RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16778
(433 letters)
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 221 bits (566), Expect = 8e-69
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 200 MPPTRAPPNYSDFVCVDDFEQFALKVL----------------------------RIRPR 231
P+ D V D E+ A KV+ + PR
Sbjct: 3 NAPSEIKY--IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPR 60
Query: 232 VMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST 291
+ +D+ T+ LGH ++ P ++P A LAH E G A AV E G I +S S
Sbjct: 61 LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 120
Query: 292 TSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 351
+ EE++E +WFQ+Y+ +D + + ++ A+ G A++LT D+ V G R D++
Sbjct: 121 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 180
Query: 352 NKFNMPSHL-NIEELAEKTPQTTKWFQLYIYRDREIT 387
NKF P + ++ T + +Y ++I+
Sbjct: 181 NKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKIS 217
Score = 118 bits (298), Expect = 6e-30
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
EE++E +WFQ+Y+ +D + + ++ A+ G A++LT D+ V G R D++NK
Sbjct: 123 FEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNK 182
Query: 422 FNMPSHLK 429
F P +
Sbjct: 183 FVYPFGMP 190
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 219 bits (561), Expect = 3e-68
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
VC+ DF+ A K L R+RPR +RD+SK T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQ 303
G + PI +SP A +A +GE A A E Y++S+ ++ S+E++ P+
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
+WFQLY+ D + K +VQRAE G+KALV+T+DT V G R D RN+ N+ +++
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 364 ELAEKTPQTTKWFQLYIYRDREIT 387
L + ++
Sbjct: 182 ALRALKEEKPTQSVPVLFPKASFC 205
Score = 118 bits (298), Expect = 4e-30
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
+E++ P+ +WFQLY+ D + K +VQRAE G+KALV+T+DT V G R D RN+
Sbjct: 112 LEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQ 171
Query: 422 FNMPSHL 428
N+ +++
Sbjct: 172 LNLEANI 178
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 216 bits (552), Expect = 2e-66
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 28/202 (13%)
Query: 201 PPTRAPPNYSDFVCVDDFEQFALKVL----------------------------RIRPRV 232
+C++D+EQ A VL ++ PR+
Sbjct: 16 ENLYFQSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRM 75
Query: 233 MRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTT 292
+R++++ L T LG V +PI V AMQ++AH +GE+ A +G +LS+ +T+
Sbjct: 76 LRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATS 135
Query: 293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 352
SIEE+AE P+ +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN
Sbjct: 136 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 195
Query: 353 KFNMPSHLNIEELAEKTPQTTK 374
+F +P L ++ T +
Sbjct: 196 RFKLPPQLRMKNFETSTLSFSP 217
Score = 120 bits (303), Expect = 2e-30
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
IEE+AE P+ +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT G R D+RN+
Sbjct: 137 IEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNR 196
Query: 422 FNMPSHLK 429
F +P L+
Sbjct: 197 FKLPPQLR 204
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 212 bits (541), Expect = 4e-65
Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 32/211 (15%)
Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
+ V+++E A + L RPR++ D++ +
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
T LG + +PI ++P AMQK+AH EGE A A G I LS+ +T+S+EE+A P
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL-- 360
++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT G R ADI+N+F +P L
Sbjct: 123 G-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTL 181
Query: 361 -NIEELAEKTPQTTKWFQLYIYRDREITKSL 390
N E + L Y +I +SL
Sbjct: 182 KNFEGIDLGKMDKANDSGLSSYVAGQIDRSL 212
Score = 116 bits (293), Expect = 3e-29
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
+EE+A P ++FQLY+Y+DR + LV+RAE+AG+KA+ LTVDT G R ADI+N+
Sbjct: 114 VEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172
Query: 422 FNMPSHLK 429
F +P L
Sbjct: 173 FVLPPFLT 180
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 200 bits (512), Expect = 1e-60
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 33/211 (15%)
Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
+ V+D+ + A K L R +P+ + D+S+R+L
Sbjct: 4 NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63
Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
+ LG +P+ + P + +G++ A A + G ++LST S SIE+LA +
Sbjct: 64 AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123
Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL-- 360
WFQLY+ REI + +V +A GY LVLT D V G R D+ N+F +P L
Sbjct: 124 -GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTL 181
Query: 361 -NIEELAEKTPQTTKWFQLYIYRDREITKSL 390
N E + R++ S
Sbjct: 182 KNFEGIDLGKMDKANLEMQAALMSRQMDASF 212
Score = 108 bits (272), Expect = 3e-26
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
IE+LA + WFQLY+ REI + +V +A GY LVLT D V G R D+ N+
Sbjct: 115 IEDLARQCD-GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNR 172
Query: 422 FNMPSHLK 429
F +P L
Sbjct: 173 FKIPPFLT 180
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 202 bits (517), Expect = 5e-60
Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 159 PADLLE---SQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCV 215
++++ + + L + P++ P E + P + + +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPELVCPP-YAPGETKEDIARKEQLKSLLPPLDNIINL 125
Query: 216 DDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVTDALG 247
DFE A + L +P+++ D+ K + TD LG
Sbjct: 126 YDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLG 185
Query: 248 HPVQIPIGVSPAAMQKLAH---EEGEIGNAAAVGEVGGIYILSTISTTSIEELAE--KTP 302
V +P VS A+ KL + E ++ G ++ST+++ S EE+ E +
Sbjct: 186 SHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSD 245
Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMP 357
+ +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++ KF+
Sbjct: 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNT 300
Score = 108 bits (271), Expect = 1e-25
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 362 IEELAE--KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 419
EE+ E + + +W+QLY+ DR+IT LV+ EK G KAL +TVD G R D++
Sbjct: 235 PEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMK 294
Query: 420 NKFNMP 425
KF+
Sbjct: 295 LKFSNT 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 189 bits (480), Expect = 1e-58
Identities = 77/171 (45%), Positives = 112/171 (65%), Gaps = 8/171 (4%)
Query: 25 MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK 84
M+TT ++V+MGVSGSGKS + +A +L F+DGD LHP+ NI+KM++
Sbjct: 1 MSTT------NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG 54
Query: 85 QPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEF 143
+PLND+DR+PWL +N + N ++VCSAL+++YRD++R N + FIYLK +F
Sbjct: 55 EPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDF 114
Query: 144 GVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
VI SRL+ R HF +L +QF+TL+EP E DV V +++PLEG+V
Sbjct: 115 DVIESRLKARKGHFFKTQMLVTQFETLQEPGAD-ETDVLVVDIDQPLEGVV 164
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 188 bits (479), Expect = 3e-58
Identities = 70/176 (39%), Positives = 96/176 (54%), Gaps = 12/176 (6%)
Query: 25 MTTTLSPSGEGSPS----TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK 80
M ++ E + V+MGVSGSGKS++GE++A G FI+GD LHP NI K
Sbjct: 1 MVMSIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRK 60
Query: 81 MSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIR--NNNRVVFIY 138
MS PL D+DR PWL I + V+ CSAL+R+YRD +R + F++
Sbjct: 61 MSEGIPLTDDDRWPWLAAIGERLAS----REPVVVSCSALKRSYRDKLRESAPGGLAFVF 116
Query: 139 LKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
L V+ R+ R HFMP+ LL++Q +TLE+P E V V +PL IV
Sbjct: 117 LHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRG--EVRTVAVDVAQPLAEIV 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 187 bits (475), Expect = 1e-57
Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
G P+ V+MGVSGSGK+TI +A G++F + D H NI M PL DEDR P
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85
Query: 95 WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKR 153
