Query psy1678
Match_columns 297
No_of_seqs 279 out of 1998
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:50:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0628|consensus 100.0 1.5E-56 3.4E-61 412.2 22.0 239 17-297 1-239 (511)
2 PLN02590 probable tyrosine dec 100.0 8.8E-49 1.9E-53 381.2 26.6 231 57-297 52-291 (539)
3 PLN02880 tyrosine decarboxylas 100.0 4.2E-47 9E-52 368.3 26.9 230 58-297 9-243 (490)
4 PF00282 Pyridoxal_deC: Pyrido 100.0 2.5E-43 5.4E-48 331.5 17.0 198 93-297 1-198 (373)
5 TIGR03811 tyr_de_CO2_Ent tyros 100.0 1.1E-39 2.3E-44 320.6 24.8 236 49-297 4-282 (608)
6 TIGR03799 NOD_PanD_pyr putativ 100.0 1.5E-37 3.2E-42 302.7 23.5 229 62-297 22-269 (522)
7 KOG0629|consensus 100.0 7.5E-38 1.6E-42 286.1 19.2 220 64-297 33-257 (510)
8 COG0076 GadB Glutamate decarbo 100.0 1.4E-29 3E-34 243.0 20.3 203 76-291 5-209 (460)
9 PLN02263 serine decarboxylase 100.0 1.6E-29 3.5E-34 241.3 16.2 154 111-297 75-232 (470)
10 TIGR01788 Glu-decarb-GAD gluta 99.9 6.7E-26 1.5E-30 216.7 18.8 172 101-287 14-186 (431)
11 PLN03032 serine decarboxylase; 99.9 1.6E-22 3.5E-27 190.0 15.9 155 111-297 8-165 (374)
12 PRK02769 histidine decarboxyla 99.9 4.9E-22 1.1E-26 187.6 15.9 153 111-297 7-164 (380)
13 cd06450 DOPA_deC_like DOPA dec 99.8 6.1E-20 1.3E-24 170.4 16.9 151 134-296 1-151 (345)
14 KOG1383|consensus 99.7 2.3E-16 4.9E-21 147.1 9.7 164 101-288 53-219 (491)
15 PRK13520 L-tyrosine decarboxyl 99.5 6.2E-13 1.3E-17 124.6 15.0 150 109-287 2-151 (371)
16 TIGR03812 tyr_de_CO2_Arch tyro 99.4 5.1E-12 1.1E-16 118.6 16.3 153 110-287 1-153 (373)
17 COG1104 NifS Cysteine sulfinat 99.4 2.2E-12 4.7E-17 120.0 10.7 133 133-288 3-142 (386)
18 PRK00451 glycine dehydrogenase 99.3 1.5E-11 3.2E-16 118.8 13.7 163 92-286 31-203 (447)
19 TIGR00461 gcvP glycine dehydro 99.3 5.1E-11 1.1E-15 122.3 16.4 151 110-286 467-624 (939)
20 PRK05367 glycine dehydrogenase 99.2 4E-10 8.6E-15 117.2 17.0 154 109-286 478-636 (954)
21 TIGR03531 selenium_SpcS O-phos 99.2 2.4E-10 5.3E-15 109.7 11.3 149 102-286 28-200 (444)
22 PRK04366 glycine dehydrogenase 98.9 1.7E-08 3.6E-13 98.6 14.9 161 102-287 44-208 (481)
23 PLN02590 probable tyrosine dec 98.9 5.3E-09 1.1E-13 102.8 10.5 123 16-159 53-186 (539)
24 TIGR03402 FeS_nifS cysteine de 98.7 1.5E-07 3.3E-12 88.7 12.1 128 134-286 2-135 (379)
25 KOG1549|consensus 98.7 9.7E-08 2.1E-12 89.8 10.0 136 128-288 40-182 (428)
26 PLN02651 cysteine desulfurase 98.7 1.3E-07 2.9E-12 88.8 11.0 96 167-286 39-137 (364)
27 PLN02880 tyrosine decarboxylas 98.6 1.8E-07 3.8E-12 91.6 10.1 123 16-159 9-138 (490)
28 PRK02948 cysteine desulfurase; 98.6 3.8E-07 8.2E-12 86.1 11.5 129 134-286 3-137 (381)
29 PRK14012 cysteine desulfurase; 98.6 7.8E-07 1.7E-11 84.8 12.5 88 175-286 53-143 (404)
30 TIGR02006 IscS cysteine desulf 98.6 6.5E-07 1.4E-11 85.3 11.9 130 132-286 4-141 (402)
31 TIGR03235 DNA_S_dndA cysteine 98.5 9.7E-07 2.1E-11 82.4 11.9 97 167-286 38-137 (353)
32 cd06453 SufS_like Cysteine des 98.5 9.5E-07 2.1E-11 82.9 12.0 101 162-286 34-138 (373)
33 PRK12566 glycine dehydrogenase 98.4 5.8E-06 1.3E-10 85.3 14.4 156 107-285 477-636 (954)
34 TIGR01979 sufS cysteine desulf 98.3 9E-06 2E-10 77.2 11.6 130 133-286 20-158 (403)
35 COG1003 GcvP Glycine cleavage 98.2 4.1E-06 8.9E-11 78.6 8.4 102 167-289 105-206 (496)
36 PRK09331 Sep-tRNA:Cys-tRNA syn 98.2 1.8E-05 3.9E-10 75.1 13.0 84 174-287 66-151 (387)
37 cd06451 AGAT_like Alanine-glyo 98.2 1.8E-05 3.9E-10 73.8 11.9 95 165-286 26-122 (356)
38 TIGR03403 nifS_epsilon cystein 98.2 2.7E-05 5.8E-10 73.6 12.4 94 171-286 43-139 (382)
39 PF01212 Beta_elim_lyase: Beta 98.1 1.1E-05 2.3E-10 73.9 9.1 94 162-289 24-120 (290)
40 cd00613 GDC-P Glycine cleavage 98.1 5.9E-05 1.3E-09 71.4 14.1 96 166-286 59-158 (398)
41 PRK09295 bifunctional cysteine 98.1 1.9E-05 4.1E-10 75.3 10.7 130 133-286 25-163 (406)
42 TIGR03392 FeS_syn_CsdA cystein 98.1 2.9E-05 6.2E-10 73.8 11.3 130 133-286 18-156 (398)
43 PLN02414 glycine dehydrogenase 98.1 1.4E-05 3.1E-10 83.5 9.9 95 167-286 564-662 (993)
44 PRK10874 cysteine sulfinate de 98.1 2.4E-05 5.3E-10 74.3 10.2 130 133-286 21-159 (401)
45 cd06452 SepCysS Sep-tRNA:Cys-t 98.0 6.7E-05 1.5E-09 70.3 12.2 83 176-288 49-133 (361)
46 KOG1368|consensus 98.0 1.5E-05 3.3E-10 71.6 6.7 103 151-286 38-145 (384)
47 PLN02721 threonine aldolase 98.0 2.9E-05 6.4E-10 72.1 8.7 91 164-287 37-130 (353)
48 COG0520 csdA Selenocysteine ly 97.9 9.1E-05 2E-09 70.9 11.1 129 133-286 24-161 (405)
49 PF00266 Aminotran_5: Aminotra 97.9 0.00012 2.7E-09 68.8 11.3 99 163-285 35-137 (371)
50 TIGR01977 am_tr_V_EF2568 cyste 97.8 0.00015 3.2E-09 68.1 11.1 90 170-286 43-136 (376)
51 cd00615 Orn_deC_like Ornithine 97.8 0.00068 1.5E-08 61.9 14.8 83 175-286 63-151 (294)
52 TIGR02539 SepCysS Sep-tRNA:Cys 97.8 0.00037 8.1E-09 65.7 13.0 84 175-288 55-140 (370)
53 cd00609 AAT_like Aspartate ami 97.8 0.00022 4.8E-09 65.5 11.2 104 154-283 23-128 (350)
54 cd06502 TA_like Low-specificit 97.8 0.00014 3.1E-09 67.1 9.7 81 175-286 36-119 (338)
55 PRK08361 aspartate aminotransf 97.8 0.0003 6.5E-09 66.7 12.1 115 146-286 49-165 (391)
56 PLN02855 Bifunctional selenocy 97.8 0.00029 6.3E-09 67.6 11.7 131 132-286 33-172 (424)
57 COG2008 GLY1 Threonine aldolas 97.7 0.00011 2.3E-09 67.8 7.7 92 161-286 29-123 (342)
58 TIGR01976 am_tr_V_VC1184 cyste 97.7 0.00047 1E-08 65.3 11.8 128 133-286 19-155 (397)
59 cd00616 AHBA_syn 3-amino-5-hyd 97.6 0.00029 6.3E-09 65.4 9.3 89 164-285 15-104 (352)
60 PRK09082 methionine aminotrans 97.6 0.00067 1.5E-08 64.2 11.8 113 149-286 49-162 (386)
61 TIGR03301 PhnW-AepZ 2-aminoeth 97.6 0.00098 2.1E-08 61.7 12.3 91 171-286 31-122 (355)
62 TIGR02326 transamin_PhnW 2-ami 97.5 0.00092 2E-08 62.6 11.3 93 169-286 33-126 (363)
63 PRK07179 hypothetical protein; 97.5 0.00098 2.1E-08 63.6 11.6 119 128-286 58-179 (407)
64 PRK06108 aspartate aminotransf 97.5 0.0015 3.2E-08 61.5 12.4 113 148-286 42-157 (382)
65 PF01041 DegT_DnrJ_EryC1: DegT 97.5 0.00085 1.8E-08 63.1 10.5 104 150-288 9-114 (363)
66 PRK11658 UDP-4-amino-4-deoxy-L 97.4 0.0014 3E-08 62.2 11.3 89 165-286 31-120 (379)
67 PLN02409 serine--glyoxylate am 97.4 0.0016 3.5E-08 62.2 11.1 95 166-287 37-133 (401)
68 TIGR02379 ECA_wecE TDP-4-keto- 97.4 0.002 4.2E-08 61.1 11.4 88 166-286 30-118 (376)
69 PRK08960 hypothetical protein; 97.4 0.003 6.6E-08 59.8 12.7 113 148-286 50-164 (387)
70 PRK05764 aspartate aminotransf 97.3 0.0047 1E-07 58.4 13.6 114 147-286 48-163 (393)
71 PLN02656 tyrosine transaminase 97.3 0.0084 1.8E-07 57.3 15.3 114 147-286 52-168 (409)
72 PTZ00433 tyrosine aminotransfe 97.3 0.0045 9.7E-08 59.2 13.3 122 145-286 52-176 (412)
73 PRK05957 aspartate aminotransf 97.3 0.0035 7.5E-08 59.5 12.4 114 148-286 45-159 (389)
74 PRK06207 aspartate aminotransf 97.3 0.0048 1E-07 58.9 13.5 100 162-286 73-177 (405)
75 PRK12414 putative aminotransfe 97.3 0.0046 1E-07 58.5 12.9 99 163-286 62-161 (384)
76 PRK15407 lipopolysaccharide bi 97.3 0.004 8.6E-08 60.3 12.5 96 166-286 62-158 (438)
77 PRK11706 TDP-4-oxo-6-deoxy-D-g 97.2 0.0027 5.9E-08 60.0 10.8 83 175-286 35-118 (375)
78 cd01494 AAT_I Aspartate aminot 97.2 0.0019 4.1E-08 52.7 8.5 75 175-277 4-79 (170)
79 PRK07309 aromatic amino acid a 97.2 0.0059 1.3E-07 57.9 12.6 95 167-286 67-162 (391)
80 PLN00175 aminotransferase fami 97.2 0.0083 1.8E-07 57.5 13.7 114 148-286 72-186 (413)
81 PRK07777 aminotransferase; Val 97.2 0.0068 1.5E-07 57.3 13.0 110 152-286 46-158 (387)
82 cd06454 KBL_like KBL_like; thi 97.2 0.0077 1.7E-07 55.6 13.0 122 129-287 6-127 (349)
83 PRK06225 aspartate aminotransf 97.2 0.0065 1.4E-07 57.3 12.6 84 175-286 70-156 (380)
84 PRK07337 aminotransferase; Val 97.2 0.0053 1.1E-07 58.1 12.0 112 149-286 49-162 (388)
85 cd00378 SHMT Serine-glycine hy 97.1 0.0026 5.7E-08 60.3 9.4 93 165-286 59-159 (402)
86 PLN02231 alanine transaminase 97.1 0.021 4.6E-07 56.7 16.0 107 161-292 162-270 (534)
87 TIGR03588 PseC UDP-4-keto-6-de 97.1 0.0067 1.5E-07 57.3 12.0 89 165-286 27-116 (380)
88 TIGR01814 kynureninase kynuren 97.1 0.0066 1.4E-07 57.9 12.0 83 178-286 77-167 (406)
89 PRK07682 hypothetical protein; 97.1 0.0066 1.4E-07 57.2 11.8 100 162-286 52-153 (378)
90 PRK08912 hypothetical protein; 97.1 0.0094 2E-07 56.3 12.9 98 163-285 59-157 (387)
91 PRK01688 histidinol-phosphate 97.1 0.0027 5.9E-08 59.4 8.8 84 174-284 60-143 (351)
92 PF01276 OKR_DC_1: Orn/Lys/Arg 97.1 0.0031 6.8E-08 60.3 9.2 141 114-288 3-164 (417)
93 PRK10534 L-threonine aldolase; 97.0 0.0036 7.7E-08 57.8 9.3 90 163-286 30-122 (333)
94 PTZ00377 alanine aminotransfer 97.0 0.022 4.8E-07 55.7 15.0 105 162-291 110-216 (481)
95 PF00155 Aminotran_1_2: Aminot 97.0 0.0034 7.4E-08 58.5 8.9 105 162-291 39-146 (363)
96 PRK04870 histidinol-phosphate 97.0 0.011 2.3E-07 55.2 12.1 85 175-286 67-151 (356)
97 PRK06836 aspartate aminotransf 97.0 0.015 3.2E-07 55.3 13.0 114 147-286 50-167 (394)
98 PLN02368 alanine transaminase 96.9 0.026 5.6E-07 54.2 14.5 105 162-291 102-208 (407)
99 COG0399 WecE Predicted pyridox 96.9 0.007 1.5E-07 57.1 10.3 105 148-287 17-122 (374)
100 TIGR03537 DapC succinyldiamino 96.9 0.019 4E-07 53.6 13.2 103 162-286 31-135 (350)
101 PTZ00094 serine hydroxymethylt 96.9 0.0031 6.6E-08 61.2 8.0 92 167-286 76-180 (452)
102 PRK08636 aspartate aminotransf 96.9 0.033 7.2E-07 53.0 15.0 119 145-289 49-170 (403)
103 PRK13479 2-aminoethylphosphona 96.9 0.01 2.2E-07 55.6 11.2 94 167-286 33-128 (368)
104 TIGR01822 2am3keto_CoA 2-amino 96.9 0.011 2.3E-07 56.0 11.3 81 175-290 87-167 (393)
105 PRK05942 aspartate aminotransf 96.9 0.018 3.9E-07 54.7 12.6 100 162-286 68-169 (394)
106 PLN02483 serine palmitoyltrans 96.9 0.019 4.1E-07 56.4 13.0 126 127-288 103-228 (489)
107 PRK07683 aminotransferase A; V 96.8 0.018 3.8E-07 54.6 12.4 114 148-286 46-160 (387)
108 PLN00145 tyrosine/nicotianamin 96.8 0.018 3.8E-07 55.6 12.2 99 162-286 89-189 (430)
109 TIGR01265 tyr_nico_aTase tyros 96.8 0.042 9E-07 52.4 14.7 113 148-286 53-168 (403)
110 PRK07324 transaminase; Validat 96.8 0.0093 2E-07 56.3 10.0 69 199-286 82-152 (373)
111 TIGR01141 hisC histidinol-phos 96.8 0.0062 1.3E-07 56.5 8.6 83 175-285 58-140 (346)
112 PRK05387 histidinol-phosphate 96.8 0.0062 1.3E-07 56.7 8.6 80 175-282 64-143 (353)
113 PRK06939 2-amino-3-ketobutyrat 96.8 0.017 3.6E-07 54.5 11.5 85 169-288 85-169 (397)
114 PRK05166 histidinol-phosphate 96.8 0.007 1.5E-07 57.0 8.9 84 175-286 75-158 (371)
115 PLN02187 rooty/superroot1 96.7 0.03 6.6E-07 54.5 13.4 99 162-286 103-203 (462)
116 PRK07550 hypothetical protein; 96.7 0.028 6.1E-07 53.1 12.9 99 162-286 62-162 (386)
117 PRK09147 succinyldiaminopimela 96.7 0.025 5.5E-07 53.6 12.6 116 148-286 47-165 (396)
118 PRK05958 8-amino-7-oxononanoat 96.7 0.017 3.8E-07 54.0 11.2 81 171-286 84-164 (385)
119 PRK14807 histidinol-phosphate 96.7 0.027 5.9E-07 52.6 12.1 83 176-286 64-146 (351)
120 PRK02610 histidinol-phosphate 96.7 0.03 6.5E-07 52.8 12.5 93 167-286 66-163 (374)
121 PRK08363 alanine aminotransfer 96.6 0.02 4.3E-07 54.4 11.1 98 163-286 66-165 (398)
122 PRK08068 transaminase; Reviewe 96.6 0.047 1E-06 51.7 13.5 113 148-286 50-166 (389)
123 TIGR03540 DapC_direct LL-diami 96.6 0.047 1E-06 51.5 13.4 94 168-286 68-163 (383)
124 TIGR03799 NOD_PanD_pyr putativ 96.6 0.013 2.7E-07 58.1 9.6 130 5-157 10-143 (522)
125 PRK06348 aspartate aminotransf 96.6 0.043 9.3E-07 51.9 12.9 115 145-286 45-161 (384)
126 PRK00011 glyA serine hydroxyme 96.6 0.017 3.7E-07 55.2 10.1 91 167-286 67-163 (416)
127 KOG0630|consensus 96.5 0.011 2.5E-07 56.8 8.5 120 171-297 165-296 (838)
128 COG0436 Aspartate/tyrosine/aro 96.5 0.033 7.2E-07 53.1 11.8 114 148-286 46-162 (393)
129 KOG0628|consensus 96.5 0.007 1.5E-07 57.7 6.8 109 29-158 17-128 (511)
130 KOG2040|consensus 96.5 0.012 2.6E-07 58.4 8.5 101 166-288 577-678 (1001)
131 PRK15399 lysine decarboxylase 96.5 0.042 9.2E-07 56.0 12.8 83 177-288 201-293 (713)
132 PLN03026 histidinol-phosphate 96.5 0.018 3.9E-07 54.5 9.7 83 175-285 90-172 (380)
133 cd00610 OAT_like Acetyl ornith 96.5 0.028 6.1E-07 53.3 10.9 93 169-286 77-187 (413)
134 PRK09105 putative aminotransfe 96.4 0.017 3.7E-07 54.5 8.9 80 176-283 83-162 (370)
135 TIGR03538 DapC_gpp succinyldia 96.4 0.051 1.1E-06 51.5 12.2 117 147-286 45-164 (393)
136 PRK01533 histidinol-phosphate 96.4 0.016 3.6E-07 54.5 8.7 82 176-286 69-150 (366)
137 PLN02724 Molybdenum cofactor s 96.4 0.017 3.7E-07 60.2 9.5 127 133-284 36-179 (805)
138 PRK13238 tnaA tryptophanase/L- 96.4 0.038 8.2E-07 53.9 11.4 89 162-286 73-172 (460)
139 PRK15400 lysine decarboxylase 96.3 0.071 1.5E-06 54.4 13.2 83 177-288 201-293 (714)
140 PLN02450 1-aminocyclopropane-1 96.3 0.052 1.1E-06 53.0 12.1 101 168-292 87-190 (468)
141 COG1167 ARO8 Transcriptional r 96.3 0.09 2E-06 51.2 13.5 116 145-287 106-225 (459)
142 PLN02376 1-aminocyclopropane-1 96.3 0.054 1.2E-06 53.3 12.0 98 166-291 93-197 (496)
143 PRK03967 histidinol-phosphate 96.3 0.073 1.6E-06 49.4 12.2 79 176-284 60-138 (337)
144 PRK00950 histidinol-phosphate 96.2 0.025 5.5E-07 52.7 9.1 83 175-285 73-156 (361)
145 PRK15481 transcriptional regul 96.2 0.058 1.3E-06 51.8 11.7 87 170-286 124-210 (431)
146 PLN00143 tyrosine/nicotianamin 96.2 0.069 1.5E-06 51.1 12.0 112 149-286 55-169 (409)
147 PRK03317 histidinol-phosphate 96.1 0.066 1.4E-06 50.2 11.4 94 167-286 65-158 (368)
148 PRK07681 aspartate aminotransf 96.1 0.12 2.7E-06 49.0 13.4 113 148-286 50-165 (399)
149 PRK13393 5-aminolevulinate syn 96.1 0.059 1.3E-06 51.4 11.2 123 128-286 49-172 (406)
150 PRK03158 histidinol-phosphate 96.1 0.025 5.5E-07 52.7 8.3 82 176-286 69-150 (359)
151 PRK09257 aromatic amino acid a 96.1 0.1 2.2E-06 49.5 12.5 117 146-286 47-168 (396)
152 PRK06107 aspartate aminotransf 96.1 0.12 2.6E-06 49.2 12.9 112 148-285 51-164 (402)
153 PRK13392 5-aminolevulinate syn 96.0 0.075 1.6E-06 50.7 11.4 80 175-287 95-174 (410)
154 TIGR01437 selA_rel uncharacter 96.0 0.035 7.6E-07 52.3 9.0 96 171-288 45-149 (363)
155 cd00617 Tnase_like Tryptophana 96.0 0.09 2E-06 50.8 11.9 90 162-287 48-148 (431)
156 PRK08175 aminotransferase; Val 96.0 0.21 4.5E-06 47.4 14.3 100 161-286 61-160 (395)
157 TIGR01825 gly_Cac_T_rel pyrido 95.9 0.13 2.9E-06 48.2 12.5 86 168-288 75-160 (385)
158 PRK15029 arginine decarboxylas 95.9 0.15 3.3E-06 52.5 13.5 82 176-286 210-301 (755)
159 TIGR00858 bioF 8-amino-7-oxono 95.9 0.1 2.2E-06 48.3 11.2 79 173-286 63-141 (360)
160 PRK13355 bifunctional HTH-doma 95.9 0.1 2.3E-06 51.5 11.9 97 162-286 180-280 (517)
161 TIGR01264 tyr_amTase_E tyrosin 95.9 0.12 2.6E-06 49.1 11.9 112 148-286 53-167 (401)
162 PLN02607 1-aminocyclopropane-1 95.9 0.12 2.6E-06 50.2 12.0 102 168-293 96-200 (447)
163 PLN02414 glycine dehydrogenase 95.8 0.41 8.8E-06 50.9 16.6 142 101-270 75-226 (993)
164 PRK05937 8-amino-7-oxononanoat 95.8 0.14 3.1E-06 48.1 12.2 127 127-289 7-139 (370)
165 PRK09276 LL-diaminopimelate am 95.7 0.21 4.6E-06 47.0 13.0 92 169-285 71-164 (385)
166 PRK13578 ornithine decarboxyla 95.7 0.21 4.5E-06 51.2 13.4 82 177-287 180-272 (720)
167 PRK06290 aspartate aminotransf 95.7 0.22 4.8E-06 47.7 12.9 95 167-286 81-178 (410)
168 PRK09265 aminotransferase AlaT 95.6 0.14 3E-06 48.7 11.2 69 199-286 97-167 (404)
169 PRK08133 O-succinylhomoserine 95.6 0.12 2.6E-06 49.2 10.7 83 165-286 59-145 (390)
170 PRK02731 histidinol-phosphate 95.5 0.076 1.7E-06 49.6 8.8 82 175-285 71-152 (367)
171 PRK03321 putative aminotransfe 95.4 0.067 1.5E-06 49.8 8.3 84 175-286 61-144 (352)
172 PRK04635 histidinol-phosphate 95.4 0.076 1.7E-06 49.6 8.7 79 176-281 65-143 (354)
173 PRK09148 aminotransferase; Val 95.4 0.22 4.9E-06 47.4 12.0 97 163-285 64-160 (405)
174 PRK08637 hypothetical protein; 95.4 0.33 7.1E-06 46.0 12.9 69 199-286 71-141 (388)
175 TIGR01821 5aminolev_synth 5-am 95.4 0.19 4E-06 47.8 11.3 79 175-286 94-172 (402)
176 PRK07366 succinyldiaminopimela 95.4 0.39 8.5E-06 45.3 13.4 98 162-285 63-163 (388)
177 PTZ00376 aspartate aminotransf 95.3 0.29 6.4E-06 46.6 12.5 103 162-287 67-173 (404)
178 PRK09064 5-aminolevulinate syn 95.2 0.2 4.3E-06 47.7 10.9 78 176-286 96-173 (407)
179 PRK01278 argD acetylornithine 95.2 0.22 4.8E-06 47.1 11.1 37 174-221 76-112 (389)
180 TIGR00474 selA seryl-tRNA(sec) 95.1 1.7 3.8E-05 42.3 17.1 80 175-287 126-211 (454)
181 COG0156 BioF 7-keto-8-aminopel 95.1 0.21 4.6E-06 47.5 10.5 126 126-291 41-169 (388)
182 PRK07505 hypothetical protein; 95.1 0.23 5E-06 47.2 11.0 87 170-286 90-178 (402)
183 PRK06855 aminotransferase; Val 95.1 0.31 6.8E-06 47.0 12.0 96 163-285 69-167 (433)
184 PF02347 GDC-P: Glycine cleava 95.0 0.5 1.1E-05 45.6 12.8 156 92-276 31-194 (429)
185 PRK13034 serine hydroxymethylt 94.9 0.3 6.5E-06 46.9 11.3 92 166-286 69-166 (416)
186 PRK02936 argD acetylornithine 94.9 0.32 6.8E-06 45.7 11.2 41 169-220 69-109 (377)
187 cd00611 PSAT_like Phosphoserin 94.9 0.083 1.8E-06 49.5 7.2 94 157-275 27-124 (355)
188 PRK08153 histidinol-phosphate 94.9 0.11 2.4E-06 48.8 8.1 81 176-285 72-152 (369)
189 PRK04311 selenocysteine syntha 94.9 1.6 3.4E-05 42.7 16.1 85 169-287 126-216 (464)
190 PLN02822 serine palmitoyltrans 94.7 0.7 1.5E-05 45.3 13.3 84 170-288 153-236 (481)
191 PRK07908 hypothetical protein; 94.6 0.16 3.6E-06 47.2 8.4 76 175-281 62-137 (349)
192 TIGR01885 Orn_aminotrans ornit 94.5 0.53 1.2E-05 44.7 11.9 39 172-221 80-118 (401)
193 PRK04781 histidinol-phosphate 94.5 0.24 5.3E-06 46.5 9.3 83 175-284 63-148 (364)
194 TIGR03246 arg_catab_astC succi 94.5 0.8 1.7E-05 43.6 12.9 37 174-221 80-116 (397)
195 PRK08134 O-acetylhomoserine am 94.5 0.26 5.6E-06 47.7 9.6 84 164-286 61-148 (433)
196 TIGR03576 pyridox_MJ0158 pyrid 94.4 0.7 1.5E-05 43.3 12.2 114 111-264 7-122 (346)
197 TIGR00461 gcvP glycine dehydro 94.4 0.76 1.6E-05 48.5 13.3 138 102-268 40-185 (939)
198 PRK07568 aspartate aminotransf 94.3 0.54 1.2E-05 44.4 11.4 92 168-286 67-161 (397)
199 COG1103 Archaea-specific pyrid 94.3 0.43 9.3E-06 43.0 9.6 86 179-294 69-156 (382)
200 cd00614 CGS_like CGS_like: Cys 94.1 0.39 8.4E-06 45.3 9.9 83 165-286 38-124 (369)
201 TIGR01140 L_thr_O3P_dcar L-thr 94.1 0.25 5.3E-06 45.7 8.4 74 174-284 50-123 (330)
202 PRK14808 histidinol-phosphate 94.1 0.38 8.3E-06 44.6 9.6 78 168-278 57-134 (335)
203 TIGR01326 OAH_OAS_sulfhy OAH/O 94.0 0.27 5.9E-06 47.2 8.7 84 164-286 54-141 (418)
204 TIGR01325 O_suc_HS_sulf O-succ 93.9 0.53 1.1E-05 44.6 10.4 81 166-285 53-137 (380)
205 PLN02672 methionine S-methyltr 93.8 0.76 1.7E-05 49.2 12.1 90 172-286 735-826 (1082)
206 PRK05367 glycine dehydrogenase 93.8 0.93 2E-05 48.2 12.7 145 93-271 43-200 (954)
207 PRK05839 hypothetical protein; 93.7 1.5 3.2E-05 41.3 13.0 80 169-272 62-141 (374)
208 TIGR02618 tyr_phenol_ly tyrosi 93.7 0.37 8.1E-06 46.6 8.9 89 162-286 66-165 (450)
209 PRK06425 histidinol-phosphate 93.6 0.59 1.3E-05 43.2 9.8 76 175-281 44-119 (332)
210 PRK02627 acetylornithine amino 93.4 1.1 2.4E-05 42.2 11.5 40 170-220 80-119 (396)
211 TIGR03801 asp_4_decarbox aspar 93.3 1.4 3.1E-05 43.7 12.4 118 146-285 110-238 (521)
212 PRK07865 N-succinyldiaminopime 93.1 3.9 8.4E-05 38.1 14.6 106 162-292 57-182 (364)
213 KOG0259|consensus 93.0 0.82 1.8E-05 43.1 9.5 100 163-289 99-201 (447)
214 PLN02242 methionine gamma-lyas 92.9 0.42 9E-06 46.0 7.9 83 165-286 74-161 (418)
215 PLN02955 8-amino-7-oxononanoat 92.8 1.7 3.8E-05 42.5 12.0 95 171-288 147-247 (476)
216 PRK03715 argD acetylornithine 92.8 1.3 2.8E-05 42.3 11.0 41 169-220 76-116 (395)
217 PRK08248 O-acetylhomoserine am 92.7 0.93 2E-05 43.8 10.1 85 163-286 60-148 (431)
218 PRK05613 O-acetylhomoserine am 92.7 0.93 2E-05 43.9 10.1 85 165-287 67-155 (437)
219 PRK03244 argD acetylornithine 92.7 0.85 1.8E-05 43.2 9.7 39 174-220 88-126 (398)
220 PRK05093 argD bifunctional N-s 92.7 2.4 5.2E-05 40.3 12.8 37 174-221 85-121 (403)
221 PRK07050 cystathionine beta-ly 92.6 0.56 1.2E-05 44.7 8.4 70 166-269 64-137 (394)
222 PRK07590 L,L-diaminopimelate a 92.6 2.8 6.2E-05 39.8 13.2 84 161-271 70-164 (409)
223 TIGR01328 met_gam_lyase methio 92.5 0.53 1.1E-05 44.8 8.1 83 165-286 57-143 (391)
224 PRK06234 methionine gamma-lyas 92.5 0.74 1.6E-05 44.0 9.0 83 165-286 62-148 (400)
225 PRK05994 O-acetylhomoserine am 92.4 1.4 3.1E-05 42.4 10.9 82 166-286 62-147 (427)
226 PRK13237 tyrosine phenol-lyase 92.4 0.76 1.7E-05 44.7 8.8 89 162-286 73-172 (460)
227 TIGR00707 argD acetylornithine 92.3 2.4 5.1E-05 39.6 12.1 39 171-220 69-107 (379)
228 PRK05968 hypothetical protein; 92.3 1.6 3.5E-05 41.5 11.0 80 166-284 62-145 (389)
229 PRK00854 rocD ornithine--oxo-a 92.2 2.3 5E-05 40.3 12.0 35 176-221 88-122 (401)
230 PRK06702 O-acetylhomoserine am 92.2 0.63 1.4E-05 45.1 8.1 85 165-287 59-147 (432)
231 PRK07503 methionine gamma-lyas 92.1 0.85 1.8E-05 43.6 8.9 83 165-286 63-149 (403)
232 PRK07392 threonine-phosphate d 92.1 2.5 5.4E-05 39.4 11.9 78 176-282 62-144 (360)
233 PRK08117 4-aminobutyrate amino 92.0 2.5 5.5E-05 40.7 12.1 41 171-220 86-126 (433)
234 PRK08574 cystathionine gamma-s 92.0 0.87 1.9E-05 43.3 8.8 82 164-285 50-134 (385)
235 PRK09275 aspartate aminotransf 91.7 2.2 4.8E-05 42.4 11.4 117 146-285 116-239 (527)
236 PRK06358 threonine-phosphate d 91.6 1.1 2.4E-05 41.8 9.0 79 175-284 58-138 (354)
237 PLN03226 serine hydroxymethylt 91.3 2.2 4.7E-05 41.9 10.9 95 167-286 76-181 (475)
238 TIGR01329 cysta_beta_ly_E cyst 91.2 0.97 2.1E-05 42.8 8.2 75 175-285 51-129 (378)
239 PLN03227 serine palmitoyltrans 91.2 2.6 5.6E-05 40.1 11.1 80 168-286 44-123 (392)
240 PRK14809 histidinol-phosphate 91.2 1.5 3.2E-05 40.8 9.3 81 176-284 70-152 (357)
241 TIGR02617 tnaA_trp_ase tryptop 91.2 0.86 1.9E-05 44.1 7.7 101 161-287 68-179 (467)
242 TIGR03539 DapC_actino succinyl 91.2 4.2 9.2E-05 37.8 12.4 101 166-291 55-175 (357)
243 PRK08247 cystathionine gamma-s 91.1 1.3 2.8E-05 41.7 8.9 81 166-286 51-135 (366)
244 PRK08249 cystathionine gamma-s 91.1 0.84 1.8E-05 43.6 7.6 84 164-286 61-148 (398)
245 PRK08354 putative aminotransfe 91.0 1.5 3.3E-05 40.1 9.0 72 176-285 45-116 (311)
246 PRK07504 O-succinylhomoserine 90.9 2.2 4.7E-05 40.8 10.3 82 166-286 64-149 (398)
247 PRK07810 O-succinylhomoserine 90.8 1.2 2.5E-05 42.7 8.3 85 163-286 66-154 (403)
248 PRK04073 rocD ornithine--oxo-a 90.4 3.6 7.8E-05 39.0 11.3 37 173-220 84-120 (396)
249 PRK03080 phosphoserine aminotr 90.4 1.4 3E-05 41.7 8.4 89 166-281 43-135 (378)
250 PRK12403 putative aminotransfe 90.0 3.9 8.4E-05 39.9 11.3 43 170-221 97-139 (460)
251 PTZ00125 ornithine aminotransf 89.8 3 6.6E-05 39.3 10.2 37 174-221 76-112 (400)
252 PRK08056 threonine-phosphate d 89.7 2 4.4E-05 40.0 8.9 79 175-284 59-139 (356)
253 TIGR03372 putres_am_tran putre 89.4 9.6 0.00021 37.0 13.5 43 170-221 116-158 (442)
254 KOG0258|consensus 89.4 13 0.00028 35.4 13.5 109 159-294 105-216 (475)
255 PRK04260 acetylornithine amino 88.7 5 0.00011 37.6 10.8 46 200-261 87-132 (375)
256 PRK12381 bifunctional succinyl 88.5 8.4 0.00018 36.7 12.3 37 174-221 84-120 (406)
257 PF05889 SLA_LP_auto_ag: Solub 88.3 1.2 2.7E-05 42.2 6.2 91 172-287 57-151 (389)
258 PRK05939 hypothetical protein; 88.2 2.8 6E-05 40.1 8.7 83 164-285 44-129 (397)
259 COG0001 HemL Glutamate-1-semia 87.8 3.4 7.3E-05 39.8 8.8 43 169-221 91-133 (432)
260 PRK06767 methionine gamma-lyas 87.6 5.5 0.00012 37.8 10.3 82 165-285 59-144 (386)
261 PF00464 SHMT: Serine hydroxym 87.5 2.3 5E-05 40.7 7.6 99 166-288 61-169 (399)
262 COG0403 GcvP Glycine cleavage 87.2 10 0.00023 36.4 11.6 131 107-270 55-198 (450)
263 PRK07812 O-acetylhomoserine am 87.2 5.2 0.00011 38.8 10.0 83 165-285 67-153 (436)
264 PLN02624 ornithine-delta-amino 86.8 10 0.00022 37.2 11.9 39 172-221 118-156 (474)
265 PRK11522 putrescine--2-oxoglut 86.6 12 0.00027 36.4 12.4 43 170-221 123-165 (459)
266 PRK04013 argD acetylornithine/ 86.6 7.5 0.00016 36.7 10.5 34 176-220 71-104 (364)
267 PF12897 Aminotran_MocR: Alani 86.4 2.4 5.1E-05 40.3 6.8 95 175-287 73-170 (425)
268 PRK08776 cystathionine gamma-s 86.1 4.2 9.2E-05 38.9 8.7 82 165-285 58-143 (405)
269 PRK07046 aminotransferase; Val 85.2 1.7 3.6E-05 42.4 5.5 41 169-220 113-153 (453)
270 PRK07811 cystathionine gamma-s 85.2 4.5 9.8E-05 38.4 8.4 83 165-286 59-145 (388)
271 KOG0257|consensus 85.1 22 0.00048 34.0 12.6 118 145-287 46-172 (420)
272 KOG0256|consensus 84.3 7.3 0.00016 37.2 8.9 102 168-293 122-226 (471)
273 PRK05964 adenosylmethionine--8 84.3 8.5 0.00018 36.9 9.9 43 170-221 84-126 (423)
274 COG0112 GlyA Glycine/serine hy 84.0 1.7 3.7E-05 41.2 4.7 100 163-288 64-166 (413)
275 PRK08064 cystathionine beta-ly 84.0 6.5 0.00014 37.4 8.9 83 164-286 51-137 (390)
276 PRK05664 threonine-phosphate d 84.0 16 0.00035 33.6 11.4 85 175-291 53-157 (330)
277 COG0075 Serine-pyruvate aminot 83.9 10 0.00022 36.1 9.9 97 164-287 31-129 (383)
278 COG0079 HisC Histidinol-phosph 83.7 11 0.00025 35.4 10.3 82 176-286 62-144 (356)
279 PRK08045 cystathionine gamma-s 83.7 5.5 0.00012 37.9 8.2 81 166-285 51-135 (386)
280 PRK12389 glutamate-1-semialdeh 83.2 15 0.00032 35.4 11.1 41 170-220 92-132 (428)
281 PRK06917 hypothetical protein; 83.0 7.4 0.00016 37.8 9.0 43 170-221 73-115 (447)
282 TIGR01364 serC_1 phosphoserine 82.9 5.8 0.00013 37.1 8.0 89 167-281 33-126 (349)
283 TIGR01324 cysta_beta_ly_B cyst 82.7 7.3 0.00016 36.9 8.7 39 164-217 47-85 (377)
284 PRK05965 hypothetical protein; 82.5 4.1 8.9E-05 39.7 7.0 43 170-221 89-131 (459)
285 COG1982 LdcC Arginine/lysine/o 82.4 32 0.00069 34.4 13.0 83 177-288 76-164 (557)
286 PLN02271 serine hydroxymethylt 82.2 7.6 0.00016 38.9 8.6 95 166-285 189-295 (586)
287 PRK06084 O-acetylhomoserine am 81.9 7.8 0.00017 37.4 8.6 83 165-286 56-142 (425)
288 TIGR00709 dat 2,4-diaminobutyr 81.7 35 0.00076 33.0 13.1 45 170-220 81-125 (442)
289 TIGR00713 hemL glutamate-1-sem 81.7 39 0.00085 32.2 13.4 38 173-220 90-127 (423)
290 TIGR01365 serC_2 phosphoserine 81.7 7 0.00015 37.1 8.0 93 162-281 30-126 (374)
291 PRK07678 aminotransferase; Val 81.6 5.5 0.00012 38.7 7.5 41 171-221 89-129 (451)
292 PRK07049 methionine gamma-lyas 81.2 17 0.00037 35.1 10.7 84 166-287 82-169 (427)
293 PRK08861 cystathionine gamma-s 80.7 8.4 0.00018 36.7 8.3 39 164-217 50-88 (388)
294 PRK07671 cystathionine beta-ly 80.5 7.8 0.00017 36.7 8.0 82 165-286 48-133 (377)
295 PRK07481 hypothetical protein; 80.3 5.9 0.00013 38.5 7.2 44 170-221 85-128 (449)
296 TIGR02080 O_succ_thio_ly O-suc 80.0 8.8 0.00019 36.4 8.2 38 165-217 49-86 (382)
297 PRK08114 cystathionine beta-ly 79.4 8.5 0.00018 36.8 7.8 85 163-286 58-146 (395)
298 PRK00062 glutamate-1-semialdeh 79.1 7 0.00015 37.6 7.3 41 170-220 89-129 (426)
299 PRK08360 4-aminobutyrate amino 78.8 6.8 0.00015 38.0 7.1 41 171-220 84-124 (443)
300 PRK07480 putative aminotransfe 78.8 6.5 0.00014 38.3 7.0 43 170-221 93-135 (456)
301 TIGR03542 DAPAT_plant LL-diami 78.8 19 0.00041 34.1 10.1 75 167-271 75-160 (402)
302 PRK05355 3-phosphoserine/phosp 78.7 5.1 0.00011 37.7 6.1 95 166-285 43-139 (360)
303 KOG0634|consensus 78.3 11 0.00024 36.2 8.0 69 198-286 125-193 (472)
304 PRK07036 hypothetical protein; 78.1 7.1 0.00015 38.1 7.1 43 170-221 94-136 (466)
305 COG0161 BioA Adenosylmethionin 78.0 11 0.00025 36.5 8.2 68 143-223 64-131 (449)
306 PRK13580 serine hydroxymethylt 77.8 6.1 0.00013 38.9 6.4 112 165-286 89-218 (493)
307 PRK09028 cystathionine beta-ly 77.4 18 0.0004 34.5 9.5 37 166-217 60-96 (394)
308 PLN02509 cystathionine beta-ly 77.0 21 0.00045 35.0 9.9 76 174-285 136-215 (464)
309 PRK06105 aminotransferase; Pro 76.7 8.1 0.00018 37.7 7.0 42 170-220 91-132 (460)
310 PLN02397 aspartate transaminas 75.9 76 0.0016 30.4 14.9 45 242-286 144-190 (423)
311 PRK04612 argD acetylornithine 75.8 9.6 0.00021 36.5 7.1 41 171-221 82-122 (408)
312 PRK06918 4-aminobutyrate amino 75.6 10 0.00023 36.7 7.4 43 170-220 96-138 (451)
313 PLN02760 4-aminobutyrate:pyruv 75.6 24 0.00051 34.9 10.0 74 170-261 132-205 (504)
314 PRK06176 cystathionine gamma-s 75.5 12 0.00026 35.4 7.7 83 164-286 47-133 (380)
315 PLN02482 glutamate-1-semialdeh 75.5 9.9 0.00021 37.3 7.2 42 169-220 137-178 (474)
316 PRK06943 adenosylmethionine--8 75.5 19 0.00041 35.0 9.2 42 171-221 97-138 (453)
317 PRK07482 hypothetical protein; 75.5 9.2 0.0002 37.3 7.0 43 170-221 93-135 (461)
318 TIGR00699 GABAtrns_euk 4-amino 75.4 11 0.00025 36.8 7.6 46 167-221 101-146 (464)
319 PRK06959 putative threonine-ph 75.0 16 0.00034 33.9 8.2 89 174-291 56-163 (339)
320 PRK06149 hypothetical protein; 74.7 25 0.00053 37.8 10.5 40 172-220 625-664 (972)
321 PRK05769 4-aminobutyrate amino 74.4 12 0.00026 36.3 7.5 43 170-220 96-138 (441)
322 PRK06916 adenosylmethionine--8 74.3 11 0.00024 36.8 7.2 43 170-221 98-140 (460)
323 COG4992 ArgD Ornithine/acetylo 74.3 12 0.00027 35.7 7.2 123 142-288 61-185 (404)
324 TIGR01274 ACC_deam 1-aminocycl 74.0 20 0.00043 33.3 8.6 77 199-291 67-151 (337)
325 PRK07030 adenosylmethionine--8 73.9 11 0.00023 37.0 7.0 43 170-221 89-131 (466)
326 PRK09440 avtA valine--pyruvate 73.3 42 0.00091 31.8 10.9 65 145-216 47-116 (416)
327 PLN00144 acetylornithine trans 72.7 12 0.00025 35.5 6.8 40 171-221 57-96 (382)
328 PRK13360 omega amino acid--pyr 72.6 14 0.00029 35.9 7.4 42 171-221 89-130 (442)
329 PRK09792 4-aminobutyrate trans 72.5 13 0.00028 35.7 7.2 43 170-220 82-124 (421)
330 PRK05639 4-aminobutyrate amino 71.9 17 0.00036 35.5 7.8 40 172-220 97-136 (457)
331 PRK06434 cystathionine gamma-l 71.8 13 0.00029 35.3 7.0 76 162-271 59-138 (384)
332 PRK00615 glutamate-1-semialdeh 70.7 8.6 0.00019 37.2 5.5 42 170-220 92-133 (433)
333 PRK08593 4-aminobutyrate amino 70.5 16 0.00034 35.4 7.3 43 170-220 84-126 (445)
334 PRK06082 4-aminobutyrate amino 70.4 14 0.00031 36.0 7.0 42 170-220 112-153 (459)
335 PRK07986 adenosylmethionine--8 69.8 16 0.00035 35.2 7.2 42 170-220 85-126 (428)
336 PRK05630 adenosylmethionine--8 69.7 16 0.00036 35.1 7.2 42 171-221 83-124 (422)
337 PRK06062 hypothetical protein; 69.6 16 0.00035 35.5 7.1 42 170-220 94-135 (451)
338 PRK07483 hypothetical protein; 69.5 17 0.00037 35.3 7.3 42 171-221 73-114 (443)
339 PRK09221 beta alanine--pyruvat 69.1 16 0.00035 35.4 7.1 42 171-221 92-133 (445)
340 PRK05967 cystathionine beta-ly 69.0 23 0.00051 33.8 8.0 71 165-269 62-136 (395)
341 PRK12462 phosphoserine aminotr 68.4 23 0.0005 33.5 7.7 72 135-213 6-84 (364)
342 PRK06209 glutamate-1-semialdeh 68.2 11 0.00023 36.4 5.6 41 170-220 87-127 (431)
343 PRK06777 4-aminobutyrate amino 67.5 15 0.00033 35.2 6.5 40 173-220 85-124 (421)
344 PRK06058 4-aminobutyrate amino 67.1 19 0.0004 34.9 7.0 42 171-220 99-140 (443)
345 KOG1404|consensus 66.8 4.7 0.0001 38.3 2.6 23 199-221 111-133 (442)
346 PRK08297 L-lysine aminotransfe 66.2 24 0.00052 34.2 7.5 23 199-221 112-134 (443)
347 PRK12566 glycine dehydrogenase 65.9 97 0.0021 33.2 12.2 118 102-255 55-183 (954)
348 PRK06541 hypothetical protein; 65.8 21 0.00045 34.9 7.0 42 171-221 95-136 (460)
349 PF00202 Aminotran_3: Aminotra 65.2 35 0.00075 31.7 8.2 41 170-219 58-98 (339)
350 PRK06173 adenosylmethionine--8 64.2 25 0.00054 34.0 7.2 42 171-221 87-128 (429)
351 PRK07495 4-aminobutyrate amino 63.0 27 0.00059 33.6 7.2 42 171-220 83-124 (425)
352 KOG1357|consensus 63.0 31 0.00067 33.5 7.3 127 128-291 140-267 (519)
353 PRK06148 hypothetical protein; 62.2 24 0.00051 38.1 7.2 42 170-220 662-703 (1013)
354 PRK08742 adenosylmethionine--8 61.5 31 0.00066 33.8 7.4 48 170-221 106-153 (472)
355 COG0160 GabT 4-aminobutyrate a 61.4 1.1E+02 0.0024 29.8 11.0 23 199-221 119-141 (447)
356 PRK08088 4-aminobutyrate amino 61.1 72 0.0016 30.5 9.8 41 172-220 85-125 (425)
357 KOG1401|consensus 60.4 15 0.00032 35.1 4.7 25 199-223 118-142 (433)
358 PRK06931 diaminobutyrate--2-ox 60.4 30 0.00066 33.7 7.1 44 170-220 100-144 (459)
359 TIGR00508 bioA adenosylmethion 60.2 30 0.00065 33.3 7.0 40 173-221 90-129 (427)
360 TIGR00700 GABAtrnsam 4-aminobu 60.1 30 0.00065 33.1 7.0 40 173-220 78-117 (420)
361 PLN02452 phosphoserine transam 59.9 41 0.0009 31.7 7.7 76 133-215 7-89 (365)
362 cd06449 ACCD Aminocyclopropane 59.4 59 0.0013 29.6 8.5 58 199-271 53-118 (307)
363 PRK07582 cystathionine gamma-l 59.4 43 0.00094 31.4 7.8 71 165-270 49-123 (366)
364 TIGR03251 LAT_fam L-lysine 6-t 59.1 38 0.00083 32.6 7.5 23 199-221 105-127 (431)
365 PRK06460 hypothetical protein; 59.0 52 0.0011 31.0 8.3 75 162-270 40-118 (376)
366 PRK06938 diaminobutyrate--2-ox 58.1 1.3E+02 0.0028 29.3 11.1 21 200-220 129-150 (464)
367 KOG1403|consensus 57.8 7.5 0.00016 35.8 2.2 23 199-221 104-126 (452)
368 PRK09264 diaminobutyrate--2-ox 57.7 33 0.00071 33.0 6.8 45 170-220 81-126 (425)
369 PRK03910 D-cysteine desulfhydr 57.7 73 0.0016 29.4 8.9 57 199-270 65-129 (331)
370 COG1168 MalY Bifunctional PLP- 56.7 1.5E+02 0.0032 28.2 10.6 90 172-287 65-157 (388)
371 TIGR03679 arCOG00187 arCOG0018 56.2 1.1E+02 0.0023 26.7 9.2 43 250-292 45-87 (218)
372 COG2515 Acd 1-aminocyclopropan 54.8 58 0.0013 30.0 7.4 83 199-297 65-151 (323)
373 PF06506 PrpR_N: Propionate ca 53.4 31 0.00067 28.8 5.2 53 238-295 77-129 (176)
374 TIGR01275 ACC_deam_rel pyridox 53.1 78 0.0017 28.8 8.2 56 199-269 57-113 (311)
375 TIGR03811 tyr_de_CO2_Ent tyros 50.9 1.3E+02 0.0029 30.5 10.0 119 17-158 14-138 (608)
376 TIGR02407 ectoine_ectB diamino 50.4 48 0.001 31.7 6.6 45 170-220 77-122 (412)
377 PRK14045 1-aminocyclopropane-1 49.8 1.3E+02 0.0027 27.9 9.2 58 200-272 72-130 (329)
378 CHL00133 psbV photosystem II c 48.6 39 0.00085 28.2 4.9 56 15-70 78-144 (163)
379 COG3945 Uncharacterized conser 48.0 25 0.00055 29.7 3.6 36 3-42 25-60 (189)
380 PLN00061 photosystem II protei 47.8 84 0.0018 25.7 6.4 68 4-87 66-134 (150)
381 COG2747 FlgM Negative regulato 46.6 25 0.00054 26.5 3.1 29 3-35 64-92 (93)
382 cd01991 Asn_Synthase_B_C The C 46.4 1.5E+02 0.0033 25.9 8.9 58 198-270 17-78 (269)
383 cd01994 Alpha_ANH_like_IV This 46.0 1.4E+02 0.0031 25.4 8.2 77 200-291 3-88 (194)
384 TIGR01366 serC_3 phosphoserine 45.4 80 0.0017 29.5 7.2 45 164-216 34-79 (361)
385 PLN02994 1-aminocyclopropane-1 43.7 55 0.0012 26.8 5.1 44 167-217 92-137 (153)
386 COG1932 SerC Phosphoserine ami 42.2 87 0.0019 29.6 6.6 64 143-213 16-85 (365)
387 PF02662 FlpD: Methyl-viologen 42.2 85 0.0018 24.7 5.8 24 263-286 28-51 (124)
388 smart00394 RIIa RIIalpha, Regu 41.1 17 0.00036 22.3 1.2 24 21-44 14-37 (38)
389 COG2102 Predicted ATPases of P 40.3 80 0.0017 27.7 5.7 76 200-290 4-88 (223)
390 PF02197 RIIa: Regulatory subu 39.4 26 0.00056 21.6 1.9 24 21-44 14-37 (38)
391 TIGR03044 PS_II_psb27 photosys 39.0 1.1E+02 0.0024 24.6 5.9 67 3-87 46-113 (135)
392 PRK12390 1-aminocyclopropane-1 38.8 1.5E+02 0.0032 27.5 7.8 57 199-270 68-132 (337)
393 PRK13011 formyltetrahydrofolat 38.1 2.6E+02 0.0057 25.4 9.1 85 170-272 64-148 (286)
394 PF01053 Cys_Met_Meta_PP: Cys/ 37.7 1.9E+02 0.0041 27.5 8.4 40 163-217 51-90 (386)
395 TIGR01460 HAD-SF-IIA Haloacid 36.3 2.9E+02 0.0062 24.0 9.4 33 172-212 43-75 (236)
396 PF12728 HTH_17: Helix-turn-he 36.1 28 0.00061 22.4 1.8 36 251-286 2-49 (51)
397 cd02976 NrdH NrdH-redoxin (Nrd 34.6 1.4E+02 0.0029 19.7 6.4 52 241-297 2-55 (73)
398 PLN02974 adenosylmethionine-8- 34.3 1.3E+02 0.0028 31.8 7.2 23 199-221 429-451 (817)
399 cd05017 SIS_PGI_PMI_1 The memb 34.0 2.1E+02 0.0046 21.8 7.8 65 200-284 49-113 (119)
400 PF04273 DUF442: Putative phos 33.8 1.1E+02 0.0024 23.6 5.1 44 252-297 48-91 (110)
401 cd06007 R3H_DEXH_helicase R3H 33.8 96 0.0021 21.1 4.2 41 149-189 5-45 (59)
402 PRK13010 purU formyltetrahydro 33.3 3.4E+02 0.0073 24.8 9.0 83 171-271 69-151 (289)
403 PF12725 DUF3810: Protein of u 33.0 4E+02 0.0086 24.6 10.0 29 55-83 91-119 (318)
404 PRK10638 glutaredoxin 3; Provi 31.4 1.9E+02 0.0041 20.4 6.3 52 240-296 3-56 (83)
405 TIGR00290 MJ0570_dom MJ0570-re 31.3 2.2E+02 0.0048 24.9 7.2 71 200-286 4-83 (223)
406 PF03932 CutC: CutC family; I 31.3 1.9E+02 0.0041 25.0 6.6 90 111-218 71-161 (201)
407 COG0521 MoaB Molybdopterin bio 31.2 69 0.0015 26.9 3.8 10 199-208 69-78 (169)
408 PF02594 DUF167: Uncharacteris 30.9 53 0.0011 23.7 2.7 28 171-207 40-67 (77)
409 COG2117 Predicted subunit of t 30.9 3E+02 0.0064 23.2 7.3 70 200-292 4-76 (198)
410 TIGR01138 cysM cysteine syntha 30.2 2.4E+02 0.0051 25.5 7.5 52 201-270 63-114 (290)
411 PF00282 Pyridoxal_deC: Pyrido 30.1 55 0.0012 31.0 3.4 87 52-159 7-95 (373)
412 PF01408 GFO_IDH_MocA: Oxidore 30.0 96 0.0021 23.3 4.3 51 242-296 67-117 (120)
413 PF06956 RtcR: Regulator of RN 29.2 1.5E+02 0.0032 25.2 5.3 63 107-169 80-142 (183)
414 TIGR01764 excise DNA binding d 28.3 49 0.0011 20.4 2.0 35 251-285 2-48 (49)
415 COG4930 Predicted ATP-dependen 28.1 41 0.00088 32.5 2.1 82 3-84 355-464 (683)
