.29 Aligned_cols=32 Identities=34% Similarity=0.350 Sum_probs=29.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESL 58 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~L 58 (433)
.+.++++++..|.+++|+|++|||||||++.+
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 46778889999999999999999999999985
No 367
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.56 E-value=0.0092 Score=60.22 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+..++|+|+||+||||+++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999987
No 368
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.55 E-value=0.01 Score=57.67 Aligned_cols=36 Identities=36% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDH 71 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~ 71 (433)
.+..+|+|+|.+|+||||+...|+..+ .+.+++.|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 456799999999999999999999876 334566663
No 369
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.52 E-value=0.0066 Score=57.59 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH 73 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~ 73 (433)
.|.-|+|+|+||+||||++-.|.+ .|+.++.-|.+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~ 181 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE 181 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence 567899999999999999999876 499888888664
No 370
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.011 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.092 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++++++++|++||||||.+-.++.++
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4567899999999999999998888877
No 371
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.50 E-value=0.0033 Score=68.43 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=25.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHH
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGE 56 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~ 56 (433)
++++++++++++.++|||+||||||||+-
T Consensus 36 Lkni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp CCSEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred cCceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 44667788999999999999999999984
No 372
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=95.50 E-value=0.029 Score=52.20 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=61.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG 113 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (433)
.+.+|+|-|.-||||+++.+.|.+.+ |+.++....-... . ....++- .....+-..|..+
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~e----E----------~~~~ylw---R~~~~lP~~G~I~ 136 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDE----E----------KSHDFLW---RIEKQVPAAGMVG 136 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHH----H----------HTSCTTH---HHHTTCCCTTCEE
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChh----h----------hcCCHHH---HHHHhCCCCCeEE
Confidence 46799999999999999999999988 5555544332110 0 0001111 1122233445444
Q ss_pred EEEcCcc-------------cHHHHH----------HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778 114 VLVCSAL-------------RRNYRD----------IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFM 158 (433)
Q Consensus 114 Vi~~~~~-------------~~~~~~----------~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~ 158 (433)
|++.+-. ...+.. .|.+.+- ++.+||+.|.++..+|+.+|...+.
T Consensus 137 IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~ 205 (289)
T 3rhf_A 137 VFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPS 205 (289)
T ss_dssp EEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGG
T ss_pred EEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence 5543320 011111 2222222 5779999999999999999875543
No 373
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.0072 Score=58.25 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|+|++|+||||+++.+++.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999965
No 374
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.49 E-value=0.0034 Score=68.08 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=25.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHH
Q psy16778 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGE 56 (433)
Q Consensus 28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~ 56 (433)
++++++++++++.++|||+||||||||+-
T Consensus 34 Lkni~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp CCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred CCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence 44667788999999999999999999973
No 375
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.48 E-value=0.011 Score=57.15 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=32.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
-+.+|.++.|.|++||||||++..++... .+.+++++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 45688999999999999999999988654 45678877543
No 376
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.44 E-value=0.0016 Score=59.24 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+++|+|++||||||+.+.|+..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 678999999999999999999976
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.44 E-value=0.0043 Score=60.60 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
++++..| +.+|+|++||||||+...++-.+
T Consensus 18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 3556667 78899999999999999988554
No 378
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0076 Score=57.96 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q psy16778 41 FVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~l 62 (433)
++|.|++|+||||+++.+++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999986
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.42 E-value=0.0048 Score=66.62 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID 68 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id 68 (433)
....+..++|.|+||+||||+++.++..++..++.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34567789999999999999999999999776544
No 380
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=95.40 E-value=0.025 Score=53.99 Aligned_cols=145 Identities=11% Similarity=0.104 Sum_probs=81.7
Q ss_pred ccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCC---------CHHHHHHhCCCCcceEEEeeccCHHHH
Q psy16778 249 PVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTT---------SIEELAEKTPQTTKWFQLYIYRDREIT 319 (433)
Q Consensus 249 ~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~---------~~eeva~~~~~~~~w~qly~~~d~~~~ 319 (433)
+++.||++||++. +. +....+.+.+.|.-++.+-..+. .++.+ ....+.+.|+|++ ..+.+..