WL ++ + ++ ++ CSAL+R YRD++R V F++L VI R+ KR
Sbjct: 86 WLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKR 145
Query: 154 AEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
HFMPA LL+SQ TLE +P + + + +P E ++
Sbjct: 146 EGHFMPASLLQSQLATLEALEP--DESGIVLDLRQPPEQLI 184
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 183 bits (467), Expect = 1e-56
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 14/165 (8%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHP-QSNIDKMSA-KQPLNDEDRRPWL 96
T+ ++ G KST+ L+ L I G +S +K+ L DED
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIID 61
Query: 97 NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIR--NNNRVVFIYLKAEFGVILSRLQKRA 154
R ++ V S L I + +YL A+ VI RL+ R
Sbjct: 62 ----RFVYSNLVYA-KKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116
Query: 155 EHFMPADLLESQFQTLEEPDPLVEPDVRTVSV---NEPLEGIVSK 196
+ ++ ++S + E + T S + I
Sbjct: 117 DEYIEGKDIDSILELYREVMS--NAGLHTYSWDTGQWSSDEIAKD 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 95.8 bits (238), Expect = 2e-23
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 13/182 (7%)
Query: 38 STVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
S + I G G GK+ +L RL F+ + + + + K++ + ++ W+
Sbjct: 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG--QALRKLTPGFSGDPQEHPMWI 62
Query: 97 NNINRIIHQLNVDNLTGVLV--CSALRRNYRDIIRNNNR-----VVFIYLKAEFGVILSR 149
+ + G L+ S + + + V L A V+L R
Sbjct: 63 PLMLDALQYA-SREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121
Query: 150 LQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK--SAIMPPTRAPP 207
L++ + + +E + L D + + E I ++ + PP +
Sbjct: 122 LRRDGQPQVNVGTVEDRLNELRGEQFQTHIDTAGLGTQQVAEQIAAQVGLTLAPPPQGAL 181
Query: 208 NY 209
++
Sbjct: 182 HW 183
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 87.9 bits (218), Expect = 2e-19
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 23/138 (16%)
Query: 227 RIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIY 284
+ + DL++ L T G P ++ +E A G ++
Sbjct: 60 ELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLF 119
Query: 285 ILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG 344
+ + ++ + T V+++ A + +D
Sbjct: 120 VTGS--------------------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQA 159
Query: 345 TRYA-DIRNKFNMPSHLN 361
A + H+N
Sbjct: 160 GLQAVRDLQPLFLQVHIN 177
Score = 45.9 bits (109), Expect = 1e-05
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 377 QLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA-DIRNKFNMPSHLKEDQD 433
++ + T V+++ A + +D A + H+ Q+
Sbjct: 124 YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQE 181
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 78.4 bits (193), Expect = 4e-17
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 26/181 (14%)
Query: 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW 95
+ ++ G +GK+T+ ++LAT L + + D + M +D +
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK-----EVMFDGLGWSDREWSRR 57
Query: 96 LN-----NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRN-----NNRVVFIYLKAEFGV 145
+ + + + ++ + + ++N + I A V
Sbjct: 58 VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117
Query: 146 ILSRLQKRAEHF----------MPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS 195
++ R+ R PADL + + P PL P + TV P + ++
Sbjct: 118 LVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGP-LLTVDTTFPEQIDMN 176
Query: 196 K 196
Sbjct: 177 A 177
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 72.8 bits (178), Expect = 4e-15
Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 11/187 (5%)
Query: 33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKF--IDGDHLHPQSNIDKMSAKQPLNDE 90
+ + ++ G GSGKSTI E+LA GV D L ++ P + +
Sbjct: 4 TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ 63
Query: 91 DRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSR 149
R + + V++ +R ++ R + +I L+ + R
Sbjct: 64 QNRMIMQIAADVA-GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122
Query: 150 LQKRAEHFM----PADLLESQFQTLEEPDPLV-EPDVRTV--SVNEPLEGIVSKSAIMPP 202
R + L SQF L + V + ++ + + S +
Sbjct: 123 CLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRIDA 182
Query: 203 TRAPPNY 209
+ ++
Sbjct: 183 SLEHHHH 189
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 61.9 bits (150), Expect = 2e-11
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 15/154 (9%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
+++I G +G GKST + LA +L +I+GD ++ + E
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN-----HMVVGGYRPPWESDELLALT 58
Query: 99 INRIIHQLNVDNLTG--VLVCSALR----RNYRDIIR---NNNRVVFIYLKAEFGVILSR 149
I L V++ ++ ++ + FI L +L R
Sbjct: 59 WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118
Query: 150 LQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRT 183
R + + + E T
Sbjct: 119 DALRKKDEQMGERCLELVEEFESKGIDERYFYNT 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 60.4 bits (146), Expect = 5e-11
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 11/121 (9%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-DKMSAKQPLNDEDRRPWLNNIN 100
++ G G GK+T+G+ LA++ G+K+I+ L + + D + D ++ ++
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELD 74
Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA 160
+ + V + C + I+ L+ + V+ RL+ R +
Sbjct: 75 NQMREGGV--IVDYHGCDFFPERWFHIV--------FVLRTDTNVLYERLETRGYNEKKL 124
Query: 161 D 161
Sbjct: 125 T 125
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 61.8 bits (150), Expect = 5e-11
Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
+ ++ G+ G GKST ++LA L ID L D + P+ E ++
Sbjct: 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL----GSDLIRESFPVWKEKYEEFIKK 60
Query: 99 INRIIHQLNVDNLTGVL----VCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKR 153
+ + N ++ +++RR+ +I + N IYLKA V++ R +R
Sbjct: 61 STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 120
Query: 154 AEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNE----PLEGIVSKSAIMPPTRAPPNY 209
E +P ++++ ++ +EP + D + ++ I ++ ++ P +
Sbjct: 121 GEK-IPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIA--KKLIEKSKEIPKF 177
Query: 210 S 210
Sbjct: 178 Y 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 6e-11
Identities = 72/465 (15%), Positives = 134/465 (28%), Gaps = 127/465 (27%)
Query: 36 SPSTVFVIMGVSGSGKST-IGESLATR--------------LGVKFIDGDHLHPQSN--- 77
P+ +I GV GSGK+ + + L L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 78 -IDKM-------SAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL--VCSALRRNYRDI 127
ID S+ L + L + + + + L VL V +A N ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLL-VLLNVQNAKAWNAFNL 264
Query: 128 -----IRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLE--SQFQTLEEPD-PLVEP 179
+ + V +L A +S L + P ++ ++ D P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLP---R 320
Query: 180 DVRTVSVNEPLE-GIVSKSAIMPPTRAPPNYSDFVCVDDFEQF---ALKVLRIRPRVMRD 235
+V T + P I+++S + V D +L VL P R
Sbjct: 321 EVLTTN---PRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLE--PAEYRK 373
Query: 236 LSKRTLV--TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTS 293
+ R V IP + + + + +++ + S
Sbjct: 374 MFDRLSVFPPS-----AHIPTILLSLIWFDVIKSDVMV-------------VVNKLHKYS 415
Query: 294 IEELAEKTPQTTKWFQLY-IYRD--------REITKSLVQRAEKAGYKALVLTVDTNVFG 344
L EK P+ + + IY + + +S+V Y + T D++
Sbjct: 416 ---LVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDH-----YN-IPKTFDSDDLI 465
Query: 345 TRYADIRNKF--NMPSHLNIEELAEKTPQTTKWF-------------------------- 376
Y D F ++ HL E E+ F
Sbjct: 466 PPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 377 --QLYIYRDREITKSLVQRAEKAG-YKALVLTVDTNVFGTRYADI 418
QL Y+ I + + + ++ N+ ++Y D+
Sbjct: 524 LQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Score = 55.6 bits (133), Expect = 2e-08
Identities = 57/406 (14%), Positives = 110/406 (27%), Gaps = 126/406 (31%)
Query: 65 KFIDGDHLHPQSNID------KMSAKQPLNDEDR----RPWLNNINRIIHQLNV------ 108
KF++ + N K +QP R L N N++ + NV
Sbjct: 81 KFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 109 -------------DNLT--G-------VLVCSALRRNYRDIIRNNNRVVFIYLKAEF--G 144
N+ G + +Y+ + + ++ ++ LK
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 145 VILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTR 204