416 cd01040 globin Globins are hem 27.4 1.3E+02 0.0028 23.1 4.7 66 15-80 50-118 (140)
417 COG1908 FrhD Coenzyme F420-red 27.1 1.2E+02 0.0026 24.1 4.1 44 240-286 2-52 (132)
418 PLN02331 phosphoribosylglycina 26.9 2.8E+02 0.006 24.0 6.9 72 200-286 3-76 (207)
419 PLN02356 phosphateglycerate ki 26.8 2.2E+02 0.0047 27.6 6.8 53 199-269 104-158 (423)
420 COG3844 Kynureninase [Amino ac 26.7 78 0.0017 29.7 3.6 87 171-288 76-167 (407)
421 TIGR00289 conserved hypothetic 26.5 2.3E+02 0.0049 24.9 6.4 64 200-271 4-68 (222)
422 TIGR01536 asn_synth_AEB aspara 26.0 6.1E+02 0.013 24.5 10.3 61 198-271 255-319 (467)
423 PRK12821 aspartyl/glutamyl-tRN 25.7 5.8E+02 0.013 25.0 9.3 59 58-117 404-466 (477)
424 PF00036 EF-hand_1: EF hand; 25.4 57 0.0012 18.6 1.7 20 267-286 9-28 (29)
425 PRK11572 copper homeostasis pr 25.2 3.6E+02 0.0077 24.2 7.4 91 111-219 72-163 (248)
426 cd00640 Trp-synth-beta_II Tryp 24.9 4.5E+02 0.0098 22.6 9.7 31 240-270 75-105 (244)
427 COG5173 SEC6 Exocyst complex s 24.7 1.7E+02 0.0037 29.4 5.6 53 28-82 341-395 (742)
428 KOG2790|consensus 24.6 1.7E+02 0.0036 27.1 5.2 55 136-190 10-71 (370)
429 PF10273 WGG: Pre-rRNA-process 24.4 2.8E+02 0.0061 20.1 6.2 31 5-39 16-46 (82)
430 PLN03013 cysteine synthase 24.4 3.6E+02 0.0077 26.2 7.8 52 201-270 179-230 (429)
431 PF13202 EF-hand_5: EF hand; P 23.4 42 0.0009 18.4 0.8 17 267-283 8-24 (25)
432 PF02775 TPP_enzyme_C: Thiamin 23.3 2.1E+02 0.0047 22.7 5.4 44 248-297 108-151 (153)
433 PRK08638 threonine dehydratase 23.1 5.6E+02 0.012 23.7 8.7 51 200-268 78-128 (333)
434 CHL00067 rps2 ribosomal protei 22.9 5.2E+02 0.011 22.7 11.1 54 238-292 161-229 (230)
435 TIGR02189 GlrX-like_plant Glut 22.8 3.2E+02 0.007 20.2 6.2 55 239-296 8-65 (99)
436 PRK06027 purU formyltetrahydro 22.3 5.9E+02 0.013 23.1 8.6 84 170-271 64-147 (286)
437 PF01301 Glyco_hydro_35: Glyco 22.3 1.3E+02 0.0027 27.9 4.2 56 239-294 6-79 (319)
438 PLN02828 formyltetrahydrofolat 22.2 3.9E+02 0.0085 24.1 7.2 58 199-271 73-133 (268)
439 PF13124 DUF3963: Protein of u 22.1 59 0.0013 19.9 1.3 12 31-42 7-18 (40)
440 PRK08576 hypothetical protein; 22.0 6.8E+02 0.015 24.4 9.2 69 169-266 218-292 (438)
441 KOG2423|consensus 21.9 79 0.0017 30.5 2.7 27 271-297 431-457 (572)
442 TIGR02039 CysD sulfate adenyly 21.7 4.6E+02 0.0099 24.1 7.6 56 200-269 23-84 (294)
443 PRK05253 sulfate adenylyltrans 21.7 4.6E+02 0.0099 24.1 7.7 77 169-269 9-92 (301)
444 TIGR03239 GarL 2-dehydro-3-deo 21.4 4.8E+02 0.01 23.2 7.6 52 244-296 16-67 (249)
445 PRK01310 hypothetical protein; 21.3 88 0.0019 24.0 2.5 32 167-207 48-79 (104)
446 cd02640 R3H_NRF R3H domain of 21.2 2.2E+02 0.0049 19.4 4.2 39 150-188 6-45 (60)
447 KOG1402|consensus 21.1 2.5E+02 0.0054 26.5 5.7 35 178-223 108-142 (427)
448 PF13405 EF-hand_6: EF-hand do 20.8 71 0.0015 18.1 1.5 19 268-286 10-28 (31)
449 PRK08198 threonine dehydratase 20.8 7.2E+02 0.016 23.5 9.4 30 240-269 95-124 (404)
450 PRK11761 cysM cysteine synthas 20.7 6.3E+02 0.014 22.8 9.4 52 201-270 67-118 (296)
451 TIGR03045 PS_II_C550 cytochrom 20.6 1.9E+02 0.0042 24.0 4.5 24 45-68 116-141 (159)
452 PRK10558 alpha-dehydro-beta-de 20.5 4.9E+02 0.011 23.2 7.5 52 244-296 23-74 (256)
453 KOG0633|consensus 20.4 78 0.0017 28.8 2.2 37 249-287 122-158 (375)
454 PRK05090 hypothetical protein; 20.3 95 0.0021 23.4 2.4 29 170-207 45-73 (95)
455 cd03060 GST_N_Omega_like GST_N 20.2 2.8E+02 0.0061 18.6 4.8 50 242-297 2-53 (71)
No 1
>KOG0628|consensus
Probab=100.00 E-value=1.5e-56 Score=412.21 Aligned_cols=239 Identities=55% Similarity=1.060 Sum_probs=227.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q psy1678 17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL 96 (297)
Q Consensus 17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l 96 (297)
||++|||++||+|||||+|||++|++|||+|+|+||+ +
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGY------------------------------------------l 38 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGY------------------------------------------L 38 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcch------------------------------------------h
Confidence 8999999999999999999999999999999999996 2
Q ss_pred hccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHH
Q psy1678 97 RPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM 176 (297)
Q Consensus 97 ~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v 176 (297)
++.++...|++|.++++|++++...+.|+++||+||+|++|++++.+++++++|+|...++.-+++|.+||+.|++|..+
T Consensus 39 ~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~iv 118 (511)
T KOG0628|consen 39 RDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIV 118 (511)
T ss_pred hhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHH
Confidence 35566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678 177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA 256 (297)
Q Consensus 177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka 256 (297)
++||++|+|+|+.|++.+.+.+||++.+.+|||+|.||++||...+.+.++..+.+.++....++++|||+++|+|++||
T Consensus 119 mDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka 198 (511)
T KOG0628|consen 119 MDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKA 198 (511)
T ss_pred HHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHh
Confidence 99999999999999888888999999999999999999999999999888777777777777999999999999999999
Q ss_pred HHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 257 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 257 a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
|-+.|+++|.+|+|.++.|+.+.|+++|++|+++|++||+|
T Consensus 199 ~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v 239 (511)
T KOG0628|consen 199 CLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV 239 (511)
T ss_pred HhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE
Confidence 99999999999999999999999999999999999999986
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=8.8e-49 Score=381.22 Aligned_cols=231 Identities=44% Similarity=0.880 Sum_probs=212.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCc
Q psy1678 57 IMGDVNEFKDFAKAMVDYVGNYLENIRD----RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSP 132 (297)
Q Consensus 57 ~p~~~e~f~~~l~~v~d~i~~~~~~~~~----~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p 132 (297)
.++++++|++.++++++.+.+|++++.+ +||.++..|+++++.++..+|++|.+++++++++.+.+.++.++|+||
T Consensus 52 ~~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP 131 (539)
T PLN02590 52 KPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSP 131 (539)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCC
Confidence 4589999999999999999999998877 799999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHH
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV 212 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~ 212 (297)
|||||++++++++++++|||++++|+|++.|+.||++++||++|++||++|+|+|+.++ ..+.++|+||||||||||+
T Consensus 132 ~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~--~~~~~gG~~~sGgSeAnl~ 209 (539)
T PLN02590 132 SYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFL--STGNGGGVIQGTGCEAVLV 209 (539)
T ss_pred CeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccc--cCCCCceEEcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654 1234689999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCC--CCCCcCHHHHHHHHHHH
Q psy1678 213 ALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEED 287 (297)
Q Consensus 213 Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d--~~~~md~~~L~~~i~~~ 287 (297)
||++||++.+++.+.. ..+++++|||+++|||+.|||+++|+ +|++||+| ++++||+++|+++|++|
T Consensus 210 al~aAR~~~~~~~g~~--------~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d 281 (539)
T PLN02590 210 VVLAARDRILKKVGKT--------LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD 281 (539)
T ss_pred HHHHHHHHHHhhhccc--------CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence 9999999876542211 14789999999999999999999999 69999999 46899999999999999
Q ss_pred HHCCCccEEc
Q psy1678 288 LKKGKIPFYI 297 (297)
Q Consensus 288 ~~~G~~Pf~v 297 (297)
+++|++||+|
T Consensus 282 ~~~g~~P~~V 291 (539)
T PLN02590 282 LAKGFIPFFI 291 (539)
T ss_pred HhcCCCcEEE
Confidence 9999999987
No 3
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=4.2e-47 Score=368.31 Aligned_cols=230 Identities=44% Similarity=0.875 Sum_probs=212.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccccc
Q psy1678 58 MGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAY 137 (297)
Q Consensus 58 p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~ 137 (297)
.+++++|++.++++++.+.+|+++..++||.++..|+++++.++..+|++|.+.+++++++.+.+.+++++|+||+||||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~ 88 (490)
T PLN02880 9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAY 88 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 138 FPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 138 ~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
++++++++++++|++++.+|+|+.+|+.||++++||++|++|+++|+|+|+.+. ..+.++|+||+|||+||++||++|
T Consensus 89 ~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~--~~~~~gG~~tsggs~anl~al~~A 166 (490)
T PLN02880 89 YPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAA 166 (490)
T ss_pred ccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhh--cCCCCceEEcCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998653 123468999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCC--CCCcCHHHHHHHHHHHHHCCC
Q psy1678 218 KAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 218 R~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~ 292 (297)
|++.+++.+..+ .++++||+|+++|||+.|||+++|+ +|+.||+|+ +++||+++|+++|++++++|+
T Consensus 167 R~~~~~~~g~~~--------~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~ 238 (490)
T PLN02880 167 RDRVLRKVGKNA--------LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGL 238 (490)
T ss_pred HHHHHHHhcccc--------cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCC
Confidence 998765432111 3678999999999999999999999 599999985 789999999999999999999
Q ss_pred ccEEc
Q psy1678 293 IPFYI 297 (297)
Q Consensus 293 ~Pf~v 297 (297)
+||+|
T Consensus 239 ~p~~v 243 (490)
T PLN02880 239 IPFFL 243 (490)
T ss_pred ccEEE
Confidence 99986
No 4
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=2.5e-43 Score=331.55 Aligned_cols=198 Identities=38% Similarity=0.722 Sum_probs=174.6
Q ss_pred hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHH
Q psy1678 93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTEL 172 (297)
Q Consensus 93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~i 172 (297)
|+++++.++..+|++|.+.+++++++.+.+.++..+|+||+|+||+++++++++++++++++++|+|+..|+.+|++++|
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~ 80 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI 80 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS 252 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S 252 (297)
|++|++|+++|+|+|+++.. .+.++|+||+|||+||++|+++||++..++.+..+.. + .+++++|+|+++|||
T Consensus 81 E~~vi~~l~~l~g~~~~~~~--~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~--~---~~~~~i~~s~~aH~S 153 (373)
T PF00282_consen 81 EREVIRWLADLFGLPESFTF--SKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVE--E---IPKPVIYVSEQAHYS 153 (373)
T ss_dssp HHHHHHHHHHHTTGSGGTTS--TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTT--H---CSSEEEEEETTS-TH
T ss_pred hHHHHHHHHHHhCCcccccc--cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccc--c---ccccccccccccccH
Confidence 99999999999999965421 1237899999999999999999999988776555432 1 468999999999999
Q ss_pred HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 253 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
+.|||+++|+.+++||+|++|+||+++|+++|+++.++|++||+|
T Consensus 154 ~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~v 198 (373)
T PF00282_consen 154 IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAV 198 (373)
T ss_dssp HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceee
Confidence 999999999999999999999999999999999999999999875
No 5
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=1.1e-39 Score=320.64 Aligned_cols=236 Identities=18% Similarity=0.222 Sum_probs=194.3
Q ss_pred hccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy1678 49 RFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTH 128 (297)
Q Consensus 49 v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~ 128 (297)
+...+-.+.-+|.+.|++.+..+++.+.+|+.+..... .+..++++++. ..+.+...+.+++++++.+.+.+++++
T Consensus 4 ~~a~flgpk~en~~~~~~~~~~~~~~~~~~r~~~~p~d-~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~ 79 (608)
T TIGR03811 4 LNALFIGDKAENGQLYKDLLNKLVDEHLGWRQNYMPQD-KPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVP 79 (608)
T ss_pred hhheeecCcccCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCC
Confidence 34455566778999999999999999999998842110 02345665544 344555568999999999999999999
Q ss_pred CCCc-cccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 129 WHSP-KFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 129 ~~~p-~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
|+|| ||+||+++++++++++|+++++++|+|+..|+.||+++.||++|++|||+|+||++ ++|+||||||
T Consensus 80 ~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~---------~~G~~TsGGT 150 (608)
T TIGR03811 80 WHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN---------GWGHIVADGS 150 (608)
T ss_pred CCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC---------CCeEEeCChH
Confidence 9999 99999999999999999999999999999999999999999999999999999986 4799999999
Q ss_pred HHHHHHHHHHHHHHH-----HHHH------hhCCCC----------------------C----Cc-CCCCce-EEEecCC
Q psy1678 208 EATLVALLGAKAKTM-----QRVK------EAHPDW----------------------K----DS-DIIANL-VGYCSDQ 248 (297)
Q Consensus 208 ~anl~Al~~AR~~~~-----~~~~------~~~~~~----------------------~----~~-~~~~~~-~i~~s~~ 248 (297)
+||++|||+||+.+. .+.+ ..+|+. . .+ ....++ ++++|++
T Consensus 151 ~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~ 230 (608)
T TIGR03811 151 LANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQT 230 (608)
T ss_pred HHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCC
Confidence 999999999999741 1100 001110 0 00 012233 7999999
Q ss_pred CcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 249 AHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 249 aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
+|||+.|||+++|+ +++.||+|+++|||+++|+++|++++++|..||+|
T Consensus 231 aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~V 282 (608)
T TIGR03811 231 KHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGV 282 (608)
T ss_pred ccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 99999999999999 69999999999999999999999999999988875
No 6
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=1.5e-37 Score=302.65 Aligned_cols=229 Identities=16% Similarity=0.187 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhhhhccC-CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccC
Q psy1678 62 NEFKDFAKAMVDYVGNYLEN--IRDRRVLPTVEPGYLRPLI-PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYF 138 (297)
Q Consensus 62 e~f~~~l~~v~d~i~~~~~~--~~~~pv~~~~~p~~l~~~~-~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~ 138 (297)
..+.++++++.+.+++|+.+ ....++.+. ++..+ ...+|++|.+.+++++++.+.+.+++++|+||+||||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~ 96 (522)
T TIGR03799 22 STLGRIEQKISQNLAGFLQEHIVAIEKPLSE-----IEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHM 96 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccCCCchh-----hhhcccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEec
Confidence 56777888888888888887 333455443 33333 46899999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCc-cccc---cCCCCCCeEEcCChhHHHHHH
Q psy1678 139 PTA-NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK-EFLA---CSGGKGGGVIQGTASEATLVA 213 (297)
Q Consensus 139 ~s~-~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~-~~~~---~~~~~~~G~~tsGGT~anl~A 213 (297)
+++ +.....+++ +.+.+|+|+..|+.||++++||++|++|+++|+|.++ .++. .....++|+||||||+||++|
T Consensus 97 ~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~A 175 (522)
T TIGR03799 97 TSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITA 175 (522)
T ss_pred cCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHH
Confidence 996 344344677 6779999999999999999999999999999996432 2210 112346899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcC--------CCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHH
Q psy1678 214 LLGAKAKTMQRVKEAHPDWKDSD--------IIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEA 282 (297)
Q Consensus 214 l~~AR~~~~~~~~~~~~~~~~~~--------~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~ 282 (297)
|++||++.+...+. ..++...| ..++++||+|+.+|||+.|||+++|+ +++.||+|++|+||+++|++
T Consensus 176 l~~AR~~~~~~~~~-~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~ 254 (522)
T TIGR03799 176 LWVARNRLLKADGD-FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRD 254 (522)
T ss_pred HHHHHHHhcccccc-ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHH
Confidence 99999987643211 01111111 13578999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHCCCccEEc
Q psy1678 283 AIEEDLKKGKIPFYI 297 (297)
Q Consensus 283 ~i~~~~~~G~~Pf~v 297 (297)
+|++++++|..||+|
T Consensus 255 ~i~~~~~~g~~~~~v 269 (522)
T TIGR03799 255 KCAELAEQNIKPLAI 269 (522)
T ss_pred HHHHHHHCCCCcEEE
Confidence 999999999999976
No 7
>KOG0629|consensus
Probab=100.00 E-value=7.5e-38 Score=286.09 Aligned_cols=220 Identities=21% Similarity=0.333 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC
Q psy1678 64 FKDFAKAMVDYVGNYLENIRD--RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA 141 (297)
Q Consensus 64 f~~~l~~v~d~i~~~~~~~~~--~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~ 141 (297)
-+.++.++++.+++|....-+ ..|.++..|++|+..+...+|+++.+.++++.+.++.+..+ +.+.|||||+.+.++
T Consensus 33 te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~y~-vKTgHprffNQl~~g 111 (510)
T KOG0629|consen 33 TEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLKYS-VKTGHPRFFNQLSSG 111 (510)
T ss_pred hHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHHhh-hccCCCcchhhhccC
Confidence 378889999999999665444 48999999999999999999999999999999999987655 467999999999999
Q ss_pred CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 142 NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 142 ~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
-++.+++++|+++..|.|..+|+.+|+.+.||.+|+.-+.+++||+.+ ++|+|++||+.||+||+.+||.+.
T Consensus 112 lD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~--------~DgIf~pggsisn~Ya~~~Aryk~ 183 (510)
T KOG0629|consen 112 LDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG--------GDGIFAPGGSISNMYAMNCARYKN 183 (510)
T ss_pred CCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC--------CCceecCCchhHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999974 589999999999999999999998
Q ss_pred HHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 222 MQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
.++.+..|.. ..+++++|+|+++||||.|||+++|+ +|+.|++|++|+|++++||++|.+++++|.+||+|
T Consensus 184 ~Pe~K~~Gm~-----~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~v 257 (510)
T KOG0629|consen 184 FPEVKTKGMF-----ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFV 257 (510)
T ss_pred Cchhhhhhhh-----cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEE
Confidence 8876554431 25899999999999999999999997 89999999999999999999999999999999997
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=243.04 Aligned_cols=203 Identities=24% Similarity=0.269 Sum_probs=167.0
Q ss_pred HHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCCCccccccCCCCCCHHHHHHHHHHH
Q psy1678 76 GNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMP-GVTHWHSPKFHAYFPTANSYPAIVADILSD 154 (297)
Q Consensus 76 ~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~-~~~~~~~p~~~g~~~s~~~~~svl~d~l~~ 154 (297)
.++......+.+.+...|-+-.......+|+.|.+.++++.++...... ....+.||+++.|.++++.++.++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~ 84 (460)
T COG0076 5 IDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVS 84 (460)
T ss_pred HHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHH
Confidence 3333333333333333443333444568899999999999999998444 444555999999999999999999999999
Q ss_pred hccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy1678 155 SIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKD 234 (297)
Q Consensus 155 ~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~ 234 (297)
++|+|+..|+.+|+++++|++|++|+++|+|+|+. +.|+||+||||||++|+++||++.++.....+ .
T Consensus 85 ~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~--------~~G~~t~GgTean~lal~aar~~~~~~~~~~~--~-- 152 (460)
T COG0076 85 ALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE--------ASGTFTSGGTEANLLALLAARERWRKRALAES--G-- 152 (460)
T ss_pred HHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC--------CceEEEcChHHHHHHHHHHHHHHHHHHhhhcc--c--
Confidence 99999999999999999999999999999999865 57999999999999999999999875432211 0
Q ss_pred cCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHHHHHCC
Q psy1678 235 SDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 235 ~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~~~~~G 291 (297)
.....++||||+++|||+.|||+++|+.++.||+++ +++||+++|+++|++++..|
T Consensus 153 -~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g 209 (460)
T COG0076 153 -KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG 209 (460)
T ss_pred -ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc
Confidence 012355899999999999999999999999999998 89999999999999999887
No 9
>PLN02263 serine decarboxylase
Probab=99.96 E-value=1.6e-29 Score=241.30 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCH-HHHHHHHHHHhccccccccccCc---hhhHHHHHHHHHHHHHcCC
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSY-PAIVADILSDSIACIGFTWIASP---ACTELEVVMLDWLGKMLDL 186 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~-~svl~d~l~~~lN~n~~~~~~~p---~~~~iE~~v~~~l~~llg~ 186 (297)
.+++|+++.+.+.++..+ |+|| +...++ .+.+++++...+|+-+..|..+| .+++||++|++|+++|+|+
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~ 148 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI 148 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence 588999999998876543 9999 555555 79999999999999999999999 6899999999999999999
Q ss_pred CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEE
Q psy1678 187 PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRG 266 (297)
Q Consensus 187 ~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~ 266 (297)
|++. .+|+||||||||||+||++||++. ++.++|+|+++|||+.|||+++|+++++
T Consensus 149 p~~~-------~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa~llgi~~~~ 204 (470)
T PLN02263 149 EKNE-------YWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRMECVK 204 (470)
T ss_pred CCCC-------CeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHHHhcCCcceE
Confidence 8631 479999999999999999999963 2347999999999999999999999999
Q ss_pred eeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 267 LPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 267 Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
||+|++|+||+++|+++|+++. .+||+|
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~---~~P~iV 232 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANK---DKPAII 232 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCC---CCcEEE
Confidence 9999999999999999998754 468775
No 10
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.94 E-value=6.7e-26 Score=216.74 Aligned_cols=172 Identities=15% Similarity=0.124 Sum_probs=143.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHH
Q psy1678 101 PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWL 180 (297)
Q Consensus 101 ~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l 180 (297)
...||++|.+.+++++++...+.. .+..||+|++|+++++.+. +.+++..++|+|.+.|..+|..+++|+++++|+
T Consensus 14 ~~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~l 89 (431)
T TIGR01788 14 KYRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNML 89 (431)
T ss_pred cccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence 358999999999999999987543 3557899999999887765 589999999999889999999999999999999
Q ss_pred HHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc
Q psy1678 181 GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG 260 (297)
Q Consensus 181 ~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l 260 (297)
++++|+++. ....+|+|||||||||++|+++||++...+.+..+. ...+++||+|+++|+|+.|+++++
T Consensus 90 a~llg~~~~-----~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~------~~~~~~ii~s~~~H~sv~ka~~~l 158 (431)
T TIGR01788 90 ADLWHAPAK-----DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGK------PTDKPNLVMGSNVQVCWEKFARYF 158 (431)
T ss_pred HHHhCCCCC-----CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCcEEEEcCcchHHHHHHHHHc
Confidence 999999821 002578999999999999999999764333221111 123568999999999999999999
Q ss_pred CCceEEeeCCCC-CCcCHHHHHHHHHHH
Q psy1678 261 GVTIRGLPADDS-YKLRGDALEAAIEED 287 (297)
Q Consensus 261 g~~v~~Vp~d~~-~~md~~~L~~~i~~~ 287 (297)
|++++.||+|++ ++||+++|+++|+++
T Consensus 159 g~~v~~i~~d~~~~~vd~~~L~~~i~~~ 186 (431)
T TIGR01788 159 DVELREVPMDPGRYVIDPEQVVEAVDEN 186 (431)
T ss_pred CceeEEEecCCCceeeCHHHHHHHHhhC
Confidence 999999999986 699999999999764
No 11
>PLN03032 serine decarboxylase; Provisional
Probab=99.89 E-value=1.6e-22 Score=190.02 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCc---hhhHHHHHHHHHHHHHcCCC
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASP---ACTELEVVMLDWLGKMLDLP 187 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p---~~~~iE~~v~~~l~~llg~~ 187 (297)
..++++.+..++. -++..|.||........+++..++....|+.+..+..++ .+.++|+++++|+++|+|++
T Consensus 8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~ 82 (374)
T PLN03032 8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 82 (374)
T ss_pred HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence 4566777776654 244678899887765567777777776665444444433 68999999999999999998
Q ss_pred ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEe
Q psy1678 188 KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGL 267 (297)
Q Consensus 188 ~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~V 267 (297)
++. .+|+|||||||||++|+++||++. ++.++|+|+++|||+.||++++|+.++.|
T Consensus 83 ~~~-------~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V 138 (374)
T PLN03032 83 KDE-------YWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRMEAVKV 138 (374)
T ss_pred Ccc-------CCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHHcCCCCeEe
Confidence 642 379999999999999999999852 12378999999999999999999999999
Q ss_pred eCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 268 PADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 268 p~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
|+|++|+||+++|+++|+++. + .|++|
T Consensus 139 ~~d~~g~id~~~L~~~i~~~~--~-~~~lv 165 (374)
T PLN03032 139 PTLPSGEIDYDDLERALAKNR--D-KPAIL 165 (374)
T ss_pred eeCCCCcCcHHHHHHHHHHcC--C-CCEEE
Confidence 999999999999999998642 3 46554
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=99.88 E-value=4.9e-22 Score=187.58 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCc----hhhHHHHHHHHHHHHHcC
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASP----ACTELEVVMLDWLGKMLD 185 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p----~~~~iE~~v~~~l~~llg 185 (297)
..+.|+++...+. +||+++.+++... ...+.+.+++....|+.+ .|..++ .++.+|+++++|+++|+|
T Consensus 7 ~~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g 79 (380)
T PRK02769 7 DQKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFK 79 (380)
T ss_pred HHHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhC
Confidence 3556666666543 5677665554444 446888999998888644 555555 378999999999999999
Q ss_pred CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceE
Q psy1678 186 LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIR 265 (297)
Q Consensus 186 ~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~ 265 (297)
+++.. .+|+|||||||||++|+++||++. +..+||+|+++|||+.|+++++|++++
T Consensus 80 ~~~~~-------~~G~~TsGgTean~~a~~~ar~~~-----------------~~~~ii~s~~~H~Sv~ka~~~lg~~~~ 135 (380)
T PRK02769 80 IPFNE-------SWGYITNGGTEGNLYGCYLARELF-----------------PDGTLYYSKDTHYSVSKIARLLRIKSR 135 (380)
T ss_pred CCCCC-------CCEEEecChHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceehHHHHHHHcCCCCc
Confidence 98532 479999999999999999999852 123799999999999999999999999
Q ss_pred EeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 266 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 266 ~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
.||++++|+||+++|+++|+++ |..|++|
T Consensus 136 ~V~~~~~g~id~~~L~~~i~~~---~~~t~lv 164 (380)
T PRK02769 136 VITSLPNGEIDYDDLISKIKEN---KNQPPII 164 (380)
T ss_pred eeccCCCCcCcHHHHHHHHHhC---CCCcEEE
Confidence 9999999999999999999876 6566654
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.84 E-value=6.1e-20 Score=170.43 Aligned_cols=151 Identities=40% Similarity=0.622 Sum_probs=128.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHH
Q psy1678 134 FHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVA 213 (297)
Q Consensus 134 ~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~A 213 (297)
|+++++++++++++++|+++..+|+|...|..+|..+++|+++++|+++++|++.. ...|+||+|||+||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~-------~~~~~~t~ggt~a~~~a 73 (345)
T cd06450 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE-------DADGVFTSGGSESNLLA 73 (345)
T ss_pred CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC-------CCCEEEeCChhHHHHHH
Confidence 68888889999999999999999999999999999999999999999999999721 13699999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCc
Q psy1678 214 LLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKI 293 (297)
Q Consensus 214 l~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~ 293 (297)
+.++|++...+.+..+. ....+.+|++|+.+|+|+.+++.++|.+++.||+|+++++|+++|+++|.++.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~ 148 (345)
T cd06450 74 LLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLN 148 (345)
T ss_pred HHHHHHHhhhhhhcccc-----cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCC
Confidence 99998865443221110 0123568999999999999999999999999999999999999999999998888876
Q ss_pred cEE
Q psy1678 294 PFY 296 (297)
Q Consensus 294 Pf~ 296 (297)
|.+
T Consensus 149 ~~~ 151 (345)
T cd06450 149 PIM 151 (345)
T ss_pred cEE
Confidence 644
No 14
>KOG1383|consensus
Probab=99.67 E-value=2.3e-16 Score=147.12 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=134.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC-CCHHHHHHHHHHHhccc-cccccccCchhhHHHHHHHH
Q psy1678 101 PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA-NSYPAIVADILSDSIAC-IGFTWIASPACTELEVVMLD 178 (297)
Q Consensus 101 ~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~-n~~~~~~~p~~~~iE~~v~~ 178 (297)
..+||+.|.+.+++++.+.+...-+.. |.-.+..+-++.. +.. -.++...+|. |....+..|+.+.+|++|++
T Consensus 53 ~~~lP~~gl~~d~v~~~i~~~~~ld~~-~~~~~vS~~v~~~~~~~----~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vn 127 (491)
T KOG1383|consen 53 FFTLPSKGLPKDAVLELINDELMLDGN-PRLGLASGVVYWGEPEL----DKLIMEAYNKFNPLHPDEFPVVRKLEAECVN 127 (491)
T ss_pred eecCCCCCCCHHHHHHHHHHHhccCCC-cccCeeeEEEecCCcch----hhHHHHHHhhcCccCccccchhHHHHHHHHH
Confidence 368999999999999999998665554 5555555544443 233 3445555555 77899999999999999999
Q ss_pred HHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH
Q psy1678 179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL 258 (297)
Q Consensus 179 ~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~ 258 (297)
++|.||+.|+. .+|..|+|||||.+.+.+..|++....+ + +.++.++++...|.+++|+++
T Consensus 128 m~~~L~~~~~~--------~~g~~t~G~Ses~l~~~k~~~~~r~~~k---~--------I~~p~iv~~~~v~~a~eK~a~ 188 (491)
T KOG1383|consen 128 MIANLFNAPSD--------SCGCGTVGGSESGLAAKKSYRNRRKAQK---G--------IDKPNIVTPQNVHAAFEKAAR 188 (491)
T ss_pred HHHHHhcCCcc--------ccCccccccchHHHHHHHHHHHHHHhcc---C--------CCCccccchHHHHHHHHHHHh
Confidence 99999999954 5899999999999999999998765421 1 467788999999999999999
Q ss_pred hcCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678 259 LGGVTIRGLPAD-DSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 259 ~lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~ 288 (297)
++++.++.||+| .+++||+..+++.|++++
T Consensus 189 yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNt 219 (491)
T KOG1383|consen 189 YFEVELREVPLDEGDYRVDPGKVVRMIDENT 219 (491)
T ss_pred hEEEEEEeeeccccceEecHHHHHHHhccce
Confidence 999999999999 699999999999998865
No 15
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.49 E-value=6.2e-13 Score=124.62 Aligned_cols=150 Identities=21% Similarity=0.229 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCc
Q psy1678 109 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 188 (297)
Q Consensus 109 ~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~ 188 (297)
.+.+++|+.|++...++ ..+. |+++.+++++.+. ++ +.+...+..+.......|....++.++.+++++++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~ 76 (371)
T PRK13520 2 LSEEEILEELEEYRSED-LKYE--RILSSMCTEPHPI-AR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD 76 (371)
T ss_pred CCHHHHHHHHHHHHhcC-CCHH--HeeeeeecCchHH-HH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence 46789999999986664 4455 5899887766543 22 444444444333333346678888999999999999986
Q ss_pred cccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEee
Q psy1678 189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLP 268 (297)
Q Consensus 189 ~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp 268 (297)
. .++||+|||++|..++.++++... .++..|++++.+|+|+.++++..|++++.||
T Consensus 77 ~---------~~~~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~ 132 (371)
T PRK13520 77 A---------YGYITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADMLGVELRRAP 132 (371)
T ss_pred C---------CeEEecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHcCceEEEec
Confidence 3 589999999999999999876421 1223678899999999999999999999999
Q ss_pred CCCCCCcCHHHHHHHHHHH
Q psy1678 269 ADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 269 ~d~~~~md~~~L~~~i~~~ 287 (297)
++.++.+|+++|+++|+++
T Consensus 133 ~~~~~~~d~~~l~~~i~~~ 151 (371)
T PRK13520 133 LDDDYRVDVKAVEDLIDDN 151 (371)
T ss_pred CCCCCcCCHHHHHHHHhhC
Confidence 9999999999999999753
No 16
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.42 E-value=5.1e-12 Score=118.59 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678 110 TWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKE 189 (297)
Q Consensus 110 ~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~ 189 (297)
+.+++|+++.++ ..++++.+++|++..+.+.+.+... +.+..++..+.......|....++.++.+++++++|.++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 77 (373)
T TIGR03812 1 SEEEVLEELKEY-RSEDLKYSDGRILGSMCTNPHPIAV--KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA 77 (373)
T ss_pred CHHHHHHHHHHH-HhcCCCCCCCcEEEEEeCCchHHHH--HHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence 357899999995 4566677889998888877665432 2233333333222233466778899999999999999763
Q ss_pred ccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678 190 FLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA 269 (297)
Q Consensus 190 ~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~ 269 (297)
.+++++|||++|+.++.++++..... .+.-.|++++.+|+|+.++++..|++++.||+
T Consensus 78 ---------~~~~~~g~~~~~~~~~~~~~~~~~~~-------------~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 78 ---------YGYIVSGGTEANIQAVRAAKNLAREE-------------KRTPNIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred ---------CeEEeccHHHHHHHHHHHHHHHHhcc-------------CCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 58999999999999988776532110 12235778999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHH
Q psy1678 270 DDSYKLRGDALEAAIEED 287 (297)
Q Consensus 270 d~~~~md~~~L~~~i~~~ 287 (297)
++++.+|+++|+++|.+.