T Consensus 2 ~l~nri~~APM~~--~t----~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~-g~~~~~~ 73 (318)
T 1vhn_A 2 SLEVKVGLAPMAG--YT----DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIF-GSEPNEL 73 (318)
T ss_dssp ---CEEEECCCTT--TC----SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEE-CSCHHHH
T ss_pred ccCCCEEECCCCC--CC----cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeC-CCCHHHH
Confidence 4577999999874 33 24566677767765544333211 12222 1224668999999 6777777
Q ss_pred HHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch---HHHHHhhCCCcchhhhhh--ccCCHHHHHHHHHHH
Q psy16778 320 KSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEKTPQTTKWFQLY--IYRDREITKSLVQRA 394 (433)
Q Consensus 320 ~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~~~~~~~w~Qly--~~~~~~~~~~~~~ra 394 (433)
.+.+++|+++ |..|-++...|....|....-..+-.-+... ++.+.+..+ -+....+- +..+.. .++++++
T Consensus 74 ~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~G~~~~~~--~~~a~~l 149 (318)
T 1vhn_A 74 SEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRLGWEKNEV--EEIYRIL 149 (318)
T ss_dssp HHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEESCSSSCCH--HHHHHHH
T ss_pred HHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecCCCChHHH--HHHHHHH
Confidence 7888889888 9999999987765444322111110001111 222223332 12222221 111222 2889999
Q ss_pred HHcCCcEEEEe
Q psy16778 395 EKAGYKALVLT 405 (433)
Q Consensus 395 ~~~G~~aivlT 405 (433)
+++|+++|.|+
T Consensus 150 ~~~G~d~i~v~ 160 (318)
T 1vhn_A 150 VEEGVDEVFIH 160 (318)
T ss_dssp HHTTCCEEEEE
T ss_pred HHhCCCEEEEc
Confidence 99999999986
No 381
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.37 E-value=0.011 Score=58.98 Aligned_cols=38 Identities=29% Similarity=0.513 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
.++.+|+|+|++|+||||++..|+..+ .+.+++.|...
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 345799999999999999999999876 46678888653
No 382
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.34 E-value=0.13 Score=48.35 Aligned_cols=111 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE-EeCC-CCCccccccccccCCCCCCcCChhHHHH---------------
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKF-IDGD-HLHPQSNIDKMSAKQPLNDEDRRPWLNN--------------- 98 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~-id~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 98 (433)
....-|+|+|| ||+|+.+.|.+.+.-.| ...- ..+.+.... ..|..+-.-.....++.
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE--~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g 172 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYE--VDGRDYHFVSSREQMERDIQNHLFIEAGQYND 172 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCc--cCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence 45567888888 59999999998774322 2111 111111000 11222111111111211
Q ss_pred -----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778 99 -----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRA 154 (433)
Q Consensus 99 -----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~ 154 (433)
....+...+.+|..+|++.... ....++.... .++|||..| .+++.+|+..|.
T Consensus 173 n~YGT~~~~V~~~~~~gk~viLdid~q---g~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~ 232 (292)
T 3tvt_A 173 NLYGTSVASVREVAEKGKHCILDVSGN---AIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMT 232 (292)
T ss_dssp EEEEEEHHHHHHHHHHTCEEEECCCTH---HHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSC
T ss_pred ceeEEehHHHHHHHHcCCcEEEeccch---hhhhcccccccceEEEEECCCHHHHHHHHhCCC
Confidence 1234556667788899987642 2223343333 578999875 677777665553
No 383
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.33 E-value=0.009 Score=61.23 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+.+|.+++|+|++||||||+++.++...