+L LQK P D +R S+ L ++
Sbjct: 197 TVLEMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHSIQAELRRLLKS-------- 240
Query: 205 APPNYSDFVCVDDFEQFALKVLR-IR-PRVMR--DLSKRTLVT-------DALGHPVQIP 253
Y + L VL ++ + +LS + L+T D L
Sbjct: 241 --KPYEN----------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 254 IGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYI- 312
I + +M L +E + +L ++L + +
Sbjct: 289 ISLDHHSM-TLTPDEVK-------------SLLLKYLDCRPQDLP---REVLTTNPRRLS 331
Query: 313 -----YRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNM----PSHLNIE 363
RD T + L +++++ A+ R F+ P +I
Sbjct: 332 IIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI- 387
Query: 364 ELAEKTPQTTK--WFQLYIYRDREIT-----KSLVQRAEKAGYKAL 402
WF + + SLV++ K ++
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 34.1 bits (77), Expect = 0.11
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 27/123 (21%)
Query: 284 YILSTISTTSIEE-LAEKTPQTTKWFQLYIYRDR--EITKSLVQRAEKAGYKALVLTVDT 340
S +S I+ + K + + + E+ + V+ + YK L
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------ 94
Query: 341 NVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRD-REITKSLVQRAEKAGY 399
+ I+ + PS + + ++ +Y D + K V R + Y
Sbjct: 95 ------MSPIKTEQRQPSMMTRMYIEQRDR---------LYNDNQVFAKYNVSRLQP--Y 137
Query: 400 KAL 402
L
Sbjct: 138 LKL 140
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 58.3 bits (141), Expect = 3e-10
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 38 STVFVIMGVSGSGKST-IGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
+ + +G GSGKST E +A G I+ D + + +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 97 NNINRIIHQLNVDNLTGVLV-------CSALRRNYRDIIRNNN-RVVFIYLKAEFGVILS 148
+ + V R + + +V + ++
Sbjct: 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK 121
Query: 149 RLQKRAEHFMPADLLESQFQTLEEP--DPLVEPD 180
R KR +P D+L S ++++ E P+
Sbjct: 122 RNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGT 155
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 59.8 bits (145), Expect = 4e-10
Identities = 21/190 (11%), Positives = 49/190 (25%), Gaps = 20/190 (10%)
Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSP-AAMQKLAHEEGEIGNAAAVGEVGG 282
+ + L + + T PI ++ E A A + G
Sbjct: 28 ITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGI 87
Query: 283 IYILSTISTTSIEELAEKT--------PQTTKWFQLYIYRDREITKSLVQRAEKAGYKAL 334
+ + + + + P + L K + E G AL
Sbjct: 88 PLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANAL 144
Query: 335 VLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRA 394
+ ++ R+ IE++ + ++ + +
Sbjct: 145 QIHLNVIQEIVMPEGDRSFSGALKR--IEQICSRVSVPVIVKEVGFGMSKAS----AGKL 198
Query: 395 EKAGYKALVL 404
+AG A+ +
Sbjct: 199 YEAGAAAVDI 208
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 5e-10
Identities = 68/408 (16%), Positives = 122/408 (29%), Gaps = 136/408 (33%)
Query: 52 STIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL--NNINRIIHQLNVD 109
+T E + LG ++ + P E +L N+I+ + +L +
Sbjct: 55 TTPAELVGKFLG--YVS-SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 110 NLTGVLVCSALRRNY--------RDIIRNNNRVVF---------IYLKAEFG------VI 146
N T ++ L +NY R + +N +F + A FG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV--AIFGGQGNTDDY 169
Query: 147 LSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPL--EGIVSKSAIMPP 202
L+ + + DL++ +TL E +RT E + +G+ + P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSEL-------IRTTLDAEKVFTQGLNILEWLENP 222
Query: 203 TRAPP-NYSD-------FVCVDDFEQF--ALKVLRIRPRVMRDLSKRTLVTDALGHPVQI 252
+ P +Y + V + K+L P +R K A GH +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-----GATGHSQGL 277
Query: 253 PIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKW-FQLY 311
V+ A+ A S E + F +
Sbjct: 278 ---VTAVAI------------AET---------------DSWESFFVSVRKAITVLF--F 305
Query: 312 I-------YRDREITKSLVQRAEKAGYKA----LVLTVDTNVFGTRYADIR---NKFNMP 357
I Y + + S+++ + + L + ++ NK N
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISNLTQEQVQDYVNKTN-- 357
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT 405
SHL + Q+ I SLV G K LV++
Sbjct: 358 SHLPAGK------------QVEI--------SLVN-----GAKNLVVS 380
Score = 54.7 bits (131), Expect = 5e-08
Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 82/238 (34%)
Query: 119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA-EHFMPADLLES-QF-QTLEEPDP 175
+R NY +I + + F I LL + QF Q P
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQ------P 1734
Query: 176 ---LVEPDVRTVSVNEPL--EGIVSKSAIMPPTRAPPN------YSDFVC---VDDFEQF 221
L+E + E L +G++ A A Y+ V E
Sbjct: 1735 ALTLME-----KAAFEDLKSKGLIPADATF----A---GHSLGEYAALASLADVMSIES- 1781
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGH---------PVQIPIGVSPAAMQ----KLAHEE 268
++V+ R M+ R D LG P ++ S A+Q ++
Sbjct: 1782 LVEVVFYRGMTMQVAVPR----DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 269 G---EIGN--------AAAVGEVGGIYILSTI---------------STTSIEELAEK 300
G EI N AA G++ + ++ + + S+EE+
Sbjct: 1838 GWLVEIVNYNVENQQYVAA-GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 48.5 bits (115), Expect = 3e-06
Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 62/205 (30%)
Query: 26 TTTLSPS--------GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN 77
T+L PS EG PS M L + + + + Q
Sbjct: 316 NTSLPPSILEDSLENNEGVPSP----M-----------------LSISNLTQEQV--QDY 352
Query: 78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG-----VLVCSALRRNYRDIIRNNN 132
++K ++ P ++ ++ +N + V ++G + LR+ + +
Sbjct: 353 VNKTNSHLP---AGKQVEISLVNG--AKNLV--VSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 133 RVVF----IYLKAEFGVIL----SRLQKRAEHFMPADLLESQFQTLEEPDPLVEP----- 179
R+ F + F + S L A + DL+++ + P
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF--NAKDIQIPVYDTF 463
Query: 180 ---DVRTVSVNEPLEGIVSKSAIMP 201
D+R +S E IV +P
Sbjct: 464 DGSDLRVLS-GSISERIVDCIIRLP 487
Score = 41.6 bits (97), Expect = 6e-04
Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 53/223 (23%)
Query: 154 AEHFMPADLLESQFQ-TLEEPDPLVEPDVRTVSVNEPLEGIVSK-----SAIMPPTRAPP 207
F A L+ QF L EP D + E +V K S+++ P++
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE----LVGKFLGYVSSLVEPSKVGQ 79
Query: 208 NYSDFV--CVDDFEQFALK-------VLRIRPRVMRDLSKRTLV-------TDALGHPVQ 251
+ + C+ +FE L+ ++ L K + P
Sbjct: 80 -FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 252 IPIGVSPAAMQKLAHEEGEIGNAAAVGEVG-GIYILSTISTTSIEELAEKTPQTTKWFQL 310
S +A+ + A EG A G G G + EEL + L
Sbjct: 139 KK---SNSALFR-AVGEGNAQLVAIFG--GQG------NTDDYFEELRD----------L 176
Query: 311 Y-IYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 352
Y Y + L++ + + + + T+D T+ +I
Sbjct: 177 YQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Score = 28.9 bits (64), Expect = 4.5
Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 25/76 (32%)
Query: 15 WPPQYVVTLIMTTTLSPS-----GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG 69
W TT + G G G SG G T GV+ I
Sbjct: 490 WE--------TTTQFKATHILDFGPG---------GASGLGVLT--HRNKDGTGVRVIVA 530
Query: 70 DHLHPQSNIDKMSAKQ 85
L + D KQ
Sbjct: 531 GTLDINPD-DDYGFKQ 545
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 51.9 bits (125), Expect = 6e-08
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
+ G G+GK+T+G++ A +L V FID D I++ + + + E R
Sbjct: 29 FLTGYMGAGKTTLGKAFARKLNVPFIDLDWY-----IEER-FHKTVGELFTERGEAGFRE 82
Query: 94 PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
N ++ + NV V+ + + + + + ++L V+ RL
Sbjct: 83 LERNMLHEVAEFENV-----VISTGGGAPCFYDNMEFMNRTGKT--VFLNVHPDVLFRRL 135
Query: 151 QKRAE------HFMPADLLESQFQTLEEPDPL 176
+ + +L++ Q LE+ P
Sbjct: 136 RIAKQQRPILQGKEDDELMDFIIQALEKRAPF 167
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 50.3 bits (121), Expect = 1e-07
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 24/123 (19%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
++G+ G+GK+++G LA D D I+K + E RR
Sbjct: 9 YLIGLMGAGKTSVGSQLAKLTKRILYDSDKE-----IEKR-TGADIAWIFEMEGEAGFRR 62
Query: 94 PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
I + N+ +L L R I V IYL A L R+
Sbjct: 63 REREMIEALCKLDNI-----ILATGGGVVLDEKNRQQISETGVV--IYLTASIDTQLKRI 115
Query: 151 QKR 153
++
Sbjct: 116 GQK 118
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 49.8 bits (120), Expect = 2e-07