T Consensus 136 ~~~~~~d~~~l~~~l~~~ 153 (373)
T TIGR03812 136 DEDYTVDVKDVEDLIDDN 153 (373)
T ss_pred CCCCCcCHHHHHHHHhhC
Confidence 999999999999999753
No 17
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.38 E-value=2.2e-12 Score=120.05 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=99.1
Q ss_pred cccccCCCCCCHHHHHHHH---HHHhc-cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678 133 KFHAYFPTANSYPAIVADI---LSDSI-ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE 208 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~---l~~~l-N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~ 208 (297)
-|+.|-.+.+..+.++..| +...| |++. .+..+-.+..+=.+..+++++++|.++. .-+|||||||
T Consensus 3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~---------eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE---------EIIFTSGATE 72 (386)
T ss_pred ccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEecCCcH
Confidence 4676666665555544433 34443 5444 4444444444444689999999999874 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
||.+|++.+-.....+ .++-.|++|...|.|+...|+.+ |+.|..+|||++|++|++.|+++|+
T Consensus 73 snNlaI~g~~~a~~~~-------------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~ 139 (386)
T COG1104 73 SNNLAIKGAALAYRNA-------------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR 139 (386)
T ss_pred HHHHHHHhhHHhhhcc-------------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC
Confidence 9999999864432211 12236889999999999999999 9999999999999999999999998
Q ss_pred HHH
Q psy1678 286 EDL 288 (297)
Q Consensus 286 ~~~ 288 (297)
.++
T Consensus 140 ~~T 142 (386)
T COG1104 140 PDT 142 (386)
T ss_pred CCc
Confidence 653
No 18
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.34 E-value=1.5e-11 Score=118.76 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=116.3
Q ss_pred ChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHH------HHHHHHhcccccccccc
Q psy1678 92 EPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIV------ADILSDSIACIGFTWIA 165 (297)
Q Consensus 92 ~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl------~d~l~~~lN~n~~~~~~ 165 (297)
-|++++...+..+|+.+ +.+++++++.+....+.....|++++|.-..+...+..+ +++++. +|++.. +.
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~ 106 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EI 106 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--cc
Confidence 36777777777899976 999999999998765554445787877432221111111 344444 555333 33
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
++...+.+.+...|+++++|.+.. .+++|+|||++ +.++..|+... ++-.|++
T Consensus 107 ~~g~~~~~~e~~~~la~l~g~~~~---------~v~~~~g~t~~-~~~~~~a~~~~-----------------~g~~Vlv 159 (447)
T PRK00451 107 SQGTLQAIFEYQTMICELTGMDVA---------NASMYDGATAL-AEAALMAVRIT-----------------KRKKVLV 159 (447)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcc---------eEEecCcHHHH-HHHHHHHHHhc-----------------CCCEEEE
Confidence 566777788888999999999863 58899999984 55555554321 1225778
Q ss_pred cCCCcchHHHHHHh----cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~Kaa~~----lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++..|+|..+++.. .|++++.||+|++ ++|+++|+++|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~ 203 (447)
T PRK00451 160 SGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDD 203 (447)
T ss_pred eCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCC
Confidence 99999999998875 5899999999988 9999999999864
No 19
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.31 E-value=5.1e-11 Score=122.33 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhccccccccc-----cCchhhHHHHHHHHHHHH
Q psy1678 110 TWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACIGFTWI-----ASPACTELEVVMLDWLGK 182 (297)
Q Consensus 110 ~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n~~~~~-----~~p~~~~iE~~v~~~l~~ 182 (297)
+..++++.++..-.++.. ..+ +++..+ +.....+.+++...++.....+- .+.+..+++.+...|||+
T Consensus 467 sE~e~~r~~~~L~~kn~~-~~~----~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~e 541 (939)
T TIGR00461 467 SETEMLRYLHRLESKDLA-LNN----SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCS 541 (939)
T ss_pred CHHHHHHHHHHHHhcCCC-ccc----cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHH
Confidence 788999998887554432 222 222222 23334566777666655443333 344488999999999999
Q ss_pred HcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV 262 (297)
Q Consensus 183 llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~ 262 (297)
+.|++. .++..+||+++++++|+++|.+...+ | ..+|.+|++|+++|.+..+++...|+
T Consensus 542 ltGmd~----------~Sl~p~aGA~gE~agL~aiR~y~~~r----g-------e~~R~~vlip~saHgtnPasa~~~G~ 600 (939)
T TIGR00461 542 ITGFDA----------ISLQPNSGAQGEYAGLRVIRSYHESR----G-------ENHRNICLIPVSAHGTNPASAAMAGM 600 (939)
T ss_pred HHCCCC----------cccCCchHHHHHHHHHHHHHHHHHhc----C-------CCCCCEEEEEccccCcCHHHHHHCCC
Confidence 999994 58889999999999999999864211 1 12466899999999999999999999
Q ss_pred ceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 263 TIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 263 ~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++.||+|++|++|+++|+++|++
T Consensus 601 ~Vv~V~~d~~G~iDle~L~~~i~~ 624 (939)
T TIGR00461 601 QVVPVNCDQDGNIDLVDLKNKAEQ 624 (939)
T ss_pred EEEEeccCCCCCcCHHHHHHHHhh
Confidence 999999999999999999999975
No 20
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.21 E-value=4e-10 Score=117.16 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccc----c-ccCchhhHHHHHHHHHHHHH
Q psy1678 109 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFT----W-IASPACTELEVVMLDWLGKM 183 (297)
Q Consensus 109 ~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~----~-~~~p~~~~iE~~v~~~l~~l 183 (297)
.+..++++.+++.-.++..-..+.-++|. +.....+. .++....++..... . +.+.+..+++.+...|++++
T Consensus 478 ~sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~--~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~el 554 (954)
T PRK05367 478 HSETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAA--AEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEI 554 (954)
T ss_pred CCHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHH--HHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999886666543344445787 33332222 33333333332211 1 34455789999999999999
Q ss_pred cCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCc
Q psy1678 184 LDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVT 263 (297)
Q Consensus 184 lg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~ 263 (297)
+|++. .....+||+++|+.+|+++|.....+ | ..++.+|++|+.+|+|+.+++.++|++
T Consensus 555 tG~d~----------~sl~~~~ga~ge~agL~a~r~~~~~~----G-------~~~r~~vlis~~aH~snp~sa~~~G~~ 613 (954)
T PRK05367 555 TGYDA----------VSLQPNAGAQGEYAGLLAIRAYHESR----G-------EGHRDVCLIPSSAHGTNPASAVMAGMK 613 (954)
T ss_pred HCCCC----------EEECccHHHHHHHHHHHHHHHHhhcc----C-------CCCCCEEEEEchhhhhhHHHHHHCCCE
Confidence 99984 24446789999999999988753221 1 123557899999999999999999999
Q ss_pred eEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 264 IRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 264 v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++.||+|++|++|+++|+++|++
T Consensus 614 vv~v~~d~~G~iD~~~L~~~i~~ 636 (954)
T PRK05367 614 VVVVACDENGNIDLDDLRAKAEE 636 (954)
T ss_pred EEEECCCCCCCcCHHHHHHHHhc
Confidence 99999999999999999999975
No 21
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.15 E-value=2.4e-10 Score=109.72 Aligned_cols=149 Identities=14% Similarity=0.066 Sum_probs=105.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCC--------Ccc---------ccccCCC---CCCHHHHHHHHHHHhcccccc
Q psy1678 102 ETAPDTPDTWQEVMSDIERVIMPGVTHWH--------SPK---------FHAYFPT---ANSYPAIVADILSDSIACIGF 161 (297)
Q Consensus 102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~--------~p~---------~~g~~~s---~~~~~svl~d~l~~~lN~n~~ 161 (297)
..+|++|++.+.|..+|.+.-......|. .+| ++++.++ +.+.. +.. -
T Consensus 28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~----~~q--------~ 95 (444)
T TIGR03531 28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLV----APQ--------P 95 (444)
T ss_pred CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccccc----ccC--------c
Confidence 47999999999999988887555555554 222 2222222 11110 000 0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
....|+....++.+...|+++++|.+.. ..+++++||| ++++++|.++|.+.. ..+
T Consensus 96 ka~gss~~~~l~~~~e~~~~~~~G~~~~--------~~a~~v~~~Tg~al~laL~alr~~~~---------------~gd 152 (444)
T TIGR03531 96 KAAGSSLLYKLTNKLVKDFLKLLGLRSI--------KSAFVVPLATGMSLSLCLSALRHKRP---------------KAK 152 (444)
T ss_pred cccCccHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCHHHHHHHHHHHHcCCcCC---------------CCC
Confidence 1223556788999999999999999842 2488999999 899999988764210 134
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEeeC---CCCCCcCHHHHHHHHHH
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE 286 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L~~~i~~ 286 (297)
.+|+++ .+|+|+.||+.++|+.++.|++ +++++||+++|+++|.+
T Consensus 153 ~VI~p~-~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~ 200 (444)
T TIGR03531 153 YVIWPR-IDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE 200 (444)
T ss_pred EEEEEC-cChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence 566555 6799999999999999999995 46799999999999984
No 22
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.95 E-value=1.7e-08 Score=98.62 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC-CCHHHHHHHHHHHhcccccccc---ccCchhhHHHHHHH
Q psy1678 102 ETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA-NSYPAIVADILSDSIACIGFTW---IASPACTELEVVML 177 (297)
Q Consensus 102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~n~~~~---~~~p~~~~iE~~v~ 177 (297)
..+|+ .+..++++++.+....+..... .|.|.=.+. ..++.+...++......+-..| ..+.+..++..++.
T Consensus 44 ~~~~~--~se~~~~~~~~~l~~~n~~~~~--~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~ 119 (481)
T PRK04366 44 PELPE--VSELEVVRHYTRLSQKNYGVDT--GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQ 119 (481)
T ss_pred CCCCC--CCHHHHHHHHHHHHhcCCCCCc--ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHH
Confidence 45676 8999999999988665543212 344433222 2333443333333111233344 25666778889999
Q ss_pred HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH
Q psy1678 178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG 257 (297)
Q Consensus 178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa 257 (297)
+|+++++|++. ..++.++|+.++++++.++|.....+ | ..++..|++++..|.+..+++
T Consensus 120 ~~la~l~G~~~----------~~l~~~~GA~a~~~~l~~~r~~~~~~----G-------d~~~~~Vlv~~~~hp~~~~~~ 178 (481)
T PRK04366 120 EWLKEITGMDA----------VTLQPAAGAHGELTGLLMIRAYHEAR----G-------DTKRTEVIVPDSAHGTNPASA 178 (481)
T ss_pred HHHHHHhCCCc----------eEEEeCcHHHHHHHHHHHHHHHhhcc----C-------cCCCCEEEEcCCccHhHHHHH
Confidence 99999999974 36677888899999888776543211 1 013446888999999999999
Q ss_pred HhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 258 LLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 258 ~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
...|++++.||++++|++|+++|+++|.++
T Consensus 179 ~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~ 208 (481)
T PRK04366 179 AMAGFKVVEIPSNEDGLVDLEALKAAVGED 208 (481)
T ss_pred HHcCCEEEEeecCCCCCcCHHHHHhhcccC
Confidence 999999999999989999999999998654
No 23
>PLN02590 probable tyrosine decarboxylase
Probab=98.93 E-value=5.3e-09 Score=102.84 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=96.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhh----cchhhhhccc-----cCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1678 16 MGDVNEFKDFAKAMVDYVGNYLENIRD----RYVQLQRFSQ-----MGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRR 86 (297)
Q Consensus 16 ~~~~~~f~~~~~~~vd~i~~y~~~~~~----~~v~~~v~p~-----l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~p 86 (297)
.||+++||+.+++|||+|++|++++++ +||.|.++|+ ++...|..++.++++++++.+.+.+ .
T Consensus 53 ~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p--------~ 124 (539)
T PLN02590 53 PMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMP--------G 124 (539)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhc--------c
Confidence 399999999999999999999999998 7999999997 7888899999999999999888886 5
Q ss_pred CCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCC--CHHHHHHHHHHHhcccc
Q psy1678 87 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN--SYPAIVADILSDSIACI 159 (297)
Q Consensus 87 v~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~--~~~svl~d~l~~~lN~n 159 (297)
+.++..|.++ ..++.. .+...++.++.... ++ ...+.|..+|. ..+..+-+|++.+++-+
T Consensus 125 ~~~~~hP~f~-a~~~~~-----~~~~~~lgd~l~sa------~n-~~~~~~~~sPa~t~lE~~vi~wl~~l~glp 186 (539)
T PLN02590 125 ITHWQSPSYF-AYYASS-----TSVAGFLGEMLNAG------LS-VVGFTWLTSPAATELEIIVLDWLAKLLQLP 186 (539)
T ss_pred CCcCCCCCee-EeccCC-----CcHHHHHHHHHHHh------cc-cccCCcccCchhHHHHHHHHHHHHHHhCCC
Confidence 6667788877 444432 46677777765542 22 22455555553 56788899999999765
No 24
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.70 E-value=1.5e-07 Score=88.72 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=87.7
Q ss_pred ccccCCCCCCHHHHHHHH---HHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHH
Q psy1678 134 FHAYFPTANSYPAIVADI---LSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEAT 210 (297)
Q Consensus 134 ~~g~~~s~~~~~svl~d~---l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~an 210 (297)
||++-..++.+..++..+ +...+.+....+..++....+..++.+++++++|.+++ ..+||+|||+++
T Consensus 2 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~i~~t~~~t~a~ 72 (379)
T TIGR03402 2 YLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD---------EIIFTSGGTESD 72 (379)
T ss_pred cCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCcHHHHH
Confidence 555555555555543322 22221111112223344566667899999999998753 589999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 211 LVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 211 l~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.+++.+..... .++-+|+++...|+|+...... .|++++.||++++|.+|+++|++.|++
T Consensus 73 ~~al~~~~~~~----------------~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~ 135 (379)
T TIGR03402 73 NTAIKSALAAQ----------------PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD 135 (379)
T ss_pred HHHHHHHHHhc----------------CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 99998764321 0123677889999998766554 499999999999999999999999864
No 25
>KOG1549|consensus
Probab=98.69 E-value=9.7e-08 Score=89.81 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=98.9
Q ss_pred CCCCccccccCCCCCCHHHHHHHH---HHHhc-cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc
Q psy1678 128 HWHSPKFHAYFPTANSYPAIVADI---LSDSI-ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ 203 (297)
Q Consensus 128 ~~~~p~~~g~~~s~~~~~svl~d~---l~~~l-N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t 203 (297)
+-..|-|++....++.++.|+..+ +..++ |++.. .-..-.-..+|. ....+|+|+|.++. +.+||
T Consensus 40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~-aR~~VAklInAd~~---------dIiFt 108 (428)
T KOG1549|consen 40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEA-AREQVAKLINADPS---------DIVFT 108 (428)
T ss_pred CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHH-HHHHHHHHhCCCCC---------cEEEe
Confidence 335577899888888877766433 33333 33322 111222334775 78999999999875 69999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHH
Q psy1678 204 GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDAL 280 (297)
Q Consensus 204 sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L 280 (297)
+|+||||.++++.--... . + + .++ .|++..++|.|+.++++.+ |+.|+.||++.+|..|.+.|
T Consensus 109 s~ATEs~Nlvl~~v~~~~-~----------~-~-~~k-~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~ 174 (428)
T KOG1549|consen 109 SGATESNNLVLKGVARFF-G----------D-K-TKK-HIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKL 174 (428)
T ss_pred CCchHHHHHHHHHhhccc-c----------c-c-ccc-eEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHH
Confidence 999999999887632111 0 0 0 122 7889999999999999886 88999999999999999999
Q ss_pred HHHHHHHH
Q psy1678 281 EAAIEEDL 288 (297)
Q Consensus 281 ~~~i~~~~ 288 (297)
++.|+.++
T Consensus 175 ~~~i~~~T 182 (428)
T KOG1549|consen 175 REAIRSKT 182 (428)
T ss_pred HHhcCCCc
Confidence 99998754
No 26
>PLN02651 cysteine desulfurase
Probab=98.68 E-value=1.3e-07 Score=88.79 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=75.9
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
+.+..+-.++.+.+++++|.+++ ..+||+|||++|.+++..++..... +.-.|+++
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~---------~v~~t~~~t~a~~~~l~~~~~~~~~---------------~g~~vl~~ 94 (364)
T PLN02651 39 WESEDAVEKARAQVAALIGADPK---------EIIFTSGATESNNLAIKGVMHFYKD---------------KKKHVITT 94 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCHHHHHHHHHHHHHHhccC---------------CCCEEEEc
Confidence 44455566788999999998753 5899999999999999887553211 12357789
Q ss_pred CCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
...|+|+.+.... .|++++.||++++|.+|+++|+++|++
T Consensus 95 ~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 95 QTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred ccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 9999998776543 588999999999999999999999964
No 27
>PLN02880 tyrosine decarboxylase
Probab=98.62 E-value=1.8e-07 Score=91.56 Aligned_cols=123 Identities=13% Similarity=0.183 Sum_probs=91.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccc-----cCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy1678 16 MGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQ-----MGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPT 90 (297)
Q Consensus 16 ~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~-----l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~ 90 (297)
.||+++||+.+++|+|+|++|+++++++||.|.++|+ ++...|..++.++++++++.+.+.+ ...++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~--------~~~~~ 80 (490)
T PLN02880 9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILP--------GVTHW 80 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhc--------CCCCC
Confidence 4999999999999999999999999999999999996 7777888888999888888887776 45556
Q ss_pred CChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhcccc
Q psy1678 91 VEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACI 159 (297)
Q Consensus 91 ~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n 159 (297)
..|.++ ..++.. .....++.++.... ++ ...+.|..+| ...+..+-+|+..+++-+
T Consensus 81 ~hP~f~-~~~~~~-----~~~~~~lad~l~~~------~n-~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p 138 (490)
T PLN02880 81 QSPNYF-AYYPSN-----SSVAGFLGEMLSAG------LN-IVGFSWITSPAATELEMIVLDWLAKLLNLP 138 (490)
T ss_pred CCCCee-EeccCC-----CcHHHHHHHHHHHh------hc-cCCcccccCcccHHHHHHHHHHHHHHhCCC
Confidence 678777 444332 34557777765432 21 1133344344 356677888999888754
No 28
>PRK02948 cysteine desulfurase; Provisional
Probab=98.60 E-value=3.8e-07 Score=86.07 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=88.3
Q ss_pred ccccCCCCCCHHHHH---HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHH
Q psy1678 134 FHAYFPTANSYPAIV---ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEAT 210 (297)
Q Consensus 134 ~~g~~~s~~~~~svl---~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~an 210 (297)
||.+-.+++.+..++ .+++.....+....+..+.....+..++.+.+++++|.+++ ..+||+|||++|
T Consensus 3 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~i~~~~g~t~a~ 73 (381)
T PRK02948 3 YLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ---------GIYFTSGGTESN 73 (381)
T ss_pred eccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCcHHHHH
Confidence 444444444444443 23333332223334445555566667799999999998753 588999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH---HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 211 LVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 211 l~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa---~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
..++.+..+... .+.-+|+++...|+|+..+. +..|.+++.||++++|.+|+++|++.+++
T Consensus 74 ~~~~~~~~~~~~---------------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 74 YLAIQSLLNALP---------------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred HHHHHHHHHhcc---------------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 998877643210 11235778899999987765 44688999999999999999999998853
No 29
>PRK14012 cysteine desulfurase; Provisional
Probab=98.56 E-value=7.8e-07 Score=84.79 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+++++++|.+.+ ..+||+|||+++.+++.+....... +.-.|+++..+|+|+.
T Consensus 53 ~~r~~ia~~~g~~~~---------~v~~~~g~t~al~~~l~~l~~~~~~---------------~gd~Vi~~~~~~~s~~ 108 (404)
T PRK14012 53 IARNQIADLIGADPR---------EIVFTSGATESDNLAIKGAAHFYQK---------------KGKHIITSKTEHKAVL 108 (404)
T ss_pred HHHHHHHHHcCcCcC---------eEEEeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEEecCccHHHH
Confidence 466799999998753 5899999999999998876432111 1125778899999998
Q ss_pred HHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++.. .|++++.|++|++|.+|+++|+++|.+
T Consensus 109 ~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~ 143 (404)
T PRK14012 109 DTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD 143 (404)
T ss_pred HHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 77655 499999999999999999999999864
No 30
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.56 E-value=6.5e-07 Score=85.32 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=87.6
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcc---ccccc--cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678 132 PKFHAYFPTANSYPAIVADILSDSIA---CIGFT--WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA 206 (297)
Q Consensus 132 p~~~g~~~s~~~~~svl~d~l~~~lN---~n~~~--~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG 206 (297)
+.||++-.+++.+..++..+ ...+. .|... +..+-.....-.++.+.+++++|.+++ ..+||+||
T Consensus 4 ~~yld~aa~~~~~~~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~ 73 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKM-MPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR---------EIVFTSGA 73 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHH-HHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCH
Confidence 35777776666666654333 33331 12111 111111233444678899999998753 58999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
|+++..++.+.+.... .+.-.|+++...|+|+.+++.. .|++++.||++++|.+|+++|++.
T Consensus 74 t~a~~~~l~~l~~~~~---------------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 138 (402)
T TIGR02006 74 TESNNLAIKGIAHFYK---------------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAA 138 (402)
T ss_pred HHHHHHHHHHHHHhhc---------------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHh
Confidence 9999998877643211 1123577889999999887654 489999999999999999999998
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 139 l~~ 141 (402)
T TIGR02006 139 IRD 141 (402)
T ss_pred cCC
Confidence 854
No 31
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.53 E-value=9.7e-07 Score=82.44 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=74.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
.....+..++.+++++++|.+++ ..+||+|+|++|..++.+.+..... ..+..|+++
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~t~a~~~~l~~l~~~~~~--------------~g~~~vi~~ 94 (353)
T TIGR03235 38 HNAKKAVERARKQVAEALGADTE---------EVIFTSGATESNNLAILGLARAGEQ--------------KGKKHIITS 94 (353)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCHHHHHHHHHHHHHHhccc--------------CCCCeeeEc
Confidence 34455667799999999999753 5899999999999888765432100 122468889
Q ss_pred CCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
...|+|+..+.. ..|++++.||+++++.+|+++|++.+++
T Consensus 95 ~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (353)
T TIGR03235 95 AIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRP 137 (353)
T ss_pred ccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence 999999876654 3588999999999999999999998853
No 32
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.53 E-value=9.5e-07 Score=82.92 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=78.1
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.+..++....+..++.+++++++|.+.. ...++|+|||+++..++.+..... .+.-
T Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~a~~~~~~~l~~~~----------------~~g~ 89 (373)
T cd06453 34 VHELSARATDAYEAAREKVARFINAPSP--------DEIIFTRNTTEAINLVAYGLGRAN----------------KPGD 89 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCCHHHHHHHHHHHhhhcC----------------CCCC
Confidence 4555666677777899999999998722 258899999999888887753210 0122
Q ss_pred EEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.|+++..+|++. .+.++..|++++.||++.++++|+++|++.|.+
T Consensus 90 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 138 (373)
T cd06453 90 EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE 138 (373)
T ss_pred EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence 577889999985 556667899999999999999999999999865
No 33
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.39 E-value=5.8e-06 Score=85.30 Aligned_cols=156 Identities=11% Similarity=0.072 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCcccccc--CCCCCCHHHHHHHHHHHhcccccccc-ccCchhhHHHHHHHHHHHHH
Q psy1678 107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAY--FPTANSYPAIVADILSDSIACIGFTW-IASPACTELEVVMLDWLGKM 183 (297)
Q Consensus 107 ~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~--~~s~~~~~svl~d~l~~~lN~n~~~~-~~~p~~~~iE~~v~~~l~~l 183 (297)
.+.+..++++.++..-.++..-.++..|+|- |==++...-+.. ....+++...... +.+.+.-++=.+.-.|+|++
T Consensus 477 ~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~-s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eL 555 (954)
T PRK12566 477 AHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPI-TWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAI 555 (954)
T ss_pred cCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcc-cchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHH
Confidence 4578999999998876555432223334442 000111110111 1122333333332 44555444444455899999
Q ss_pred cCCCccccccCCCCCCeEEcC-ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678 184 LDLPKEFLACSGGKGGGVIQG-TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV 262 (297)
Q Consensus 184 lg~~~~~~~~~~~~~~G~~ts-GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~ 262 (297)
.|++. ..+.. +|+++++.++++.|.+...+ |. ..|-+|++|..+|.+..-++...|+
T Consensus 556 tGmd~-----------~Sl~p~sGA~gE~A~Lmair~yh~~~----Ge-------~~r~~vLIp~saHgtNpasa~~~Gi 613 (954)
T PRK12566 556 TGFDA-----------ICMQPNSGAQGEYAGLLAIRRYHRSR----GQ-------SQRDICLIPSSAHGTNPASAQMAGM 613 (954)
T ss_pred HCCCe-----------EeecCCchHHHHHHHHHHHHHHHHhc----CC-------CCCCEEEecccccccCHHHHHHCCC
Confidence 99985 24454 79999999999988754322 21 2345688899999888888888999
Q ss_pred ceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 263 TIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 263 ~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+|+.||+|++|.+|+++|+++|+
T Consensus 614 eVv~Vp~D~~G~iDle~L~a~I~ 636 (954)
T PRK12566 614 RVVIVECDPDGNVDLDDLKAKAA 636 (954)
T ss_pred EEEEeccCCCCCcCHHHHHHHhh
Confidence 99999999999999999999997
No 34
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.26 E-value=9e-06 Score=77.23 Aligned_cols=130 Identities=16% Similarity=0.109 Sum_probs=86.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc-----cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSI-----ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~l-----N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
.|+++-..++.+..++ +.+..++ |.+...+..++.....-.++...+++++|.++. ...+||+|+|
T Consensus 20 ~yld~~~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~--------~~v~~~~g~t 90 (403)
T TIGR01979 20 VYLDSAATSQKPQQVI-DAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD--------EEIVFTRGTT 90 (403)
T ss_pred EEEeCccccCCCHHHH-HHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHH
Confidence 3666665555555443 4443333 222222333333444444688999999999732 2589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
+++..++.+...... .+.-.|+++...|+|. .+++...|+.++.||++++|.+|+++|++.
T Consensus 91 ~~l~~~~~~~~~~~~---------------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~ 155 (403)
T TIGR01979 91 ESINLVAYSWGDSNL---------------KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKL 155 (403)
T ss_pred HHHHHHHHHhhhhcC---------------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHH
Confidence 998776665432111 1223677889999874 467778899999999999999999999998
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 156 i~~ 158 (403)
T TIGR01979 156 LTE 158 (403)
T ss_pred hcc
Confidence 864
No 35
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.23 E-value=4.1e-06 Score=78.62 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=81.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
....+|=.++-.||+++-|++.- -.=-.-|+..-+++|++.|.+...+ | ...|-+++++
T Consensus 105 qG~l~li~~Lq~~L~~ITG~Dav----------sLQP~AGAqGE~aGll~Ir~YHe~r----G-------~~~R~~~LIP 163 (496)
T COG1003 105 QGYLELIYELQEWLKEITGMDAV----------SLQPNAGAQGEYAGLLAIRAYHESR----G-------EGHRNICLIP 163 (496)
T ss_pred HHHHHHHHHHHHHHHHhcCCcee----------eccCCCCcchhhHHHHHHHHHHHHc----C-------CCcCcEEEee
Confidence 34556666788999999999862 1122467888999999999875432 2 1245678889
Q ss_pred CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHH
Q psy1678 247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 289 (297)
Q Consensus 247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~ 289 (297)
+.||-...-+|.+.|++|+.|+||++|.+|+++|++++.+.++
T Consensus 164 ~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~A 206 (496)
T COG1003 164 DSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLA 206 (496)
T ss_pred ccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhcccee
Confidence 9999999999999999999999999999999999999986543
No 36
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.23 E-value=1.8e-05 Score=75.14 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
.+..+.+++++|.++ .+||+|||++|..++.+.. . +.-.|+++..+|+|+
T Consensus 66 ~~l~~~lA~~~g~~~-----------~~~~~g~t~a~~~al~~l~----~---------------~gd~Vlv~~~~h~s~ 115 (387)
T PRK09331 66 ADFHEDLAEFLGMDE-----------ARVTHGAREGKFAVMHSLC----K---------------KGDYVVLDGLAHYTS 115 (387)
T ss_pred HHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHhc----C---------------CCCEEEECCCchHHH
Confidence 345567888889853 6789999999988877641 1 112577889999999
Q ss_pred HHHHHhcCCceEEeeC--CCCCCcCHHHHHHHHHHH
Q psy1678 254 ERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEED 287 (297)
Q Consensus 254 ~Kaa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~~ 287 (297)
..++...|++++.||+ ++++.+|+++|+++|++.
T Consensus 116 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 151 (387)
T PRK09331 116 YVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV 151 (387)
T ss_pred HHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence 9999999999999999 778999999999999764
No 37
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.19 E-value=1.8e-05 Score=73.76 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=73.8
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
.+|....+..++.+++++++|.++. ...++|+|||+++..++.+. .. ..+ .|+
T Consensus 26 ~~~~~~~~~~~~~~~la~~~g~~~~--------~~~~~~~~~t~al~~~~~~~----~~--------------~g~-~vl 78 (356)
T cd06451 26 RSPEFLALMDEILEGLRYVFQTENG--------LTFLLSGSGTGAMEAALSNL----LE--------------PGD-KVL 78 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC--------CEEEEecCcHHHHHHHHHHh----CC--------------CCC-EEE
Confidence 4566667777899999999999542 14788999999998887653 11 012 466
Q ss_pred ecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|++ +..+++..|.+++.||+|+++.+|+++|++.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 122 (356)
T cd06451 79 VGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ 122 (356)
T ss_pred EecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence 67778887 4677888999999999998899999999999975
No 38
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.15 E-value=2.7e-05 Score=73.58 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.+++ .+..+++.+|..+. ..-+||+|+|+++.+++.+.....+.+ ..+-.|+++...|
T Consensus 43 ~l~~-a~~~~~~~~~~~~~--------~~i~~t~g~teal~~~~~~~~~~~~~~-------------~~~~~vi~~~~e~ 100 (382)
T TIGR03403 43 AIAE-ALDKLYKGINARDL--------DDIIITSCATESNNWVLKGVYFDEILK-------------GGKNHIITTEVEH 100 (382)
T ss_pred HHHH-HHHHHHHHcCcCCC--------CeEEEeCCHHHHHHHHHHHHHHhhccc-------------CCCCEEEEcCCcc
Confidence 4444 55556667776321 258899999999998887653211100 1123577889999
Q ss_pred chHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 251 SSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 251 ~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+|+..+.. ..|++++.||++++|.+|++.|+++|.+
T Consensus 101 ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~ 139 (382)
T TIGR03403 101 PAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE 139 (382)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc
Confidence 99887754 4688999999999999999999998864
No 39
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.15 E-value=1.1e-05 Score=73.87 Aligned_cols=94 Identities=28% Similarity=0.382 Sum_probs=76.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|...|.+..+|. .+++++|.+. .+|+++||++|.+|+.+.-. +.-
T Consensus 24 ~Yg~D~~~~~l~~----~i~~l~g~e~-----------a~f~~sGT~An~~al~~~~~-------------------~~~ 69 (290)
T PF01212_consen 24 AYGEDPTTARLEE----RIAELFGKEA-----------ALFVPSGTMANQLALRAHLR-------------------PGE 69 (290)
T ss_dssp CTTSSHHHHHHHH----HHHHHHTSSE-----------EEEESSHHHHHHHHHHHHHH-------------------TTE
T ss_pred ccCCChhHHHHHH----HHHHHcCCCE-----------EEEeCCCChHHHHHHHHHHh-------------------cCC
Confidence 5888888888886 6678999975 68999999999999988631 123
Q ss_pred EEEecCCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLK 289 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~ 289 (297)
.++|.+.+|..+..... +.|.+++.||.+++|.||+++|++.+++.-.
T Consensus 70 ~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~ 120 (290)
T PF01212_consen 70 SVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA 120 (290)
T ss_dssp EEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG
T ss_pred ceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc
Confidence 57899999999987544 4789999999998899999999999987543
No 40
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.13 E-value=5.9e-05 Score=71.41 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=71.5
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
+....++..++.+++++++|.+.+ ..+|+++|+.+...++++++... + +.-.|++
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~---------~v~~~~~g~~~~~~~~~~~~~~~-------~---------~gd~Vl~ 113 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVA---------NASLQDEATAAAEAAGLAAIRAY-------H---------KRNKVLV 113 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcc---------ceeccCchHHHHHHHHHHHHhcc-------c---------CCCEEEE
Confidence 445567778899999999998743 35566656655555555554220 0 1225778
Q ss_pred cCCCcchHHHHHHhcC----CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVERAGLLGG----VTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg----~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++..|.+...++.++| .+++.||+++++.+|+++|+++|.+
T Consensus 114 ~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 158 (398)
T cd00613 114 PDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSE 158 (398)
T ss_pred cCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCC
Confidence 9999999999999888 8999999988889999999998854
No 41
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.12 E-value=1.9e-05 Score=75.33 Aligned_cols=130 Identities=13% Similarity=0.023 Sum_probs=87.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc-----cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSI-----ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~l-----N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
-||.+-.+++.+..++.. +..++ |.....+..++.+..+-.++.+.+++++|.++. ..-+||+|+|
T Consensus 25 iYld~a~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t 95 (406)
T PRK09295 25 AYLDSAASAQKPSQVIDA-EAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA--------EELVFVRGTT 95 (406)
T ss_pred EEEeCcccccCCHHHHHH-HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC--------CeEEEeCCHH
Confidence 588887776666665433 32222 222223333444555555688999999997321 1589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
+++..++.+.....+ .+.-.|++++..|+|. .+.++..|++++.||++++|.+|+++|+++
T Consensus 96 ~~l~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 160 (406)
T PRK09295 96 EGINLVANSWGNSNV---------------RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPAL 160 (406)
T ss_pred HHHHHHHHHhhhhcC---------------CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHh
Confidence 998877655322111 1122577888888764 556777899999999999999999999998
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 161 i~~ 163 (406)
T PRK09295 161 FDE 163 (406)
T ss_pred cCC
Confidence 854
No 42
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.10 E-value=2.9e-05 Score=73.78 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=86.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhccc---cc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSIAC---IG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
-|+.+-..++.+..+ .+.+..+++. |. ..+..++.....-.++.+.+++++|.++. ..-+||+|+|
T Consensus 18 iyld~a~~~~~p~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~t~g~t 88 (398)
T TIGR03392 18 VYLDSAATALKPQAV-IDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA--------ENIVWTRGTT 88 (398)
T ss_pred EEeeCccccCCCHHH-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCChH
Confidence 477777666655554 3444444322 21 12222333344445688999999998521 1588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
+++..++.+.... . + .+.-.|++++..|+| +.+.++..|++++.||++.++.+|+++|+++
T Consensus 89 ~~l~~~~~~~~~~---~-------~-----~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~ 153 (398)
T TIGR03392 89 ESINLVAQSYARP---R-------L-----QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPEL 153 (398)
T ss_pred HHHHHHHHHhhhc---c-------C-----CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHH
Confidence 9988877654211 0 0 112257788999987 4566788899999999999999999999999
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 154 i~~ 156 (398)
T TIGR03392 154 LTP 156 (398)
T ss_pred hcc
Confidence 864
No 43
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.09 E-value=1.4e-05 Score=83.52 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh----HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS----EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT----~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
.+..++=.++-+|+++++|++ .-+||+++| +++++++.+..+. .|. ..|-+
T Consensus 564 ~g~~~~~~~~r~~la~i~g~~-----------~v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd-------~~r~~ 618 (993)
T PLN02414 564 QGYQEMFEDLGDLLCEITGFD-----------SFSLQPNAGAAGEYAGLMVIRAYHLS-------RGD-------HHRNV 618 (993)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-----------eEEEcCCCcHHHHHHHHHHHHHHHhc-------cCC-------CCCCE
Confidence 344556667999999999994 388998888 8888888776221 011 13457
Q ss_pred EEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|++|..+|.|+.+.+.+.|++|+.||+|++|.+|+++|+++|++
T Consensus 619 vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~ 662 (993)
T PLN02414 619 CIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA 662 (993)
T ss_pred EEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999985
No 44
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.06 E-value=2.4e-05 Score=74.31 Aligned_cols=130 Identities=13% Similarity=0.025 Sum_probs=86.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhccc---cc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSIAC---IG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
.||.+-..++.+..++. .+..++.. |. ..+..+......-.++.+.+++++|.++. ..-+||+|+|
T Consensus 21 ~yld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~~~~~t 91 (401)
T PRK10874 21 VYLDSAATALKPQAVIE-ATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA--------KNIVWTRGTT 91 (401)
T ss_pred EEEeCCcccCCCHHHHH-HHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCHH
Confidence 47777776666555543 33333322 21 12222333445555688999999998321 2588899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
+++..++.+.....+ .+.-.|++++..|+| +.+.++..|++++.||++.++.+|+++|++.