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999865
No 384
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.32 E-value=0.011 Score=58.21 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...++..++|+|+||+||||+.+.|.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5678899999999999999999999983
No 385
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.27 E-value=0.011 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+.+.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 386
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.21 E-value=0.013 Score=49.42 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+.+|+|++||||||+...|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999987655
No 387
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.011 Score=56.50 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
...+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4577899999999999999999999988
No 388
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.20 E-value=0.01 Score=58.55 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
.-+.+|.++.|+|+|||||||++..|+-
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4467889999999999999999997763
No 389
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.19 E-value=0.018 Score=51.26 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+...|+|+|.+||||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 390
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.18 E-value=0.085 Score=56.14 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCC-CcCC-----------------hhH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLN-DEDR-----------------RPW 95 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~ 95 (433)
..+..|+|+||+ |+|+.+.|.+.+. +.+.-....+.......-...+-|- .... -.+
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 456789999993 9999999988763 3332222222111000001112221 1000 001
Q ss_pred HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhc---
Q psy16778 96 LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTL--- 170 (433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~--- 170 (433)
+-.-.+.+...+.+|+.||++... .....++.... .++|||..+ .++|.+ +..|... +.++.+++.-
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~---~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t~----~~~~~rl~~a~~~ 677 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSA---NAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE----EQARKAFDRATKL 677 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCH---HHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCCH----HHHHHHHHHHHHH
Confidence 111233355666788899998763 22233332111 478999976 555554 7777532 2222222211
Q ss_pred cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778 171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT 203 (433)
Q Consensus 171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~ 203 (433)
+..+ ....+++|.++ +.++..+++...+..
T Consensus 678 e~~~--~~~fd~vi~Nd-~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 678 EQEF--TECFSAIVEGD-SFEEIYHKVKRVIED 707 (721)
T ss_pred HHhc--cccCcEEEECc-CHHHHHHHHHHHHHh
Confidence 1111 11234556664 677777777666543
No 391
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.17 E-value=0.012 Score=56.02 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~ 69 (433)
.+..+++.|++|+||||+++.+++.++..++..
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 335678888899999999999999998766543
No 392
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.16 E-value=0.011 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999863
No 393
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.15 E-value=0.049 Score=55.09 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT 112 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
+.+.+|+|-|.-||||+|..+.|.+.+ |+.++....-... .. +.. ++ ......+-..|..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~----E~--~~~--------yl---~R~~~~lP~~G~i 360 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEE----ER--AQP--------YL---WRFWRHIPARRQF 360 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHH----HH--TSC--------TT---HHHHTTCCCTTCE
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh----hh--cch--------HH---HHHHHhCCCCCeE
Confidence 467899999999999999999999988 6666654432211 00 101 11 1122223345655
Q ss_pred EEEEcCcc------------c-HHHHHHH----------HhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778 113 GVLVCSAL------------R-RNYRDII----------RNNNR-VVFIYLKAEFGVILSRLQKRAEH 156 (433)
Q Consensus 113 ~Vi~~~~~------------~-~~~~~~l----------~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~ 156 (433)
+|.+-+.. . .++...+ .+.+- ++++||+.|+++..+|+.+|...
T Consensus 361 ~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~ 428 (500)
T 3czp_A 361 TIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKT 428 (500)
T ss_dssp EEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHS
T ss_pred EEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence 55553321 1 2222222 22222 68999999999999999998653
No 394
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.15 E-value=0.013 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999998874
No 395
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.12 E-value=0.0073 Score=57.79 Aligned_cols=30 Identities=37% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
+++..+ +.+|+|++||||||+...|.-.+|
T Consensus 20 l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EECCSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred EecCCC-cEEEECCCCCcHHHHHHHHHHHhC
Confidence 445666 999999999999999999987554
No 396
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.11 E-value=0.012 Score=54.20 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
.+..|+|+|++|+|||++++.++...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 346789999999999999999998763
No 397
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.10 E-value=0.013 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..++|.|++|+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999977
No 398
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.08 E-value=0.012 Score=57.07 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=30.5
Q ss_pred ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
++.++...+|.++. ...+.+.+++.. .|+|+|.+||||||+...|.+.