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 24/123 (19%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
++G SGKST+G L+ L + F D D + K + E R+
Sbjct: 4 YLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE-----VQKR-EGLSIPQIFEKKGEAYFRK 57
Query: 94 PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
+ + + NV V+ + +++ +++ F V L R
Sbjct: 58 LEFEVLKDLSEKENV-----VISTGGGLGANEEALNFMKSRGTT--VFIDIPFEVFLERC 110
Query: 151 QKR 153
+
Sbjct: 111 KDS 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 49.5 bits (119), Expect = 2e-07
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
++G G+GKSTIG LA +L ++F D D I+K + E+ R
Sbjct: 8 FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE-----IEKR-TGADVGWVFDLEGEEGFRD 61
Query: 94 PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
IN + + + VL S R R+ + VV YL+ L+R
Sbjct: 62 REEKVINELTEKQGI-----VLATGGGSVKSRETRNRLSARGVVV--YLETTIEKQLART 114
Query: 151 QKR 153
Q+
Sbjct: 115 QRD 117
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 49.1 bits (118), Expect = 3e-07
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 36/135 (26%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------- 89
+F++ G G G +T+G LA LG +F+D D + ++ + D
Sbjct: 2 TEPIFMV-GARGCGMTTVGRELARALGYEFVDTDIF-----MQH-TSGMTVADVVAAEGW 54
Query: 90 ------EDRRPWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLK 140
E + + + N V+ L R +R + VV YL
Sbjct: 55 PGFRRRE---------SEALQAVATPN--RVVATGGGMVLLEQNRQFMRAHGTVV--YLF 101
Query: 141 AEFGVILSRLQKRAE 155
A + RLQ +
Sbjct: 102 APAEELALRLQASLQ 116
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 49.1 bits (118), Expect = 3e-07
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
V++G GSGKS++ + L L ++ +D D + I + + + ED R
Sbjct: 11 VLIGFMGSGKSSLAQELGLALKLEVLDTDMI-----ISER-VGLSVREIFEELGEDNFR- 63
Query: 95 WLNNI-NRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
+I +L V+ + N ++ YLK +F ++ RL
Sbjct: 64 ---MFEKNLIDELKTLKTPHVISTGGGIVMHEN----LKGLGTT--FYLKMDFETLIKRL 114
Query: 151 QKR 153
++
Sbjct: 115 NQK 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 48.4 bits (116), Expect = 6e-07
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
V++G+ GSGKSTIG LA LGV +D D
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 36
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 49.7 bits (118), Expect = 6e-07
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 25/154 (16%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN- 97
+ + +G GSGKST A K ++ N D ++E
Sbjct: 3 KIILTIGCPGSGKST----WAREFIAKNPGFYNI----NRDDYRQSIMAHEERDEYKYTK 54
Query: 98 NINRIIHQLNVDNLTGVL---------------VCSALRRNYRDIIRNNN-RVVFIYLKA 141
I+ + D +L + R + + +V
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV 114
Query: 142 EFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP 175
+ ++ R KR +P D+L S ++++ E
Sbjct: 115 PWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 48.6 bits (115), Expect = 7e-07
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 42 VIMGVSGSGKSTIGESLATRL-GVKFIDGDHL----HPQSNIDKMSAKQPLNDEDRRPWL 96
+I G G+GK+++ E +A L G + ++ L H + D + ++D L
Sbjct: 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 73
Query: 97 NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153
+ + I+ +V + ++ + + L V+ RL KR
Sbjct: 74 DFMEPIMVSRG-----NHVVDY----HSSELFPERWFHMVVVLHTSTEVLFERLTKR 121
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 48.2 bits (115), Expect = 1e-06
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
++G+ GSGK+T+G+ +A LG F D D L I++ + + E R
Sbjct: 52 YLVGMMGSGKTTVGKIMARSLGYTFFDCDTL-----IEQAMKGTSVAEIFEHFGESVFR- 105
Query: 95 WLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ 151
+ +L++ V+ + +R + + I+L + R+
Sbjct: 106 --EKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKG---ISIWLDVPLEALAHRIA 160
Query: 152 KR 153
Sbjct: 161 AV 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 47.2 bits (113), Expect = 2e-06
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 36/126 (28%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
V +G GSGKST+ +LA L + F+D D L I++ Q +++ E+ R
Sbjct: 8 VFIGFMGSGKSTLARALAKDLDLVFLDSDFL-----IEQK-FNQKVSEIFEQKRENFFR- 60
Query: 95 WLNNI-NRIIHQL-NVDNL---TG---VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVI 146
++ + + TG V + IYLKA+F +
Sbjct: 61 ---EQEQKMADFFSSCEKACIATGGGFVN---------VSNLEKAGFC--IYLKADFEYL 106
Query: 147 LSRLQK 152
RL K
Sbjct: 107 KKRLDK 112
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 47.9 bits (114), Expect = 4e-06
Identities = 19/212 (8%), Positives = 53/212 (25%), Gaps = 34/212 (16%)
Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSP-AAMQKLAHEEGEIGN---AAAVGE 279
+ + + S+ T + +P+ V+ E N A +
Sbjct: 32 VILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGG----RNELGRINKIIAEVAEK 87
Query: 280 VGGIYILSTISTTSIEELAEKTPQTTK--WFQLYIYRDREITKSLVQRAEKAGYKALVLT 337
G + + + A ++ + + I + + Q + G K
Sbjct: 88 FGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGM----PQLVKGYGLKEFQDA 143
Query: 338 VDTNVFGTRYADIRNK-----------FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREI 386
+ + + + + + +++++ + E
Sbjct: 144 IQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMET 203
Query: 387 TKSLVQRAEKAGYKALVLTVDTNVFGTRYADI 418
+ G K + GT + I
Sbjct: 204 ----AKLLYSYGIKNFDT---SGQGGTNWIAI 228
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 42.4 bits (99), Expect = 8e-05
Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 17/154 (11%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI-----DGDHLHPQSNIDKMSAKQPLND-- 89
+ + ++ G S +GKS I L + L ++ P + D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 90 EDRRPWLNNINRIIHQLNVDNL--------TGVLVCSALRRNYRDIIRNNNRVVFIYLKA 141
P + + V V + A + + V+++ ++
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121
Query: 142 EFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP 175
+ V R R + A + Q + E
Sbjct: 122 DGAVAEGRETARGDR--VAGMAAKQAYVVHEGVE 153
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 42.0 bits (98), Expect = 2e-04
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
+ I GSG +G+ LA LG+ F D D L S + + +++ NN
Sbjct: 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAG--NN 72
Query: 99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
+ + +L + + ++ + + V+ ++E + + R
Sbjct: 73 LLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRA 124
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 40.7 bits (95), Expect = 6e-04
Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 16/177 (9%)
Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGI 283
R+R + + LS+ L T LG ++ P + + E + A A +G
Sbjct: 31 FRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-- 88
Query: 284 YILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
+ + + I + P+ + F++ R++ + A + D
Sbjct: 89 -VGMMLGSGRI---LLERPEALRSFRV-----RKVAPKALLIANLGLAQLRRYGRDD--- 136
Query: 344 GTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYK 400
R ++ + H+N + A + T + + V E
Sbjct: 137 LLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGL 193
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 39.3 bits (91), Expect = 0.001
Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 28/137 (20%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH--------------------PQSNI 78
+ I GSG + + LA + + L
Sbjct: 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAF 66
Query: 79 DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV--CSALRRNYRDIIRNNNRVVF 136
+ A ++ + N I + N + + V+V C+ I+ +N ++
Sbjct: 67 IPVPAGGTTISLEQDIAIRQFNFIRKKANEEKESFVIVGRCAEE------ILSDNPNMIS 120
Query: 137 IYLKAEFGVILSRLQKR 153
++ + R+ +R
Sbjct: 121 AFILGDKDTKTKRVMER 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 38.3 bits (90), Expect = 0.002
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 37/113 (32%)
Query: 45 GVSGSGKSTIGESLATRL---GVK--FIDGDHLHPQSNIDKMSAKQPLN------DEDRR 93
G+ GSGK+TI LA L G + +DGD + ++ E+R
Sbjct: 20 GLPGSGKTTIATRLADLLQKEGYRVEVLDGD------WA-----RTTVSEGAGFTREERL 68
Query: 94 PWLNNINRIIH--QLNVDNLTGVLVCSAL-------RRNYRDIIRNNNRVVFI 137
++ RI +L N GV+V + R R I+ + F+
Sbjct: 69 ---RHLKRIAWIARLLARN--GVIVICSFVSPYKQARNMVRRIVEEEG-IPFL 115
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 37.5 bits (88), Expect = 0.003