T Consensus 92 ~~i~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~ 156 (401)
T PRK10874 92 ESINLVAQSYARPRL---------------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPEL 156 (401)
T ss_pred HHHHHHHHHhhhccC---------------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHh
Confidence 998777655311000 112257788999976 4567788899999999999999999999999
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 157 i~~ 159 (401)
T PRK10874 157 ITP 159 (401)
T ss_pred cCc
Confidence 864
No 45
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.02 E-value=6.7e-05 Score=70.33 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
..+.+++++|.+ ..++|+|||+++..++.+.. . +.-.|+++..+|++..+
T Consensus 49 l~~~la~~~g~~-----------~i~~~~g~t~al~~~l~~~~----~---------------~gd~Vl~~~~~~~~~~~ 98 (361)
T cd06452 49 FHHDLAEFLGMD-----------EARVTPGAREGKFAVMHSLC----E---------------KGDWVVVDGLAHYTSYV 98 (361)
T ss_pred HHHHHHHHcCCc-----------eEEEeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcchHHHH
Confidence 445678888983 37899999999988776531 1 11246778899999999
Q ss_pred HHHhcCCceEEeeCCCCC--CcCHHHHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDL 288 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~--~md~~~L~~~i~~~~ 288 (297)
++...|++++.||+|.++ .+|++.|++++++..
T Consensus 99 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 99 AAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred HHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 999999999999998754 999999999997643
No 46
>KOG1368|consensus
Probab=97.99 E-value=1.5e-05 Score=71.57 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=79.7
Q ss_pred HHHHhccccc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678 151 ILSDSIACIG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA 228 (297)
Q Consensus 151 ~l~~~lN~n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~ 228 (297)
|-..++|... ..|..-|-+..+|++ +|+|+|-. .|.|++.||++|+.|+++.-++
T Consensus 38 Mr~am~eA~vgDdVyGeD~tt~rLE~~----vA~l~GKE-----------AgLFv~SGTmgNllaIm~Hc~~-------- 94 (384)
T KOG1368|consen 38 MRRAMAEASVGDDVYGEDPTTNRLEQR----VAELFGKE-----------AGLFVPSGTMGNLLAIMVHCHQ-------- 94 (384)
T ss_pred HHHHHhhcccCcccccCCccHHHHHHH----HHHHhCcc-----------ceeeecccccccHHHHHHHhcC--------
Confidence 3344444433 357778899999985 47888875 3999999999999999986442
Q ss_pred CCCCCCcCCCCceEEEecCCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 229 HPDWKDSDIIANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+.-.|+|.+.+|--...++. +.|+.++.|...++|.||.++++++|+.
T Consensus 95 ----------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~ 145 (384)
T KOG1368|consen 95 ----------RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRV 145 (384)
T ss_pred ----------CCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcC
Confidence 23468899999977777654 4577899999999999999999999974
No 47
>PLN02721 threonine aldolase
Probab=97.97 E-value=2.9e-05 Score=72.07 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=68.3
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
..+|....+|.. +++++|.+ .+++|++||++|+.++.+..+. +.-.|
T Consensus 37 ~~~~~~~~l~~~----la~~~~~~-----------~~~~~~~Gs~a~~~~l~~~~~~------------------~gd~V 83 (353)
T PLN02721 37 GYDPTALRLEEE----MAKIFGKE-----------AALFVPSGTMGNLISVLVHCDV------------------RGSEV 83 (353)
T ss_pred CCCHHHHHHHHH----HHHHhCCc-----------eeEEecCccHHHHHHHHHHccC------------------CCCeE
Confidence 335555666664 56666764 2788999999998777764210 11247
Q ss_pred EecCCCcchHHH---HHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 244 ~~s~~aH~Si~K---aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++++.+|+++.+ .+...|++++.||.|++|.+|+++|++.|++.
T Consensus 84 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 130 (353)
T PLN02721 84 ILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPK 130 (353)
T ss_pred EEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhc
Confidence 788999999988 46778999999999999999999999999753
No 48
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=9.1e-05 Score=70.86 Aligned_cols=129 Identities=19% Similarity=0.138 Sum_probs=91.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHhc---ccccc--ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSI---ACIGF--TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~l---N~n~~--~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
.|+.+..++..+ ..+.+.+..++ |.|.+ .+..+..++....++...+++++|.++. ..-+||+|.|
T Consensus 24 vylD~aa~~~~p-~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~--------~eIvft~~tT 94 (405)
T COG0520 24 VYLDNAATSQKP-QAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS--------DEIVFTRGTT 94 (405)
T ss_pred EEecCcccccCC-HHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCChh
Confidence 466666555533 44455555543 44433 3444555677888899999999999852 2699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
++..+...+.... + .+.-.|++|+..|.|. ...++-.|+.|+.||++++|.++.++|++.
T Consensus 95 ~aln~va~~l~~~-~---------------~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~ 158 (405)
T COG0520 95 EALNLVARGLGRS-L---------------KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL 158 (405)
T ss_pred HHHHHHHHHhhhh-h---------------cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHh
Confidence 9987766653221 1 1224688899999875 456666799999999999999999999996
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 159 i~~ 161 (405)
T COG0520 159 ITP 161 (405)
T ss_pred cCC
Confidence 654
No 49
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=97.88 E-value=0.00012 Score=68.78 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=74.4
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
+..+....++=+++.+-+++++|.+++. .-+||+|+|+++-.++...+... . +.-.
T Consensus 35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~--------~v~~~~~~t~a~~~~~~~l~~~~-~---------------~g~~ 90 (371)
T PF00266_consen 35 SHRSREFAEILEEAREALAKLLGAPPDE--------EVVFTSNGTEALNAVASSLLNPL-K---------------PGDE 90 (371)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHTSSTTE--------EEEEESSHHHHHHHHHHHHHHHG-T---------------TTCE
T ss_pred cchhhhhhHHHHHHHHHHHHhcCCcccc--------ccccccccchhhhhhhhcccccc-c---------------cccc
Confidence 3334434444456889999999998721 47899999998888887765431 1 1225
Q ss_pred EEecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 243 i~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
|+++...|+|.. ..+...|++|+.||.+.++.+|+++++++|.
T Consensus 91 vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~ 137 (371)
T PF00266_consen 91 VLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN 137 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence 777889999988 3444678999999999999999999999995
No 50
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=97.84 E-value=0.00015 Score=68.11 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
...-.++.+++++++|.++. ...+||+|||+++..++.+. .. +.-.|+++..+
T Consensus 43 ~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~al~~~~~~~----~~---------------~gd~vl~~~~~ 95 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSS--------AHVVFTNNATTALNIALKGL----LK---------------EGDHVITTPME 95 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHHHHHHHHHHhc----cC---------------CCCEEEECcch
Confidence 34555688899999998642 14889999999988766541 11 11256778889
Q ss_pred cchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 250 HSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 250 H~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|+++. +.++..|++++.|++++++.+|+++|++.+++
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~ 136 (376)
T TIGR01977 96 HNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT 136 (376)
T ss_pred hhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence 98865 45566799999999999999999999998854
No 51
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=97.82 E-value=0.00068 Score=61.88 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+.-+.+++++|.+. .-++|+|+|++|..++.+.. . +.-.|+++..+|.|+.
T Consensus 63 ~~~~~~A~~~ga~~----------~~~~~~Gst~a~~~~l~al~----~---------------~gd~Vlv~~~~h~s~~ 113 (294)
T cd00615 63 EAQELAARAFGAKH----------TFFLVNGTSSSNKAVILAVC----G---------------PGDKILIDRNCHKSVI 113 (294)
T ss_pred HHHHHHHHHhCCCC----------EEEEcCcHHHHHHHHHHHcC----C---------------CCCEEEEeCCchHHHH
Confidence 45567889999754 24459999999988877641 1 1225778889999999
Q ss_pred HHHHhcCCceEEeeCCCC------CCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDS------YKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~------~~md~~~L~~~i~~ 286 (297)
.++.+.|..++.|+++.+ +.+|++.|+++|++
T Consensus 114 ~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~ 151 (294)
T cd00615 114 NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIE 151 (294)
T ss_pred HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHh
Confidence 999999999988887532 48999999999975
No 52
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.80 E-value=0.00037 Score=65.67 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+..+.+++++|.++ ..+++||+++|..++.+.. . +.-.|+++...|+|+.
T Consensus 55 ~~~e~lA~~~g~~~-----------~~i~~g~~~a~~~~~~~l~----~---------------~gd~Vl~~~~~h~s~~ 104 (370)
T TIGR02539 55 DFLEDLAEFLGMDE-----------ARVTHGAREGKFAVMHALC----K---------------EGDWVVLDGLAHYTSY 104 (370)
T ss_pred HHHHHHHHHhCCCc-----------eEEECChHHHHHHHHHHhh----C---------------CCCEEEECCcccHHHH
Confidence 34566899999974 6678999999987765531 1 1124677889999999
Q ss_pred HHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~ 288 (297)
.+++..|.+++.+|.+ +++.+|+++|+++|++..
T Consensus 105 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 140 (370)
T TIGR02539 105 VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVE 140 (370)
T ss_pred HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhh
Confidence 9999999999999987 468999999999997643
No 53
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=97.79 E-value=0.00022 Score=65.49 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=81.2
Q ss_pred HhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy1678 154 DSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWK 233 (297)
Q Consensus 154 ~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~ 233 (297)
...+.+...+...+....+|..+.+++...+|.+... ...++|+|||+++..++.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-------~~~~~~~~~t~a~~~~~~~~~~-------------- 81 (350)
T cd00609 23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP-------EEIVVTNGAQEALSLLLRALLN-------------- 81 (350)
T ss_pred HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc-------ceEEEecCcHHHHHHHHHHhCC--------------
Confidence 4566666667777888899999999999998864321 3588999999999887776521
Q ss_pred CcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCH--HHHHHH
Q psy1678 234 DSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRG--DALEAA 283 (297)
Q Consensus 234 ~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~--~~L~~~ 283 (297)
+.-+|+++..+|+++.+++..+|++++.||+++++.++. +.++..
T Consensus 82 -----~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (350)
T cd00609 82 -----PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAA 128 (350)
T ss_pred -----CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhh
Confidence 112578899999999999999999999999998888876 454443
No 54
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=97.78 E-value=0.00014 Score=67.06 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+++++++| ++ ..++|+|||++|..++.+... +.-.|+++..+|+++.
T Consensus 36 ~l~~~~a~~~g-~~----------~~~~~~~gt~a~~~~~~~l~~-------------------~gd~v~~~~~~~~~~~ 85 (338)
T cd06502 36 KLEARAAELFG-KE----------AALFVPSGTAANQLALAAHTQ-------------------PGGSVICHETAHIYTD 85 (338)
T ss_pred HHHHHHHHHhC-CC----------eEEEecCchHHHHHHHHHhcC-------------------CCCeEEEecCcceeee
Confidence 45678899999 43 599999999999887765311 1124668899999887
Q ss_pred HH---HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Ka---a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++ +.+.|++++.||.+. +.+|+++|+++|++
T Consensus 86 ~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~ 119 (338)
T cd06502 86 EAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP 119 (338)
T ss_pred cCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence 63 556899999999876 88999999999975
No 55
>PRK08361 aspartate aminotransferase; Provisional
Probab=97.78 E-value=0.0003 Score=66.71 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678 146 AIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225 (297)
Q Consensus 146 svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~ 225 (297)
..+.+.+...+......|...+....+++.+.+|+.+.+|.+-+ ...-++|+|||+++..++.+.. .
T Consensus 49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~-- 115 (391)
T PRK08361 49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-------VDNVIVTAGAYEATYLAFESLL----E-- 115 (391)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------cccEEEeCChHHHHHHHHHHhc----C--
Confidence 33455555555443334544556778888899999888775321 1258899999999888776531 1
Q ss_pred HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|++.+-+|.++..++...|++++.||+|+ ++.+|+++|++.+++
T Consensus 116 -------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 165 (391)
T PRK08361 116 -------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK 165 (391)
T ss_pred -------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 112466788899999999999999999999986 458999999998864
No 56
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.75 E-value=0.00029 Score=67.58 Aligned_cols=131 Identities=14% Similarity=0.030 Sum_probs=83.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcc---cccccc--ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678 132 PKFHAYFPTANSYPAIVADILSDSIA---CIGFTW--IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA 206 (297)
Q Consensus 132 p~~~g~~~s~~~~~svl~d~l~~~lN---~n~~~~--~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG 206 (297)
..|+++-.+++.+..++ +.+...+. .|...+ ..+.....+-.++.+.+++++|.++. ..-+||+|+
T Consensus 33 ~iyLd~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~ 103 (424)
T PLN02855 33 LVYLDNAATSQKPAAVL-DALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS--------REIVFTRNA 103 (424)
T ss_pred eEEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEeCCH
Confidence 35787765555555544 33433332 222111 11222333344678899999998531 158999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678 207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEA 282 (297)
Q Consensus 207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~ 282 (297)
|+++...+.+.....+ .+.-.|+++...|+|. ...++..|+.++.||++.++.+|+++|++
T Consensus 104 t~al~~i~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~ 168 (424)
T PLN02855 104 TEAINLVAYTWGLANL---------------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKE 168 (424)
T ss_pred HHHHHHHHHHhhhhcC---------------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHH
Confidence 9998776653210000 1122577888888874 45567789999999999888999999999
Q ss_pred HHHH
Q psy1678 283 AIEE 286 (297)
Q Consensus 283 ~i~~ 286 (297)
.|.+
T Consensus 169 ~i~~ 172 (424)
T PLN02855 169 LLSE 172 (424)
T ss_pred Hhcc
Confidence 9864
No 57
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00011 Score=67.82 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=70.6
Q ss_pred cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..|...|....+|. ++++++|. . ..+|+++||++|.+||.+.-+ +.
T Consensus 29 ~~YG~D~~~~~~e~----~~ae~~g~-~----------a~~Fv~sGT~aN~lal~~~~~-------------------~~ 74 (342)
T COG2008 29 DVYGEDPTTNALEQ----RIAELFGK-E----------AALFVPSGTQANQLALAAHCQ-------------------PG 74 (342)
T ss_pred CCCCCCHHHHHHHH----HHHHHhCC-c----------eEEEecCccHHHHHHHHHhcC-------------------CC
Confidence 45777888877776 78999999 4 499999999999999988521 12
Q ss_pred eEEEecCCCcchHHHHHHh--cC-CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 241 LVGYCSDQAHSSVERAGLL--GG-VTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~--lg-~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
-.++|-+++|...+.+..+ ++ ...+.+...++|+|+++.+++.|..
T Consensus 75 ~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~ 123 (342)
T COG2008 75 ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP 123 (342)
T ss_pred CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC
Confidence 2578999999999986543 33 3444444457999999999999975
No 58
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.69 E-value=0.00047 Score=65.30 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHhccc---c-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSIAC---I-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE 208 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~ 208 (297)
.|+.+-..++.+..++. .+...+.. + ...+..+.....+-.++.+.+++++|.++. .-++|+|+|+
T Consensus 19 ~yl~~~~~~~~p~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~---------~v~~~~~~t~ 88 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVAD-AVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP---------EVVFGANATS 88 (397)
T ss_pred EEecCCccCCCCHHHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC---------eEEEeCCHHH
Confidence 46666544444455443 33233221 1 112322233344556788999999998753 4788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH----HHHHhcCCceEEeeCCC-CCCcCHHHHHHH
Q psy1678 209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE----RAGLLGGVTIRGLPADD-SYKLRGDALEAA 283 (297)
Q Consensus 209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~ 283 (297)
++...+.+.... . .+.-.|+++...|+|.. ++++..|++++.+++++ ++.+|++.|++.
T Consensus 89 ~l~~~~~~~~~~-~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T TIGR01976 89 LTFLLSRAISRR-W---------------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASL 152 (397)
T ss_pred HHHHHHHHHHhc-C---------------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHh
Confidence 876555443211 0 11225777888998864 56777899999999986 799999999999
Q ss_pred HHH
Q psy1678 284 IEE 286 (297)
Q Consensus 284 i~~ 286 (297)
|.+
T Consensus 153 i~~ 155 (397)
T TIGR01976 153 LSP 155 (397)
T ss_pred cCC
Confidence 864
No 59
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=97.63 E-value=0.00029 Score=65.37 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=70.1
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|...++|+ .+++++|.+ ..++|++||+++..++.+.+- .+.-.|
T Consensus 15 ~~~~~~~~~~~----~la~~~~~~-----------~~~~~~sgt~al~~~l~~l~~------------------~~gd~v 61 (352)
T cd00616 15 TLGPKVREFEK----AFAEYLGVK-----------YAVAVSSGTAALHLALRALGI------------------GPGDEV 61 (352)
T ss_pred cCCHHHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcCC------------------CCCCEE
Confidence 34555566665 677778864 378999999999888876521 012257
Q ss_pred EecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678 244 YCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 285 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~ 285 (297)
+++..+|.+...++...|++++.+++++ ++.+|++.|++.++
T Consensus 62 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 104 (352)
T cd00616 62 IVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT 104 (352)
T ss_pred EeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence 7899999999999999999999999997 89999999999884
No 60
>PRK09082 methionine aminotransferase; Validated
Probab=97.62 E-value=0.00067 Score=64.24 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=81.6
Q ss_pred HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678 149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA 228 (297)
Q Consensus 149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~ 228 (297)
-+.+...+......|........++..+.+|+.+++|.+... ....++|+|||+++..++.+.. .
T Consensus 49 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~------~~~i~~t~G~~~al~~~~~~~~----~----- 113 (386)
T PRK09082 49 VEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA------DSEITVTAGATEALFAAILALV----R----- 113 (386)
T ss_pred HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCCHHHHHHHHHHHHc----C-----
Confidence 344444443322334444556788889999999999875310 0148899999999988776531 1
Q ss_pred CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678 229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-+|.++..+++..|.+++.+|++ +++.+|+++|++.++.
T Consensus 114 ----------~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (386)
T PRK09082 114 ----------PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP 162 (386)
T ss_pred ----------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence 11246678889999999999999999999997 4689999999998853
No 61
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.59 E-value=0.00098 Score=61.75 Aligned_cols=91 Identities=11% Similarity=0.006 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.+-..+.+.+++++|.++.. ...++|+|||+++..++..... .+.-+++.+...+
T Consensus 31 ~~~~~~~~~la~~~~~~~~~-------~~i~~~~~gt~~l~~~~~~~~~------------------~~~~vi~~~~~~~ 85 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNH-------TCVLLQGSGTFAVEATIGSLVP------------------RDGKLLVLINGAY 85 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCC-------cEEEEeCCcHHHHHHHHHhccC------------------CCCeEEEECCCch
Confidence 44556889999999998631 1466899999999887766421 1122444444444
Q ss_pred ch-HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 251 SS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 251 ~S-i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.+ +..++...|++++.|+.++++.+|+++|++.|++
T Consensus 86 ~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 122 (355)
T TIGR03301 86 GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAA 122 (355)
T ss_pred hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHh
Confidence 33 5678888999999999998899999999999875
No 62
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.53 E-value=0.00092 Score=62.60 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
...+-.++.+.+++++|.+++. -.-+||+|||+++..++.+.-. .+.-+++.+..
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~-------~~i~~t~~~t~al~~~~~~l~~------------------~~~~vlv~~~~ 87 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGY-------TSVLLQGSGTFAVEAVIGSAVP------------------KDGKLLVVING 87 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCCCHHHHHHHHHhcCC------------------CCCeEEEEeCC
Confidence 3334446889999999997521 1378999999999887765311 12234555666
Q ss_pred Ccch-HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 249 AHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 249 aH~S-i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.|.+ +.+.+...|++++.||+++++.+|++.|++.|.+
T Consensus 88 ~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 126 (363)
T TIGR02326 88 AYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAA 126 (363)
T ss_pred hhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence 6666 3677888999999999999999999999999875
No 63
>PRK07179 hypothetical protein; Provisional
Probab=97.52 E-value=0.00098 Score=63.58 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=76.1
Q ss_pred CCCCccccccCCCCCCHHHHHHHHHHHhccccc-cccc--cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC
Q psy1678 128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIG-FTWI--ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG 204 (297)
Q Consensus 128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~-~~~~--~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts 204 (297)
.+.+-.|+|... -+.....+.+.+....+... ..+- ..+...++|+ .+++++|.+. .+||+
T Consensus 58 ~~~~~~YL~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~-----------~~~~~ 121 (407)
T PRK07179 58 ILQSNDYLNLSG-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFES-----------CLLCQ 121 (407)
T ss_pred EeecCCccCCCC-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH----HHHHHhCCCc-----------EEEEC
Confidence 445556777663 23334444455544322211 1111 1234556664 6777788753 68999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678 205 TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 284 (297)
Q Consensus 205 GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i 284 (297)
||++||..++.+... +.-.++++..+|+|+..++...|..++.++ ..|+++|++.|
T Consensus 122 sG~~An~~~l~~l~~-------------------~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-----~~d~~~l~~~l 177 (407)
T PRK07179 122 SGWAANVGLLQTIAD-------------------PNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-----HNDVDHLRRQI 177 (407)
T ss_pred CHHHHHHHHHHHhCC-------------------CCCEEEEECCcCHHHHHHHHHCCCeEEEec-----CCCHHHHHHHH
Confidence 999999988876321 112467789999999999988888766543 35999999988
Q ss_pred HH
Q psy1678 285 EE 286 (297)
Q Consensus 285 ~~ 286 (297)
++
T Consensus 178 ~~ 179 (407)
T PRK07179 178 ER 179 (407)
T ss_pred Hh
Confidence 64
No 64
>PRK06108 aspartate aminotransferase; Provisional
Probab=97.51 E-value=0.0015 Score=61.52 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+.+.+...+......|...+....+.+.+.+|+.+.+|.+-+ ...-++|+||++++..++.+..+
T Consensus 42 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~-------~~~i~~t~g~~~al~~~~~~l~~-------- 106 (382)
T PRK06108 42 IRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATP-------PERIAVTSSGVQALMLAAQALVG-------- 106 (382)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcC-------cceEEEeCChHHHHHHHHHHhcC--------
Confidence 344444444333233555556678888899999999884321 02578899999998776665311
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~ 286 (297)
+.-.|++..-+|..+..++..+|++++.||.+. ++.+|+++|++.+..
T Consensus 107 -----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~ 157 (382)
T PRK06108 107 -----------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP 157 (382)
T ss_pred -----------CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc
Confidence 111466678899999999999999999999974 467999999988753
No 65
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=97.48 E-value=0.00085 Score=63.14 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=74.9
Q ss_pred HHHHHhcccccccccc-CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678 150 DILSDSIACIGFTWIA-SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA 228 (297)
Q Consensus 150 d~l~~~lN~n~~~~~~-~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~ 228 (297)
+.+...+... .+.. +|...++|++ +++.+|.. .++.|+.||.|+..||.+.. +
T Consensus 9 ~~v~~~l~s~--~~~~~g~~~~~fE~~----~a~~~g~~-----------~~~~~~sgt~Al~~al~~l~---~------ 62 (363)
T PF01041_consen 9 DAVLEVLRSG--WLSTYGPYVEEFEKE----FAEYFGVK-----------YAVAVSSGTSALHLALRALG---L------ 62 (363)
T ss_dssp HHHHHHHHHT--CCSSSSHHHHHHHHH----HHHHHTSS-----------EEEEESSHHHHHHHHHHHTT---G------
T ss_pred HHHHHHHHhC--CccCCCHHHHHHHHH----HHHHhCCC-----------eEEEeCChhHHHHHHHHhcC---C------
Confidence 3444444443 2233 6788889984 56666754 48899999999999988731 0
Q ss_pred CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678 229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~ 288 (297)
.+.-.|++|..+..+...|...+|+.++-|++| +++.||++.|+++|.+.+
T Consensus 63 ---------~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t 114 (363)
T PF01041_consen 63 ---------GPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKT 114 (363)
T ss_dssp ---------GTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTE
T ss_pred ---------CcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCc
Confidence 122367789999999999999999999999999 799999999999987643
No 66
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=97.44 E-value=0.0014 Score=62.15 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
.+|...++|+ .+++++|.+ ..++|+|||+++..++.+.. +. +.-.|+
T Consensus 31 ~g~~~~~le~----~la~~~g~~-----------~~v~~~sgt~al~lal~al~---~~---------------~Gd~Vi 77 (379)
T PRK11658 31 TGPKNQALEQ----AFCQLTGNQ-----------HAIAVSSATAGMHITLMALG---IG---------------PGDEVI 77 (379)
T ss_pred CCHhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcC---CC---------------CCCEEE
Confidence 3677777777 456677764 27889999999988886631 10 112577
Q ss_pred ecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
++..+|.+...++...|+.++.|++|. ++.+|++.|+++|.+
T Consensus 78 v~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~ 120 (379)
T PRK11658 78 TPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP 120 (379)
T ss_pred ECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc
Confidence 888999999999999999999999986 457999999999864
No 67
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.39 E-value=0.0016 Score=62.15 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=71.5
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
++....+=+++.+++++++|.+.. ..-++|+|||.++..++... +. +.-.|++
T Consensus 37 ~~~~~~~~~~~~~~l~~~~g~~~~--------~~vi~~~~gt~a~~~a~~~~----~~---------------~Gd~Vlv 89 (401)
T PLN02409 37 SPAFPALTKELLEDVKYIFKTKSG--------TPFIFPTTGTGAWESALTNT----LS---------------PGDKVVS 89 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEeCCcHHHHHHHHHhc----CC---------------CCCEEEE
Confidence 566666777899999999998642 24788999998876666542 11 1114566
Q ss_pred cCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 246 SDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 246 s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++..|++. ...++..|++++.|+.+..+.+|+++|+++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~ 133 (401)
T PLN02409 90 FRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQD 133 (401)
T ss_pred eCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhC
Confidence 77889776 4677888999999999877779999999999863
No 68
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=97.37 E-value=0.002 Score=61.13 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=67.2
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
+|...++| +++++.+|.+ ..++|+|||++...++.+.. . .+.-.|++
T Consensus 30 g~~~~~~e----~~la~~~g~~-----------~~v~~~sgt~aL~~~l~al~---~---------------~pGd~Viv 76 (376)
T TIGR02379 30 GPFSRRCE----TWLENRTGTK-----------KALLTPSCTAALEMAALLLD---I---------------QPGDEVIM 76 (376)
T ss_pred cHHHHHHH----HHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC---C---------------CCcCEEEE
Confidence 45555566 4777777764 38899999999877766530 1 11225778
Q ss_pred cCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~ 286 (297)
+..+|.+...++...|.+++.|++|++ +.+|+++|+++|..
T Consensus 77 ~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~ 118 (376)
T TIGR02379 77 PSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH 118 (376)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence 889999999999999999999999975 68999999998864
No 69
>PRK08960 hypothetical protein; Provisional
Probab=97.37 E-value=0.003 Score=59.75 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=80.1
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+.+.+...+..+...|...+....+.+.+.+|+.+..|++-+. ..-++|+|+++++..++.+- ..
T Consensus 50 v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~~----~~---- 114 (387)
T PRK08960 50 IVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDP-------ERILVTPGGSGALLLASSLL----VD---- 114 (387)
T ss_pred HHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCCh-------hhEEEccCcHHHHHHHHHHh----cC----
Confidence 3444444444333345555566778888888888877764221 25889999999987766542 11
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~ 286 (297)
+.-.|++++-+|++....+...|.+++.||+|++ +.+|++.|++.+++
T Consensus 115 -----------~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (387)
T PRK08960 115 -----------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA 164 (387)
T ss_pred -----------CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc
Confidence 1225677899999999999999999999999764 58999999988764
No 70
>PRK05764 aspartate aminotransferase; Provisional
Probab=97.33 E-value=0.0047 Score=58.40 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=80.6
Q ss_pred HHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 147 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 147 vl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
.+.+.+...++.....|........+++.+.+|+.+..|..-. ...-++|+|+|+++..++.+..+
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~~~~------- 113 (393)
T PRK05764 48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD-------PSQVIVTTGAKQALYNAFMALLD------- 113 (393)
T ss_pred HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC-------HHHEEEeCCcHHHHHHHHHHhcC-------
Confidence 3455555555443334544555677888888888777664211 02478999999998887665411
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|++++-.|..+..+++..|.+++.||+++ .+.+|++.|++++++
T Consensus 114 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (393)
T PRK05764 114 ------------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP 163 (393)
T ss_pred ------------CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc
Confidence 112467788899999999999999999999974 568999999998853
No 71
>PLN02656 tyrosine transaminase
Probab=97.32 E-value=0.0084 Score=57.30 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=79.6
Q ss_pred HHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678 147 IVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225 (297)
Q Consensus 147 vl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~ 225 (297)
.+.+.+..++..+ ...|........+.+.+.+|+....|++-+ ....++|+|+|+++..++.+.. .
T Consensus 52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~-- 118 (409)
T PLN02656 52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLS-------LDDVFITSGCTQAIDVALSMLA----R-- 118 (409)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-------cccEEEeCChHHHHHHHHHHHh----C--
Confidence 4444555555443 234544556677888888999887776421 1258899999999877776531 1
Q ss_pred HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|++++-+|+....++.+.|++++.+|+++ .+.+|+++|++.+++
T Consensus 119 -------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 168 (409)
T PLN02656 119 -------------PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ 168 (409)
T ss_pred -------------CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc
Confidence 111466778888888888999999999999963 468999999987753
No 72
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.31 E-value=0.0045 Score=59.21 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 145 PAIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 145 ~svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
+..+.+.+...++.+ ...|....+...+-+.+.+|+.+.+|.+.... .......-++|+|+++++..++.+..+
T Consensus 52 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~-~~~~~~~i~it~G~~~al~~~~~~~~~---- 126 (412)
T PTZ00433 52 PAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK-STIKKDNVVLCSGVSHAILMALTALCD---- 126 (412)
T ss_pred CHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc-CCCChhhEEEeCChHHHHHHHHHHhcC----
Confidence 345556666655542 22343333456777778888887654110000 000012588999999999887775311
Q ss_pred HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-++.....++..+|++++.+|+++ ++.+|+++|++.+.+
T Consensus 127 ---------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 176 (412)
T PTZ00433 127 ---------------EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD 176 (412)
T ss_pred ---------------CCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc
Confidence 112466677889999999999999999999964 579999999887754
No 73
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.31 E-value=0.0035 Score=59.48 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=76.9
Q ss_pred HHHHHHHhcc-ccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIA-CIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 148 l~d~l~~~lN-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
+.+.+...++ .....|........+-..+.+++++.+|.+-+. ....++|+|++++...++.+. +.
T Consensus 45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~------~~~i~~t~G~~~~l~~~~~~~----~~--- 111 (389)
T PRK05957 45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNN------EQAIVVTAGSNMAFMNAILAI----TD--- 111 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCeEEEeCChHHHHHHHHHHh----cC---
Confidence 3445544443 222334444445566677889999999974210 024789999999887766543 11
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-.++....+++..|+.++.||.++++.+|+++|++.|++
T Consensus 112 ------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 159 (389)
T PRK05957 112 ------------PGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP 159 (389)
T ss_pred ------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc
Confidence 112466676677777777788899999999998899999999998864
No 74
>PRK06207 aspartate aminotransferase; Provisional
Probab=97.31 E-value=0.0048 Score=58.92 Aligned_cols=100 Identities=11% Similarity=0.035 Sum_probs=73.4
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|........+-+.+.+|+++.+|.+-+. ...-++|+|+++++..++.+- +. +.-
T Consensus 73 ~Y~~~~G~~~LR~aia~~l~~~~g~~~~~------~~~I~it~Ga~~al~~~~~~l----~~---------------~Gd 127 (405)
T PRK06207 73 AYTEYRGDADIRELLAARLAAFTGAPVDA------ADELIITPGTQGALFLAVAAT----VA---------------RGD 127 (405)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCCEEEeCCcHHHHHHHHHHh----cC---------------CCC
Confidence 34434456678888999999999975210 025889999999887766542 11 112
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCC-----CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-----DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-----~~~~md~~~L~~~i~~ 286 (297)
.|++..-+++.....+..+|.+++.||++ .++.+|++.|++++++
T Consensus 128 ~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~ 177 (405)
T PRK06207 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA 177 (405)
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh
Confidence 45667788889999999999999999986 3689999999998864
No 75
>PRK12414 putative aminotransferase; Provisional
Probab=97.28 E-value=0.0046 Score=58.51 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=72.9
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|....+...+...+.+|+++++|.+-+. ...-++|+||++++..++.+. +. +.-.
T Consensus 62 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~------~~~i~it~g~~~al~~~~~~l----~~---------------~gd~ 116 (384)
T PRK12414 62 YAPMAGIAALREALAEKTERLYGARYDP------ASEVTVIASASEGLYAAISAL----VH---------------PGDE 116 (384)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEECChHHHHHHHHHHh----cC---------------CCCE
Confidence 3333445678888999999999985210 015889999999887666542 11 1124
Q ss_pred EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
|++++-+|......++..|.+++.||+++ ++.+|++.|++.+++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 161 (384)
T PRK12414 117 VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP 161 (384)
T ss_pred EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCc
Confidence 66778889898999999999999999984 678999999988853
No 76
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=97.28 E-value=0.004 Score=60.28 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
+|...++|+ .+++.+|.+ ..++|++||++++.|+.+.......+. + ..+.-.|++
T Consensus 62 G~~~~~fe~----~lA~~~g~~-----------~~v~~~sGt~al~~aL~al~~~~~~~~---~-------~~pGd~VIv 116 (438)
T PRK15407 62 GRFNDAFEK----KLAEFLGVR-----------YALLVNSGSSANLLAFSALTSPKLGDR---A-------LKPGDEVIT 116 (438)
T ss_pred ChhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHhhcccccc---C-------CCCCCEEEE
Confidence 455566665 556667764 378899999999999987643222110 0 012235778
Q ss_pred cCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~ 286 (297)
+..+|.+...+....|..++.|++| +++.+|++.|+++|..
T Consensus 117 ~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~ 158 (438)
T PRK15407 117 VAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP 158 (438)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc
Confidence 8999999999999999999999998 5789999999998864
No 77
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=97.24 E-value=0.0027 Score=60.01 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+.-+++++.+|.+ ..++|+|||.++.+++.+. .. .+.-.|+++..+|.+..
T Consensus 35 ~~e~~la~~~g~~-----------~~v~~~sgt~al~~~l~~~---~~---------------~~Gd~Viv~~~t~~~~~ 85 (375)
T PRK11706 35 RCQQWLEQRFGSA-----------KVLLTPSCTAALEMAALLL---DI---------------QPGDEVIMPSYTFVSTA 85 (375)
T ss_pred HHHHHHHHHhCCC-----------eEEEECCHHHHHHHHHHHh---CC---------------CCCCEEEECCCCcHHHH
Confidence 3445778888874 3889999999987766543 01 11225778899999999
Q ss_pred HHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~ 286 (297)
.++...|+.++.+++|++ +.+|+++|+++|.+
T Consensus 86 ~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~ 118 (375)
T PRK11706 86 NAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP 118 (375)
T ss_pred HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC
Confidence 999999999999999976 58999999998864
No 78
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=97.23 E-value=0.0019 Score=52.67 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.++++++++.+. ...+|++|||+++..++.+++.. +-.++++...|++..
T Consensus 4 ~~~~~l~~~~~~~~---------~~~~~~~~~t~a~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~ 55 (170)
T cd01494 4 ELEEKLARLLQPGN---------DKAVFVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSRY 55 (170)
T ss_pred HHHHHHHHHcCCCC---------CcEEEeCCcHHHHHHHHHHhCCC-------------------CCEEEEeecccceeh
Confidence 46688999997322 25999999999999999987421 124777888999998
Q ss_pred -HHHHhcCCceEEeeCCCCCCcCH
Q psy1678 255 -RAGLLGGVTIRGLPADDSYKLRG 277 (297)
Q Consensus 255 -Kaa~~lg~~v~~Vp~d~~~~md~ 277 (297)
+.+...|.+++.++.+.++..+.
T Consensus 56 ~~~~~~~g~~~~~v~~~~~~~~~~ 79 (170)
T cd01494 56 WVAAELAGAKPVPVPVDDAGYGGL 79 (170)
T ss_pred hhHHHhcCCEEEEeccCCCCccch
Confidence 88888999999999987654443
No 79
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=97.19 E-value=0.0059 Score=57.93 Aligned_cols=95 Identities=20% Similarity=0.174 Sum_probs=70.6
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
.....+++.+.+|+....|.+-. ....-++|+|||+++..++.+. .. ... .|++.
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~------~~~~i~it~G~~~al~~~~~~~----~~--------------~gd-~vl~~ 121 (391)
T PRK07309 67 AGLLELRQAAADFVKEKYNLDYA------PENEILVTIGATEALSASLTAI----LE--------------PGD-KVLLP 121 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCChHHHHHHHHHHh----cC--------------CCC-EEEEe
Confidence 34567888899999888776321 0025789999999998876653 11 012 45566
Q ss_pred CCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
.-++.....+++..|.+++.+|+++ .+.+|++.|++++++
T Consensus 122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (391)
T PRK07309 122 APAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILE 162 (391)
T ss_pred CCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhc
Confidence 7788888999999999999999976 468999999999864
No 80
>PLN00175 aminotransferase family protein; Provisional
Probab=97.19 E-value=0.0083 Score=57.51 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=80.2
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+.+.+...+......|....+...+.+.+.+|+.+..|++-+. ...-++|+|+++++..++.+. +.
T Consensus 72 ~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~------~~~I~vt~G~~~al~~~~~~l----~~---- 137 (413)
T PLN00175 72 VKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP------EKEVTVTSGCTEAIAATILGL----IN---- 137 (413)
T ss_pred HHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCCEEEeCCHHHHHHHHHHHh----CC----
Confidence 4455555554333345555566788888999999888864210 014788999999987766542 11
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
+.-.|++.+-.+.....++...|.+++.||+++ ++.+|+++|++.+..
T Consensus 138 -----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~ 186 (413)
T PLN00175 138 -----------PGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS 186 (413)
T ss_pred -----------CCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc
Confidence 112466677888888999999999999999984 689999999998854
No 81
>PRK07777 aminotransferase; Validated
Probab=97.19 E-value=0.0068 Score=57.33 Aligned_cols=110 Identities=19% Similarity=0.137 Sum_probs=76.2
Q ss_pred HHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1678 152 LSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD 231 (297)
Q Consensus 152 l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~ 231 (297)
+...+......|...+...++++.+.+|+.+.+|++.+. ...-++|+|||+++..++.+. ..
T Consensus 46 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~~----~~-------- 107 (387)
T PRK07777 46 AQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDP------DTEVLVTVGATEAIAAAVLGL----VE-------- 107 (387)
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCCcHHHHHHHHHHh----cC--------
Confidence 333333333345445566788888889999888875320 014788999999987766532 11
Q ss_pred CCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC---CCcCHHHHHHHHHH
Q psy1678 232 WKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIEE 286 (297)
Q Consensus 232 ~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~---~~md~~~L~~~i~~ 286 (297)
+.-.|++..-.|.+...++...|..++.+|.+++ +.+|++.|++.+.+
T Consensus 108 -------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (387)
T PRK07777 108 -------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP 158 (387)
T ss_pred -------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc
Confidence 1114556677888888999999999999999754 57999999998754
No 82
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.17 E-value=0.0077 Score=55.63 Aligned_cols=122 Identities=12% Similarity=0.033 Sum_probs=74.7
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678 129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE 208 (297)
Q Consensus 129 ~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~ 208 (297)
+.+-.|+|+-. .+.....+.+.+....|+.... ............+.+++++++|.++ .+++++||+
T Consensus 6 ~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~-----------~iv~~sg~~ 72 (349)
T cd06454 6 FCSNDYLGLAN-HPEVIEAAKEALDKYGVGAGGS-RLISGTSDLHEELEEELAEFHGKEA-----------ALVFSSGYA 72 (349)
T ss_pred cccCCccccCC-CHHHHHHHHHHHHHhCCCCCCc-CeecCCchHHHHHHHHHHHHhCCCC-----------EEEeccHHH
Confidence 34445666542 2344445555555433322211 0111123333445567888888642 677888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
+|+.++.+.. . +.-.|++++..|+++..++...|..++.++ .+|++.|++.|++.