T Consensus 10 ~l~~~~~~~~~~~~-------~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 10 KIQRACTALGDHGD-------SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp HTTTTTTSCSSCCS-------SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhCcccc-------ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 35566666665321 123333334443 9999999999999999999873
No 399
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.014 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
..++|+|++|+||||+++.+++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4499999999999999999999864
No 400
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.04 E-value=0.016 Score=55.29 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
+..++|+|++|+||||+++.+++..++.+++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 379999999999999999999998886777654
No 401
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.02 E-value=0.0059 Score=66.38 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778 27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIG 55 (433)
Q Consensus 27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla 55 (433)
.++++++++..|.+++|+|++||||||+.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhH
Confidence 46788899999999999999999999997
No 402
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.01 E-value=0.033 Score=51.02 Aligned_cols=38 Identities=32% Similarity=0.570 Sum_probs=30.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH 71 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~ 71 (433)
...+..+++++|..|+||||++..|+..+ .+..+|.|.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35667899999999999999999999654 445677775
No 403
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.00 E-value=0.016 Score=62.05 Aligned_cols=35 Identities=26% Similarity=0.480 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D 70 (433)
..+.-|+|.||||+|||.+++.+|..++.+++..+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 34556899999999999999999999999998654
No 404
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=94.99 E-value=0.041 Score=54.01 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.8
Q ss_pred hhhcceeecccc-cCCCCCCceeeeCC-CccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778 222 ALKVLRIRPRVM-RDLSKRTLVTDALG-HPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE 299 (433)
Q Consensus 222 a~~~~~l~pr~l-~~~~~~d~~~~~~g-~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~ 299 (433)
-|+++-|+|.-- ...+++|++|.+-+ ..+..||+-||+++ + .+..+|.|.+++|..-++.. ..+.|++++
T Consensus 11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~--V----s~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT--V----TEHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTT--T----CSSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCC--c----CcHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 467888888532 22356899998864 57899999999873 4 34467888888999888875 567777764
No 405
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.98 E-value=0.018 Score=55.59 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.-+..|.++.|.|++||||||++..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999985
No 406
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.98 E-value=0.0078 Score=58.58 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
.+++.|.|-|+-||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5667899999999999999999999873
No 407
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.97 E-value=0.016 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999998864
No 408
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.97 E-value=0.0068 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
.++.|.|-|+-||||||+++.|++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999998773
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.94 E-value=0.012 Score=61.42 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
+....+..++|+|++||||||+++.|++.+.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3446778999999999999999999999873
No 410
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.93 E-value=0.017 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..++|.|++|+|||+++..++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999855
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.90 E-value=0.018 Score=61.73 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|+||+||||+++.|++.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999999987
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.88 E-value=0.026 Score=57.28 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~ 73 (433)
.++.+|+|+|.+||||||++..|+..+ | +.+++.|...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 456799999999999999999999765 3 4567777653
No 413
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.87 E-value=0.077 Score=46.42 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=47.4
Q ss_pred eEEEEE-cCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccc-cCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778 39 TVFVIM-GVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMS-AKQPLNDEDRRPWLNNINRIIHQLNVDNL 111 (433)
Q Consensus 39 ~~I~l~-G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
++|+++ +..|+||||++..||..+ .+.++|.|.-.....+.... .+..+-.... ..+...+..+.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~yD 77 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAAS----EKDVYGIRKDLADYD 77 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCS----HHHHHTHHHHTTTSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCc----HHHHHHHHHhcCCCC
Confidence 456665 678899999999999877 35678888542211111100 0111100111 334444555444555
Q ss_pred cEEEEcCccc-HHHHHHHHhc
Q psy16778 112 TGVLVCSALR-RNYRDIIRNN 131 (433)
Q Consensus 112 ~~Vi~~~~~~-~~~~~~l~~~ 131 (433)
.+|||+++.. ......+...