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 39/116 (33%)
Query: 45 GVSGSGKSTIGESLATRL---GVK--FIDGDHLHPQSNIDKMSAKQPLN------DEDRR 93
G+SG+GK+T+ +L L G+ +DGD NI +Q LN EDR
Sbjct: 12 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGD------NI-----RQGLNKNLGFSPEDRE 60
Query: 94 PWLNNINRIIH--QLNVDNLTGVLVCSAL-------RRNYRDIIRNNNRV---VFI 137
N+ RI +L D G++ ++ R N R I + VF+
Sbjct: 61 ---ENVRRIAEVAKLFADA--GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFV 111
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 37.6 bits (86), Expect = 0.005
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 12/163 (7%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHL---HPQSNIDKMSAKQPLNDEDRR 93
++ G SG+GK+TI + IDGD HP + + E +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYL-ELQQEYGKDSVEYTK 91
Query: 94 PWLNNINRIIHQLNVDNLTGVLVCSALRR------NYRDIIRNNNRVVFIYLKAEFGVIL 147
+ + + +L+ LR + + V + + +
Sbjct: 92 DFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSY 151
Query: 148 SRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPL 190
R E + +++ E D +V V E L
Sbjct: 152 LSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEEL 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 36.4 bits (85), Expect = 0.009
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 37/114 (32%)
Query: 45 GVSGSGKSTIGESLATRL---GVK--FIDGDHLHPQSNIDKMSAKQPLN------DEDRR 93
G+SGSGKST+ +L L G +DGD N+ + LN EDR
Sbjct: 32 GLSGSGKSTLACALNQMLYQKGKLCYILDGD------NV-----RHGLNRDLSFKAEDRA 80
Query: 94 PWLNNINRIIH--QLNVDNLTGVLVCSAL-------RRNYRDIIRNNNRV-VFI 137
NI R+ +L D G++ ++L R R ++ + V VF+
Sbjct: 81 ---ENIRRVGEVAKLFADA--GIICIASLISPYRTDRDACRSLLPEGDFVEVFM 129
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 36.2 bits (83), Expect = 0.016
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
+++G GSGKSTI E L + K+ HP + I+ +P+ + N+
Sbjct: 28 ILVGSPGSGKSTIAEELCQIINEKYHTFLSEHP-NVIEVNDRLKPMVNLVDSLKTLQPNK 86
Query: 102 IIHQLNVDNLTGVLV--CSALRRNYRDIIRNNNRVVFI 137
+ + L V + Y + NN +
Sbjct: 87 VAEMIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAV 124
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 35.5 bits (83), Expect = 0.020
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 45 GVSGSGKSTIGESLATRLGVKFID 68
G S SGKS++ +A LGV ++
Sbjct: 9 GPSASGKSSVARRVAAALGVPYLS 32
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 34.9 bits (81), Expect = 0.026
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 37/110 (33%)
Query: 45 GVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLN------DEDR 92
G+S SGKST+ L +L +DGD NI + LN + DR
Sbjct: 32 GLSASGKSTLAVELEHQLVRDRRVHAYRLDGD------NI-----RFGLNKDLGFSEADR 80
Query: 93 RPWLNNINRIIH--QLNVDNLTGVLVCSAL-------RRNYRDIIRNNNR 133
NI RI +L D+ + ++ R R +
Sbjct: 81 N---ENIRRIAEVAKLFADS--NSIAITSFISPYRKDRDTARQLHEVATP 125
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 35.6 bits (82), Expect = 0.034
Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 43/222 (19%)
Query: 45 GVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
G+SG+GK+T+ +L L +DGD++ N + + EDR N+
Sbjct: 59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN-----LGFSPEDRE---ENV 110
Query: 100 NRI--IHQLNVDNLTGVLVCSAL-------RRNYRDIIRNNNRVVF-IYLKAEFGVILSR 149
RI + +L D G++ ++ R N R I + F +++ A V R
Sbjct: 111 RRIAEVAKLFADA--GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 168
Query: 150 ----LQKRA-----EHFMPADLLESQFQTLEEPDPLVEPDVRTV-SVNEPLEGIVSKSAI 199
L K+A + F D S+++ E P+ +++ D V + + ++ + I
Sbjct: 169 DVKGLYKKARAGEIKGFTGID---SEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDI 225
Query: 200 MPPTRAPPNYSDFVCVDDFEQF-----ALKVLRIRPRVMRDL 236
+P + +V + L L+I M+ +
Sbjct: 226 VPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWV 267
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 34.8 bits (81), Expect = 0.034
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 45 GVSGSGKSTIGESLATRLGVKFID 68
G +G+GKS++ LA LG +++D
Sbjct: 16 GPAGTGKSSVSRGLARALGARYLD 39
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 34.4 bits (80), Expect = 0.043
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 45 GVSGSGKSTIGESLATRLGVKFID 68
G + SGKST+ + +A G ++D
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLD 46
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 34.0 bits (79), Expect = 0.046
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 48 GSGKSTIGESLATRLGVKFIDGDHL 72
G+GKST+ E L + G ++ D +
Sbjct: 22 GTGKSTVCEILKNKYGAHVVNVDRI 46
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 34.3 bits (80), Expect = 0.050
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 45 GVSGSGKSTIGESLATRLGVKFID 68
G + +GKSTI + +A+ L + ++D
Sbjct: 10 GPAAAGKSTIAKRVASELSMIYVD 33
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 33.9 bits (77), Expect = 0.051
Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN-----------DE 90
V+ GV G G +T + L + ++ + S + +++ ++ L +
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 66
Query: 91 DRRPWLNNINRIIHQLNVDN--LTGVLVCSALRRNY----RDIIRNNNRVVFIYLKAEFG 144
+R +I + S + ++ N + I ++
Sbjct: 67 QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGD 126
Query: 145 VILSRLQK 152
IL R
Sbjct: 127 EILMRRMS 134
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 34.3 bits (80), Expect = 0.053
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 45 GVSGSGKSTIGESLATRLGVKFID 68
G SG+GK T+ +++A L +D
Sbjct: 12 GPSGAGKGTLCKAMAEALQWHLLD 35
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 33.5 bits (76), Expect = 0.097
Identities = 24/173 (13%), Positives = 48/173 (27%), Gaps = 35/173 (20%)
Query: 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI-------------------- 67
+ EG+ +I G GSGK+T +
Sbjct: 10 KGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 69
Query: 68 ----DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR-----IIHQLNVDNLTGVLVCS 118
+ QS + + +++ + + + N +
Sbjct: 70 YKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMY 129
Query: 119 ALRRNYRDIIRNNNRV---VFIYLKAEFGVILSRLQKRA---EHFMPADLLES 165
+ I + V + IYL+ V R+++RA E +P L+
Sbjct: 130 NTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQE 182
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 33.8 bits (78), Expect = 0.10
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESLA 59
GE V I+G +G GK+T + LA
Sbjct: 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLA 333
Score = 30.3 bits (69), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70
V I+G +G+GKST + LA +L +
Sbjct: 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN 79
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 33.1 bits (75), Expect = 0.11
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLG 63
+++P G +P V + G SGK + E+L +RLG
Sbjct: 2 SMAPLGG-APRLVLLFSGKRKSGKDFVTEALQSRLG 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.8 bits (78), Expect = 0.12
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESLA 59
+GE + I+G +G GK+T L
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILV 315
Score = 31.1 bits (71), Expect = 0.72
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70
+ ++G +G GK+T+ + LA + F D +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPN 57
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 33.5 bits (76), Expect = 0.13
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 37 PSTVFVIMGVSGSGKSTIGESLATRL 62
+ +I+G +GSGKS++ +++ L
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILVGL 47
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 32.5 bits (74), Expect = 0.13
Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 26/132 (19%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
V +I G+ GSGKS + L G K I + + K+ + L +
Sbjct: 3 VILITGMPGSGKSEFAKLLK-ERGAKVIV---------MSDVVRKRYSIEAKPGERLMDF 52
Query: 100 NRIIHQLNVDNLTGVLVCSALRRNYRDII----------------RNNNRVVFIYLKAEF 143
+ + ++ D + L L + D++ + V + + +
Sbjct: 53 AKRLREIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPP 112
Query: 144 GVILSRLQKRAE 155
+ R+ +R
Sbjct: 113 KIRYKRMIERLR 124
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 33.6 bits (78), Expect = 0.15
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 40 VFV-IMGVSGSGKST-IGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN 97