T Consensus 73 a~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~le~~i~~~ 127 (349)
T cd06454 73 ANDGVLSTLA----G---------------KGDLIISDSLNHASIIDGIRLSGAKKRIFK-----HNDMEDLEKLLREA 127 (349)
T ss_pred HHHHHHHHhc----C---------------CCCEEEEehhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHHh
Confidence 9987765432 1 111466788999999999999999888776 35888999988764
No 83
>PRK06225 aspartate aminotransferase; Provisional
Probab=97.17 E-value=0.0065 Score=57.32 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+..+++++.+|.++. ..++|+|||+++..++.+.- . ..+ .|++++-.++...
T Consensus 70 ~lr~~ia~~l~~~~~---------~v~~~~g~t~al~~~~~~~~----~--------------~gd-~vl~~~p~y~~~~ 121 (380)
T PRK06225 70 ELRELILKDLGLDDD---------EALITAGATESLYLVMRAFL----S--------------PGD-NAVTPDPGYLIID 121 (380)
T ss_pred HHHHHHHHhcCCCCC---------cEEEeCCHHHHHHHHHHHhc----C--------------CCC-EEEEcCCCCcchH
Confidence 466788888998653 59999999999988877641 1 012 3556667777788
Q ss_pred HHHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADD---SYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~ 286 (297)
.++...|.+++.||++. ++.+|+++|++.+.+
T Consensus 122 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~ 156 (380)
T PRK06225 122 NFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE 156 (380)
T ss_pred HHHHHhCceEEeeccccccCCccCCHHHHHhhcCC
Confidence 88899999999999853 468999999988764
No 84
>PRK07337 aminotransferase; Validated
Probab=97.17 E-value=0.0053 Score=58.09 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678 149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA 228 (297)
Q Consensus 149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~ 228 (297)
.+.+...+......|........+.+.+.+|+.+..|..-+. ..-++|+|+|++...++.+- +.
T Consensus 49 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-------~~i~~t~G~~~al~~~~~~l----~~----- 112 (388)
T PRK07337 49 VEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAP-------ERIVVTAGASAALLLACLAL----VE----- 112 (388)
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-------HhEEEecCcHHHHHHHHHHh----cC-----
Confidence 444554444333345444456788888999998888864210 25789999999877666542 11
Q ss_pred CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-+|.+...++...|.+++.||+|+ ++.+|+++|++.+..
T Consensus 113 ----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (388)
T PRK07337 113 ----------RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE 162 (388)
T ss_pred ----------CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc
Confidence 112467788899999999999999999999974 579999999988753
No 85
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.12 E-value=0.0026 Score=60.33 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=62.2
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..+....+|+.+.+++++++|.+. .-++++|||+++..++.+.. . ... .|+
T Consensus 59 ~~~~~~~l~~~~~~~~~~~~g~~~----------~~v~~~sgt~a~~~~l~~l~----~--------------~Gd-~Vl 109 (402)
T cd00378 59 GCEYVDEIEDLAIERAKKLFGAEY----------ANVQPHSGSQANLAVYFALL----E--------------PGD-TIM 109 (402)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCc----------eeeecCCcHHHHHHHHHHhc----C--------------CCC-EEE
Confidence 345567788888899999999864 24555568999987776531 1 011 355
Q ss_pred ecCCCcchHHH-----HHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVER-----AGLLGGVTIRGLPADD---SYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~K-----aa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~ 286 (297)
++...|.+... ++...|..++.++++. ++.+|+++|++.+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~ 159 (402)
T cd00378 110 GLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE 159 (402)
T ss_pred EecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh
Confidence 55556544322 2555677777776643 699999999999864
No 86
>PLN02231 alanine transaminase
Probab=97.11 E-value=0.021 Score=56.70 Aligned_cols=107 Identities=15% Similarity=0.065 Sum_probs=80.2
Q ss_pred cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..|..+.+...+-+.+.+|+.+..|++-+ ...-++|+|+++++.+++.+.... +.
T Consensus 162 ~~Y~~s~G~~~lReaIA~~~~~r~g~~~~-------pe~I~iT~Ga~~ai~~~~~~l~~~------------------~g 216 (534)
T PLN02231 162 GAYSHSQGIKGLRDAIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRS------------------EK 216 (534)
T ss_pred cCcCCCCCcHHHHHHHHHHHHhccCCCCC-------cccEEEeCCHHHHHHHHHHHhccC------------------CC
Confidence 34666666677878888898888787532 136889999999988877764210 11
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCC
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~ 292 (297)
-.|++..-..+....++...|..++.+|.|+ ++.+|+++|++++++...+|.
T Consensus 217 d~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~ 270 (534)
T PLN02231 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGI 270 (534)
T ss_pred CEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCC
Confidence 2456677788888888999999999999985 379999999999988766653
No 87
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=97.11 E-value=0.0067 Score=57.30 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=67.0
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
.+|....+|+. +++++|.+. .++++|||+|+..++.+.. +. +.-.|+
T Consensus 27 ~g~~~~~le~~----la~~~g~~~-----------~v~~~sgt~al~~~l~al~---~~---------------~Gd~Vi 73 (380)
T TIGR03588 27 QGPTVPAFEEA----LAEYVGAKY-----------AVAFNSATSALHIACLALG---VG---------------PGDRVW 73 (380)
T ss_pred CChhHHHHHHH----HHHHHCCCe-----------EEEEcCHHHHHHHHHHHcC---CC---------------CCCEEE
Confidence 35666667664 556667642 6777889999888776541 10 112477
Q ss_pred ecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
++...|.+...++...|+.++.+++|+ ++.+|+++|+++|++
T Consensus 74 v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~ 116 (380)
T TIGR03588 74 TTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAA 116 (380)
T ss_pred eCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhc
Confidence 888999999999999999999999974 789999999999974
No 88
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=97.11 E-value=0.0066 Score=57.92 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=59.4
Q ss_pred HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH--
Q psy1678 178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER-- 255 (297)
Q Consensus 178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K-- 255 (297)
+.+ +++|.+++ .-+||+|+|+++..++... +.. + .++.+|+++...|.|+..
T Consensus 77 ~~~-~l~g~~~~---------~v~~~~~~t~~l~~~~~~~----~~~----~--------~~~~~i~~~~~~~~s~~~~~ 130 (406)
T TIGR01814 77 LKL-RLVGAKED---------EVVVMNTLTINLHLLLASF----YKP----T--------PKRYKILLEAKAFPSDHYAI 130 (406)
T ss_pred ccc-cccCCCCC---------cEEEeCCchHHHHHHHHHh----cCC----c--------CCccEEEecCCCCChHHHHH
Confidence 345 88998653 5899999999987776543 110 0 122367789999998544
Q ss_pred --HHHhcCCce----EEeeCCCCCCcCHHHHHHHHHH
Q psy1678 256 --AGLLGGVTI----RGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 256 --aa~~lg~~v----~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.++..|+.+ +.|+.+.+|.+|++.|++.++.
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 167 (406)
T TIGR01814 131 ESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEK 167 (406)
T ss_pred HHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHh
Confidence 455678877 5777787899999999998864
No 89
>PRK07682 hypothetical protein; Validated
Probab=97.10 E-value=0.0066 Score=57.18 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=73.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|...+....+.+.+.+|+.+.+|.+-+. ...-++|+||++++..++.+. .. +.-
T Consensus 52 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~l----~~---------------~gd 106 (378)
T PRK07682 52 SYTANAGLLELRQEIAKYLKKRFAVSYDP------NDEIIVTVGASQALDVAMRAI----IN---------------PGD 106 (378)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCChHHHHHHHHHHh----CC---------------CCC
Confidence 34445667788888999999888874210 014889999999988776543 11 112
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
.|++++-+++....++..+|..++.++++ +++.+|+++|++++.+
T Consensus 107 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 153 (378)
T PRK07682 107 EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA 153 (378)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc
Confidence 46677888888999999999999999986 3689999999998754
No 90
>PRK08912 hypothetical protein; Provisional
Probab=97.10 E-value=0.0094 Score=56.34 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=71.7
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|........+.+.+.+|+.+..|++-+. ....++|+|||+++..++.+- .. +.-.
T Consensus 59 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~~----~~---------------~gd~ 113 (387)
T PRK08912 59 YPPMMGLPELRQAVAAHYARFQGLDLDP------ETEVMVTSGATEALAAALLAL----VE---------------PGDE 113 (387)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCCC------cccEEEeCCcHHHHHHHHHHh----cC---------------CCCE
Confidence 3333345678888888998888874220 015889999999986555532 10 1125
Q ss_pred EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 285 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~ 285 (297)
|+++.-+|+.+..++...|.+++.+|+++ ++.+|++.|++.+.
T Consensus 114 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (387)
T PRK08912 114 VVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS 157 (387)
T ss_pred EEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC
Confidence 67788899999999999999999999975 68999999998875
No 91
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=97.06 E-value=0.0027 Score=59.37 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
..+.+++++.+|.+++ .-++|+|+++++.+++.+. .. .++-.|+++.-++...
T Consensus 60 ~~l~~~~a~~~g~~~~---------~I~~~~Gs~e~i~~~~~~~----~~--------------~g~~~vli~~P~y~~y 112 (351)
T PRK01688 60 KAVIENYAAYAGVKPE---------QVLVSRGADEGIELLIRAF----CE--------------PGKDAILYCPPTYGMY 112 (351)
T ss_pred HHHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHh----cC--------------CCCCEEEEcCCCHHHH
Confidence 3677889999999765 5889999999887776542 10 1112466677888889
Q ss_pred HHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678 254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAI 284 (297)
Q Consensus 254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i 284 (297)
..+++..|++++.||.++++++|+++|++++
T Consensus 113 ~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~ 143 (351)
T PRK01688 113 SVSAETIGVEIRTVPTLDNWQLDLPAIADNL 143 (351)
T ss_pred HHHHHHcCCEEEEeecCCCCCCCHHHHHHhc
Confidence 9999999999999999988999999998876
No 92
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.06 E-value=0.0031 Score=60.32 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccC-----------chhhHHHHHHHHHHHH
Q psy1678 114 VMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS-----------PACTELEVVMLDWLGK 182 (297)
Q Consensus 114 il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~-----------p~~~~iE~~v~~~l~~ 182 (297)
+++.|.++...+...|+-|.. --+......-++..+..++..|.+.++.| |-...- +.-+.+|+
T Consensus 3 l~~aL~~y~~~~~~~fh~PGH---k~G~~~~~~p~g~~~~~f~G~~~~~~Dl~te~~~lD~L~~p~G~I~--eAe~~aA~ 77 (417)
T PF01276_consen 3 LFEALKKYAEEGPYSFHMPGH---KGGRGFDKSPAGRLFYDFFGENLFRADLSTEVPGLDDLHDPEGIIK--EAEELAAR 77 (417)
T ss_dssp HHHHHHHHHHTT-EESSSSTT---TTTTCGGGSHHHHHHHHHH-HHHHHT---TTSTTCBBTTTTBTHHH--HHHHHHHH
T ss_pred HHHHHHHHHhCCCceeecCcc---CCCCCCCcchHHHHHHHHHhhHHHHHHHhhcccccCcccCCccHHH--HHHHHHHH
Confidence 456667777777777776643 32222222334555555555544444432 322222 34468999
Q ss_pred HcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV 262 (297)
Q Consensus 183 llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~ 262 (297)
++|.+.+ -.+|.|.|.+|..++.++-. +.-.|++...+|-|+..|+.+.|+
T Consensus 78 ~fGAd~t----------~flvnGsT~g~~a~i~a~~~-------------------~gd~VLv~RN~HkSv~~alil~ga 128 (417)
T PF01276_consen 78 AFGADKT----------FFLVNGSTSGNQAMIMALCR-------------------PGDKVLVDRNCHKSVYNALILSGA 128 (417)
T ss_dssp HHTESEE----------EEESSHHHHHHHHHHHHHTT-------------------TTCEEEEETT--HHHHHHHHHHTE
T ss_pred hcCCCeE----------EEEecCchHHHHHHHHHhcC-------------------CCCEEEEcCCcHHHHHHHHHHcCC
Confidence 9999985 56789999999988887621 122578899999999999999999
Q ss_pred ceEEeeCC-CC----CCcCH-----HHHHHHHHHHH
Q psy1678 263 TIRGLPAD-DS----YKLRG-----DALEAAIEEDL 288 (297)
Q Consensus 263 ~v~~Vp~d-~~----~~md~-----~~L~~~i~~~~ 288 (297)
.++.|+.. +. +.+++ +.++++|++.-
T Consensus 129 ~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p 164 (417)
T PF01276_consen 129 IPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHP 164 (417)
T ss_dssp EEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCT
T ss_pred eEEEecCCccccCCccCCChhhhhHHHHHHHHHhCc
Confidence 88877764 21 25666 99999998753
No 93
>PRK10534 L-threonine aldolase; Provisional
Probab=97.04 E-value=0.0036 Score=57.83 Aligned_cols=90 Identities=20% Similarity=0.190 Sum_probs=62.4
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|...|...++|+. +++++|.++ .++|+||+++++.++.+... ..+ .
T Consensus 30 Y~~~~~~~~L~~~----la~~~g~~~-----------~~v~~~g~~a~~~~l~~~~~------------------~gd-~ 75 (333)
T PRK10534 30 YGDDPTVNALQDY----AAELSGKEA-----------ALFLPTGTQANLVALLSHCE------------------RGE-E 75 (333)
T ss_pred cCCCHHHHHHHHH----HHHHhCCCe-----------EEEeCchHHHHHHHHHHhcC------------------CCC-e
Confidence 3345666677764 466678864 57999999999999886311 012 3
Q ss_pred EEecCCCcchHHHH--HHhcC-CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERA--GLLGG-VTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Ka--a~~lg-~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|+++..+|.+..++ +..+| ..++.+++++++.+|+++|+++|.+
T Consensus 76 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~ 122 (333)
T PRK10534 76 YIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKP 122 (333)
T ss_pred eEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcc
Confidence 55677788544443 34454 6778888888999999999998854
No 94
>PTZ00377 alanine aminotransferase; Provisional
Probab=97.01 E-value=0.022 Score=55.72 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=78.7
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|....+...+-+.+.+|+.+..|++-+. ..-++|+|+++++..++.+... . +.-
T Consensus 110 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~~~~~l~~----~--------------~gD 164 (481)
T PTZ00377 110 AYTDSAGYPFVRKAVAAFIERRDGVPKDP-------SDIFLTDGASSGIKLLLQLLIG----D--------------PSD 164 (481)
T ss_pred CcCcccCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEcCCHHHHHHHHHHHhcc----C--------------CCC
Confidence 35555556678888889998887765321 2688999999999888776410 0 112
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCC
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G 291 (297)
.|++..-++++...++...|..++.||+++ .+.+|+++|+++|.+...+|
T Consensus 165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 216 (481)
T PTZ00377 165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG 216 (481)
T ss_pred EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcC
Confidence 467788899999999999999999999975 36899999999998755544
No 95
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=97.00 E-value=0.0034 Score=58.46 Aligned_cols=105 Identities=24% Similarity=0.341 Sum_probs=78.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCC-eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGG-GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~-G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
.|..+.+...++..+.+|+.+--|.+.+ .. .+++++|+.+++.++..... . .+.
T Consensus 39 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~~i~~~~G~~~~~~~~~~~~~--~---------------~~~ 93 (363)
T PF00155_consen 39 GYPPPQGYPELREAIADFLGRRYGVPVD--------PEANILVTSGAQAALFLLLRLLK--I---------------NPG 93 (363)
T ss_dssp SSTCTTHHHHHHHHHHHHHHHHHTHHTT--------GGEGEEEESHHHHHHHHHHHHHH--S---------------STT
T ss_pred cCCCchhhHHHHHHHHHHhhhccCcccc--------cceEEEEecccccchhhhhhccc--c---------------ccc
Confidence 4444555678888888888866666543 13 56677777777766655432 0 012
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCC
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G 291 (297)
-.|++.+-+|+.+..+++..|+.++.+|++ .++.+|+++|++.+++...++
T Consensus 94 ~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (363)
T PF00155_consen 94 DTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG 146 (363)
T ss_dssp SEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred ccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence 257778899999999999999999999975 789999999999999987776
No 96
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=96.99 E-value=0.011 Score=55.24 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+++++.+|.+.. ..-++|+|+++++..++.+. .. +.-.|+++.-++..+.
T Consensus 67 ~lr~~ia~~~~~~~~--------~~I~~t~G~~~~i~~~~~~~----~~---------------~gd~vlv~~P~y~~~~ 119 (356)
T PRK04870 67 ALKAALRAAMGVPAG--------ADVLLGNGSDELIQLLALAC----AK---------------PGATVLAPEPGFVMYR 119 (356)
T ss_pred HHHHHHHHHhCcCCC--------CcEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEECCCCHHHHH
Confidence 455677777887642 14778888888776655442 11 1124667788888899
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.++...|++++.+|+++++.+|++.|++.+..
T Consensus 120 ~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~ 151 (356)
T PRK04870 120 MSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE 151 (356)
T ss_pred HHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc
Confidence 99999999999999998899999999998864
No 97
>PRK06836 aspartate aminotransferase; Provisional
Probab=96.96 E-value=0.015 Score=55.25 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=75.4
Q ss_pred HHHHHHHHhcccc---ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 147 IVADILSDSIACI---GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 147 vl~d~l~~~lN~n---~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
.+.+.+..+++.. ...+........+.+.+.+|+....|.+-+ ...-++|+|+|++...++.+. ..
T Consensus 50 ~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~ 118 (394)
T PRK06836 50 AVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT-------ADHIVMTCGAAGALNVALKAI----LN 118 (394)
T ss_pred HHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC-------cCcEEEeCChHHHHHHHHHHh----cC
Confidence 3445555544432 222333344455666677777766554211 125789999999887766543 11
Q ss_pred HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 286 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~ 286 (297)
+.-.|++++.++.....++...|++++.||+|++ +.+|+++|++.+++
T Consensus 119 ---------------~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 119 ---------------PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred ---------------CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 1124667888888888899999999999999876 89999999998854
No 98
>PLN02368 alanine transaminase
Probab=96.95 E-value=0.026 Score=54.15 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=75.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|..+.+...+-..+.+|+.+..|++-+. -.-++|+|++++...++.+... . +.-
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~~~~~l~~---~---------------pGd 156 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDP-------ELIFLTDGASKGVMQILNAVIR---G---------------EKD 156 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEcccHHHHHHHHHHHHcC---C---------------CCC
Confidence 34433344567778889998887864211 2588999999998777765310 0 111
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCC
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G 291 (297)
.|++.+-+.+....++...|.+++.||+++ ++.+|++.|++.+++...++
T Consensus 157 ~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~ 208 (407)
T PLN02368 157 GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKG 208 (407)
T ss_pred EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcC
Confidence 456677788888999999999999999975 47999999999998654443
No 99
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.94 E-value=0.007 Score=57.13 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=80.0
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
..+.+...+...-. ..+|-..++|+ ++++.+|-.. .+.|+.||.|+.+||++.- +
T Consensus 17 e~~~v~~vl~sg~i--~~G~~v~~FE~----~~ae~~G~k~-----------ava~~sgT~AL~laL~al~---i----- 71 (374)
T COG0399 17 ELAAVQEVLKSGWL--TGGPFVRRFEQ----AFAEYLGVKY-----------AVAVSSGTAALHLALLALA---I----- 71 (374)
T ss_pred HHHHHHHHHHcCCe--ecChHHHHHHH----HHHHHhCCCe-----------EEEecChHHHHHHHHHhcC---C-----
Confidence 34445555554322 23788889997 7888899864 7889999999999998631 1
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEED 287 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~~ 287 (297)
+ +.-.|+++..+-.+-..+.-+.|.+.+-|.+|. .+.||++.||++|.+.
T Consensus 72 -g---------~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~ 122 (374)
T COG0399 72 -G---------PGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR 122 (374)
T ss_pred -C---------CCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC
Confidence 1 112567788888888888889999999999995 6999999999999875
No 100
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=96.94 E-value=0.019 Score=53.61 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=73.8
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|........+.+.+.+|+.+..|.+-+. ...-++|+|++++...++.+. ... | ...-
T Consensus 31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~Iiit~Gs~~ai~~~~~~~----~~~----g--------~~~d 88 (350)
T TIGR03537 31 QYPSALGTKALREAISGWFERRFGVKLDP------DAQVLPSAGSKEAIFHFPLVF----IDP----E--------EDRR 88 (350)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEcCChHHHHHHHHHHH----cCC----C--------CCCc
Confidence 34433445678888999998888865321 015889999999887765543 110 1 0112
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
.|+++.-++.....++..+|.+++.||+++ .+++|+++|++++.+
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 135 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE 135 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh
Confidence 466778899999999999999999999973 356999999998865
No 101
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=96.92 E-value=0.0031 Score=61.25 Aligned_cols=92 Identities=12% Similarity=-0.011 Sum_probs=65.7
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc---CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ---GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t---sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
.....+|..+.+.++++||.+++ .-++| ++||++|+.++.+. +. +.-.|
T Consensus 76 ~~~~~iE~~ar~~~a~lf~a~~~---------~~~~~~~~~sgt~an~~v~~al----~~---------------~gd~I 127 (452)
T PTZ00094 76 EVVDKIENLCQKRALEAFGLDPE---------EWGVNVQPYSGSPANFAVYTAL----LQ---------------PHDRI 127 (452)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc---------cceeecCCCchHHHHHHHHHHh----cC---------------CCCEE
Confidence 44578888889999999998653 12244 89999999988774 11 11257
Q ss_pred EecCCCcchHHHHHH----------hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVERAGL----------LGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa~----------~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...|.+....+. ..++.+..+++|.+|.+|+++|++.+++
T Consensus 128 i~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~ 180 (452)
T PTZ00094 128 MGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA 180 (452)
T ss_pred EecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH
Confidence 778888877654331 1224566777888899999999999975
No 102
>PRK08636 aspartate aminotransferase; Provisional
Probab=96.92 E-value=0.033 Score=53.04 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 145 PAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 145 ~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
..++..+.....+.....|....+...+...+.+|+.+..|++-+. . .-++|+|++++...++.+- ..
T Consensus 49 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~-------~~~I~it~G~~~al~~~~~~l----~~ 117 (403)
T PRK08636 49 QHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDP-------ETEVVATMGSKEGYVHLVQAI----TN 117 (403)
T ss_pred HHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCeEEECCChHHHHHHHHHHh----CC
Confidence 3344444443333223344444455678788899999888875321 1 3789999999887766542 11
Q ss_pred HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHHH
Q psy1678 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLK 289 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~ 289 (297)
+.-.|++.+-+.+.+..++...|.+++.||++ +++.+|++.|...+++...
T Consensus 118 ---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 118 ---------------PGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred ---------------CCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 12256677788888888999999999999985 4579999988777765443
No 103
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=96.91 E-value=0.01 Score=55.62 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=67.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
|....+-.++.+.+++++|.+++. ..-++|++||+++..++.+.-. .+.-+++ .
T Consensus 33 ~~~~~~~~~~~~~l~~l~~~~~~~-------~~i~~~~~gt~~l~~~~~~l~~------------------~~~~vlv-~ 86 (368)
T PRK13479 33 DDFNALTASVRAKLVAIATGEEGY-------TCVPLQGSGTFSVEAAIGSLVP------------------RDGKVLV-P 86 (368)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCCcHHHHHHHHHhccC------------------CCCeEEE-E
Confidence 334445667899999999986421 1366899999999887776411 1122333 3
Q ss_pred CCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
...+|.. .+++...|++++.||++.++.+|+++|+++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 128 (368)
T PRK13479 87 DNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAA 128 (368)
T ss_pred eCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHh
Confidence 4555554 488888999999999998889999999999864
No 104
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=96.89 E-value=0.011 Score=55.96 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++-+.+++++|.+ ..++++||++||..++.+. +. +.-.|+++...|.|+.
T Consensus 87 ~le~~ia~~~g~~-----------~~ii~~~~~~a~~~~~~~l----~~---------------~gd~vi~~~~~~~s~~ 136 (393)
T TIGR01822 87 ELEAKIAAFLGTE-----------DTILYASCFDANGGLFETL----LG---------------AEDAIISDALNHASII 136 (393)
T ss_pred HHHHHHHHHhCCC-----------cEEEECchHHHHHHHHHHh----CC---------------CCCEEEEeccccHHHH
Confidence 3446778888874 3778899999998655432 11 1125777899999999
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHC
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 290 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~ 290 (297)
.++.+.+...+.++ .+|+++|++.|.+....
T Consensus 137 ~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~ 167 (393)
T TIGR01822 137 DGVRLCKAKRYRYA-----NNDMADLEAQLKEARAA 167 (393)
T ss_pred HHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhc
Confidence 99998887665543 48999999999875443
No 105
>PRK05942 aspartate aminotransferase; Provisional
Probab=96.86 E-value=0.018 Score=54.67 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=71.2
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|....+...+.+.+.+|+.+..|.+-+. ....++|+|++++...++.+. +. +.-
T Consensus 68 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~------~~~i~vt~G~~~al~~~~~~~----~~---------------~gd 122 (394)
T PRK05942 68 GYPPFEGTASFRQAITDWYHRRYGVELDP------DSEALPLLGSKEGLTHLALAY----VN---------------PGD 122 (394)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCCCcCC------CCeEEEccChHHHHHHHHHHh----CC---------------CCC
Confidence 34333344678888999999888864210 013677999999988776543 11 112
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
.|+++.-++.....++...|.+++.||+|. .+.+|+++|++.+.+
T Consensus 123 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 169 (394)
T PRK05942 123 VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ 169 (394)
T ss_pred EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc
Confidence 466778888888888889999999999984 357999999988853
No 106
>PLN02483 serine palmitoyltransferase
Probab=96.86 E-value=0.019 Score=56.44 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678 127 THWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA 206 (297)
Q Consensus 127 ~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG 206 (297)
..+++-.|+|+-.+.+.....+.+.+...--..+...... .....-.++-+.+++++|-++ .++.+.|
T Consensus 103 ~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~-g~~~~~~ele~~lA~~~g~~~-----------ai~~~~G 170 (489)
T PLN02483 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDG-GTTKLHRELEELVARFVGKPA-----------AIVFGMG 170 (489)
T ss_pred EEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCcccccc-CCcHHHHHHHHHHHHHhCCCc-----------EEEECCH
Confidence 4677778999875444333344444444321111222111 122333345567788888654 4455557
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+.+|+.++.+. +. +.-.|++.+..|.|+..++++.|++++.+|.+ |.++|++.|++
T Consensus 171 ~~an~~~i~al----~~---------------~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~ 226 (489)
T PLN02483 171 YATNSTIIPAL----IG---------------KGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLRE 226 (489)
T ss_pred HHHHHHHHHHh----CC---------------CCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHh
Confidence 88887555441 11 11257789999999999999999999999865 57888888876
Q ss_pred HH
Q psy1678 287 DL 288 (297)
Q Consensus 287 ~~ 288 (297)
..
T Consensus 227 ~i 228 (489)
T PLN02483 227 QI 228 (489)
T ss_pred hh
Confidence 44
No 107
>PRK07683 aminotransferase A; Validated
Probab=96.84 E-value=0.018 Score=54.60 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+.+.+...+..+...|...+....+++.+.+|+.+..|.+-+. ....++|+|+|+++..++.+. +.
T Consensus 46 ~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~------~~~I~~t~G~~~al~~~~~~l----~~---- 111 (387)
T PRK07683 46 VKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP------ESEIIVTIGASEAIDIAFRTI----LE---- 111 (387)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCChHHHHHHHHHHh----CC----
Confidence 3455555554444445445566788888999998777764210 115899999999988776542 11
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-+......++..+|.+++.+|+|+ .+.+|+++|++.+.+
T Consensus 112 -----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 160 (387)
T PRK07683 112 -----------PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITE 160 (387)
T ss_pred -----------CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCc
Confidence 111456666666677888888999999999975 467888999887753
No 108
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.81 E-value=0.018 Score=55.61 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=70.8
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|.......++.+.+.+|+.+-.|++-+ ...-++|+|+|+++.+++.+.. . +.-
T Consensus 89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~-------~~~v~it~G~~~al~l~~~~l~----~---------------~Gd 142 (430)
T PLN00145 89 SYSTCVGLLPARRAIAEYLSRDLPYELS-------TDDIYLTAGCAQAIEIIMSVLA----Q---------------PGA 142 (430)
T ss_pred CCCCCccCHHHHHHHHHHHhhccCCCCC-------hhhEEEeCCHHHHHHHHHHHhc----C---------------CCC
Confidence 3444445667777788888776665421 1268999999999988777531 0 111
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
.|+++.-+.+.....+.+.|++++.++++ +++.+|+++|++.+++
T Consensus 143 ~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 189 (430)
T PLN00145 143 NILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE 189 (430)
T ss_pred EEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc
Confidence 46667778888888899999999998874 4689999999887754
No 109
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=96.80 E-value=0.042 Score=52.36 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=71.2
Q ss_pred HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
+.+.+...+... ...+...+....+.+.+.+++..-.|++-. ...-++|+|||+++..++.+..+
T Consensus 53 ~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~ii~t~G~t~al~~~~~~l~~------- 118 (403)
T TIGR01265 53 AEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLT-------ADDVVLTSGCSQAIEICIEALAN------- 118 (403)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------HHHEEEecChHHHHHHHHHHhCC-------
Confidence 344444444332 223333333344555555555544343211 12588999999999888877421
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-+++....++...|++++.++++ +++.+|++.|++.+.+
T Consensus 119 ------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 168 (403)
T TIGR01265 119 ------------PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE 168 (403)
T ss_pred ------------CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc
Confidence 11145667778888888999999999999885 3578999999988754
No 110
>PRK07324 transaminase; Validated
Probab=96.79 E-value=0.0093 Score=56.30 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=53.4
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLR 276 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md 276 (297)
.-++|+|+|+++..++.+.. . ... .|+++.-++.+....++..|.+++.||+++ .+.+|
T Consensus 82 ~vi~t~G~~~al~~~~~~l~----~--------------~gd-~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d 142 (373)
T PRK07324 82 NILQTNGATGANFLVLYALV----E--------------PGD-HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPD 142 (373)
T ss_pred hEEEcCChHHHHHHHHHHhC----C--------------CCC-EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 47899999999988876641 1 012 456677888889999999999999999985 35689
Q ss_pred HHHHHHHHHH
Q psy1678 277 GDALEAAIEE 286 (297)
Q Consensus 277 ~~~L~~~i~~ 286 (297)
+++|++.+..
T Consensus 143 ~~~l~~~~~~ 152 (373)
T PRK07324 143 LDELRRLVRP 152 (373)
T ss_pred HHHHHHhCCC
Confidence 9999887753
No 111
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=96.78 E-value=0.0062 Score=56.50 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++++|.+++ .-++|+|+|+++..++.+. .. +.-.|+++.-.+....
T Consensus 58 ~lr~~ia~~~~~~~~---------~i~~~~G~~~~l~~~~~~l----~~---------------~gd~v~~~~p~y~~~~ 109 (346)
T TIGR01141 58 ELKQALADYYGVDPE---------QILLGNGSDEIIELLIRAF----LE---------------PGDAVLVPPPTYSMYE 109 (346)
T ss_pred HHHHHHHHHhCcChH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCCHHHHH
Confidence 455677788887543 4889999999886665543 11 1124566666666666
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
.++...|++++.+|++++|.+|++.|++.+.
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~ 140 (346)
T TIGR01141 110 ISAKIHGAEVVKVPLDEDGQLDLEDILVAID 140 (346)
T ss_pred HHHHHcCCeEEEeccCCCCCCCHHHHHHhcC
Confidence 7888899999999999999999999998763
No 112
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=96.78 E-value=0.0062 Score=56.66 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++.++.+++ ..++|+|+++++.+++.+..+ ... .|++++-.++...
T Consensus 64 ~lr~aia~~~~~~~~---------~I~it~G~~~al~~~~~~l~~------------------~gd-~vlv~~P~y~~~~ 115 (353)
T PRK05387 64 ALRQAIAAYYGLDPE---------QVFVGNGSDEVLAHAFLAFFN------------------HDR-PLLFPDITYSFYP 115 (353)
T ss_pred HHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHhcC------------------CCC-EEEEeCCCHHHHH
Confidence 466777888887664 589999999998887775411 012 3556666666667
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEA 282 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~ 282 (297)
..+...|++++.||.++++.+|+++|++
T Consensus 116 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 143 (353)
T PRK05387 116 VYAGLYGIPYEEIPLDDDFSIDVEDYLR 143 (353)
T ss_pred HHHHHcCCEEEEeecCCCCCCCHHHHHh
Confidence 7788999999999999899999999863
No 113
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=96.76 E-value=0.017 Score=54.46 Aligned_cols=85 Identities=14% Similarity=0.048 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
...+..++.+++++++|.++ .+++++|+++|..++.+. +. +.-.|++.+.
T Consensus 85 ~~~l~~~l~~~la~~~g~~~-----------~i~~tsG~~a~~~~~~~l----~~---------------~gd~vi~~~~ 134 (397)
T PRK06939 85 TQDLHKELEEKLAKFLGTED-----------AILYSSCFDANGGLFETL----LG---------------KEDAIISDAL 134 (397)
T ss_pred CcHHHHHHHHHHHHHhCCCc-----------EEEEcChHHHHHHHHHHh----CC---------------CCCEEEEEhh
Confidence 34566778899999999653 344445588887765432 11 1225777889
Q ss_pred CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 249 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 249 aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
.|++...++.++|.+++.++. +|+++|++.|++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~ 169 (397)
T PRK06939 135 NHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAK 169 (397)
T ss_pred hhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhh
Confidence 999999999999998887765 58999999987644
No 114
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=96.75 E-value=0.007 Score=56.97 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
...+++++.+|.+++ .-++|+|+++++...+.+. .. +.-.|++..-++....
T Consensus 75 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~~----~~---------------~gd~vli~~P~y~~~~ 126 (371)
T PRK05166 75 ALREAIAARTGVPAD---------RIILGNGSEDLIAVICRAV----LR---------------PGDRVVTLYPSFPLHE 126 (371)
T ss_pred HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence 466778888888754 5889999999876555432 11 1124556777777888
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
..++..|++++.||+++++.+|+++|++.+++
T Consensus 127 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~ 158 (371)
T PRK05166 127 DYPTMMGARVERVTVTPDLGFDLDALCAAVAR 158 (371)
T ss_pred HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc
Confidence 89999999999999998899999999988865
No 115
>PLN02187 rooty/superroot1
Probab=96.74 E-value=0.03 Score=54.53 Aligned_cols=99 Identities=8% Similarity=0.111 Sum_probs=70.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|...+....+.+.+.+|+.+..|++-+ ...-++|+|+++++..++.+.-+ +.-
T Consensus 103 ~Y~~~~G~~~lR~aiA~~~~~~~~~~~~-------~~~I~it~G~~~al~~~~~~l~~-------------------pGd 156 (462)
T PLN02187 103 SYGPGAGILPARRAVADYMNRDLPHKLT-------PEDIFLTAGCNQGIEIVFESLAR-------------------PNA 156 (462)
T ss_pred CCCCCCChHHHHHHHHHHHHHhcCCCCC-------cccEEEeCCHHHHHHHHHHHhcC-------------------CCC
Confidence 3444445566777788888877665421 12588999999998887775311 111
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
.|+++.-+.+.....+...|++++.++.. +++.+|+++|++++++
T Consensus 157 ~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~ 203 (462)
T PLN02187 157 NILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE 203 (462)
T ss_pred EEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCC
Confidence 35566677777788889999999999984 4689999999987743
No 116
>PRK07550 hypothetical protein; Provisional
Probab=96.74 E-value=0.028 Score=53.07 Aligned_cols=99 Identities=14% Similarity=-0.035 Sum_probs=71.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|...+...+++..+.+++.+..|.+-+. ..-++|+|+++++.+++.+.. . +.-
T Consensus 62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~----~---------------~gd 115 (386)
T PRK07550 62 LYGPVEGLPELREAYAAHYSRLYGAAISP-------EQVHITSGCNQAFWAAMVTLA----G---------------AGD 115 (386)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCc-------ceEEEecCcHHHHHHHHHHhc----C---------------CCC
Confidence 34344567788888999999887754221 258889999998877665531 0 111
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
.|++++-++......+...|++++.|+.|+ .+.+|++.|++.+++
T Consensus 116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~ 162 (386)
T PRK07550 116 EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP 162 (386)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc
Confidence 466777777777778888999999999974 467899999998864
No 117
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=96.73 E-value=0.025 Score=53.62 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=74.1
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
+.+.+...++ ....|........+-+.+.+|+.+..|++ -+. .-.-++|+|++++...++.+.-+
T Consensus 47 ~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~------~~~i~it~G~~~al~~~~~~l~~------- 112 (396)
T PRK09147 47 IKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDP------ATQVLPVNGSREALFAFAQTVID------- 112 (396)
T ss_pred HHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc------cceEEECCChHHHHHHHHHHHcC-------
Confidence 4444444443 22334444445567777888888888865 210 01467789999988766664311
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+ +.. .-.|++.+-.-.....++..+|.+++.||+++ ++.+|+++|++.+.+
T Consensus 113 ---~-----~~~-gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~ 165 (396)
T PRK09147 113 ---R-----DGP-GPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA 165 (396)
T ss_pred ---C-----CCC-CCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh
Confidence 0 000 22455666666667888999999999999974 368999999887753
No 118
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=96.72 E-value=0.017 Score=54.02 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.+..++.+++++++|.+ ..+++++|+++++.++.+. .. +.-.|++++..|
T Consensus 84 ~~~~~l~~~la~~~~~~-----------~~i~~~~g~~~~~~~l~~~----~~---------------~gd~V~~~~~~~ 133 (385)
T PRK05958 84 PAHEALEEELAEWFGAE-----------RALLFSSGYAANLAVLTAL----AG---------------KGDLIVSDKLNH 133 (385)
T ss_pred HHHHHHHHHHHHHhCCC-----------cEEEECcHHHHHHHHHHHh----CC---------------CCCEEEEeCccC
Confidence 34556777888888843 3788888999998766432 11 112566788999
Q ss_pred chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...++.+.|..++.+|. .|++.|++.++.
T Consensus 134 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~ 164 (385)
T PRK05958 134 ASLIDGARLSRARVRRYPH-----NDVDALEALLAK 164 (385)
T ss_pred HHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHh
Confidence 9999999999999988876 388999998865
No 119
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=96.67 E-value=0.027 Score=52.56 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
..+.+++.+|.+++ .-++|+|+++++..++.+. +. ... .|+++.-+......
T Consensus 64 lr~~ia~~~~~~~~---------~i~it~G~~~~l~~~~~~l----~~--------------~gd-~Vlv~~p~y~~~~~ 115 (351)
T PRK14807 64 LREELARYCSVVPT---------NIFVGNGSDEIIHLIMLAF----IN--------------KGD-VVIYPHPSFAMYSV 115 (351)
T ss_pred HHHHHHHHhCCCcc---------cEEEecCHHHHHHHHHHHh----cC--------------CCC-EEEEeCCChHHHHH
Confidence 34455556677653 5789999999887666542 11 012 34556666666777
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+++.|++|+++.+|++.|+++++.
T Consensus 116 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~ 146 (351)
T PRK14807 116 YSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK 146 (351)
T ss_pred HHHHcCCeEEEeecCCCCCCCHHHHHHHhhc
Confidence 8899999999999998899999999998864
No 120
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=96.67 E-value=0.03 Score=52.76 Aligned_cols=93 Identities=11% Similarity=0.122 Sum_probs=66.5
Q ss_pred chhhHHHHHHHHHHHHHcC----CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 167 PACTELEVVMLDWLGKMLD----LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg----~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
+....+.+.+.+|+.+..| .+++ .-++|+|+++++..++.+.- .. ++-.
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~---------~I~it~Ga~~al~~~~~~~~---~~---------------g~~~ 118 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPA---------NISVGNGSDELIRSLLIATC---LG---------------GEGS 118 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHH---------HEEEcCChHHHHHHHHHHHc---CC---------------CCCe
Confidence 4456677777777776643 3332 57889999998876655421 00 1113
Q ss_pred EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
|++.+-+......+++.+|++++.||+|+ ++.+|+++|++++++
T Consensus 119 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 163 (374)
T PRK02610 119 ILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ 163 (374)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence 55666777788889999999999999986 589999999999864
No 121
>PRK08363 alanine aminotransferase; Validated
Probab=96.64 E-value=0.02 Score=54.43 Aligned_cols=98 Identities=9% Similarity=0.000 Sum_probs=69.9
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|...+....++..+.+|+....|.+-+. ..-++|+|+|+++..++.+. .. +.-.
T Consensus 66 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~~----~~---------------~gd~ 119 (398)
T PRK08363 66 YGPSEGLPELREAIVKREKRKNGVDITP-------DDVRVTAAVTEALQLIFGAL----LD---------------PGDE 119 (398)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCCCh-------hhEEEeCCHHHHHHHHHHHh----CC---------------CCCE
Confidence 3344566778888888888776643210 25789999999988777653 11 1124
Q ss_pred EEecCCCcchHHHHHHhcCCceEEe-eCCC-CCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGL-PADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~V-p~d~-~~~md~~~L~~~i~~ 286 (297)
|++++-++.+...++..+|..++.+ +.++ .+.+|++.|++.+.+
T Consensus 120 Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~ 165 (398)
T PRK08363 120 ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE 165 (398)
T ss_pred EEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc
Confidence 6777888999999999999888887 5654 457999999887753
No 122
>PRK08068 transaminase; Reviewed
Probab=96.62 E-value=0.047 Score=51.67 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=76.5
Q ss_pred HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRV 225 (297)
Q Consensus 148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~ 225 (297)
+.+.+...++.. ...|...+....+.+.+.+|+.+..|.+-+ .. .-++|+||+++...++.+- ..