T Consensus 78 ~viiD~~~~~~~~~~~~l~~a 98 (206)
T 4dzz_A 78 FAIVDGAGSLSVITSAAVMVS 98 (206)
T ss_dssp EEEEECCSSSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 6778887633 4445555544
No 414
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.84 E-value=0.004 Score=61.78 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+++++.+.+..|+|+|++|||||||.+.|+..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 45567788899999999999999999999874
No 415
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.82 E-value=0.019 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+.+.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 416
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.82 E-value=0.015 Score=50.36 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+++|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999874
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.81 E-value=0.022 Score=47.99 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+.+...|+|+|.+|+||||+...+...
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999763
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.80 E-value=0.014 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~ 60 (433)
..|+|+|.+|+||||+.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999886
No 419
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.021 Score=49.48 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999874
No 420
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.80 E-value=0.025 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
+.++.++.|.|++||||||++..++... .+.+++++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 4678899999999999999999988754 45678886543
No 421
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.73 E-value=0.033 Score=55.52 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHLH 73 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~~ 73 (433)
.++.+|+++|++|+||||++..|+..+ .+.+++.|...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456799999999999999999999655 34578888654
No 422
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.71 E-value=0.019 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 423
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.64 E-value=0.023 Score=48.28 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
++...|+|+|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999998875
No 424
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.63 E-value=0.022 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999988763
No 425
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=94.62 E-value=0.01 Score=57.15 Aligned_cols=31 Identities=23% Similarity=0.081 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHH-HHHHHHhCC
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIG-ESLATRLGV 64 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla-~~La~~lg~ 64 (433)
...+++.|+|-|.-||||||++ +.|++.++.
T Consensus 8 ~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred ccCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 3456789999999999999999 999998753
No 426
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.61 E-value=0.013 Score=61.24 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q psy16778 41 FVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 41 I~l~G~~GsGKSTla~~La~~l 62 (433)
|+|+|++||||||+.+.|++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999853
No 427
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.59 E-value=0.025 Score=54.08 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
-+..|.++.|.|++||||||++..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45688999999999999999999998753
No 428
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.58 E-value=0.027 Score=50.30 Aligned_cols=28 Identities=29% Similarity=0.080 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+|++.+++|++||||||.+-.++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998888877
No 429
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.58 E-value=0.021 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999873
No 430
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.57 E-value=0.021 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+++|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 431
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.56 E-value=0.024 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
+..++|+|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999998864
No 432
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.54 E-value=0.026 Score=50.35 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+...|+|+|.+|+||||+...+...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999865
No 433
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.53 E-value=0.018 Score=49.91 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..+...|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 355678999999999999999988754
No 434
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.51 E-value=0.026 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|.|++|+||||+++.+++.+
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 469999999999999999999986
No 435
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.49 E-value=0.013 Score=56.30 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRLGV 64 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~lg~ 64 (433)
..++|+|++|+|||++++.+++.++.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 34999999999999999999998864
No 436
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.44 E-value=0.012 Score=59.09 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=33.3
Q ss_pred eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 20 VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+.+...+++...-+.+|..++|.|+||+||||++..++...