V + GVSGSGKST + ++L L F G ++P D+ A L
Sbjct: 524 VMTSVTGVSGSGKSTLVSQALVDALAAHF--GQPVNPDPEDDEDPADHTAGSARLGGDLA 581
Query: 98 NINRIIH 104
I R++
Sbjct: 582 QITRLVR 588
Score = 30.9 bits (71), Expect = 0.88
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 42 VIMGVSGSGKSTIGESLA 59
V GVSGSGKS SLA
Sbjct: 40 VFTGVSGSGKS----SLA 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 33.5 bits (77), Expect = 0.15
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESLA 59
GE S S + V+MG +G+GK+T+ + LA
Sbjct: 372 EGEFSDSEILVMMGENGTGKTTLIKLLA 399
Score = 30.8 bits (70), Expect = 1.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 40 VFVIMGVSGSGKSTIGESLA 59
V ++G +G GKST + LA
Sbjct: 105 VLGLVGTNGIGKSTALKILA 124
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 32.5 bits (75), Expect = 0.18
Identities = 12/14 (85%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 41 FV-IMGVSGSGKST 53
FV IMG SGSGKST
Sbjct: 33 FVSIMGPSGSGKST 46
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 33.0 bits (75), Expect = 0.19
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGV 64
+ ++ M T + + V+MG +G+GKS + LA +
Sbjct: 9 HHMDYASVAMAAAPTTTTTTNVSLRRQRHRKEK--LLVLMGATGTGKSRLSIDLAAHFPL 66
Query: 65 KFIDGD 70
+ I+ D
Sbjct: 67 EVINSD 72
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 33.1 bits (76), Expect = 0.21
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESLA 59
GE V I+G +G GK+T + LA
Sbjct: 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
Score = 29.6 bits (67), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 40 VFVIMGVSGSGKSTIGESLA 59
V I+G +G+GK+T + LA
Sbjct: 119 VVGIVGPNGTGKTTAVKILA 138
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 32.5 bits (74), Expect = 0.21
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 24 IMTTTLSPSGEGSPSTVFVIM--GVSGSGKSTIGESLATRLGVKFIDGDHLHP 74
TL + + F+I G + SGKS++ + LG +D
Sbjct: 6 DSEQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 58
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.5 bits (72), Expect = 0.32
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 37 PSTVFVIM--GVSGSGKSTIGESLATRLGVKFIDGDHLH 73
+ V+ G+S SGK+T+ L+ L + I H
Sbjct: 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein; structural genomics; 1.70A {Aquifex aeolicus}
PDB: 2pcl_A
Length = 224
Score = 31.7 bits (73), Expect = 0.33
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 41 FV-IMGVSGSGKST 53
FV I+G SGSGKST
Sbjct: 32 FVSIIGASGSGKST 45
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.0 bits (72), Expect = 0.35
Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 28/231 (12%)
Query: 25 MTTTLSPSGEGSPSTVFVIMGVSGSGKST----IGESLATRLGVKFIDGD------HLHP 74
M + G S + V +G +GSGK+T G L V +++ D P
Sbjct: 1 MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEP 60
Query: 75 QSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL--NVDNLTGVLVCSALRRNYRDIIRNNN 132
++ + + + E P I +L + ++ +Y I
Sbjct: 61 SIDVREFVTVEEIMREGYGP-NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQ 119
Query: 133 RVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLE- 191
F++ + ++ L + + + + +P+ + ++ L
Sbjct: 120 METFLFHEF-GVRLMENLPYPLVVY----ISDPEILK--KPNDYCFVRFFALLIDLRLGA 172
Query: 192 ---GIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKR 239
++K ++ + F +D L++ P + ++ +
Sbjct: 173 TTIPALNKVDLLSEEEKERHRKYFEDIDYLTA----RLKLDPSMQGLMAYK 219
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 31.8 bits (73), Expect = 0.37
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 40 VFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH-PQSNIDKMSAK 84
V V++G SGSGKST L L G IDG +L +N++K+ +
Sbjct: 52 VVVVIGPSGSGKSTFLRCL-NLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 31.4 bits (72), Expect = 0.39
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 36 SPSTVFVIM--GVSGSGKSTIGESLATRLG 63
S FVI G + SGK+T+ ++LA LG
Sbjct: 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 31.9 bits (73), Expect = 0.42
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 11/44 (25%)
Query: 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDG 69
SG+ TV ++ G SG GKST L RL G+ IDG
Sbjct: 414 KSGQ----TVALV-GNSGCGKSTTV-QLMQRLYDPLDGMVSIDG 451
Score = 28.1 bits (63), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 43 IMGVSGSGKSTIGESLATRL-----GVKFIDG 69
++G SG GKST+ L R G F+DG
Sbjct: 1064 LVGSSGCGKSTVV-QLLERFYDPMAGSVFLDG 1094
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, binding; 1.70A {Thermus
thermophilus} PDB: 2d2f_A*
Length = 250
Score = 31.3 bits (72), Expect = 0.46
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLA 59
P GE V +MG +G+GKST+G+ LA
Sbjct: 27 PKGE-----VHALMGPNGAGKSTLGKILA 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.5 bits (68), Expect = 0.70
Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN----------- 88
+ ++ G+ G GKST+ + L + I+ ++ + + K
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 89 DEDRRPWLNNINRIIHQLNVDNLTGVLV----CSALRRNY-----RDIIRNNNRVVFIYL 139
++ ++ ++ I + + + Y +I N V L
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122
Query: 140 KAEFGVILSRLQKRAE 155
+A+ +ILSR ++
Sbjct: 123 EADPKIILSRQKRDTT 138
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.6 bits (70), Expect = 0.75
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLA 59
GE V IMG +GSGKST+ +LA
Sbjct: 44 HPGE-----VHAIMGPNGSGKSTLSATLA 67
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 30.2 bits (68), Expect = 0.94
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 38 STVFVIM--GVSGSGKSTIGESLATRLGVKFI 67
S F+I GV+ SGK+T+ ++L L +
Sbjct: 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV 50
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Length = 169
Score = 29.8 bits (66), Expect = 0.97
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 295 EELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL----TVDTNVFGTRYADI 350
++ + K+ W + ++ D+E+ ++ A K L+ V + G +I
Sbjct: 82 DDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEI 141
Query: 351 RNKFNMPSHLNIEELAE 367
R FN+ + EE A
Sbjct: 142 RRTFNIVNDFTPEEEAA 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 30.6 bits (68), Expect = 1.0
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 25 MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS-NIDKMSA 83
+ + S S + +F I S K + + L + +ID +
Sbjct: 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91
Query: 84 KQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYL 139
+I ++ +NL G + AL ++ + R I +
Sbjct: 92 AGM---------DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILI 138
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.9 bits (71), Expect = 1.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 42 VIMGVSGSGKST-IGESLATRL 62
+ GVSGSGKST + E L L
Sbjct: 654 AVTGVSGSGKSTLVNEVLYKAL 675
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 30.6 bits (70), Expect = 1.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 42 VIMGVSGSGKST-IGESLATRL 62
+ GVSGSGKST + E L L
Sbjct: 352 AVTGVSGSGKSTLVNEVLYKAL 373
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.9 bits (71), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 42 VIMGVSGSGKST-IGESLATRLGVKF 66
+ GVSGSGKS+ + E+L L
Sbjct: 614 CVTGVSGSGKSSLVMETLYPALMNLL 639
Score = 30.5 bits (70), Expect = 1.3
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 4/18 (22%)
Query: 42 VIMGVSGSGKSTIGESLA 59
VI GVSGSGKS SLA
Sbjct: 28 VITGVSGSGKS----SLA 41
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 40 VFVIMGVSGSGKSTIGESL 58
+ +I+G +GSGKS++ +++
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 40 VFVIMGVSGSGKST 53
V I+G SGSGKST
Sbjct: 34 VISIIGSSGSGKST 47
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 42 VIMGVSGSGKST-IGESLATRL 62
+ GVSGSGKST + + LA L
Sbjct: 672 SVTGVSGSGKSTLVNDILAAVL 693
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 30.2 bits (67), Expect = 1.2
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI---DKMS 82
+ S S EG+ I G +GKST L + + + N+
Sbjct: 12 CPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEF 71
Query: 83 AKQPLNDEDRRPWLNNI 99
+ ++ ++ L +
Sbjct: 72 EELTMSQKNGGNVLQMM 88
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.4 bits (67), Expect = 1.2