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~-------~~~~i~it~G~~~~l~~~~~~~----~~-- 116 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLD-------PETEVAILFGGKAGLVELPQCL----MN-- 116 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCccEEEcCCcHHHHHHHHHHh----CC--
Confidence 344554444432 123333445667888888888877786422 01 3678999998887654431 11
Q ss_pred HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
+.-.|++..-+++....++...|++++.||+++ .+.+|+++|++.+.+
T Consensus 117 -------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 166 (389)
T PRK08068 117 -------------PGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE 166 (389)
T ss_pred -------------CCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc
Confidence 112466788889899999999999999999985 468899999988853
No 123
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=96.61 E-value=0.047 Score=51.47 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+...+.+.+.+|+.+..|.+... ...-++|+|++++...++.+. .. +.-.|++..
T Consensus 68 G~~~lr~~ia~~~~~~~~~~~~~------~~~vi~t~G~~~~l~~~~~~~----~~---------------~gd~vlv~~ 122 (383)
T TIGR03540 68 GMLAYRQAVADWYKRRFGVELDP------ETEVLSLIGSKEGIAHIPLAF----VN---------------PGDIVLVPD 122 (383)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCC------CCeEEECCCcHHHHHHHHHHh----CC---------------CCCEEEEeC
Confidence 34567788889999888875320 012567899999887766542 11 112566777
Q ss_pred CCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
-++.....++..+|.+++.||+++ .+.+|+++|++++.+
T Consensus 123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~ 163 (383)
T TIGR03540 123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK 163 (383)
T ss_pred CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc
Confidence 788888889999999999999974 357899999988854
No 124
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=96.59 E-value=0.013 Score=58.06 Aligned_cols=130 Identities=6% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHhhcCCCCCCChHHHHH-HHHHHHHHHHHHHhhhhhcchhhhhccccC-CCCCCChHHHHHHHHHHHHHHHHHHHhc
Q psy1678 5 IHKKIKNGSIIMGDVNEFKD-FAKAMVDYVGNYLENIRDRYVQLQRFSQMG-SNIMGDVNEFKDFAKAMVDYVGNYLENI 82 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~f~~-~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~-~~~p~~~e~f~~~l~~v~d~i~~~~~~~ 82 (297)
+.+.|+.-+...-+...|.+ ..+.++||+++|+..++ +|+++++|+++ ...|.++....+.++++.+.+.+
T Consensus 10 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----- 82 (522)
T TIGR03799 10 LYRIFTVPEAPDSTLGRIEQKISQNLAGFLQEHIVAIE--KPLSEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVA----- 82 (522)
T ss_pred hhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccC--CCchhhhhcccccCCCCCCCChHHHHHHHHHHHHc-----
Confidence 44445433333223333433 46788999999998776 99999999974 55778888888888887777765
Q ss_pred CCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCC--CHHHHHHHHHHHhcc
Q psy1678 83 RDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN--SYPAIVADILSDSIA 157 (297)
Q Consensus 83 ~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~--~~~svl~d~l~~~lN 157 (297)
..+++.+|.++ ..++..+|- .-..+.++...+ + +..+.|..||. ..+..+.+|+..++.
T Consensus 83 ---~~~~~~hP~f~-g~~~~~~p~----~~~~l~~l~~~l-------N-~n~~~~~~spa~t~lE~~v~~wl~~l~~ 143 (522)
T TIGR03799 83 ---HSVHTASPSFI-GHMTSALPY----FMLPLSKLMVAL-------N-QNLVKIETSKAFTPLERQVLGMMHHLVY 143 (522)
T ss_pred ---CCCCCCCCCeE-EeccCCCch----HHHHHHHHHHHh-------c-CCcceeecCcchHHHHHHHHHHHHHHhc
Confidence 45667788887 555543331 111133332222 2 22455555553 566777888888763
No 125
>PRK06348 aspartate aminotransferase; Provisional
Probab=96.57 E-value=0.043 Score=51.89 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHH
Q psy1678 145 PAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR 224 (297)
Q Consensus 145 ~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~ 224 (297)
..++..++....+. ...|....+...+.+.+.+|+.+..|++-+. ..-++|+|+++++..++.+. ..
T Consensus 45 ~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-------~~i~it~G~~~al~~~~~~~----~~- 111 (384)
T PRK06348 45 ESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLSFKR-------NEIMATVGACHGMYLALQSI----LD- 111 (384)
T ss_pred HHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCh-------hhEEEcCChHHHHHHHHHHh----cC-
Confidence 34444444433222 2234433444578888889998877764321 25889999999988777764 11
Q ss_pred HHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 225 VKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-.+.....++..+|..++.||++ +++.+|+++|++.+++
T Consensus 112 --------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (384)
T PRK06348 112 --------------PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS 161 (384)
T ss_pred --------------CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence 11246678888888999999999999999974 3567999999988853
No 126
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=96.56 E-value=0.017 Score=55.17 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
+....+|..+.+++++++|.+.. -+++++||+++..++.+. +. +.-.|+++
T Consensus 67 ~~~~~~e~~~~~~la~~~g~~~~----------~i~~~sgt~al~~~l~~l----~~---------------~gd~Vl~~ 117 (416)
T PRK00011 67 EYVDVVEQLAIDRAKELFGAEYA----------NVQPHSGSQANAAVYFAL----LK---------------PGDTILGM 117 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCce----------eeecCCchHHHHHHHHHh----cC---------------CCCEEEEe
Confidence 45667888888999999999752 345456788887666543 11 11146677
Q ss_pred CCCcchHH---HHH--HhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSVE---RAG--LLGGVTIRGLPAD-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si~---Kaa--~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~ 286 (297)
..+|.+.. ... .-.|.+++.+++| +++.+|+++|+++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~ 163 (416)
T PRK00011 118 DLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE 163 (416)
T ss_pred ccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh
Confidence 77776532 111 2235678888888 4699999999999965
No 127
>KOG0630|consensus
Probab=96.55 E-value=0.011 Score=56.76 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCC----CCceEEEec
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDI----IANLVGYCS 246 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~----~~~~~i~~s 246 (297)
.|--.+-.|+..||.|-.+....+... ..|.-.-.-++.-|++.|-.... .|....+++. ...+++|+|
T Consensus 165 ~i~Gdanh~fgnLF~FAdsqiycsdPa--asfhadiadai~haVkLAikar~-----~~dhs~eG~~afaa~aaPt~YiS 237 (838)
T KOG0630|consen 165 SISGDANHVFGNLFHFADSQIYCSDPA--ASFHADIADAIGHAVKLAIKARC-----GGDHSLEGGIAFAALAAPTFYIS 237 (838)
T ss_pred hhccchHHHHHHHHhhcccccccCCch--hhhhhhhhhHHHHHHHhhhhhcc-----CCccccccccchHhhcCceEEEc
Confidence 344456789999999876422211111 22222222333444444432211 1111222221 246799999
Q ss_pred CCCcchH-HHHHHhcCCc---eEEeeC-CC---CCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 247 DQAHSSV-ERAGLLGGVT---IRGLPA-DD---SYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 247 ~~aH~Si-~Kaa~~lg~~---v~~Vp~-d~---~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
+..|.-. .-+|+-+|+. +..++- |. .||||...+++.|++|.++|+.|+++
T Consensus 238 ~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLil 296 (838)
T KOG0630|consen 238 EALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLIL 296 (838)
T ss_pred ccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEE
Confidence 9999876 4588999993 333322 22 46999999999999999999999875
No 128
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.033 Score=53.15 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=83.0
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+-+.+..+++.....+..+.+..++-+.+.+++.+..|+.-.. ...-++|+|++++++.++.+--+.
T Consensus 46 i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~------~~eiivt~Ga~~al~~~~~a~~~p------- 112 (393)
T COG0436 46 IIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP------EEEIIVTAGAKEALFLAFLALLNP------- 112 (393)
T ss_pred HHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCeEEEeCCHHHHHHHHHHHhcCC-------
Confidence 3444444444322144455667788888999999998854221 124899999999999998874221
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~~ 286 (297)
.. .|++++-.-.+......++|..++.||++ .++++|++.|+++|.+
T Consensus 113 -----------GD-eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ 162 (393)
T COG0436 113 -----------GD-EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP 162 (393)
T ss_pred -----------CC-EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc
Confidence 12 35567777788888999999999999986 4899999999999987
No 129
>KOG0628|consensus
Probab=96.51 E-value=0.007 Score=57.66 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhhhcchhhhh-ccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCC
Q psy1678 29 MVDYVGNYLENIRDRYVQLQR-FSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDT 107 (297)
Q Consensus 29 ~vd~i~~y~~~~~~~~v~~~v-~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~ 107 (297)
+.||..+-.+.=---.|.|-. ++.+|+.+|..+|+|++++.++...|.+ ++++|++|.+. +.|+..
T Consensus 17 IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~P--------GitHw~hP~fh-Ayfpa~---- 83 (511)
T KOG0628|consen 17 IADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMP--------GITHWQHPHFH-AYFPAG---- 83 (511)
T ss_pred HHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccC--------CCcccCCCcee-eEccCc----
Confidence 456665555443334567755 5779999999999999999999999987 89999999877 666654
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhccc
Q psy1678 108 PDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIAC 158 (297)
Q Consensus 108 g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~ 158 (297)
.++..+++++..... + ---|.|..|| ++++-++.|||..+++.
T Consensus 84 -~s~~siladmLs~~i------~-~vGFtW~ssPa~TELE~ivmDWL~kml~L 128 (511)
T KOG0628|consen 84 -NSYPSILADMLSGGI------G-CVGFTWASSPACTELEVIVMDWLGKMLGL 128 (511)
T ss_pred -cchHHHHHHHHhccc------c-cccceeecCcchHHHHHHHHHHHHHHhcC
Confidence 688999999865421 1 1246677777 46778889999987765
No 130
>KOG2040|consensus
Probab=96.50 E-value=0.012 Score=58.36 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=76.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc-CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ-GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t-sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
+.+-.+|=.++-.|||++-|++. -.|. ..|...-..+|.+.|.+...+ |. ..|-+.+
T Consensus 577 aqGY~~lf~~Le~~Lc~iTG~D~-----------~s~QPNsGA~GEYaGL~~IRaY~~~k----ge-------~hRnvCl 634 (1001)
T KOG2040|consen 577 AQGYQQLFTELEKDLCEITGFDS-----------FSLQPNSGAQGEYAGLRVIRAYLESK----GE-------GHRNVCL 634 (1001)
T ss_pred HhhHHHHHHHHHHHhheeecccc-----------eeecCCCCcccchhhHHHHHHHHHhc----cC-------CcceeEE
Confidence 34445566667779999999974 2222 345566677888888875432 21 2355677
Q ss_pred ecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
.+-.+|-....+|.+.|++|+.|.+|.+|-+|..+|+++-++-.
T Consensus 635 IPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~ 678 (1001)
T KOG2040|consen 635 IPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHK 678 (1001)
T ss_pred EeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999887654
No 131
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.50 E-value=0.042 Score=56.01 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678 177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA 256 (297)
Q Consensus 177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka 256 (297)
-+..|+++|.+.+ -.+|.|.|-||..++.++-. +.-.|++...+|-|+..|
T Consensus 201 e~~aA~~fgAd~t----------yfvvNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~~a 251 (713)
T PRK15399 201 EEYIARTFGAEQS----------YIVTNGTSTSNKIVGMYAAP-------------------AGSTLLIDRNCHKSLAHL 251 (713)
T ss_pred HHHHHHHhCCCcE----------EEEeCChHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHH
Confidence 3577999999875 56789999999988887521 112577899999999999
Q ss_pred HHhcCCceEEeeCC--CC---CCcCH-----HHHHHHHHHHH
Q psy1678 257 GLLGGVTIRGLPAD--DS---YKLRG-----DALEAAIEEDL 288 (297)
Q Consensus 257 a~~lg~~v~~Vp~d--~~---~~md~-----~~L~~~i~~~~ 288 (297)
+.+.|+..+.++.. +. |.+++ +.++++|++.-
T Consensus 252 Lilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p 293 (713)
T PRK15399 252 LMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATT 293 (713)
T ss_pred HHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCC
Confidence 99999988887654 22 34555 88888887643
No 132
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=96.48 E-value=0.018 Score=54.48 Aligned_cols=83 Identities=12% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++.+|.+++ .-++|+|+++++..++.+. .. +.-.|++++-......
T Consensus 90 ~lr~~ia~~~~~~~~---------~I~~t~Ga~~~i~~~~~~~----~~---------------~gd~Vlv~~P~y~~y~ 141 (380)
T PLN03026 90 RLRAALAEDSGLESE---------NILVGCGADELIDLLMRCV----LD---------------PGDKIIDCPPTFGMYV 141 (380)
T ss_pred HHHHHHHHHhCcChh---------hEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence 466778888888754 5789999999987766542 11 1113555656666667
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
..++..|++++.+|.++++.+|++.|+++++
T Consensus 142 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~ 172 (380)
T PLN03026 142 FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE 172 (380)
T ss_pred HHHHHcCCEEEEeecCCCCCcCHHHHHHHHh
Confidence 7888899999999998889999999998884
No 133
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=96.46 E-value=0.028 Score=53.31 Aligned_cols=93 Identities=23% Similarity=0.090 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
....+.++.+.+++++|.+.+ ..+||+|||++|..|+.++|... .++.+++....
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~---------~v~~~~sgsea~~~al~~~~~~~----------------~~~~ii~~~~~ 131 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLD---------KVFFVNSGTEAVEAALKLARAYT----------------GRKKIISFEGA 131 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCC---------EEEEcCcHHHHHHHHHHHHHHHc----------------CCCeEEEECCC
Confidence 456777888899999984322 48899999999999999998641 12335556667
Q ss_pred CcchHHHHHHhcC------------CceEEeeCCC------CCCcCHHHHHHHHHH
Q psy1678 249 AHSSVERAGLLGG------------VTIRGLPADD------SYKLRGDALEAAIEE 286 (297)
Q Consensus 249 aH~Si~Kaa~~lg------------~~v~~Vp~d~------~~~md~~~L~~~i~~ 286 (297)
-|.+..-+..+.+ .+++.+|.+. +...|++.|++.+++
T Consensus 132 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 187 (413)
T cd00610 132 YHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE 187 (413)
T ss_pred cCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc
Confidence 7777665554432 2467777763 345588989888864
No 134
>PRK09105 putative aminotransferase; Provisional
Probab=96.40 E-value=0.017 Score=54.48 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+-+++.+|.+++ .-++|+|+++++..++.+. .. +.-.|++++-+|+....
T Consensus 83 Lr~aia~~~~v~~e---------~I~it~Gs~~ai~~~~~~l----~~---------------~gd~Vli~~P~y~~~~~ 134 (370)
T PRK09105 83 LRTLFAAQEGLPAD---------HVMAYAGSSEPLNYAVLAF----TS---------------PTAGLVTADPTYEAGWR 134 (370)
T ss_pred HHHHHHHHhCcChh---------hEEEcCChHHHHHHHHHHH----cC---------------CCCEEEEeCCChHHHHH
Confidence 44556777888764 5889999999988777653 11 11246667788888999
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAA 283 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~ 283 (297)
++...|.+++.||.++++.+|++.|++.
T Consensus 135 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~ 162 (370)
T PRK09105 135 AADAQGAPVAKVPLRADGAHDVKAMLAA 162 (370)
T ss_pred HHHHcCCeEEEecCCCCCCCCHHHHHhc
Confidence 9999999999999998899999999765
No 135
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=96.39 E-value=0.051 Score=51.48 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=75.1
Q ss_pred HHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCC-CCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678 147 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGK-GGGVIQGTASEATLVALLGAKAKTMQRV 225 (297)
Q Consensus 147 vl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~-~~G~~tsGGT~anl~Al~~AR~~~~~~~ 225 (297)
.+.+.+...+. ....|....+...+-+.+.+|+.+..|++... .. ..-++|+|++++...++.+..+
T Consensus 45 ~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~i~it~Ga~~al~~~~~~l~~------ 112 (393)
T TIGR03538 45 FVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGV-----DPERHVLPVNGTREALFAFAQAVIN------ 112 (393)
T ss_pred HHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccC-----CCCceEEECCCcHHHHHHHHHHHcC------
Confidence 34444444433 22234333334567777888998887876210 01 1367899999988776665311
Q ss_pred HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE 286 (297)
Q Consensus 226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~ 286 (297)
.| ....|++.+-..+.....+..+|.+++.||++++ +.+|+++|++++.+
T Consensus 113 --~g---------d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (393)
T TIGR03538 113 --PG---------QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR 164 (393)
T ss_pred --CC---------CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence 01 1223566666777778888999999999999743 57899999988754
No 136
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=96.39 E-value=0.016 Score=54.54 Aligned_cols=82 Identities=7% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+.+++.+|.+++ .-++|+|+++++..++.+.- . +.-.|++.+-+......
T Consensus 69 Lr~aia~~~~~~~~---------~I~vt~Gs~e~i~~~~~~l~----~---------------~gd~vlv~~P~y~~~~~ 120 (366)
T PRK01533 69 LRQTIANKLHVKME---------QVLCGSGLDEVIQIISRAVL----K---------------AGDNIVTAGATFPQYRH 120 (366)
T ss_pred HHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcHHHHHH
Confidence 55566777788764 58899999999887766531 1 11146667778888899
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|++++.||.+ ++.+|+++|++++++
T Consensus 121 ~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~ 150 (366)
T PRK01533 121 HAIIEGCEVKEVALN-NGVYDLDEISSVVDN 150 (366)
T ss_pred HHHHcCCEEEEeecC-CCCcCHHHHHHHhCc
Confidence 999999999999997 457999999988754
No 137
>PLN02724 Molybdenum cofactor sulfurase
Probab=96.38 E-value=0.017 Score=60.17 Aligned_cols=127 Identities=10% Similarity=-0.046 Sum_probs=77.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHhcc---cccc-ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678 133 KFHAYFPTANSYPAIVADILSDSIA---CIGF-TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE 208 (297)
Q Consensus 133 ~~~g~~~s~~~~~svl~d~l~~~lN---~n~~-~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~ 208 (297)
.||.|-.+++..+..+.+.+..++. .|.. .+..+..++.+-.++.+.+++++|.++.. ..-+||+|+|+
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~-------~~VvFtsnaT~ 108 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD-------YACVFTSGATA 108 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc-------eEEEEeCChHH
Confidence 4888876655444555555544332 2222 22334444544556899999999996531 13699999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCC--------CCCCcCH
Q psy1678 209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPAD--------DSYKLRG 277 (297)
Q Consensus 209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d--------~~~~md~ 277 (297)
|+.+..... . +. +.-.|+++...|.|+.-...+ .|+.++.||++ +.+.++.
T Consensus 109 alnlva~~l-----~--------~~-----~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~ 170 (805)
T PLN02724 109 ALKLVGETF-----P--------WS-----SESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVV 170 (805)
T ss_pred HHHHHHHHC-----C--------CC-----CCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhcccccccccccccc
Confidence 987653321 0 10 112466788999888744333 48899999987 4555654
Q ss_pred --HHHHHHH
Q psy1678 278 --DALEAAI 284 (297)
Q Consensus 278 --~~L~~~i 284 (297)
++|++.+
T Consensus 171 ~~~~l~~~~ 179 (805)
T PLN02724 171 KSRGLQRRN 179 (805)
T ss_pred chhhhhhhh
Confidence 6666654
No 138
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=96.38 E-value=0.038 Score=53.88 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=63.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|..++...++|+.+. +++|.. ..++|+|||+|+..++.+. +. ...
T Consensus 73 ~Y~~~~g~~~Lreaia----~~~~~~-----------~vv~t~ggt~A~~~~~~al----l~--------------pGD- 118 (460)
T PRK13238 73 AYAGSRSYYRLEDAVK----DIFGYP-----------YTIPTHQGRAAEQILFPVL----IK--------------KGD- 118 (460)
T ss_pred ccCCCCCHHHHHHHHH----HHhCCC-----------cEEECCCHHHHHHHHHHHh----CC--------------CCC-
Confidence 5677777778887554 555653 3799999999999886653 11 123
Q ss_pred EEEecCCCcchHHHH-HHhcCCceEEeeCCC----------CCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERA-GLLGGVTIRGLPADD----------SYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~ 286 (297)
|+.+ ..||...++ ..+.|..++.||+++ .|.+|+++|++.|.+
T Consensus 119 -Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~ 172 (460)
T PRK13238 119 -VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEE 172 (460)
T ss_pred -EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhh
Confidence 3344 457766554 567899999999863 245999999999975
No 139
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=96.32 E-value=0.071 Score=54.43 Aligned_cols=83 Identities=10% Similarity=0.112 Sum_probs=63.1
Q ss_pred HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678 177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA 256 (297)
Q Consensus 177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka 256 (297)
-+..|+++|.+.+ -.+|.|.|-||..++.++- . +.-.|++...+|-|+..|
T Consensus 201 e~~AA~~fgAd~t----------yfvvNGTS~~n~av~~a~~----~---------------~Gd~VLvdRN~HKSv~ha 251 (714)
T PRK15400 201 EEYIARVFNADRS----------YMVTNGTSTANKIVGMYSA----P---------------AGSTVLIDRNCHKSLTHL 251 (714)
T ss_pred HHHHHHHhCCCcE----------EEEeCchHHHHHHHHHHhc----C---------------CCCEEEeecccHHHHHHH
Confidence 3578999999875 5678999999998777641 1 112577899999999999
Q ss_pred HHhcCCceEEeeCC--CC---CCcC-----HHHHHHHHHHHH
Q psy1678 257 GLLGGVTIRGLPAD--DS---YKLR-----GDALEAAIEEDL 288 (297)
Q Consensus 257 a~~lg~~v~~Vp~d--~~---~~md-----~~~L~~~i~~~~ 288 (297)
..+.|+..+.++++ +. |.++ ++.++++|++.-
T Consensus 252 Lilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p 293 (714)
T PRK15400 252 MMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETP 293 (714)
T ss_pred HHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCc
Confidence 99999988887654 22 2445 899999997643
No 140
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=96.32 E-value=0.052 Score=52.96 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+...+-+.+.+|+.+.+|.+-.. ....-++|+|+++++...+.+-.+ +.-.|++.+
T Consensus 87 G~~~LR~aiA~~l~~~~~~~~~v-----~~~~Iiit~Ga~~al~~l~~~l~~-------------------pGd~Vlv~~ 142 (468)
T PLN02450 87 GLPAFKNALAEFMSEIRGNKVTF-----DPNKLVLTAGATSANETLMFCLAE-------------------PGDAFLLPT 142 (468)
T ss_pred ChHHHHHHHHHHHHHhhCCCCCc-----ChHHeEEccChHHHHHHHHHHhCC-------------------CCCEEEECC
Confidence 33456677888888876643100 012588899999987766664211 112455666
Q ss_pred CCcchHHHHHH-hcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCCC
Q psy1678 248 QAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 248 ~aH~Si~Kaa~-~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G~ 292 (297)
-....+...+. ..|.+++.||++ +.+.+|+++|++++++..++|.
T Consensus 143 P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~ 190 (468)
T PLN02450 143 PYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNL 190 (468)
T ss_pred CCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCC
Confidence 66667777777 489999999985 4678899999999987665553
No 141
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=96.29 E-value=0.09 Score=51.23 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccc---c-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 145 PAIVADILSDSIAC---I-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 145 ~svl~d~l~~~lN~---n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.......+...+.. . ...+....+...+=..+.+++....|..-+. ..-++|+|+++|..+.+.+-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~-------~~IiiT~G~q~al~l~~~~l--- 175 (459)
T COG1167 106 LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEP-------EQIVITSGAQQALDLLLRLL--- 175 (459)
T ss_pred HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCc-------CeEEEeCCHHHHHHHHHHHh---
Confidence 34455555555422 2 3344444566667777888888788886431 25889999988877444331
Q ss_pred HHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 221 TMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
. .+.-.|++-+-+++....+...+|++++.||+|+ ..||+++|++.+++.
T Consensus 176 -~---------------~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~ 225 (459)
T COG1167 176 -L---------------DPGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPEALEEALAQW 225 (459)
T ss_pred -C---------------CCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhc
Confidence 1 1223677889999999999999999999999995 579999999998764
No 142
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=96.28 E-value=0.054 Score=53.33 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=70.6
Q ss_pred CchhhHHHHHHHHHHHHHcC----CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 166 SPACTELEVVMLDWLGKMLD----LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg----~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
..+...+-+.+.+|+.+..| ++++ .-++|+|+++++.+.+.+--+ +.-
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe---------~Ivit~Ga~~al~~l~~~l~~-------------------pGD 144 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPE---------RVVMSGGATGANETIMFCLAD-------------------PGD 144 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChh---------hEEEccchHHHHHHHHHHhCC-------------------CCC
Confidence 33445676778888888777 3332 588999999998877765311 112
Q ss_pred EEEecCCCcchHHHHHHh-cCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCC
Q psy1678 242 VGYCSDQAHSSVERAGLL-GGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~-lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G 291 (297)
.|++..-....+...+.. .|++++.||++ +++++|+++|++++++..+.+
T Consensus 145 ~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~ 197 (496)
T PLN02376 145 VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESN 197 (496)
T ss_pred EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcC
Confidence 466777788888887774 79999999996 468999999998886654433
No 143
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=96.25 E-value=0.073 Score=49.42 Aligned_cols=79 Identities=9% Similarity=0.151 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+++++.+|.+++ .-++|+|+++++...+.+ ++ | + .|+++.-.+..+..
T Consensus 60 lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~-----~~-----g----------d-~V~v~~P~y~~~~~ 109 (337)
T PRK03967 60 LREAIAEFYGLDAE---------NIAVGNGSDELISYLVKL-----FE-----G----------K-HIVITPPTFGMYSF 109 (337)
T ss_pred HHHHHHHHhCcCcc---------eEEEcCCHHHHHHHHHHH-----hC-----C----------C-eEEEeCCChHHHHH
Confidence 44566666777653 588999999987543322 11 1 1 35566677777778
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAI 284 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i 284 (297)
++...|++++.|++++++.+|++.|++.+
T Consensus 110 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~~ 138 (337)
T PRK03967 110 YAKLNGIPVIDVPLKEDFTIDGERIAEKA 138 (337)
T ss_pred HHHHcCCeEEEeecCCCCCcCHHHHHHhc
Confidence 88999999999999988999999998754
No 144
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=96.24 E-value=0.025 Score=52.70 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
++.+.+++.+|.+++ .-++ |+|+++++..++.+. .. ... .|+++.-.++.+
T Consensus 73 ~lr~~ia~~~~~~~~---------~i~~~~~Ga~~~i~~~~~~~----~~--------------~gd-~vlv~~p~y~~~ 124 (361)
T PRK00950 73 ELREALSKYTGVPVE---------NIIVGGDGMDEVIDTLMRTF----ID--------------PGD-EVIIPTPTFSYY 124 (361)
T ss_pred HHHHHHHHHhCCCHH---------HEEEeCCCHHHHHHHHHHHh----cC--------------CCC-EEEEcCCChHHH
Confidence 345566777788653 4667 677777665554432 11 012 355666556666
Q ss_pred HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
..++...|++++.+|.++++.+|+++|++.+.
T Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 156 (361)
T PRK00950 125 EISAKAHGAKPVYAKREEDFSLDVDSVLNAIT 156 (361)
T ss_pred HHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc
Confidence 77888999999999988888999999998885
No 145
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=96.22 E-value=0.058 Score=51.85 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
..+-+.+.+|+..-++-++ .-++|+|++++..+++.+.-+ +.-.|++.+-+
T Consensus 124 ~~lr~~ia~~~~~~~~~~~----------~Iiit~G~~~al~~~~~~l~~-------------------pgd~Vlv~~P~ 174 (431)
T PRK15481 124 PELHAWAARWLRDDCPVAF----------EIDLTSGAIDAIERLLCAHLL-------------------PGDSVAVEDPC 174 (431)
T ss_pred HHHHHHHHHHHhhccCCcC----------eEEEecCcHHHHHHHHHHhCC-------------------CCCEEEEeCCC
Confidence 3455556666655433222 588999999988777765311 11145667778
Q ss_pred cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.+....++...|++++.||+|++| +|+++|+++++.
T Consensus 175 y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~ 210 (431)
T PRK15481 175 FLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQ 210 (431)
T ss_pred cHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc
Confidence 888999999999999999998765 999999998864
No 146
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.20 E-value=0.069 Score=51.06 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=74.5
Q ss_pred HHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 149 ADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 149 ~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
.+.+...++.. ...|........+-+.+.+|+.+..|++-+ ...-++|+|+++++..++.+.-+
T Consensus 55 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~I~it~G~~~al~~~~~~l~~-------- 119 (409)
T PLN00143 55 EDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS-------PDDVYLTLGCKHAAEIIIKVLAR-------- 119 (409)
T ss_pred HHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------HhhEEEecChHHHHHHHHHHHcC--------
Confidence 34444444432 223433344555666788888887776422 12588999999998887665311
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 286 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~ 286 (297)
+.-.|+++.-+.+.+...+...|.+++.++++ +++++|+++|++++++
T Consensus 120 -----------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 169 (409)
T PLN00143 120 -----------PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE 169 (409)
T ss_pred -----------CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc
Confidence 11245667777888888999999999999985 3568999999887743
No 147
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=96.14 E-value=0.066 Score=50.21 Aligned_cols=94 Identities=14% Similarity=-0.031 Sum_probs=68.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
+....+.+.+.+|+.+..|++-+ ...-++|+|+++++..++.+.-+ +.-.|++.
T Consensus 65 ~g~~~lr~aia~~~~~~~~~~~~-------~~~I~it~G~~~~l~~~~~~~~~-------------------~gd~v~v~ 118 (368)
T PRK03317 65 RDAVALRADLAAYLTAQTGVGLT-------VENVWAANGSNEILQQLLQAFGG-------------------PGRTALGF 118 (368)
T ss_pred CchHHHHHHHHHHhhhhccCCCC-------hhhEEECCCHHHHHHHHHHHhcC-------------------CCCEEEEe
Confidence 34556777788888888776421 12588899999988776665311 11135556
Q ss_pred CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.-+......++...|.+++.+|.++++.+|+++|++++++
T Consensus 119 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (368)
T PRK03317 119 VPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE 158 (368)
T ss_pred CCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc
Confidence 6677777888888999999998888889999999998864
No 148
>PRK07681 aspartate aminotransferase; Provisional
Probab=96.14 E-value=0.12 Score=49.01 Aligned_cols=113 Identities=7% Similarity=0.071 Sum_probs=76.0
Q ss_pred HHHHHHHhccccc-cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIACIG-FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 148 l~d~l~~~lN~n~-~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
+.+.+...++... ..+. .+....+-+.+.+|+.+..|++-+. ...-++|+|++++...++.+. +.
T Consensus 50 ~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~~----~~--- 115 (399)
T PRK07681 50 VREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA------DKEVLLLMGSQDGLVHLPMVY----AN--- 115 (399)
T ss_pred HHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC------CCeEEECCCcHHHHHHHHHHh----CC---
Confidence 4555555554321 1121 2445567777888988887764220 025788999999887766542 11
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~ 286 (297)
+.-.|++.+-+++.....+..+|.+++.||+|++ +.+|+++|++++..
T Consensus 116 ------------~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~ 165 (399)
T PRK07681 116 ------------PGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD 165 (399)
T ss_pred ------------CCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc
Confidence 1124667778899999999999999999999854 57899999888753
No 149
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=96.14 E-value=0.059 Score=51.38 Aligned_cols=123 Identities=15% Similarity=0.066 Sum_probs=72.0
Q ss_pred CCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
.+.+-.|+|.... +.....+.+.+...-...+.....+ .......++-+.+++++|.+. .+|+++|+
T Consensus 49 ~~~sn~ylgl~~~-p~v~~a~~~~~~~~~~~~~~s~~~~-~~~~~~~~le~~la~~~g~~~-----------~~~~~SG~ 115 (406)
T PRK13393 49 VWCSNDYLGMGQH-PAVLAAMHEALDTCGAGAGGTRNIS-GTNHYHVLLEAELADLHGKEA-----------ALLFTSGY 115 (406)
T ss_pred EeecccccCCCCC-HHHHHHHHHHHHHcCCCCccccccc-CChHHHHHHHHHHHHHhCCCc-----------EEEeCCcH
Confidence 4566668876543 2233333444433211111111111 112233344467788888642 56666678
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 208 EATLVALLG-AKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 208 ~anl~Al~~-AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+||..|+.+ ++.. +.-+|++....|.|+..++...|..++.+|. .|++.|++.++.
T Consensus 116 ~An~~ai~~l~~~~------------------~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~ 172 (406)
T PRK13393 116 VSNWAALSTLGSRL------------------PGCVILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSD 172 (406)
T ss_pred HHHHHHHHHhhcCC------------------CCCEEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHh
Confidence 899999985 3210 1125777888999999999988887777764 377888887764
No 150
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=96.09 E-value=0.025 Score=52.74 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+++++.+|.+++ .-++|+|+++++..++.+. .. +.-.|+++.-+......
T Consensus 69 lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~~----~~---------------~gd~v~~~~p~y~~~~~ 120 (359)
T PRK03158 69 LRTKVAKHLGVDEE---------QLLFGAGLDEVIQMISRAL----LN---------------PGTNTVMAEPTFSQYRH 120 (359)
T ss_pred HHHHHHHHhCCCHH---------HEEECCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCHHHHHH
Confidence 45566777777653 5889999999886544432 11 11246666667777888
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+++.+|++ ++.+|++.|++.+.+
T Consensus 121 ~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~ 150 (359)
T PRK03158 121 NAIIEGAEVREVPLK-DGGHDLEAMLKAIDE 150 (359)
T ss_pred HHHHcCCeEEEEecC-CCCcCHHHHHHhcCC
Confidence 899999999999998 688999999887743
No 151
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=96.09 E-value=0.1 Score=49.54 Aligned_cols=117 Identities=13% Similarity=0.025 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCC--CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678 146 AIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDL--PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM 222 (297)
Q Consensus 146 svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~--~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~ 222 (297)
..+.+.+...+... ...|....+...+=+.+.+|+.+.-+. .++ .-..++|+|++++...++.+... .
T Consensus 47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-------~i~v~iT~Ga~~al~~~~~~l~~--~ 117 (396)
T PRK09257 47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAG-------RVATVQTPGGTGALRVGADFLKR--A 117 (396)
T ss_pred HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccC-------eEEEEecCCccHHHHHHHHHHHH--h
Confidence 34555555555322 223444445555656667776544322 111 01248999999999888754210 0
Q ss_pred HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC-C-CCCCcCHHHHHHHHHH
Q psy1678 223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~-d-~~~~md~~~L~~~i~~ 286 (297)
. +.-.|++.+-+-+....+++.+|++++.||+ + +++.+|+++|++.+++
T Consensus 118 ~---------------pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~ 168 (396)
T PRK09257 118 F---------------PDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQ 168 (396)
T ss_pred C---------------CCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHh
Confidence 0 1124667777888889999999999999998 3 3579999999998874
No 152
>PRK06107 aspartate aminotransferase; Provisional
Probab=96.06 E-value=0.12 Score=49.19 Aligned_cols=112 Identities=19% Similarity=0.121 Sum_probs=72.5
Q ss_pred HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678 148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE 227 (297)
Q Consensus 148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~ 227 (297)
+.+.+...+......|....+..++...+.+|+.+.+|.+-.. ..-++|+|+++++..++.+. ..
T Consensus 51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~~----~~---- 115 (402)
T PRK06107 51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD-------NEITVGGGAKQAIFLALMAT----LE---- 115 (402)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEeCCHHHHHHHHHHHh----cC----
Confidence 4455555554333334333344567778889999888874211 25889999999988887542 11
Q ss_pred hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678 228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 285 (297)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~ 285 (297)
+.-.|++++-.++....+....|..++.|++++ .+.+|+++|++.+.
T Consensus 116 -----------~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 164 (402)
T PRK06107 116 -----------AGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT 164 (402)
T ss_pred -----------CCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC
Confidence 112456666666666677777777777888753 46789999888775
No 153
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=96.05 E-value=0.075 Score=50.68 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++++|.++ .++++.||++|..++.+.-.. .+.-+|+++...|+|+.
T Consensus 95 ~Le~~la~~~g~~~-----------~i~~~sG~~a~~~~i~~l~~~-----------------~~g~~vi~~~~~h~s~~ 146 (410)
T PRK13392 95 LLERELADLHGKES-----------ALLFTSGYVSNDAALSTLGKL-----------------LPGCVILSDALNHASMI 146 (410)
T ss_pred HHHHHHHHHhCCCC-----------EEEECcHHHHHHHHHHHHhcC-----------------CCCCEEEEehhhhHHHH
Confidence 34467888888642 566666799998888743110 01125677777999999
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
.++...|..++.++.+ |.+.|++.+++.
T Consensus 147 ~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~ 174 (410)
T PRK13392 147 EGIRRSGAEKQVFRHN-----DLADLEEQLASV 174 (410)
T ss_pred HHHHHcCCeEEEEeCC-----CHHHHHHHHHhc
Confidence 9999889888777543 566777777643
No 154
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=96.04 E-value=0.035 Score=52.29 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCC----CcCCCCceEEEec
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWK----DSDIIANLVGYCS 246 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~----~~~~~~~~~i~~s 246 (297)
.+-.++.+++++++|.+ ..++|+|||+++..++.+.-.. |..+. -.+..+.-.|+++
T Consensus 45 ~~~~~~~~~~a~~~g~~-----------~~~~~~g~t~al~~al~al~~~--------Gd~~~~~~~~~s~~~~~eVi~~ 105 (363)
T TIGR01437 45 ELVNKTGEYIANLLGVE-----------DAVIVSSASAGIAQSVAAVITR--------GNRYLVENLHDSKIEVNEVVLP 105 (363)
T ss_pred HHHHHHHHHHHHhhCCC-----------eEEEEcCHHHHHHHHHHHHhcC--------CCcchhhcccccccccceEEEE
Confidence 45566888999999975 2699999999999999876221 11000 0000111134455
Q ss_pred CCCcch-----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 247 DQAHSS-----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 247 ~~aH~S-----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
. .|+. +..++.+.|..++.+++ ++.+|+++|+++|.+.+
T Consensus 106 ~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t 149 (363)
T TIGR01437 106 K-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKT 149 (363)
T ss_pred C-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhc
Confidence 4 6664 34566778888887776 46799999999998655
No 155
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.03 E-value=0.09 Score=50.82 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=65.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|..++...++|+.+ ++.+|.+ ..++|+|||+|+..++.+. .. ...
T Consensus 48 ~Y~~~~g~~~Leeai----a~~~g~~-----------~vv~t~~Gt~Al~la~~al----~~--------------pGD- 93 (431)
T cd00617 48 AYAGSKSFYDLEDAV----QDLFGFK-----------HIIPTHQGRGAENILFSIL----LK--------------PGR- 93 (431)
T ss_pred ccCCCCCHHHHHHHH----HHHHCCC-----------eEEEcCCHHHHHHHHHHHh----CC--------------CCC-
Confidence 477788888888865 4556775 3799999999999888653 11 112
Q ss_pred EEEecCCCcchHHH-HHHhcCCceEEeeCCC----------CCCcCHHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVER-AGLLGGVTIRGLPADD----------SYKLRGDALEAAIEED 287 (297)
Q Consensus 242 ~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~~ 287 (297)
+| . ...||...+ +..+.|..++.+++++ .|.||+++|++.|.+.
T Consensus 94 ~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~ 148 (431)
T cd00617 94 TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV 148 (431)
T ss_pred EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc
Confidence 33 3 367886655 4567899999999973 3559999999999753
No 156
>PRK08175 aminotransferase; Validated
Probab=96.03 E-value=0.21 Score=47.42 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=69.0
Q ss_pred cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..|....+...+.+.+.+|+.+..|++-+. ...-++|+|++++....+.+. .. +.
T Consensus 61 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~i~~t~G~~~~l~~~~~~~----~~---------------~g 115 (395)
T PRK08175 61 HGYSTSRGIPRLRRAISRWYQDRYDVDIDP------ESEAIVTIGSKEGLAHLMLAT----LD---------------HG 115 (395)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEccCcHHHHHHHHHHh----CC---------------CC
Confidence 334444446678888999999887875210 014788999998876654332 11 11
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
-.|++++-++.+...++...|.+++.||+|++ ..++++|++++++
T Consensus 116 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~l~~~l~~ 160 (395)
T PRK08175 116 DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG-VDFFNELERAIRE 160 (395)
T ss_pred CEEEEcCCCCcchHHHHHHcCCeEEEEecccC-CCcHHHHHHHHhh
Confidence 24667788888888888899999999999864 3458888888764
No 157
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=95.94 E-value=0.13 Score=48.24 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
....+-.++.+++++++|.+. .+++++|+++++.++.+.. . ... .|+++.
T Consensus 75 g~~~l~~~l~~~l~~~~g~~~-----------~i~~~sG~~a~~~a~~~~~----~--------------~gd-~vi~~~ 124 (385)
T TIGR01825 75 GTLRLHEELEEKLAKFKKTEA-----------ALVFQSGFNTNQGVLSALL----R--------------KGD-IVLSDE 124 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHhC----C--------------CCC-EEEEEc
Confidence 445566778889999998643 3444555889887776531 1 112 566788
Q ss_pred CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
..|.+...++.+.|..++.++ .+|++.|++.|.+..
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~ 160 (385)
T TIGR01825 125 LNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENP 160 (385)
T ss_pred cccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhc
Confidence 899999999888888776653 688999998887643
No 158
>PRK15029 arginine decarboxylase; Provisional
Probab=95.93 E-value=0.15 Score=52.54 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
.-+..|+++|.+.+ -.+|.|.|.+|+.++.++-. +.-.|++...+|-|+..