T Consensus 185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344445555555567899999999999999999999998754
No 437
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.42 E-value=0.028 Score=53.55 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
-+..|.++.|.|++||||||++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999999864
No 438
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.41 E-value=0.018 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.++..|+|+|.+|+|||||...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34568999999999999999999863
No 439
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.40 E-value=0.095 Score=56.04 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..+..++|+|++|+||||+++.+++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999987
No 440
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.40 E-value=0.026 Score=47.17 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998864
No 441
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.39 E-value=0.028 Score=47.92 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.+...|+|+|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999988864
No 442
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.36 E-value=0.029 Score=49.68 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.....|+|+|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998753
No 443
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.31 E-value=0.036 Score=47.98 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999874
No 444
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.30 E-value=0.025 Score=53.85 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDG 69 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~ 69 (433)
...+..++|.|+||+||||++..++... .+.|++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3456788999999999999999998754 3456666
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.27 E-value=0.026 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~ 60 (433)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999998876
No 446
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.26 E-value=0.02 Score=55.92 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH-HhCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLAT-RLGV 64 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~-~lg~ 64 (433)
.+.+|+|++||||||+...|.= .+|-
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~g~ 52 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALFGA 52 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999999999999885 3444
No 447
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.24 E-value=0.028 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999988763
No 448
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.22 E-value=0.03 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999863
No 449
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.21 E-value=0.03 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l 62 (433)
..++|+|++|+||||+++.+++.+
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 349999999999999999999986
No 450
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.17 E-value=0.029 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~ 60 (433)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35799999999999999998875
No 451
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.17 E-value=0.03 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988764
No 452
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.17 E-value=0.03 Score=59.96 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCC
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRLGVKFI--DGDHL 72 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~ 72 (433)
.++|+|++|+|||++++.+++.++..++ +...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 7999999999999999999999987654 44444
No 453
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.16 E-value=0.03 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999874
No 454
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.15 E-value=0.031 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999874
No 455
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.14 E-value=0.025 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
.+..|+|.|+||+|||++++.|+..++
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 346899999999999999999999774
No 456
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.14 E-value=0.031 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRLG 63 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~lg 63 (433)
+.+.+|+|++||||||+...|.-.++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999876653
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.14 E-value=0.031 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 458
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.13 E-value=0.032 Score=46.95 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998864
No 459
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.11 E-value=0.031 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999998754
No 460
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.10 E-value=0.024 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999988764
No 461
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.09 E-value=0.033 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999764
No 462
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.09 E-value=0.051 Score=49.11 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 34 EGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+..++++.+++|++||||||.+-.++.++
T Consensus 15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 15 SKTRGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp ---CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34678999999999999999887777766
No 463
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.06 E-value=0.031 Score=48.45 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 33468999999999999999998874
No 464
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.05 E-value=0.037 Score=54.23 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+..++|+|++||||||+++.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 465
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.04 E-value=0.032 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998863
No 466
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.04 E-value=0.017 Score=55.02 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=31.4
Q ss_pred eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 22 TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
+.+...++....-+.+|..++|.|.||+||||++..++...
T Consensus 52 ~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 52 PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444444444456889999999999999999999998754
No 467
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.03 E-value=0.032 Score=48.27 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4468999999999999999888764
No 468
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.02 E-value=0.029 Score=61.01 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
.+..++|+|++|+||||+++.+++.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999987
No 469
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.028 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+.+.|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999988863
No 470
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=93.98 E-value=0.51 Score=46.15 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=57.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 115 (433)
..+..|+|+||+| +|+.+.|.+.+.-.+..+ .... +.|..-.....+. -...+...+.+|+.||+
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~--tr~p------R~gE~dG~~Y~Fv----~~~~V~~~~~~Gk~~iL 294 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA--KSEP------RDAGTDQRSSGII----RLHTIKQIIDQDKHALL 294 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC--CCCC------CCSSSCCC--CCC----CHHHHHHHHTTTCEEEE
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccccc--cCCC------CCcccCCccCCcC----cHHHHHHHHHcCCEEEE
Confidence 4677899999998 899999888764444443 2111 1111100000111 23445666778999999
Q ss_pred EcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778 116 VCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRA 154 (433)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~ 154 (433)
+... .-...++.... .++|||..| .++|.+| .+|.