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 14/135 (10%)
Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKF--IDGDH---LHPQSNIDKMSAKQPLNDEDR- 92
T F++ G GSGK+++ ++ ID D HP N D++ +
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP--NFDELVKLYEKDVVKHV 91
Query: 93 RPWLNNINRIIHQLNVDNLTGVLVCSALR------RNYRDIIRNNNRVVFIYLKAEFGVI 146
P+ N + I D +++ R + + +
Sbjct: 92 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151
Query: 147 LSRLQKRAEHFMPAD 161
+R E D
Sbjct: 152 YLGTIERYETMYADD 166
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 29.8 bits (68), Expect = 1.4
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 41/140 (29%)
Query: 48 GSGKSTIGESLATRLGVKFIDGDH------------------------LHPQSNID--KM 81
GSGK+TI LGV +D D L Q ++ +
Sbjct: 12 GSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAAL 70
Query: 82 SAKQPLNDEDRRPWLNNI------NRIIHQLNVDNLTGVLVCSAL--RRNYRDIIRNNNR 133
++ N ++ + WLNN+ R+ +L L L + +R
Sbjct: 71 -RERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALC---DR 126
Query: 134 VVFIYLKAEFGVILSRLQKR 153
++ + + + L+R +R
Sbjct: 127 ILVVDVSPQ--TQLARSAQR 144
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 29.2 bits (66), Expect = 1.7
Identities = 7/20 (35%), Positives = 16/20 (80%)
Query: 40 VFVIMGVSGSGKSTIGESLA 59
+ +I+G +GSGKS++ +++
Sbjct: 25 INLIIGQNGSGKSSLLDAIL 44
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.8
Identities = 43/257 (16%), Positives = 62/257 (24%), Gaps = 83/257 (32%)
Query: 15 WPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVS-----GSGKST------IGE-SLATRL 62
P V I L G V V+ G + GS T GE SL +
Sbjct: 796 LKPYKQVKQIAPAELE--GLLDLERVIVVTGFAEVGPWGSA-RTRWEMEAFGEFSLEGCV 852
Query: 63 G-------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL 115
+ + +G L W VD+ T
Sbjct: 853 EMAWIMGFISYHNG----------------NLKGRPYTGW------------VDSKTKEP 884
Query: 116 VC-SALRRNYRDIIRNNNRVVFIYLKAEFGVIL-SRLQKRAEHFMPADL--LESQFQTLE 171
V ++ Y I ++ + I F + + E + DL E+ +T E
Sbjct: 885 VDDKDVKAKYETSILEHSGIRLIE-PELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE 943
Query: 172 EPDPLVEPDVRTVSVNEPLEGIVS-KSAIMPPTRAPPNYSDFVC---------------- 214
+ V + E E V T P F
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLKGA---TLYIPKALRFDRLVAGQIPTGWNAKTYG 1000
Query: 215 --------VDDFEQFAL 223
VD F L
Sbjct: 1001 ISDDIISQVDPITLFVL 1017
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.2 bits (65), Expect = 1.8
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 33/157 (21%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFI-----------------DGDHLHPQSNIDKMSAK 84
I G G+GKSTI ++ +LG + Q + +K
Sbjct: 4 AIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSK 63
Query: 85 QPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA-----LRRNYRDIIRNNNRV----- 134
Q ++ + + + + + + Y +++ N ++
Sbjct: 64 QLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKL 123
Query: 135 ---VFIYLKAEFGVILSRLQKRA---EHFMPADLLES 165
+ IYL+ +SR++KR E + + E+
Sbjct: 124 SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWET 160
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.4 bits (66), Expect = 1.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 35 GSPSTVFVIM--GVSGSGKSTIGESLATRLGVKFIDGDHLHP 74
F+I G + SGKST+ E + LG ++
Sbjct: 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKV 61
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.9 bits (64), Expect = 1.9
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDK 80
V+ ++G SGK+T+ E G + H +
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPAR 49
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 29.4 bits (67), Expect = 2.0
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 28/78 (35%)
Query: 48 GSGKSTIGESLATRLGVKFIDGDH------------------------LHPQSNID--KM 81
GSGKST+ + A LG+ ID D + + +
Sbjct: 14 GSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRAL 72
Query: 82 SAKQPLNDEDRRPWLNNI 99
++ + + + WLN +
Sbjct: 73 -RERIFANPEEKNWLNAL 89
>2lci_A Protein OR36; structural genomics, northeast structural genomics
consortiu PSI-biology, protein structure initiative, de
novo protein; NMR {Artificial gene}
Length = 134
Score = 28.6 bits (63), Expect = 2.0
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 310 LYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKT 369
L + E+ K + + E GY+ V V+ + +++ +++LAE+
Sbjct: 6 LINTNNDELIKKIKKEVENQGYQ--VRDVNDS------DELKK--------EMKKLAEEK 49
Query: 370 PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 409
L I D+++ K +++ K GYK +L D +
Sbjct: 50 NFEKI---LIISNDKQLLKEMLELISKLGYKVFLLLQDQD 86
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.4 bits (65), Expect = 2.1
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 41 FVIM--GVSGSGKSTIGESL-ATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN 97
F +M G SG GKST+ SL T L G + + +K + + + L
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68
Query: 98 NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH 156
++ VDN ++ +I + YL AE V ++
Sbjct: 69 IVDTPGFGDAVDN----------SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQ 117
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 29.4 bits (66), Expect = 2.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 40 VFVIMGVSGSGKSTIGESL 58
+ I+G +GSGKS+I E++
Sbjct: 27 IVAIIGENGSGKSSIFEAV 45
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 29.2 bits (66), Expect = 2.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 48 GSGKSTIGESLATRLGVKFIDGDHL 72
GSGKS++ + L LG ID DHL
Sbjct: 85 GSGKSSVAQRLK-NLGAYIIDSDHL 108
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.2 bits (65), Expect = 2.8
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 41 FVIMGVSGSGKSTIGESLATRL 62
+ I+ G+GKS + L R
Sbjct: 38 WTILAKPGAGKSFTAKMLLLRE 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 29.0 bits (66), Expect = 2.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 43 IMGVSGSGKSTIGESLATRL-----GVKFIDG 69
I+G SGSGKST+ L R G IDG
Sbjct: 40 IVGRSGSGKSTLT-KLIQRFYIPENGQVLIDG 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 28.7 bits (65), Expect = 3.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTI 54
T + + V V+ G S GKST+
Sbjct: 8 TKPTARGQPAAVGRVVVLSGPSAVGKSTV 36
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.1 bits (65), Expect = 3.3
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 40 VFVIMGVSGSGKSTI 54
+ V+ G +G+GKS++
Sbjct: 25 ITVVEGPNGAGKSSL 39
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 3.6
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 36 SPSTVFV-IMGVSGSGKSTIGESLATRLG 63
P V + G GSGKST+ LA L
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 28.3 bits (64), Expect = 4.2
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 31/85 (36%)
Query: 48 GSGKSTIGESLATRLGVKFIDGDH------------------------LHPQSNID--KM 81
G GKST+ + LG +D D L + NID K+
Sbjct: 11 GCGKSTVAQMFR-ELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKL 69
Query: 82 SAKQPLNDEDRRPWLNNINRIIHQL 106
+ DE++ L I H+
Sbjct: 70 ADIV-FKDEEKLRKLEE---ITHRA 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 29.0 bits (65), Expect = 4.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67
P ++ G G+GK+ I ++A G F
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 28.3 bits (64), Expect = 4.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 25 MTTTLSPSGEGSPSTVFVIMGVSGSGKSTI 54
++ L P G + VI G SG GK T+
Sbjct: 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTL 39
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 28.7 bits (64), Expect = 4.3
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 32 SGEGSPSTVFVIM-GVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKM 81
SGE S+V + G G ST+ + A V +++ + D
Sbjct: 137 SGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE---QCGTTDVF 189
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 28.3 bits (64), Expect = 4.7
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 43 IMGVSGSGKSTIGESLATRL----GVKFIDG 69
++G +GSGKSTI L R G I G
Sbjct: 51 LVGHTGSGKSTIA-KLLYRFYDAEGDIKIGG 80
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.1 bits (62), Expect = 4.8
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVK 65
+ +G + +++G +G+GKS G S+ LG +