T Consensus 210 Aq~~aA~~fgA~~t----------~FlvNGST~gn~a~i~a~~~-------------------~gd~Vlv~RN~HKSv~~ 260 (755)
T PRK15029 210 SEKYAARVFGADRS----------WSVVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIEQ 260 (755)
T ss_pred HHHHHHHHhCCCcE----------EEEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHH
Confidence 34688999999875 56789999999966665411 11257789999999999
Q ss_pred HHHhcCCceEEeeCC--CC---CCcC-----HHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPAD--DS---YKLR-----GDALEAAIEE 286 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d--~~---~~md-----~~~L~~~i~~ 286 (297)
|+.+.|+..+.++.. +. +.++ ++.++++|++
T Consensus 261 al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~ 301 (755)
T PRK15029 261 GLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE 301 (755)
T ss_pred HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHh
Confidence 999999988877643 22 3455 9999999976
No 159
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=95.88 E-value=0.1 Score=48.29 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS 252 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S 252 (297)
..++.+.+++++|.++ .+++++|+++++.++.+. .. +.-.|+++...|.+
T Consensus 63 ~~~l~~~la~~~~~~~-----------~i~~~~G~~~~~~~l~~~----~~---------------~gd~v~~~~~~~~~ 112 (360)
T TIGR00858 63 HEELEEELAEWKGTEA-----------ALLFSSGYLANVGVISAL----VG---------------KGDLILSDALNHAS 112 (360)
T ss_pred HHHHHHHHHHHhCCCC-----------EEEECchHHHHHHHHHHh----CC---------------CCCEEEEEccccHH
Confidence 3345566677777542 566677788888655433 11 11246678899999
Q ss_pred HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 253 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
...++.+.|.+++.++. +|++.|++.+++
T Consensus 113 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~ 141 (360)
T TIGR00858 113 LIDGCRLSGARVRRYRH-----NDVEHLERLLEK 141 (360)
T ss_pred HHHHHHhcCCceEEecC-----CCHHHHHHHHHH
Confidence 99999999999888874 689999998865
No 160
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=95.88 E-value=0.1 Score=51.49 Aligned_cols=97 Identities=9% Similarity=-0.021 Sum_probs=68.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHcC--CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLD--LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg--~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~ 239 (297)
.|..+.+...+-+.+.+|+.+..+ ++++ .-++|+|++++...++.+- +. +
T Consensus 180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~---------~I~it~G~~eal~~~~~~l----~~---------------~ 231 (517)
T PRK13355 180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVD---------DIYTGNGVSELINLSMSAL----LD---------------D 231 (517)
T ss_pred CCCCCcChHHHHHHHHHHHHhcCCCCCChh---------HEEEeCcHHHHHHHHHHHh----CC---------------C
Confidence 344444455666667777755432 3332 5889999999988777652 11 1
Q ss_pred ceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
.-.|+++.-.++....++.+.|.+++.+++++ ++.+|+++|++++..
T Consensus 232 Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~ 280 (517)
T PRK13355 232 GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS 280 (517)
T ss_pred CCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc
Confidence 11466778888899999999999999999975 578999999988754
No 161
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=95.86 E-value=0.12 Score=49.09 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=69.4
Q ss_pred HHHHHHHhccccc-cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678 148 VADILSDSIACIG-FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226 (297)
Q Consensus 148 l~d~l~~~lN~n~-~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~ 226 (297)
+.+.+...++... ..|...+...++.+.+.+|+.+ .|.+-+ ...-++|+||++++..++.+..+
T Consensus 53 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~-------~~~i~~t~G~~~al~~~~~~l~~------- 117 (401)
T TIGR01264 53 VMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE-------ADDVVLCSGCSHAIEMCIAALAN------- 117 (401)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC-------HHHEEECcChHHHHHHHHHHhCC-------
Confidence 3444444444321 2233334445566666666654 233211 12477899999998877765311
Q ss_pred hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
..+ .|+++.-+.......+...|+.++.++++. ++.+|++.|++.+.+
T Consensus 118 -----------~gd-~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~ 167 (401)
T TIGR01264 118 -----------AGQ-NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE 167 (401)
T ss_pred -----------CCC-EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence 012 355566666777888999999999998863 579999999987754
No 162
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=95.85 E-value=0.12 Score=50.19 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+...+-+.+.+++.+.+|..... ....-++|+|+|+++.+.+.+- . . ..+ .|+++.
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v-----~p~~Ivit~G~t~al~~l~~~l----~-~-------------pGD-~Vlv~~ 151 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARF-----DPDRIVLTAGATAANELLTFIL----A-D-------------PGD-ALLVPT 151 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCc-----CHHHeEEcCChHHHHHHHHHHh----C-C-------------CCC-EEEEcC
Confidence 34456666777887776631100 0125789999999886655542 1 0 112 345566
Q ss_pred CCcchHHHHHHh-cCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCc
Q psy1678 248 QAHSSVERAGLL-GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKI 293 (297)
Q Consensus 248 ~aH~Si~Kaa~~-lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~ 293 (297)
-....+.....+ .|++++.|+++. ++.+|+++|++++++..++|..
T Consensus 152 P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~ 200 (447)
T PLN02607 152 PYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIR 200 (447)
T ss_pred CCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence 666677776664 788999999874 4679999999999987777653
No 163
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=95.85 E-value=0.41 Score=50.89 Aligned_cols=142 Identities=6% Similarity=-0.017 Sum_probs=78.4
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhcc--cccccc--ccCchhhHHHH
Q psy1678 101 PETAPD--TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIA--CIGFTW--IASPACTELEV 174 (297)
Q Consensus 101 ~~~lP~--~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN--~n~~~~--~~~p~~~~iE~ 174 (297)
+..+|. .+.+..++++++++....+... ..|.|.=+-+.-.++++-+.+..... +.-..| +.|...-+.=.
T Consensus 75 ~l~lp~~~~~~sE~e~~~~~~~la~kN~~~---~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~ 151 (993)
T PLN02414 75 SMKLSKYDEGLTESQMLEHMKSLASKNKVF---KSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLL 151 (993)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCcc---ccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHH
Confidence 345662 5789999999999886554331 12222111111122333232222111 111112 33344333333
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+.-.++|+|+|.+.. .-.|+.++|.+--.+++ +.... + + ++-+|++|+..|++..
T Consensus 152 ~~Qt~ia~LtG~~~a---------naSL~d~aTAaaea~~~-a~~~~--~----g---------~~~~VlVs~~~hP~~~ 206 (993)
T PLN02414 152 NYQTMITDLTGLPMS---------NASLLDEGTAAAEAMAM-CNNIL--K----G---------KKKKFLIASNCHPQTI 206 (993)
T ss_pred HHHHHHHHHhCCChh---------hEeecCChHHHHHHHHH-HHhcc--c----C---------CCCEEEEcCccCHhHH
Confidence 466789999999864 57788888876554443 32210 0 1 2235888999999986
Q ss_pred HHH----HhcCCceEEeeCC
Q psy1678 255 RAG----LLGGVTIRGLPAD 270 (297)
Q Consensus 255 Kaa----~~lg~~v~~Vp~d 270 (297)
... +-.|+.|+.+|++
T Consensus 207 ~v~~t~a~~~GieV~~v~~~ 226 (993)
T PLN02414 207 DVCQTRADGLGLEVVVADEK 226 (993)
T ss_pred HHHHHhhhhcCCEEEEecch
Confidence 554 3468888888764
No 164
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=95.84 E-value=0.14 Score=48.08 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=74.2
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhcccc---ccccccCc---hhhHHHHHHHHHHHHHcCCCccccccCCCCCCe
Q psy1678 127 THWHSPKFHAYFPTANSYPAIVADILSDSIACI---GFTWIASP---ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGG 200 (297)
Q Consensus 127 ~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n---~~~~~~~p---~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G 200 (297)
+.|.+-.|+|+-..++...+ +.+.+.....+. +.....+. ..+.+=.+.-+.+++++|.+. .
T Consensus 7 ~~~~s~~YL~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~-----------~ 74 (370)
T PRK05937 7 IDFVTNDFLGFSRSDTLVHE-VEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE-----------A 74 (370)
T ss_pred EEeECCCccCCCCCHHHHHH-HHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-----------E
Confidence 45677779998776554444 344444443221 12222222 134444456778999999864 3
Q ss_pred EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHH
Q psy1678 201 VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDAL 280 (297)
Q Consensus 201 ~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L 280 (297)
++.+.|+.+|+ ++..+ +. .+.-.|+.....|.|+..++.++.-..+.. ...|+++|
T Consensus 75 l~~~sG~~a~~-~~~~~----~~--------------~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~~l 130 (370)
T PRK05937 75 FIVPSGYMANL-GLCAH----LS--------------SVTDYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLDHL 130 (370)
T ss_pred EEECChHHHHH-HHHHH----hC--------------CCCCEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHHHH
Confidence 44445567775 32221 11 012257778999999999998864322223 35789999
Q ss_pred HHHHHHHHH
Q psy1678 281 EAAIEEDLK 289 (297)
Q Consensus 281 ~~~i~~~~~ 289 (297)
++.|++...
T Consensus 131 ~~~l~~~~~ 139 (370)
T PRK05937 131 ESLLESCRQ 139 (370)
T ss_pred HHHHHhhhc
Confidence 999986543
No 165
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=95.73 E-value=0.21 Score=47.01 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
...+-+.+.+|+.+..|.+-+. .-.-++|+|++++...++.+. +. +.-.|++.+-
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~------~~~ii~t~G~~~~i~~~~~~~----~~---------------~gd~Vl~~~P 125 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDP------ETEVISLIGSKEGIAHIPLAF----VN---------------PGDVVLVPDP 125 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCC------CCcEEEccCcHHHHHHHHHHh----CC---------------CCCEEEEcCC
Confidence 4567777888888887864220 013667899999887766542 11 1124666777
Q ss_pred CcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678 249 AHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 285 (297)
Q Consensus 249 aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~ 285 (297)
+.+....++...|.+++.||++. .+.+|+++|++.+.
T Consensus 126 ~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 126 GYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred CCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 88888889999999999999974 36689999988775
No 166
>PRK13578 ornithine decarboxylase; Provisional
Probab=95.71 E-value=0.21 Score=51.16 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678 177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA 256 (297)
Q Consensus 177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka 256 (297)
-+..|+++|.+.+ -.+|.|.|-+|..++.++-. +.-.|++...+|-|+..+
T Consensus 180 q~~AA~~fgAd~t----------yFlvNGTS~gn~a~i~a~~~-------------------~Gd~VLvdRN~HKSv~hg 230 (720)
T PRK13578 180 QKHAAKVFNADKT----------YFVLNGTSASNKVVTNALLT-------------------PGDLVLFDRNNHKSNHHG 230 (720)
T ss_pred HHHHHHHhCCCce----------EEEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHH
Confidence 3578999999875 56789999999988877411 112577899999999996
Q ss_pred -HHhcCCceEEeeCC--CC---CCcCHHH-----HHHHHHHH
Q psy1678 257 -GLLGGVTIRGLPAD--DS---YKLRGDA-----LEAAIEED 287 (297)
Q Consensus 257 -a~~lg~~v~~Vp~d--~~---~~md~~~-----L~~~i~~~ 287 (297)
..+.|+..+.++.. +. |.++++. ++++|++.
T Consensus 231 aLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~ 272 (720)
T PRK13578 231 ALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREV 272 (720)
T ss_pred HHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhc
Confidence 78889988877654 22 3456544 88888765
No 167
>PRK06290 aspartate aminotransferase; Provisional
Probab=95.67 E-value=0.22 Score=47.66 Aligned_cols=95 Identities=11% Similarity=0.045 Sum_probs=66.7
Q ss_pred chhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 167 PACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
++...+-..+.+|+.+..|.+ -+. .-.-++|+|++++...++.+. .. ... .|++
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~------~~~I~it~Gs~~al~~~~~~~----~~--------------~gd-~Vlv 135 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDP------VTEVIHSIGSKPALAMLPSCF----IN--------------PGD-VTLM 135 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCC------cceEEEccCHHHHHHHHHHHh----CC--------------CCC-EEEE
Confidence 445667777888888877764 210 014889999999876666542 11 012 4555
Q ss_pred cCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
..-+.+.....++..|.+++.||+|+ ++.+|+++|++.+.+
T Consensus 136 ~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~ 178 (410)
T PRK06290 136 TVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE 178 (410)
T ss_pred eCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc
Confidence 66677777888999999999999985 467899999888753
No 168
>PRK09265 aminotransferase AlaT; Validated
Probab=95.59 E-value=0.14 Score=48.75 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=53.0
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLR 276 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md 276 (297)
.-++|+|+++++..++.+. +. +.-.|++++-+|..+..++...|.+++.+++|. ++.+|
T Consensus 97 ~i~~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d 157 (404)
T PRK09265 97 DIYIGNGVSELIVMAMQAL----LN---------------NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPD 157 (404)
T ss_pred cEEEeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCC
Confidence 5788999999887766543 11 112466788999999999999999999998874 46899
Q ss_pred HHHHHHHHHH
Q psy1678 277 GDALEAAIEE 286 (297)
Q Consensus 277 ~~~L~~~i~~ 286 (297)
+++|++.+..
T Consensus 158 ~~~l~~~~~~ 167 (404)
T PRK09265 158 LDDIRSKITP 167 (404)
T ss_pred HHHHHHhccc
Confidence 9999988753
No 169
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=95.59 E-value=0.12 Score=49.22 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=55.7
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .+++++|.+ ..++|+||++|+..++.+. +. ... .|+
T Consensus 59 ~~p~~~~le~----~la~l~g~~-----------~~v~~ssG~~Ai~~al~al----~~--------------~Gd-~Vi 104 (390)
T PRK08133 59 TNPTVTMFQE----RLAALEGAE-----------ACVATASGMAAILAVVMAL----LQ--------------AGD-HVV 104 (390)
T ss_pred CChHHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence 3555555665 577888864 3788999999999887653 11 011 466
Q ss_pred ecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+.. +.+..+|++++.|+++ |+++|+++|++
T Consensus 105 ~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~ 145 (390)
T PRK08133 105 SSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRP 145 (390)
T ss_pred EccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence 7777776543 4556678888888765 67777777753
No 170
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=95.47 E-value=0.076 Score=49.64 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++++|.+++ .-++|+|+++++...+.+. .. +.-.|++++..+....
T Consensus 71 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~l----~~---------------~gd~vl~~~p~y~~~~ 122 (367)
T PRK02731 71 ELKAALAEKFGVDPE---------RIILGNGSDEILELLARAY----LG---------------PGDEVIYSEHGFAVYP 122 (367)
T ss_pred HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEecCCHHHHH
Confidence 344566777787653 4788999888765443332 11 1124666777777777
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
.++...|.+++.||++ ++.+|++.|++.++
T Consensus 123 ~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~ 152 (367)
T PRK02731 123 IAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT 152 (367)
T ss_pred HHHHHcCCeEEEeccc-CCCCCHHHHHHHhC
Confidence 7788899999999994 58899999998885
No 171
>PRK03321 putative aminotransferase; Provisional
Probab=95.45 E-value=0.067 Score=49.76 Aligned_cols=84 Identities=14% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++++|.+++ .-++|+|+++++..++.+. .. ... .|++...+.....
T Consensus 61 ~lr~~ia~~~~~~~~---------~I~~~~G~~~~l~~~~~~~----~~--------------~gd-~Vli~~p~y~~~~ 112 (352)
T PRK03321 61 ELRAALAEHLGVPPE---------HVAVGCGSVALCQQLVQAT----AG--------------PGD-EVIFAWRSFEAYP 112 (352)
T ss_pred HHHHHHHHHhCcCHH---------HEEECCCHHHHHHHHHHHh----cC--------------CCC-EEEeCCCCHHHHH
Confidence 345566777776653 4788998888766554321 11 012 3444444434455
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.+++..|.+++.||.++++.+|+++|++.++.
T Consensus 113 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~ 144 (352)
T PRK03321 113 ILVQVAGATPVQVPLTPDHTHDLDAMAAAITD 144 (352)
T ss_pred HHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc
Confidence 57788899999999997799999999988853
No 172
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=95.44 E-value=0.076 Score=49.59 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+.+++.+|.+++ .-++|+|+++++...+.+. .. .+.-.|++..-.......
T Consensus 65 Lr~aia~~~~~~~~---------~I~it~Gs~~~i~~~~~~~----~~--------------~g~d~vlv~~P~y~~y~~ 117 (354)
T PRK04635 65 LINAYSAYAGVAPE---------QILTSRGADEAIELLIRAF----CE--------------PGQDSIACFGPTYGMYAI 117 (354)
T ss_pred HHHHHHHHhCcCHH---------HEEEeCCHHHHHHHHHHHh----cC--------------CCCCeEEEcCCChHHHHH
Confidence 44566677788765 5889999999888766542 11 011235556666666778
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALE 281 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~ 281 (297)
.++..|++++.||+++++.+|++.++
T Consensus 118 ~~~~~g~~v~~v~~~~~~~~~~~~l~ 143 (354)
T PRK04635 118 SAETFNVGVKALPLTADYQLPLDYIE 143 (354)
T ss_pred HHHHcCCEEEEEecCCCCCCCHHHHH
Confidence 88999999999999988999999886
No 173
>PRK09148 aminotransferase; Validated
Probab=95.42 E-value=0.22 Score=47.44 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=63.8
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|....+...+...+.+|+.+..|.+-+. ...-++|+|++++...++.+-.+ +.-.
T Consensus 64 Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~l~~-------------------~gd~ 118 (405)
T PRK09148 64 YSASKGIPGLRRAQAAYYARRFGVKLNP------DTQVVATLGSKEGFANMAQAITA-------------------PGDV 118 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEcCChHHHHHHHHHHhcC-------------------CCCE
Confidence 3333345677778888888877764210 01478999999998776654311 1114
Q ss_pred EEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
|+++.-+++....++...|..++.||+++++. +++.|++.++
T Consensus 119 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~ 160 (405)
T PRK09148 119 ILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVR 160 (405)
T ss_pred EEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHh
Confidence 56677788888888888999999999876532 3455655554
No 174
>PRK08637 hypothetical protein; Provisional
Probab=95.40 E-value=0.33 Score=45.96 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=49.8
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH-HhcCCceEEeeCC-CCCCcC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG-LLGGVTIRGLPAD-DSYKLR 276 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa-~~lg~~v~~Vp~d-~~~~md 276 (297)
..++|+|++++..+.+.+.-+ +.-.|++..-+++....++ ...|.+++.||++ +++.+|
T Consensus 71 ~I~it~G~~~al~~~~~~l~~-------------------~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d 131 (388)
T PRK08637 71 LPIVTNALTHGLSLVADLFVD-------------------QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFD 131 (388)
T ss_pred eeeEccchHHHHHHHHHHhcC-------------------CCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCC
Confidence 368999999988766654210 1124556666777777764 4689999999984 567899
Q ss_pred HHHHHHHHHH
Q psy1678 277 GDALEAAIEE 286 (297)
Q Consensus 277 ~~~L~~~i~~ 286 (297)
+++|++.++.
T Consensus 132 ~~~l~~~~~~ 141 (388)
T PRK08637 132 TDALKEALQA 141 (388)
T ss_pred HHHHHHHHHh
Confidence 9999998873
No 175
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=95.38 E-value=0.19 Score=47.79 Aligned_cols=79 Identities=11% Similarity=0.000 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++-+.+++++|.+ ..++++.|+++|..++.+++... +..+|++....|.|+.
T Consensus 94 ~Le~~la~~~g~~-----------~~l~~~sG~~an~~ai~~l~~~~-----------------~~~~v~~~~~~h~s~~ 145 (402)
T TIGR01821 94 ELEAELADLHGKE-----------SALVFTSGYVANDATLATLAKII-----------------PGCVIFSDELNHASMI 145 (402)
T ss_pred HHHHHHHHHhCCC-----------eEEEECchHHHHHHHHHHhhCCC-----------------CCCEEEEcchHhHHHH
Confidence 4556778888854 26777778999999998875320 1235666667899999
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.++...|..++.++. .|+++|++.++.
T Consensus 146 ~~~~~~g~~~~~~~~-----~d~~~l~~~l~~ 172 (402)
T TIGR01821 146 EGIRHSGAEKFIFRH-----NDVAHLEKLLQS 172 (402)
T ss_pred HHHHHcCCeEEEECC-----CCHHHHHHHHHh
Confidence 998888887766543 377888888864
No 176
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=95.37 E-value=0.39 Score=45.32 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=66.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
.|...+....+-+.+.+|+.+..|++-+ .. .-++|+|++++...++.+. +. ..+
T Consensus 63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~~I~it~Gs~~al~~~~~~l----~~--------------~gd 117 (388)
T PRK07366 63 GYLLFHGTLDFREAAAQWYEQRFGLAVD-------PETEVLPLIGSQEGTAHLPLAV----LN--------------PGD 117 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCcCC-------CcCeEEECCCcHHHHHHHHHHh----CC--------------CCC
Confidence 3444445566777788888888776422 01 3667899999887766542 11 012
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHH
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE 285 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~ 285 (297)
.|++.+-+.+.....+...|.+++.||++++ +.+|+++|++.+.
T Consensus 118 -~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (388)
T PRK07366 118 -FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL 163 (388)
T ss_pred -EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc
Confidence 3555666777778888999999999999853 5688888877664
No 177
>PTZ00376 aspartate aminotransferase; Provisional
Probab=95.34 E-value=0.29 Score=46.57 Aligned_cols=103 Identities=9% Similarity=-0.030 Sum_probs=68.1
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeE--EcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGV--IQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~--~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~ 239 (297)
.|....+..++=+.+.+|+.+.-+.+-+ ...-+ .|+||+.|...++.+.+.. +. +
T Consensus 67 ~Y~~~~G~~~lR~aia~~~~~~~~~~~~-------~~~v~~~~t~G~~~al~~~~~~l~~~-~~---------------~ 123 (404)
T PTZ00376 67 EYLPIEGLQSFIEAAQKLLFGEASYALA-------EKRIATVQALSGTGALRLGFEFLKRF-LP---------------A 123 (404)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCccccc-------cCeEEEeeccCcchHHHHHHHHHHHh-cC---------------C
Confidence 3444444555656677777544332111 01233 4899999988777654322 11 1
Q ss_pred ceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHH
Q psy1678 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEED 287 (297)
Q Consensus 240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~ 287 (297)
.-.|++.+-+.+....+++.+|.+++.||++ +++.+|++.|++++++.
T Consensus 124 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 124 GTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred CCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC
Confidence 1246667778888899999999999999993 35899999999998653
No 178
>PRK09064 5-aminolevulinate synthase; Validated
Probab=95.23 E-value=0.2 Score=47.68 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+-+.+++++|.+. .++.+.|++||..++.+++.. .++.+|++....|.|+..
T Consensus 96 l~~~la~~~g~~~-----------~~~~~sG~~an~~ai~~l~~~-----------------~~~~~i~~~~~~h~s~~~ 147 (407)
T PRK09064 96 LERELADLHGKEA-----------ALVFTSGYVSNDATLSTLAKL-----------------IPDCVIFSDELNHASMIE 147 (407)
T ss_pred HHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHHhCC-----------------CCCCEEEEeCcchHHHHH
Confidence 4456677777542 566677889999998876432 023356677788999988
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|..++.++. .|++.|++.++.
T Consensus 148 ~~~~~~~~~~~~~~-----~d~~~le~~l~~ 173 (407)
T PRK09064 148 GIRRSRCEKHIFRH-----NDVAHLEELLAA 173 (407)
T ss_pred HHHHcCCcEEEECC-----CCHHHHHHHHHh
Confidence 88888887766664 278889888864
No 179
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=95.21 E-value=0.22 Score=47.07 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.++.+.|+++.+.+ ..+||+|||+||..|+++||.+.
T Consensus 76 ~~la~~l~~~~~~~-----------~v~~~~sGseA~~~al~~ar~~~ 112 (389)
T PRK01278 76 ERLAERLVENSFAD-----------KVFFTNSGAEAVECAIKTARRYH 112 (389)
T ss_pred HHHHHHHHhhCCCC-----------EEEEcCCcHHHHHHHHHHHHHHH
Confidence 34455666666432 38899999999999999999863
No 180
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=95.12 E-value=1.7 Score=42.28 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc----
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH---- 250 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH---- 250 (297)
.+-+.+++++|.+. .+++++|+.|++.++.+ +. . ++ .|++|...|
T Consensus 126 ~le~~lA~l~gae~-----------alvv~sg~aAi~l~l~~-----l~----~----------Gd-eVIvs~~e~v~~g 174 (454)
T TIGR00474 126 HVEGLLCELTGAED-----------ALVVNNNAAAVLLALNT-----LA----K----------GK-EVIVSRGELVEIG 174 (454)
T ss_pred HHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHH-----hC----C----------cC-EEEECCChhhhhc
Confidence 46678899999864 56778888888777733 11 0 12 466676554
Q ss_pred --chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 251 --SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 251 --~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
+++...+...|+.++.|+++ +..|+++++++|.+.
T Consensus 175 gs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~ 211 (454)
T TIGR00474 175 GSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITEN 211 (454)
T ss_pred chhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcC
Confidence 35556667778888887664 356788888888653
No 181
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=95.11 E-value=0.21 Score=47.50 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCCCCCccccccCCCCCCHHHHHHHHHHHh-ccccc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE
Q psy1678 126 VTHWHSPKFHAYFPTANSYPAIVADILSDS-IACIG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI 202 (297)
Q Consensus 126 ~~~~~~p~~~g~~~s~~~~~svl~d~l~~~-lN~n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ 202 (297)
.+.|.+-.|+|.-..+. ....+.+.+... ....+ .....++...++|+ .||+.+|.+. .++
T Consensus 41 ~~nf~SNdYLGLa~~~~-~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~-----------al~ 104 (388)
T COG0156 41 VLNFCSNDYLGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEA-----------ALL 104 (388)
T ss_pred eEeeeccCcccccCCHH-HHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCc-----------EEE
Confidence 34677777888765543 222222222221 11111 22344566677887 6778889874 445
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678 203 QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA 282 (297)
Q Consensus 203 tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~ 282 (297)
-+.|-.||+-.+-+- . .++-+|+.=+..|.|+..++++.+.+++.-+- -|+++|++
T Consensus 105 f~SGy~AN~~~i~~l-----~--------------~~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~ 160 (388)
T COG0156 105 FSSGFVANLGLLSAL-----L--------------KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEA 160 (388)
T ss_pred EcccchhHHHHHHHh-----c--------------CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHH
Confidence 555778887665542 1 12447788899999999999999998887654 68899999
Q ss_pred HHHHHHHCC
Q psy1678 283 AIEEDLKKG 291 (297)
Q Consensus 283 ~i~~~~~~G 291 (297)
.|++...+|
T Consensus 161 ~l~~~~~~~ 169 (388)
T COG0156 161 LLEEARENG 169 (388)
T ss_pred HHHhhhccC
Confidence 999977554
No 182
>PRK07505 hypothetical protein; Provisional
Probab=95.10 E-value=0.23 Score=47.23 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
+....++.+.|++++|. + -+++++|+++|..++..++..... + .++.+|+.....
T Consensus 90 ~~~~~~l~~~la~~~~~-~-----------~~~~~sG~~a~~~ai~~~~~~~~~-----~--------~~~~vi~~~~~~ 144 (402)
T PRK07505 90 SQILKDLEEALSELFGA-S-----------VLTFTSCSAAHLGILPLLASGHLT-----G--------GVPPHMVFDKNA 144 (402)
T ss_pred hHHHHHHHHHHHHHhCC-C-----------EEEECChHHHHHHHHHHHHhcccC-----C--------CCCCEEEEchhh
Confidence 44555677888898886 3 455556788999999887542211 0 122356677799
Q ss_pred cchHHHHHHh--cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 250 HSSVERAGLL--GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 250 H~Si~Kaa~~--lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|.|+.....+ .+.+++.+|.+ |+++|++++++
T Consensus 145 H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~ 178 (402)
T PRK07505 145 HASLNILKGICADETEVETIDHN-----DLDALEDICKT 178 (402)
T ss_pred hHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhc
Confidence 9998543222 24577777763 78888887753
No 183
>PRK06855 aminotransferase; Validated
Probab=95.10 E-value=0.31 Score=46.96 Aligned_cols=96 Identities=11% Similarity=-0.016 Sum_probs=60.5
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|....+..++-+.+.+|+.+..|++-+. ..-++|+|++++...++. . +. ... .
T Consensus 69 Y~~~~G~~~LReaia~~~~~~~g~~~~~-------~~I~it~G~~~al~~~~~-l----~~--------------~Gd-~ 121 (433)
T PRK06855 69 YCPTKGVLETREFLAELNNKRGGAQITP-------DDIIFFNGLGDAIAKIYG-L----LR--------------REA-R 121 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHhccCCCCCH-------hHEEEcCcHHHHHHHHHH-h----cC--------------CCC-e
Confidence 4333445566667888888877764221 258899999998766642 1 11 012 3
Q ss_pred EEecCCCcchHHHHH-HhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAG-LLGGVTIRGLPADD--SYKLRGDALEAAIE 285 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa-~~lg~~v~~Vp~d~--~~~md~~~L~~~i~ 285 (297)
|++.+-+.+....++ ...|+.++.||+++ .+.+|+++|++.++
T Consensus 122 Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~ 167 (433)
T PRK06855 122 VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVK 167 (433)
T ss_pred EEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHh
Confidence 444555555444332 34588889999874 46899999999886
No 184
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=95.02 E-value=0.5 Score=45.55 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=73.9
Q ss_pred ChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHH-HHH--Hhcccc-ccccccCc
Q psy1678 92 EPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVAD-ILS--DSIACI-GFTWIASP 167 (297)
Q Consensus 92 ~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d-~l~--~~lN~n-~~~~~~~p 167 (297)
-|++++..-+..+|+. .+..++++++.+...++.. ...|.|-=...--.++++.. ++. .++... ..-.+.|.
T Consensus 31 IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQ 106 (429)
T PF02347_consen 31 IPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQ 106 (429)
T ss_dssp S-GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBH
T ss_pred CCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHH
Confidence 3555533323455543 7889999999998766543 12243322222234455554 221 122221 11224455
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+.-++=-+--.|+|+|.|++-. .--+..|+|- --.|++.|.....+ ++-++++|+
T Consensus 107 G~Lq~lfe~Qs~i~eLTGmdva---------NaSlyd~atA-~aEa~~ma~r~~~~---------------~~~~vlv~~ 161 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTGMDVA---------NASLYDGATA-AAEAMLMAVRATKR---------------KRNKVLVPE 161 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEE----------SEBSSCCHH-HHHHHHHHHHHHTT------------------EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCcc---------CCCCCChhHH-HHHHHHHHHHhccc---------------CCcEEEEcC
Confidence 5444444556799999999853 2234445543 23344443322111 123578899
Q ss_pred CCcchHHHHHH----hcCCceEEeeCCCCCCcC
Q psy1678 248 QAHSSVERAGL----LGGVTIRGLPADDSYKLR 276 (297)
Q Consensus 248 ~aH~Si~Kaa~----~lg~~v~~Vp~d~~~~md 276 (297)
..|+......+ ..|++++.+|+++.+..|
T Consensus 162 ~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d 194 (429)
T PF02347_consen 162 SLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD 194 (429)
T ss_dssp TS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-
T ss_pred CcChhhHHHHHHhhhhCCeEEEEecccccCCcc
Confidence 99999887544 468899999999888886
No 185
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=94.94 E-value=0.3 Score=46.93 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|...++|+.+.+.+++++|... .-+++++||.||+.++.+- .. +.-.|++
T Consensus 69 ~~~~~~lE~~~~~~la~l~g~~~----------alv~~~SG~~A~~~~l~al----~~---------------~GD~Vl~ 119 (416)
T PRK13034 69 CEFVDEVEALAIERAKQLFGCDY----------ANVQPHSGSQANGAVYLAL----LK---------------PGDTILG 119 (416)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCc----------eEEecCCcHHHHHHHHHHh----cC---------------CCCEEEE
Confidence 47788999888889999999863 2356789999999887763 11 1225778
Q ss_pred cCCCcch-HHHHHHh--cCCce--EEeeCCC-CCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSS-VERAGLL--GGVTI--RGLPADD-SYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~S-i~Kaa~~--lg~~v--~~Vp~d~-~~~md~~~L~~~i~~ 286 (297)
+...|.+ +.-++.. ++..+ +..++|. .+.+|+++|++.++.
T Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 166 (416)
T PRK13034 120 MSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE 166 (416)
T ss_pred cCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh
Confidence 8899987 3333332 22222 3444543 577999999998864
No 186
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=94.91 E-value=0.32 Score=45.73 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
...++.++.+++++..+.+ .-+|+++|++||..|++.||..
T Consensus 69 ~~~~~~~la~~l~~~~~~~-----------~~~~~~sG~~a~~~A~~~a~~~ 109 (377)
T PRK02936 69 TNSLQEEVASLLAENSAGD-----------LVFFCNSGAEANEAALKLARKH 109 (377)
T ss_pred CCHHHHHHHHHHHhcCCCC-----------EEEEeCCcHHHHHHHHHHHHHh
Confidence 3567777778888876543 3789999999999999999764
No 187
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=94.90 E-value=0.083 Score=49.53 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=59.8
Q ss_pred cccccccccC---chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1678 157 ACIGFTWIAS---PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT-ASEATLVALLGAKAKTMQRVKEAHPDW 232 (297)
Q Consensus 157 N~n~~~~~~~---p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG-GT~anl~Al~~AR~~~~~~~~~~~~~~ 232 (297)
|..-..+..+ +-+..+-.++.+.+++++|.++. ..-+||+| ||+++-+++..- ..+ +
T Consensus 27 ~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~--------~~vvf~~gs~T~a~~~~~~~l----~~~----~--- 87 (355)
T cd00611 27 GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN--------YKVLFLQGGATGQFAAVPLNL----LGD----K--- 87 (355)
T ss_pred cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchHHHHHHHHhc----CCC----C---
Confidence 4433444455 44456666799999999998643 25899988 999887766553 110 0
Q ss_pred CCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCc
Q psy1678 233 KDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKL 275 (297)
Q Consensus 233 ~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~m 275 (297)
.+..+|+.+.-.|-+.+ .+.-.|+.++.++++++|..
T Consensus 88 -----~~~~~i~~g~~~~~~~~-~a~~~g~~~~~~~~~~~g~~ 124 (355)
T cd00611 88 -----GTADYVVTGAWSAKAAK-EAKRYGGVVVIVAAKEEGKY 124 (355)
T ss_pred -----CeEEEEECCHHHHHHHH-HHHhcCCCcEEEecccccCC
Confidence 12346666655665533 34455899999998866543
No 188
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=94.90 E-value=0.11 Score=48.84 Aligned_cols=81 Identities=14% Similarity=-0.062 Sum_probs=57.4
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+.+++.+|.+++ .-++|+|+++++..++.+. .. +.-.|++.+-+++++..
T Consensus 72 Lr~~ia~~~~~~~~---------~I~it~G~~~~l~~~~~~~----~~---------------~gd~vlv~~p~y~~~~~ 123 (369)
T PRK08153 72 LRHALAAHHGVAPE---------NIMVGEGIDGLLGLIVRLY----VE---------------PGDPVVTSLGAYPTFNY 123 (369)
T ss_pred HHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEECCCcchHHHH
Confidence 33455555677654 5888999988776555442 10 11246677788888888
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
.+..+|.+++.||.+.+ .+|+++|.+.+.
T Consensus 124 ~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~ 152 (369)
T PRK08153 124 HVAGFGGRLVTVPYRDD-REDLDALLDAAR 152 (369)
T ss_pred HHHHcCCeEEEeeCCCC-CCCHHHHHHHhc
Confidence 89999999999999776 489988877664
No 189
>PRK04311 selenocysteine synthase; Provisional
Probab=94.88 E-value=1.6 Score=42.72 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
....+ .+-+.+++++|.+. .+++++|+.|++.++.+ +. . .+ .|++|..
T Consensus 126 g~r~~-~~e~~lA~l~Gae~-----------a~vv~sgtaAl~l~l~~-----l~----~----------Gd-eVIvs~~ 173 (464)
T PRK04311 126 GSRDR-ALAALLCALTGAED-----------ALVVNNNAAAVLLALNA-----LA----A----------GK-EVIVSRG 173 (464)
T ss_pred chHHH-HHHHHHHHHhCCCe-----------EEEECCHHHHHHHHHHH-----hC----C----------CC-EEEEcch
Confidence 33344 45678899999753 67888899999877743 11 0 11 4667776
Q ss_pred Ccch------HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 249 AHSS------VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 249 aH~S------i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
.|++ +...+...|+.++.|+++ +..++++++++|.+.
T Consensus 174 e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~ 216 (464)
T PRK04311 174 ELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINEN 216 (464)
T ss_pred hhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCcc
Confidence 6653 445566678888877664 356788999888754
No 190
>PLN02822 serine palmitoyltransferase
Probab=94.69 E-value=0.7 Score=45.31 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
.....++-+.+++++|.++ .-+||+|++ +|..++.+. .. +.-+|++....
T Consensus 153 ~~~~~~Lee~La~~~~~~~----------~i~~s~G~~-a~~sai~a~----~~---------------~gd~Ii~d~~~ 202 (481)
T PLN02822 153 IDVHLDCETKIAKFLGTPD----------SILYSYGLS-TIFSVIPAF----CK---------------KGDIIVADEGV 202 (481)
T ss_pred HHHHHHHHHHHHHHhCCCC----------EEEECCHHH-HHHHHHHHh----CC---------------CCCEEEEeCCc
Confidence 3445556667788888664 366677666 565544432 11 12246678899
Q ss_pred cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
|+|+..++.+.|.+++.++.+ |.+.|+..+++..
T Consensus 203 H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~ 236 (481)
T PLN02822 203 HWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLT 236 (481)
T ss_pred cHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHh
Confidence 999999999999988888876 4567777776543
No 191
>PRK07908 hypothetical protein; Provisional
Probab=94.60 E-value=0.16 Score=47.15 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
...+++++.+|.+++ .-++|+|+++++..++. +. ..+ +++ ..-+-....
T Consensus 62 ~lr~aia~~~~~~~~---------~I~it~Ga~~al~~~~~------l~--------------~~~-viv-~~P~y~~~~ 110 (349)
T PRK07908 62 RARAAVAARHGRTPD---------EVLLLAGAAEGFALLAR------LR--------------PRR-AAV-VHPSFTEPE 110 (349)
T ss_pred HHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHh------cC--------------CCe-EEE-eCCCChHHH
Confidence 355677777787654 58999999999875543 11 012 222 233444456
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALE 281 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~ 281 (297)
.++...|++++.||+|+++.+|+++|+
T Consensus 111 ~~~~~~G~~i~~v~~~~~~~~d~~~l~ 137 (349)
T PRK07908 111 AALRAAGIPVHRVVLDPPFRLDPAAVP 137 (349)
T ss_pred HHHHHcCCEEEeeccCcccCcChhHhc
Confidence 677889999999999988999998663
No 192
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=94.54 E-value=0.53 Score=44.71 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
...++-+.|++++|++. -.|+++||+||..|++.||.+.
T Consensus 80 ~~~~l~~~l~~~~~~~~-----------~~~~~SGs~A~e~ai~~a~~~~ 118 (401)
T TIGR01885 80 VFGEFAEYVTKLFGYDK-----------VLPMNTGAEAVETAIKLARKWG 118 (401)
T ss_pred HHHHHHHHHHhhcCCCE-----------EEEeCccHHHHHHHHHHHHHHh
Confidence 33445557777778653 6789999999999999999864
No 193
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=94.50 E-value=0.24 Score=46.46 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
...+.+++.+|.+++ .-++|+|++++..+++.+. .. .+.-.|+++.-......
T Consensus 63 ~lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~~----~~--------------~g~~~vlv~~p~y~~~~ 115 (364)
T PRK04781 63 GLRSALAALYGCAPE---------QLLIGRGSDEAIDLLVRAL----CV--------------PGRDAVLVTPPVFGMYA 115 (364)
T ss_pred HHHHHHHHHhCcChH---------HEEEeCCHHHHHHHHHHHh----cC--------------CCCCeEEEcCCChHHHH
Confidence 455667777788654 5889999999887766542 10 01123556655655566
Q ss_pred HHHHhcCCceEEeeCCC---CCCcCHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADD---SYKLRGDALEAAI 284 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i 284 (297)
..++..|.+++.||.++ .+++|+++|.+.+
T Consensus 116 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 148 (364)
T PRK04781 116 VCARLQNAPLVEVPLVDGADGFHADVPAIVAAA 148 (364)
T ss_pred HHHHHcCCEEEEEecCCCccCCCcCHHHHHHHH
Confidence 67788999999999842 3478998876554
No 194
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=94.50 E-value=0.8 Score=43.58 Aligned_cols=37 Identities=16% Similarity=-0.036 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.++-+.|+++++.+ .-.|+++||+||..|+++||.+.