T Consensus 295 dId~---qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~ 331 (391)
T 3tsz_A 295 DVTP---NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL 331 (391)
T ss_dssp CCCH---HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred EeCH---HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence 8764 22233443222 578888886 5666654 5554
No 471
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.96 E-value=0.024 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~ 60 (433)
......|+|+|.+|+|||||.+.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34456899999999999999998753
No 472
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.96 E-value=0.03 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 473
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.96 E-value=0.034 Score=48.03 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+...|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998763
No 474
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.96 E-value=0.03 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~ 60 (433)
..|+|+|.+|+||||+.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999998753
No 475
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.95 E-value=0.033 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~ 60 (433)
..|+|+|.+|+||||+...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998864
No 476
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.91 E-value=0.036 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.+...|+|+|.+|+||||+.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999988753
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.91 E-value=0.033 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999874
No 478
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.91 E-value=0.04 Score=47.57 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34468999999999999999998864
No 479
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.90 E-value=0.036 Score=47.98 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999998764
No 480
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.034 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 40 VFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~l 62 (433)
.++|.|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999986
No 481
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.87 E-value=0.039 Score=47.59 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34468999999999999999988764
No 482
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.86 E-value=0.038 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..|+|+|.+|+||||+...|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998863
No 483
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.84 E-value=0.035 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATRL 62 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~l 62 (433)
...|+|+|.+|+||||+.+.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999887754
No 484
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.83 E-value=0.068 Score=48.19 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCC
Q psy16778 39 TVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDH 71 (433)
Q Consensus 39 ~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~ 71 (433)
.+|++.|++|+||||++-.++..+ |. .+++.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 479999999999999988888766 54 4567775
No 485
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=0.027 Score=48.15 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLA 59 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La 59 (433)
.+...|+|+|.+|+||||+...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456799999999999999998775
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.82 E-value=0.041 Score=48.02 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
..+...|+|+|.+|+||||+...|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999999999864
No 487
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.76 E-value=0.057 Score=51.03 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCC
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHL 72 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~ 72 (433)
.+..|+|+|++|+|||++++.++... + +..++...+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 45679999999999999999999854 2 334555444
No 488
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.76 E-value=0.039 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+...|...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.75 E-value=0.037 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+||||||+...|.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999764
No 490
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.047 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.+...|+|+|.+|+||||+...|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34568999999999999999999874
No 491
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.70 E-value=0.053 Score=51.09 Aligned_cols=36 Identities=36% Similarity=0.539 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCC
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDH 71 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~ 71 (433)
.++++|+++|..|+||||++-.||..+ | +..||.|.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 466789999999999999999998877 3 45788885
No 492
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.69 E-value=0.042 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999874
No 493
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.67 E-value=0.057 Score=52.51 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778 35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH 73 (433)
Q Consensus 35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~ 73 (433)
+..+.++.|.|++|+||||++..++... .+.|++++.-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 4678899999999999999999888754 45688887643
No 494
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.043 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
+...|+|+|.+|+||||+...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999877763
No 495
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.66 E-value=0.2 Score=46.89 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCeEEEEEc-CCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778 36 SPSTVFVIMG-VSGSGKSTIGESLATRL-----GVKFIDGDHL 72 (433)
Q Consensus 36 ~~~~~I~l~G-~~GsGKSTla~~La~~l-----g~~~id~D~~ 72 (433)
.++.+|+|+| .+|.||||++..||..+ .+.+||.|.-
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 3456777776 57999999999999877 4567888854
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.66 E-value=0.044 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q psy16778 40 VFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 40 ~I~l~G~~GsGKSTla~~La~~ 61 (433)
.|+|+|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 497
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.65 E-value=0.048 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 37 PSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 37 ~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
....|+|+|.+|+||||+...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999998864
No 498
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.63 E-value=0.042 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
...|+|+|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999998864
No 499
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.62 E-value=0.039 Score=46.85 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778 38 STVFVIMGVSGSGKSTIGESLAT 60 (433)
Q Consensus 38 ~~~I~l~G~~GsGKSTla~~La~ 60 (433)
...|+|+|.+|+||||+...|..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 500
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.62 E-value=0.038 Score=48.49 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778 36 SPSTVFVIMGVSGSGKSTIGESLATR 61 (433)
Q Consensus 36 ~~~~~I~l~G~~GsGKSTla~~La~~ 61 (433)
.....|+|+|.+|+||||+...+...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34468999999999999999998763
Done!