Sbjct: 13 NLYFQGESTRRLILVGRTGAGKSATGNSI---LGQR 45
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 28.5 bits (64), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 42 VIMGVSGSGKSTIGESLATRL----GVKFIDG 69
++G +GSGKST+ + RL G IDG
Sbjct: 51 GLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDG 81
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 28.2 bits (63), Expect = 4.8
Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 33/188 (17%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS-----NIDKMSAKQPLNDEDRRP 94
+ +I G + SGK+ + +A G + D I S + PL E
Sbjct: 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALD-----RVQCCPQIATGSGR-PLESE---- 52
Query: 95 WLNNINRIIHQLNVDNLTGVLVCSA-----LRRNYRDIIRNNNRVVFI------YLKA-- 141
+ +D+ R + R + + + L
Sbjct: 53 ----LQSTRRIY-LDSRPLTEGILDAESAHRRLIFEVDWRKSEEGLILEGGSISLLNCMA 107
Query: 142 EFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP 201
+ S Q + D + + + S+ E L + + A P
Sbjct: 108 KSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAELWNYPAARP 167
Query: 202 PTRAPPNY 209
Y
Sbjct: 168 ILEDIDGY 175
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 27.9 bits (63), Expect = 4.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 48 GSGKSTIGESLATRLGVKFIDGD 70
GSGKST+ L G +D D
Sbjct: 18 GSGKSTVAALLR-SWGYPVLDLD 39
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.9 bits (61), Expect = 4.9
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLH 73
+ SG+GK+T+ + L L G++ H H
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone
receptor, abscisic acid, hormone recepto; HET: A8S;
2.05A {Arabidopsis thaliana}
Length = 208
Score = 28.2 bits (62), Expect = 5.0
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 17 PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESL------ATRLGVKFIDGD 70
PQ I + +S E + +SG +T E L G G+
Sbjct: 79 PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 138
Query: 71 HLHPQSNIDKMSAKQPLNDEDRRPW 95
H + +E+ R W
Sbjct: 139 HRLRNYKSVTTVHRFEKEEEEERIW 163
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 28.2 bits (62), Expect = 5.1
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN 97
I G GKST + L + + + NI ++ + L+
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 28.3 bits (64), Expect = 5.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70
+MG + +GK+ + +LA L + I D
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVD 37
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.7 bits (61), Expect = 5.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFI 67
+ I+G S SGK+T+ + L + +
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPILRERGL 31
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70
V VI G +G GKS + LA + + I+ D
Sbjct: 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 27.6 bits (62), Expect = 6.2
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 42 VIMGVSGSGKSTIGESLATRL---GVKFI 67
V G+ SGK+T ++ + +K++
Sbjct: 8 VFEGLDKSGKTTQCMNIMESIPANTIKYL 36
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria
phage MU} SCOP: a.4.1.14
Length = 129
Score = 27.2 bits (60), Expect = 6.3
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 346 RYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQR 393
R I N FN N+ EL + T I R R + Q
Sbjct: 82 RDLRIWNDFN---GRNVSELTTRYGVTFNTVYKAIRRMRRLKYRQYQP 126
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 28.1 bits (62), Expect = 6.3
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 43 IMGVSGSGKSTIGESLATRLG-----VKFIDGDHLH 73
+ G SG+G ST+ + I+GD H
Sbjct: 10 VTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 27.5 bits (62), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 42 VIMGVSGSGKSTIGESLATRLGVKFI 67
VIMG GSGK T+ + T +K +
Sbjct: 11 VIMGAPGSGKGTVSSRITTHFELKHL 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.3
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 164 ESQ-FQTLEEPDPLVEPD-VRTVSVNEPLE 191
E Q + L+ L D +++ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Length = 446
Score = 28.0 bits (62), Expect = 6.7
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 17/101 (16%)
Query: 315 DREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD---IR--------NKFNMPSHL--- 360
E LV + G+K LVL AD IR F P
Sbjct: 210 GLEELAELVDKIVALGHKQLVLDPGARETSRAIADFTQIRRLAIKKRFRSFGYPIIALTT 269
Query: 361 ---NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAG 398
++E+ + TK+ L + R L + +
Sbjct: 270 AANPLDEVLQAVNYVTKYASLVVLRTDAKEHLLPLLSWRQN 310
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 27.9 bits (63), Expect = 7.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGD 70
+MG + SGK+ + L L V+ I D
Sbjct: 12 AIFLMGPTASGKTALAIELRKILPVELISVD 42
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 27.6 bits (62), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 24 IMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI 67
+ T L S VI+G GSGK T+ + +A G++ +
Sbjct: 13 LGTENLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 27.5 bits (61), Expect = 8.0
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL 62
+ + + G G+GKST E L
Sbjct: 66 QSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 27.9 bits (63), Expect = 8.0
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 125 RDIIRNNNRVVFIYLKAEFGVILSRLQKRAE---HFMPADL 162
R+I ++N + E G IL R+Q++A P L
Sbjct: 109 REIDTSSNTIT-----VEAGAILQRVQEKAAEVDRLFPLSL 144
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic
vibriobactin-binding protein; iron-vibriobactin
transport protein; HET: VBN; 1.45A {Vibrio cholerae}
PDB: 3r5s_A*
Length = 305
Score = 27.4 bits (61), Expect = 8.6
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 21/83 (25%)
Query: 239 RTLVTDALGHPVQIP-------------------IGVSPAAMQKLAHEEGEIGNAAAVGE 279
RT +A G IP I A + + E
Sbjct: 7 RT-FQNADGSITTIPSQPKRILSTAVTVTGTLLAIDAPVIASAA-TTQSTFFEQWRKLAE 64
Query: 280 VGGIYILSTISTTSIEELAEKTP 302
+ + L + +E + + P
Sbjct: 65 LRQVKKLWPAGSVDLESVYVEQP 87
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 27.7 bits (62), Expect = 8.8
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 239 RTLVTDALG--HP-VQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIE 295
RT T+ G HP +Q MQ + E+ AAAV GG+ LS ++ S E
Sbjct: 5 RTRFTETFGVEHPIMQ-------GGMQWVG--RAEM--AAAVANAGGLATLSALTQPSPE 53
Query: 296 ELAE 299
LA
Sbjct: 54 ALAA 57
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 27.3 bits (60), Expect = 8.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 35 GSPSTVFVIMGVSGSGKSTIGESL 58
+ V++G +G+GKS G S+
Sbjct: 26 RNSQLRIVLVGKTGAGKSATGNSI 49
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.2 bits (60), Expect = 9.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 42 VIMGVSGSGKSTI 54
++MG+ SGKS+I
Sbjct: 24 LLMGLRRSGKSSI 36
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 27.5 bits (62), Expect = 9.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDG 69
G+ T V G +GSGKST+ +L L G +DG
Sbjct: 43 YPGK---VTALV--GPNGSGKSTVA-ALLQNLYQPTGGKVLLDG 80
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.5 bits (61), Expect = 9.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 34 EGSPSTVFVIMGVSGSGKSTIG 55
+ S +++G G GKS+
Sbjct: 32 KDMNSMTVLVLGKGGVGKSSTV 53
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.3 bits (60), Expect = 9.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESL 58
+++G +G+GKS G S+
Sbjct: 16 QCASRSELRIILVGKTGTGKSAAGNSI 42
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 9.6
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 41 FVIM--GVSGSGKSTIGESL-ATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN 97
F +M G SG GKST+ SL T L G + + +K + + + L
Sbjct: 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 91
Query: 98 NINRIIHQLNVDN 110
++ VDN
Sbjct: 92 IVDTPGFGDAVDN 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,707,186
Number of extensions: 413649
Number of successful extensions: 1759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1729
Number of HSP's successfully gapped: 204
Length of query: 433
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 337
Effective length of database: 4,021,377
Effective search space: 1355204049
Effective search space used: 1355204049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)