T Consensus 80 ~~la~~L~~~~~~~-----------~~~f~~SGseA~e~Alk~ar~~~ 116 (397)
T TIGR03246 80 LRLAKKLVDATFAD-----------KVFFCNSGAEANEAALKLARRYA 116 (397)
T ss_pred HHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 34445666666543 37899999999999999999864
No 195
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=94.49 E-value=0.26 Score=47.70 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=59.2
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|...++|+ -++++.|.. ..++|++||.|+.+++.+. +. +.-.|
T Consensus 61 ~~~p~~~~le~----~lA~l~g~~-----------~av~~sSGt~Al~~al~~l----l~---------------~Gd~V 106 (433)
T PRK08134 61 ISNPTVAVLEE----RVAALEGGV-----------GAIATASGQAALHLAIATL----MG---------------AGSHI 106 (433)
T ss_pred CcChHHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence 34577777776 567778764 2699999999999888753 11 11157
Q ss_pred EecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...|.+..... .-+|+.++.|+++ |+++|+++|++
T Consensus 107 i~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~ 148 (433)
T PRK08134 107 VASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRP 148 (433)
T ss_pred EEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCC
Confidence 78888887665544 3368888888875 78888888864
No 196
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=94.44 E-value=0.7 Score=43.28 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccc
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEF 190 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~ 190 (297)
.+..++.+++.+..+....-+ .|+|.-..+. ......+.+... + +...+..++.+.+++.+|.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~ylgl~~~~~-~~~~~~~~~~~~----~-------g~~~~~~~Le~~lA~~~g~~~e- 72 (346)
T TIGR03576 7 REKALEIIREKISRGGRDSLY-DLTGLAGGFK-IDEEDLELLETY----V-------GPAIFEEKVQELGREHLGGPEE- 72 (346)
T ss_pred HHHHHHHHHHHHhccCCcccc-ccccCCCChh-HHHHHHHHHHHh----c-------CCHHHHHHHHHHHHHHcCCCcc-
Confidence 456677777776665433221 3777654432 222233333332 1 2346777888899999999754
Q ss_pred cccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe-c-CCCcchHHHHHHhcCCce
Q psy1678 191 LACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC-S-DQAHSSVERAGLLGGVTI 264 (297)
Q Consensus 191 ~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~-s-~~aH~Si~Kaa~~lg~~v 264 (297)
..++++||+++|..++.+--+ ....+++. + ...|.|+..++++.|.++
T Consensus 73 --------~ilv~~gg~~a~~~~~~al~~------------------~gd~Vli~~~d~p~~~s~~~~~~l~ga~~ 122 (346)
T TIGR03576 73 --------KILVFNRTSSAILATILALEP------------------PGRKVVHYLPEKPAHPSIPRSCKLAGAEY 122 (346)
T ss_pred --------eEEEECCHHHHHHHHHHHhCC------------------CCCEEEECCCCCCCchhHHHHHHHcCCEE
Confidence 588999999999888876311 12223332 3 569999999999888754
No 197
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=94.40 E-value=0.76 Score=48.51 Aligned_cols=138 Identities=7% Similarity=0.036 Sum_probs=73.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCC--CCCCccccccCCCCCCHHHHH--HHHHHHhccccccccccCchhhHHHHHHH
Q psy1678 102 ETAPDTPDTWQEVMSDIERVIMPGVT--HWHSPKFHAYFPTANSYPAIV--ADILSDSIACIGFTWIASPACTELEVVML 177 (297)
Q Consensus 102 ~~lP~~g~~~~~il~~l~~~~~~~~~--~~~~p~~~g~~~s~~~~~svl--~d~l~~~lN~n~~~~~~~p~~~~iE~~v~ 177 (297)
..||+ +.+..++++++.+....+-. .+-.-.|+++.+++.-...++ .+|+++. . ..-.+.|.+.-++=-+.-
T Consensus 40 l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~Tay-t--PyQ~EisQG~Le~l~e~Q 115 (939)
T TIGR00461 40 LQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAY-T--PYQPEISQGRLEALLNFQ 115 (939)
T ss_pred CCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcC-C--CCChhhhhHHHHHHHHHH
Confidence 35664 56889999999887655432 111222333332221111121 2344433 1 122334555433334455
Q ss_pred HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH--
Q psy1678 178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER-- 255 (297)
Q Consensus 178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K-- 255 (297)
.|+++|.|++.. ...+..++|.+-= |+..|+... + .++-.|++++..|++...
T Consensus 116 t~i~eLtGm~~a---------NaSl~d~atA~aE-a~~~a~~~~--~-------------~~~~~vlv~~~~hP~~~~v~ 170 (939)
T TIGR00461 116 TVVSDLTGLPVA---------NASLLDEGTAAAE-AMALSFNVS--K-------------KKANKFFVAKDLHPQTKSVL 170 (939)
T ss_pred HHHHHHHCCChh---------hhhccchhhHHHH-HHHHHHHhh--c-------------CCCCEEEECCCCCcchHHHH
Confidence 789999999863 3456666664332 444443211 1 012357889999988663
Q ss_pred --HHHhcCCceEEee
Q psy1678 256 --AGLLGGVTIRGLP 268 (297)
Q Consensus 256 --aa~~lg~~v~~Vp 268 (297)
-+..+|++|+.++
T Consensus 171 ~t~a~~~g~~v~~~~ 185 (939)
T TIGR00461 171 HTRAKPFGIEVIVVD 185 (939)
T ss_pred HHHHHhcCcEEEEEc
Confidence 3357788887774
No 198
>PRK07568 aspartate aminotransferase; Provisional
Probab=94.34 E-value=0.54 Score=44.37 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+...+...+.+|+. ..|.+-+ ...-++|+|||+++..++.+. +. ..+ .|+++.
T Consensus 67 g~~~lr~~ia~~~~-~~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~--------------~gd-~Vl~~~ 119 (397)
T PRK07568 67 GIPELREAFAKYYK-KWGIDVE-------PDEILITNGGSEAILFAMMAI----CD--------------PGD-EILVPE 119 (397)
T ss_pred CCHHHHHHHHHHHH-HhCCCCC-------cceEEEcCChHHHHHHHHHHh----cC--------------CCC-EEEEec
Confidence 44455555555554 2343211 125789999999988776543 11 012 355565
Q ss_pred CCcchHHHHHHhcCCceEEeeCCC-CC-C-cCHHHHHHHHHH
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADD-SY-K-LRGDALEAAIEE 286 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~-~~-~-md~~~L~~~i~~ 286 (297)
-.+......+...|++++.||+|. +| . .+++.|++++++
T Consensus 120 p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~ 161 (397)
T PRK07568 120 PFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP 161 (397)
T ss_pred CCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc
Confidence 555566667788899999999973 33 3 357888888754
No 199
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=94.26 E-value=0.43 Score=43.03 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=69.0
Q ss_pred HHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH
Q psy1678 179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL 258 (297)
Q Consensus 179 ~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~ 258 (297)
.|++.+|.+. .-+|.|+-++-+..|.+--. . .. .+++-..+||+-.=||.
T Consensus 69 dlaeFlg~D~-----------~R~t~GARe~KfavMhal~~--------~----------gd-~vV~D~~aHYttyvAAE 118 (382)
T COG1103 69 DLAEFLGMDE-----------VRVTAGAREAKFAVMHALCK--------E----------GD-WVVVDSLAHYTTYVAAE 118 (382)
T ss_pred HHHHHhCCce-----------eeecccchhhHHHHHHHhcc--------C----------CC-EEEEcCcchHHHHHHHH
Confidence 4889999985 56799999888877665311 1 12 45667899999999999
Q ss_pred hcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCCCcc
Q psy1678 259 LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIP 294 (297)
Q Consensus 259 ~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G~~P 294 (297)
-.|++|..||-. ++++++++...+.|++-..+|-.|
T Consensus 119 ragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~ 156 (382)
T COG1103 119 RAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDP 156 (382)
T ss_pred hcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCC
Confidence 999999999965 589999999999999998887443
No 200
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=94.14 E-value=0.39 Score=45.25 Aligned_cols=83 Identities=23% Similarity=0.145 Sum_probs=57.7
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+ ..+++++|+.||..++.+... +.-.|+
T Consensus 38 ~~p~~~~le~----~la~l~g~~-----------~a~~~~sG~~Ai~~~l~~l~~-------------------~gd~Vl 83 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGE-----------AALAFSSGMAAISTVLLALLK-------------------AGDHVV 83 (369)
T ss_pred CChhHHHHHH----HHHHHHCCC-----------CEEEEcCHHHHHHHHHHHHcC-------------------CCCEEE
Confidence 4677777886 566677764 378899999999998887511 111466
Q ss_pred ecCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+... .+...|++++.++.+ |+++|+++|++
T Consensus 84 ~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~ 124 (369)
T cd00614 84 ASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKP 124 (369)
T ss_pred ECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCC
Confidence 77788877654 455678888888765 47778777753
No 201
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=94.13 E-value=0.25 Score=45.72 Aligned_cols=74 Identities=20% Similarity=0.103 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
.++.+++++++|.+++ .-++|+|+++++... ..+ +. +. .|++.+-++.++
T Consensus 50 ~~lr~~la~~~~~~~~---------~i~~t~G~~~~i~~~-~~~----l~---------------~g-~vl~~~p~y~~~ 99 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA---------SVLPVNGAQEAIYLL-PRL----LA---------------PG-RVLVLAPTYSEY 99 (330)
T ss_pred HHHHHHHHHHhCCChh---------hEEECCCHHHHHHHH-HHH----hC---------------CC-eEEEeCCCcHHH
Confidence 3456788888887643 578899988876653 221 11 12 355567788888
Q ss_pred HHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678 254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAI 284 (297)
Q Consensus 254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i 284 (297)
...+...|++++.+| |++.|++.+
T Consensus 100 ~~~~~~~g~~~~~~~-------d~~~l~~~~ 123 (330)
T TIGR01140 100 ARAWRAAGHEVVELP-------DLDRLPAAL 123 (330)
T ss_pred HHHHHHcCCEEEEeC-------CHHHHHhhc
Confidence 888888898888776 566666655
No 202
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=94.10 E-value=0.38 Score=44.63 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
....+.+.+.+|+.+. +.+++ .-++|+|+++++..++.+. . .|++.+
T Consensus 57 ~~~~Lr~aia~~~~~~-~~~~~---------~i~it~Ga~~~i~~~~~~~------d-----------------~v~v~~ 103 (335)
T PRK14808 57 PDEELIEKILSYLDTD-FLSKN---------NVSVGNGADEIIYVMMLMF------D-----------------RSVFFP 103 (335)
T ss_pred ChHHHHHHHHHHhCCC-CCCcc---------eEEEcCCHHHHHHHHHHHh------C-----------------cEEECC
Confidence 3444555555555443 25543 5889999999998777542 0 144566
Q ss_pred CCcchHHHHHHhcCCceEEeeCCCCCCcCHH
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGD 278 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~ 278 (297)
-+++....+++..|.+++.||.|+++.++..
T Consensus 104 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 134 (335)
T PRK14808 104 PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV 134 (335)
T ss_pred CCHHHHHHHHHHcCCeEEEecCCCcCCCChh
Confidence 7888899999999999999999988776643
No 203
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=94.03 E-value=0.27 Score=47.24 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=56.1
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|....+|+ .++++.|.+ ..++|++|+.++..++.+... . .. .|
T Consensus 54 ~~~p~~~~le~----~lA~l~g~~-----------~~v~~~sG~~Ai~~al~~l~~----~--------------Gd-~V 99 (418)
T TIGR01326 54 LMNPTTDVLEQ----RIAALEGGV-----------AALAVASGQAAITYAILNLAQ----A--------------GD-NI 99 (418)
T ss_pred CCChhHHHHHH----HHHHHhCCC-----------eEEEEccHHHHHHHHHHHHhC----C--------------CC-EE
Confidence 34455555554 678888864 379999999999888876521 0 11 35
Q ss_pred EecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...|. .+.+.+..+|+.++.|+.+ |+++|+++|.+
T Consensus 100 l~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~ 141 (418)
T TIGR01326 100 VSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDE 141 (418)
T ss_pred EEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence 55666553 3355667789888888754 78888877753
No 204
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=93.93 E-value=0.53 Score=44.60 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=53.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ -+++++|.+ ..+++++|+.++..++.+. +. ... .|++
T Consensus 53 ~p~~~~le~----~la~l~g~~-----------~~~~~~sG~~Ai~~al~al----~~--------------~Gd-~Vl~ 98 (380)
T TIGR01325 53 NPTVAAFEE----RIAALEGAE-----------RAVATATGMSAIQAALMTL----LQ--------------AGD-HVVA 98 (380)
T ss_pred CchHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence 455556664 567788874 3688999999999888653 11 011 3455
Q ss_pred cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+...|.+ +.+.+..+|++++.|+.+ |+++|+++|+
T Consensus 99 ~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~ 137 (380)
T TIGR01325 99 SRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVK 137 (380)
T ss_pred ecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcC
Confidence 6666644 344566678888888765 6777777664
No 205
>PLN02672 methionine S-methyltransferase
Probab=93.81 E-value=0.76 Score=49.22 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS 251 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~ 251 (297)
+-..+.+|+++..|++.+. ...-++|+|+++++..++.+- .. +.-.|++..-+.+
T Consensus 735 lr~aLa~~la~~~Gv~~d~------~e~IIvt~Gs~elL~lll~aL----l~---------------pGD~VLVp~PtY~ 789 (1082)
T PLN02672 735 PRPSILQFIKSNYGFPTDS------CTEFVYGDTSLALFNKLVLCC----VQ---------------EGGTLCFPAGSNG 789 (1082)
T ss_pred HHHHHHHHHHHHhCcCCCC------CCEEEEeCCHHHHHHHHHHHH----cC---------------CCCEEEEeCCChH
Confidence 4467889999999997531 013555666555554444332 11 1124556777888
Q ss_pred hHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678 252 SVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 286 (297)
Q Consensus 252 Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~ 286 (297)
....++...|.+++.||+++ .+++|++.|++++++
T Consensus 790 ~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~ 826 (1082)
T PLN02672 790 TYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET 826 (1082)
T ss_pred HHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence 88999999999999999973 579999999998853
No 206
>PRK05367 glycine dehydrogenase; Provisional
Probab=93.78 E-value=0.93 Score=48.21 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=81.3
Q ss_pred hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccc--ccCCCCCCHHHHHH-------HHHHHhcccccccc
Q psy1678 93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFH--AYFPTANSYPAIVA-------DILSDSIACIGFTW 163 (297)
Q Consensus 93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~--g~~~s~~~~~svl~-------d~l~~~lN~n~~~~ 163 (297)
|..++..-+..+| .+.+..++++++++...++.. +. .|. |+.. .-.++++. .|+++. .+ .-.
T Consensus 43 P~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~-~~--~~ig~G~y~--~~~P~vi~~~i~~~~~~~t~y-tP--yQ~ 113 (954)
T PRK05367 43 PASIRLAEPLDLP-AALSEAEALAELRAIASKNKV-FR--SYIGQGYYG--THTPPVILRNILENPAWYTAY-TP--YQP 113 (954)
T ss_pred CHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC-CC--cccCCCCCC--CcCcHHHHHHHHhCcchhhcc-CC--CCh
Confidence 4444322234555 357899999999988665533 11 122 2222 12233332 333322 11 112
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
+.|.+.-++=-+.-.++|+|.|.+.. .-.++.++|.+-- |+..++.... + ++-.|
T Consensus 114 EisQG~Leal~~~Qt~la~LtG~~~a---------naSl~d~aTAa~e-a~~~a~~~~~------~---------~~~~v 168 (954)
T PRK05367 114 EISQGRLEALLNFQTMVADLTGLEIA---------NASLLDEATAAAE-AMALAKRVSK------S---------KSNRF 168 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChh---------hccccccHHHHHH-HHHHhhhhcc------C---------CCCEE
Confidence 33444333333456789999999863 4667777776554 4444443210 0 01268
Q ss_pred EecCCCcchHHHH----HHhcCCceEEeeCCC
Q psy1678 244 YCSDQAHSSVERA----GLLGGVTIRGLPADD 271 (297)
Q Consensus 244 ~~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~ 271 (297)
++++..|++.... ++-.|++|+.+|.++
T Consensus 169 lv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~ 200 (954)
T PRK05367 169 FVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK 200 (954)
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEEEEecCcc
Confidence 8999999997743 466899988888754
No 207
>PRK05839 hypothetical protein; Provisional
Probab=93.74 E-value=1.5 Score=41.29 Aligned_cols=80 Identities=8% Similarity=-0.061 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
...+-+.+.+|+.+..|.+-. ...-++|+|++++....+.+... . .+.-.|++..-
T Consensus 62 ~~~lr~aia~~l~~~~g~~~~-------~~~I~it~G~~~al~~~~~~~~~---~--------------~~gd~vlv~~P 117 (374)
T PRK05839 62 EESLREAQRGFFKRRFKIELK-------ENELIPTFGTREVLFNFPQFVLF---D--------------KQNPTIAYPNP 117 (374)
T ss_pred CHHHHHHHHHHHHHHhCCCCC-------cceEEEecCcHHHHHHHHHHHhc---C--------------CCCCEEEECCC
Confidence 346666788899988885311 02588999999887665543210 0 01124556666
Q ss_pred CcchHHHHHHhcCCceEEeeCCCC
Q psy1678 249 AHSSVERAGLLGGVTIRGLPADDS 272 (297)
Q Consensus 249 aH~Si~Kaa~~lg~~v~~Vp~d~~ 272 (297)
+......++...|++++.||++++
T Consensus 118 ~y~~~~~~~~~~g~~v~~v~~~~~ 141 (374)
T PRK05839 118 FYQIYEGAAIASRAKVLLMPLTKE 141 (374)
T ss_pred CchhhHHHHHhcCCEEEEeecccc
Confidence 777778888888888888888743
No 208
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=93.73 E-value=0.37 Score=46.64 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=62.2
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|..+|....+|+ .+++++|++. .++|++||.|...+. .+ .++ ...
T Consensus 66 ~yag~~s~~~lE~----~va~~~G~~~-----------av~v~sGT~Al~ll~-~l---~l~--------------pGD- 111 (450)
T TIGR02618 66 AYAGSRNFYHLER----TVRELYGFKY-----------VVPTHQGRGAENLLS-QI---AIK--------------PGD- 111 (450)
T ss_pred hhcCCCcHHHHHH----HHHHHHCCCe-----------EEEcCCHHHHHHHHH-Hh---CCC--------------CcC-
Confidence 5888999999997 5567889873 899999999954321 11 111 012
Q ss_pred EEEecCCCcchHHHH-HHhcCCceEEeeCC----------CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERA-GLLGGVTIRGLPAD----------DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~d----------~~~~md~~~L~~~i~~ 286 (297)
.| +...|++-.++ ..+.|...+-|++| .+|.||+++|+++|.+
T Consensus 112 eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~ 165 (450)
T TIGR02618 112 YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDE 165 (450)
T ss_pred EE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhcc
Confidence 23 55788777777 57778755556543 3699999999999985
No 209
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=93.56 E-value=0.59 Score=43.19 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++.+.+++.+|.+.. .-++|+|++++...++.+ +. ..+ +++. +-+.+...
T Consensus 44 ~lr~~ia~~~~~~~~---------~I~it~Gs~~~l~~~~~~-----~~--------------~~~-vv~~-~P~y~~y~ 93 (332)
T PRK06425 44 DIEDQIKIYTQGLKI---------KVLIGPGLTHFIYRLLSY-----IN--------------VGN-IIIV-EPNFNEYK 93 (332)
T ss_pred HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHH-----hC--------------CCc-EEEe-CCChHHHH
Confidence 456678888888764 588999999988765532 11 112 3333 56777788
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALE 281 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~ 281 (297)
.+++..|.+++.||+|+ ..+|++.++
T Consensus 94 ~~~~~~G~~v~~vp~~~-~~~~~~~l~ 119 (332)
T PRK06425 94 GYAFTHGIRISALPFNL-INNNPEILN 119 (332)
T ss_pred HHHHHcCCeEEEEeCCc-ccCcHHHHh
Confidence 89999999999999876 455655544
No 210
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=93.36 E-value=1.1 Score=42.23 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.....++.++++++.|.+ .-+||+||++||..|+.++|..
T Consensus 80 ~~~~~~la~~l~~~~~~~-----------~v~~~~gg~eA~~~al~~a~~~ 119 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD-----------KVFFCNSGAEANEAAIKLARKY 119 (396)
T ss_pred CHHHHHHHHHHHhhcCCC-----------EEEECCCcHHHHHHHHHHHHHH
Confidence 456667778888887764 3889999999999999999875
No 211
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=93.30 E-value=1.4 Score=43.66 Aligned_cols=118 Identities=11% Similarity=0.014 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccccccccc-cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHH-HHHHH
Q psy1678 146 AIVADILSDSIACIGFTWI-ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAK-AKTMQ 223 (297)
Q Consensus 146 svl~d~l~~~lN~n~~~~~-~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR-~~~~~ 223 (297)
.++-++....++.+ |. ........|+.+-.|+.+.++..... ...-.-++|+|||++..+++.+-. +..+.
T Consensus 110 ~~~~~~~~~~~~~~---Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~----~~~~~V~it~Gat~al~~~~~~l~~~~ll~ 182 (521)
T TIGR03801 110 AFLYEMCDGIIGDN---YPVPDRMLPHSEKIVHQYLIQEMCGNKPP----PGEFDLFAVEGGTAAMCYIFDSLKANELLK 182 (521)
T ss_pred HHHHHHHHHhhcCC---CCCCCCCHHHHHHHHHHHHHhhccCCCCC----CCcCeEEEeCCHHHHHHHHHHHHhHhhcCC
Confidence 34455555555432 32 22334557766667877765532110 000147899999999988876522 22211
Q ss_pred HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc--CCceEEeeCCC--C-----CCcCHHHHHHHHH
Q psy1678 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG--GVTIRGLPADD--S-----YKLRGDALEAAIE 285 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l--g~~v~~Vp~d~--~-----~~md~~~L~~~i~ 285 (297)
+.-.|++..-+.......+.+. |+.++.|++++ . +++|.++|+++++
T Consensus 183 ---------------pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~ 238 (521)
T TIGR03801 183 ---------------KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD 238 (521)
T ss_pred ---------------CCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC
Confidence 1124555666666777777776 45677777753 2 7899999987654
No 212
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=93.07 E-value=3.9 Score=38.15 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=69.4
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
.|....+...+.+.+.+|+.+..|.+ -+ ...-++|+|+++++..++.+.. +. +.
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~~---------------~g 111 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLD-------PAAVLPVIGSKELVAWLPTLLG---LG---------------PG 111 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCC-------cccEEEccChHHHHHHHHHHHc---CC---------------CC
Confidence 34444445577888999999988764 21 1268899999998866443320 10 11
Q ss_pred eEEEecCCCcchHHHHHHhcCCceEEee------------------CCCCC-CcCHHHHHHHHHHHHHCCC
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVTIRGLP------------------ADDSY-KLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp------------------~d~~~-~md~~~L~~~i~~~~~~G~ 292 (297)
-.|++.+-+|+++..++..+|.+++.++ -++.| .|+.+.+++.++-+.+.|.
T Consensus 112 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~ 182 (364)
T PRK07865 112 DVVVIPELAYPTYEVGARLAGATVVRADSLTELGPQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGA 182 (364)
T ss_pred CEEEECCCCcccHHHHHHhcCCEEEecCChhhCCcccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 2466778889999999988887554442 23444 4577888888877777663
No 213
>KOG0259|consensus
Probab=93.00 E-value=0.82 Score=43.09 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=61.3
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|.-+.+.-..-+.|.+++-+-+...-+. -+-++|+|-++|+=+++.+- .+ ++-.
T Consensus 99 Yaps~G~~~AR~AVAeYl~~~l~~kl~a-------~DV~ltsGC~qAIe~~i~~L-----A~--------------p~aN 152 (447)
T KOG0259|consen 99 YAPSVGILPARRAVAEYLNRDLPNKLTA-------DDVVLTSGCSQAIELAISSL-----AN--------------PGAN 152 (447)
T ss_pred cCCccccHHHHHHHHHHhhcCCCCccCc-------CceEEeccchHHHHHHHHHh-----cC--------------CCCc
Confidence 3334344444455555555544433211 26889999999998887762 11 1223
Q ss_pred EEecCCCcchHHH-HHHhcCCceEEeeC--CCCCCcCHHHHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVER-AGLLGGVTIRGLPA--DDSYKLRGDALEAAIEEDLK 289 (297)
Q Consensus 243 i~~s~~aH~Si~K-aa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~~~~ 289 (297)
|+.+.-+ |++.. -|.+.|+.||+... .+++++|.+.+|+.+++.+.
T Consensus 153 ILlPrPG-fp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~ 201 (447)
T KOG0259|consen 153 ILLPRPG-FPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTV 201 (447)
T ss_pred eecCCCC-CchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCee
Confidence 4444322 23333 35678999998775 57899999999999988664
No 214
>PLN02242 methionine gamma-lyase
Probab=92.90 E-value=0.42 Score=46.03 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=53.6
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|... .++|+||++++..++.+.-. ... .|+
T Consensus 74 ~~Pt~~~LE~----~lA~l~g~~~-----------~l~~~sG~~Ai~~al~al~~------------------~GD-~Vl 119 (418)
T PLN02242 74 FNPTVLNLGR----QMAALEGTEA-----------AYCTASGMSAISSVLLQLCS------------------SGG-HVV 119 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHHhC------------------CCC-EEE
Confidence 3577777776 6778888853 67899999999988876411 011 355
Q ss_pred ecCCCcchHHHHH-----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAG-----LLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~Kaa-----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...+......+ +..|+.++.++.+ |+++|+++|++
T Consensus 120 ~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~ 161 (418)
T PLN02242 120 ASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVP 161 (418)
T ss_pred EcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCc
Confidence 6666544444433 3456666655543 78888877753
No 215
>PLN02955 8-amino-7-oxononanoate synthase
Probab=92.84 E-value=1.7 Score=42.50 Aligned_cols=95 Identities=9% Similarity=0.030 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH--HHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT--MQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
.+..++=+.|++++|.+. .++.+.|..||+.++.+--.-. +... + .....+..+|++=+.
T Consensus 147 ~~h~~LE~~LA~f~g~e~-----------all~sSGy~AN~~~i~aL~~~~~~~~~~---~----~~~~~~~d~i~~D~~ 208 (476)
T PLN02955 147 TYHRLLESSLADLKKKED-----------CLVCPTGFAANMAAMVAIGSVASLLAAS---G----KPLKNEKVAIFSDAL 208 (476)
T ss_pred HHHHHHHHHHHHHHCCCc-----------EEEECChHHHHHHHHHHHhhcccccccc---c----cccCCCCcEEEEecc
Confidence 344445567889999874 6788889999998886631100 0000 0 000123457788899
Q ss_pred CcchHHHHHHhc----CCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 249 AHSSVERAGLLG----GVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 249 aH~Si~Kaa~~l----g~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
.|.|+..++++. +..+++.+ .-|+++|++.|++..
T Consensus 209 ~HaSI~dG~~ls~~~~~a~~~~f~-----HND~~~Le~~L~~~~ 247 (476)
T PLN02955 209 NHASIIDGVRLAERQGNVEVFVYR-----HCDMYHLNSLLSSCK 247 (476)
T ss_pred chHHHHHHHHhccccCCceEEEeC-----CCCHHHHHHHHHhCC
Confidence 999999999987 45555554 347899999997654
No 216
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=92.75 E-value=1.3 Score=42.27 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.++.|.++.++|++..+++ .-+|+++|||||..|+++||.+
T Consensus 76 ~~~~~~~la~~l~~~~~~~-----------~v~f~~SGseA~e~Aik~ar~~ 116 (395)
T PRK03715 76 YNEPMAKLAGLLTQHSCFD-----------KVFFANSGAEANEGAIKLARKW 116 (395)
T ss_pred cCHHHHHHHHHHhhccCCC-----------EEEEeCCcHHHHHHHHHHHHHH
Confidence 3567777777887765443 3789999999999999999975
No 217
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.73 E-value=0.93 Score=43.83 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=57.3
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
....|....+|+ .++++.|.+ ..++|++|+.++..++.+. +. ... .
T Consensus 60 r~~~p~~~~Le~----~lA~leg~~-----------~al~~~sG~~Ai~~al~~l----l~--------------~GD-~ 105 (431)
T PRK08248 60 RIMNPTTDVFEK----RIAALEGGI-----------GALAVSSGQAAITYSILNI----AS--------------AGD-E 105 (431)
T ss_pred CCCCchHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-E
Confidence 344676677776 577888854 4899999999998888653 11 012 4
Q ss_pred EEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|+++...|.. +.+.+..+|++++.|+++ |+++|+++|++
T Consensus 106 Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~ 148 (431)
T PRK08248 106 IVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITD 148 (431)
T ss_pred EEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCC
Confidence 5667766643 334566678888888763 78888877753
No 218
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.73 E-value=0.93 Score=43.93 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=56.5
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+ ..+++++|+.|+..++.+. +. +.-.|+
T Consensus 67 ~~pt~~~le~----~la~l~g~~-----------~~v~fsSG~~Ai~~al~~l----l~---------------~Gd~VI 112 (437)
T PRK05613 67 TNPTVEALEN----RIASLEGGV-----------HAVAFASGQAAETAAILNL----AG---------------AGDHIV 112 (437)
T ss_pred cChHHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 4566666665 677888874 2667777778887666543 11 112577
Q ss_pred ecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 245 CSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 245 ~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++...|.+.. +.+.-+|+.++.|+ +.. |+++|+++|++.
T Consensus 113 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~ 155 (437)
T PRK05613 113 TSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPN 155 (437)
T ss_pred ECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCcc
Confidence 8888998874 34455788888887 332 888888888653
No 219
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=92.70 E-value=0.85 Score=43.18 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.++.+++++++|.+.. ...+||+|||++|..|++++|..
T Consensus 88 ~~la~~l~~~~~~~~~--------~~v~~~~sgsea~~~al~~~~~~ 126 (398)
T PRK03244 88 IALAERLVELLGAPEG--------GRVFFCNSGAEANEAAFKLARLT 126 (398)
T ss_pred HHHHHHHHHhCCCCCC--------CEEEEeCchHHHHHHHHHHHHHH
Confidence 4667788898885421 14899999999999999999863
No 220
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=92.68 E-value=2.4 Score=40.32 Aligned_cols=37 Identities=14% Similarity=-0.042 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.++.+.|+++.+.+ .-.|+++||+||..|++.||.+.
T Consensus 85 ~~l~~~l~~~~~~~-----------~~~~~~sGseA~e~a~klar~~~ 121 (403)
T PRK05093 85 LRLAKKLIDATFAE-----------RVFFANSGAEANEAAFKLARRYA 121 (403)
T ss_pred HHHHHHHHhhCCCC-----------EEEEeCchHHHHHHHHHHHHHHH
Confidence 34556667776543 37889999999999999999874
No 221
>PRK07050 cystathionine beta-lyase; Provisional
Probab=92.64 E-value=0.56 Score=44.74 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=47.2
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ .++++.|.. ..++|+|||+++..++.+. ++ +.-.|++
T Consensus 64 ~pt~~~Le~----~lA~l~g~~-----------~~l~~~sgt~Ai~~~l~al----~~---------------~GD~Vl~ 109 (394)
T PRK07050 64 TPTSLALAQ----RLAEIEGGR-----------HALLQPSGLAAISLVYFGL----VK---------------AGDDVLI 109 (394)
T ss_pred CHHHHHHHH----HHHHHhCCC-----------eEEEeccHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence 455556665 677888853 3889999999999988764 11 1124667
Q ss_pred cCCCcchHH----HHHHhcCCceEEeeC
Q psy1678 246 SDQAHSSVE----RAGLLGGVTIRGLPA 269 (297)
Q Consensus 246 s~~aH~Si~----Kaa~~lg~~v~~Vp~ 269 (297)
+...|.+.. ..+..+|++++.++.
T Consensus 110 ~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 110 PDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred ecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 777887644 455667887776654
No 222
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=92.61 E-value=2.8 Score=39.84 Aligned_cols=84 Identities=13% Similarity=-0.025 Sum_probs=50.6
Q ss_pred cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..|...++...+-+.+.+|+.+..|++-+. -.-++|+|++++... +.. .+. +.
T Consensus 70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~-l~~----~~~---------------~g 122 (409)
T PRK07590 70 RGYGPEQGYDFLREKIAENDYQARGCDISA-------DEIFISDGAKCDTGN-ILD----IFG---------------PD 122 (409)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-------hhEEECCCHHHHHHH-HHH----hcC---------------CC
Confidence 345445566677777888887777664221 257889999988654 221 111 11
Q ss_pred eEEEecCCCcchHHHHHHhcCCc-----------eEEeeCCC
Q psy1678 241 LVGYCSDQAHSSVERAGLLGGVT-----------IRGLPADD 271 (297)
Q Consensus 241 ~~i~~s~~aH~Si~Kaa~~lg~~-----------v~~Vp~d~ 271 (297)
-.|++.+-+.+....++...|.. ++.||+|+
T Consensus 123 d~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 164 (409)
T PRK07590 123 NTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTA 164 (409)
T ss_pred CEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeeccc
Confidence 13445555666667777777765 66777653
No 223
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=92.55 E-value=0.53 Score=44.84 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=53.5
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+. .+++++|+.++..++.+. +. ... .|+
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~~l~al----~~--------------~Gd-~Vi 102 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEA-----------AVATSSGMGAIAATLLTI----LK--------------AGD-HLI 102 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence 4566667776 6788888753 788999999888766543 11 012 355
Q ss_pred ecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|. .+.+.+..+|+.++.++.+ |+++++++|.+
T Consensus 103 ~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~ 143 (391)
T TIGR01328 103 SDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKD 143 (391)
T ss_pred EecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhcc
Confidence 6666553 3445566678777777665 67777777653
No 224
>PRK06234 methionine gamma-lyase; Provisional
Probab=92.48 E-value=0.74 Score=43.97 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=54.4
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+ ..++++||+.++..++.+. +. ... .|+
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~-----------~~l~~~sG~~Ai~~al~~l----l~--------------~Gd-~Vl 107 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGE-----------AAVVAASGMGAISSSLWSA----LK--------------AGD-HVV 107 (400)
T ss_pred CCccHHHHHH----HHHHHhCCC-----------cEEEEcCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence 4577777776 455666653 3688999999987776542 11 012 456
Q ss_pred ecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+. .+.+...|++++.++.+ |+++|+++|.+
T Consensus 108 ~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~ 148 (400)
T PRK06234 108 ASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKA 148 (400)
T ss_pred EecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhcc
Confidence 676766543 34556788888887754 78888887754
No 225
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.43 E-value=1.4 Score=42.44 Aligned_cols=82 Identities=16% Similarity=0.050 Sum_probs=54.5
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ .++++.|.+ ..+++++|+.|+..++.+.. . +.-.|++
T Consensus 62 ~p~~~~le~----~lA~l~g~~-----------~al~~~SG~~Ai~~al~all----~---------------pGd~VIv 107 (427)
T PRK05994 62 NPTNAVLEE----RVAALEGGT-----------AALAVASGHAAQFLVFHTLL----Q---------------PGDEFIA 107 (427)
T ss_pred CccHHHHHH----HHHHHhCCC-----------cEEEEcCHHHHHHHHHHHHh----C---------------CCCEEEE
Confidence 455556665 667778775 37889999999998877641 1 1114566
Q ss_pred cCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+...|.+.. ..+..+|+.++.|+++ |+++|+++|++
T Consensus 108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~ 147 (427)
T PRK05994 108 ARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITP 147 (427)
T ss_pred ecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCc
Confidence 777777543 3455678888777754 67777777753
No 226
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=92.37 E-value=0.76 Score=44.66 Aligned_cols=89 Identities=15% Similarity=0.026 Sum_probs=60.7
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.|..+|....+|+ .+++++|.+. .++|+.||.|+..+..+ ..+ ...
T Consensus 73 ~Yagd~s~~~LE~----~vAe~lG~e~-----------aV~v~sGTaAl~ll~~l----~v~--------------pGd- 118 (460)
T PRK13237 73 AYAGSRNFYHLEE----TVQEYYGFKH-----------VVPTHQGRGAENLLSRI----AIK--------------PGQ- 118 (460)
T ss_pred hhcCCCcHHHHHH----HHHHHHCCCe-----------EEEeCCHHHHHHHHHHh----CCC--------------CcC-
Confidence 4788899999998 4567788863 88999999998874221 111 012
Q ss_pred EEEecCCCcchHHHH-HHhcCCceEEeeC----------CCCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERA-GLLGGVTIRGLPA----------DDSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~ 286 (297)
+| +...|++-.++ ....|...+-|.+ ..+|.||++.|++.|.+
T Consensus 119 ~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~ 172 (460)
T PRK13237 119 YV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDE 172 (460)
T ss_pred EE--CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhcc
Confidence 22 66778877777 5556663333321 23799999999999975
No 227
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=92.34 E-value=2.4 Score=39.64 Aligned_cols=39 Identities=18% Similarity=0.010 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
....++-+++++++|.+ ..+++.||+++|..++.++|..
T Consensus 69 ~~~~~l~~~la~~~g~~-----------~~~~~~sg~~a~~~a~~~~~~~ 107 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD-----------RVFFCNSGAEANEAALKLARKY 107 (379)
T ss_pred HHHHHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHH
Confidence 34555667888888875 3789999999999999988753
No 228
>PRK05968 hypothetical protein; Provisional
Probab=92.31 E-value=1.6 Score=41.47 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=51.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ .+++++|.+. .+++++|+.++..++.+. +. ..+ .|++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~al~al----~~--------------~Gd-~Vl~ 107 (389)
T PRK05968 62 NPTVRAFEE----MLAKLEGAED-----------ARGFASGMAAISSTVLSF----VE--------------PGD-RIVA 107 (389)
T ss_pred ChhHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence 455566665 6688888853 567788888887777542 11 012 4566
Q ss_pred cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678 246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAI 284 (297)
Q Consensus 246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i 284 (297)
+...|.+ +.+.+...|++++.++.+ |++.|++++
T Consensus 108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i 145 (389)
T PRK05968 108 VRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKAL 145 (389)
T ss_pred eCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhc
Confidence 7777765 345667788888877654 666666665
No 229
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=92.22 E-value=2.3 Score=40.25 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+-+.|+++.|.+ ..+|+++||+||..|+++||.+.
T Consensus 88 l~~~l~~~~~~~-----------~~~~~~SGs~A~e~al~~a~~~~ 122 (401)
T PRK00854 88 LYEELAALTGSH-----------KVLPMNSGAEAVETAIKAVRKWG 122 (401)
T ss_pred HHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 344566777754 38899999999999999999763
No 230
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.19 E-value=0.63 Score=45.06 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=59.5
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|-...+|+ .++++.|.. ..+.|++|+.|+.+++.+. ++ +.-.|+
T Consensus 59 ~nPtv~~lE~----~la~leg~~-----------~av~~~SG~aAi~~al~al----l~---------------~GD~VI 104 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGV-----------GAVATASGQAAIMLAVLNI----CS---------------SGDHLL 104 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 3688888887 456677664 3788999999999999764 11 111567
Q ss_pred ecCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 245 ~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++.....+-... ...+|++++.|. ..+|++.|+++|++.
T Consensus 105 ~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd----~~~d~~~l~~~I~~~ 147 (432)
T PRK06702 105 CSSTVYGGTFNLFGVSLRKLGIDVTFFN----PNLTADEIVALANDK 147 (432)
T ss_pred ECCCchHHHHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHhCCcC
Confidence 777766544443 566788877773 358999999998753
No 231
>PRK07503 methionine gamma-lyase; Provisional
Probab=92.11 E-value=0.85 Score=43.61 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=53.9
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+. .+++++|+.++.+++.+. +. .+. .|+
T Consensus 63 ~~p~~~~le~----~lA~l~g~~~-----------~i~~~sG~~Al~~~l~~l----l~--------------~Gd-~Vi 108 (403)
T PRK07503 63 SNPTLALLEQ----RMASLEGGEA-----------AVALASGMGAITATLWTL----LR--------------PGD-EVI 108 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHHHHH----cC--------------CCC-EEE
Confidence 4566666665 6788888753 678888998877766532 11 012 355
Q ss_pred ecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.. ..+++..+|+.++.|+++ |+++|+++|++
T Consensus 109 v~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~ 149 (403)
T PRK07503 109 VDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISD 149 (403)
T ss_pred EccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCc
Confidence 66665543 334556678888888764 68888887754
No 232
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=92.08 E-value=2.5 Score=39.42 Aligned_cols=78 Identities=23% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
..+.+++.++.+++ .-++|+|+++++..++.+. . .++ .|++.+-+......
T Consensus 62 Lr~aia~~~~v~~~---------~I~it~G~~~~i~~~~~~l-----~--------------~g~-~vlv~~P~y~~~~~ 112 (360)
T PRK07392 62 LRLALAQHHQLPPE---------WILPGNGAAELLTWAGREL-----A--------------QLR-AVYLITPAFGDYRR 112 (360)
T ss_pred HHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh-----C--------------CCC-eEEEECCCcHHHHH
Confidence 44455555677664 5889999998877655431 1 012 45566677778889
Q ss_pred HHHhcCCceEEeeCCCCCC-----cCHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYK-----LRGDALEA 282 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~-----md~~~L~~ 282 (297)
++..+|++++.||.++++. .+++.+++
T Consensus 113 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 144 (360)
T PRK07392 113 ALRAFGATVKELPLPLDQPSPGLTLRLQTLPP 144 (360)
T ss_pred HHHHcCCeEEEEecccccCCcccccCHHHHHH
Confidence 9999999999999986543 45555544
No 233
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=92.02 E-value=2.5 Score=40.68 Aligned_cols=41 Identities=20% Similarity=-0.022 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..+.++.+.|+++++-.. ..-.|+++|||||..|+++||..
T Consensus 86 ~~~~~la~~L~~~~~~~~---------~~v~f~~SGseA~e~AlklAr~~ 126 (433)
T PRK08117 86 ESILKLAEELAEITPGGL---------DCFFFSNSGAEAIEGALKLAKHV 126 (433)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCcHHHHHHHHHHHHHHh
Confidence 444556667777772111 13688999999999999999975
No 234
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=91.97 E-value=0.87 Score=43.29 Aligned_cols=82 Identities=16% Similarity=0.010 Sum_probs=53.4
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|...++|+ .+++++|.+ ..++++||+.|+..++.+. +. +.-.|
T Consensus 50 ~~np~~~~lE~----~lA~l~g~~-----------~~l~~~sG~~Ai~~~l~~l----l~---------------~GD~V 95 (385)
T PRK08574 50 EENPTLRPLEE----ALAKLEGGV-----------DALAFNSGMAAISTLFFSL----LK---------------AGDRV 95 (385)
T ss_pred CCCccHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence 44577777776 567778864 3688899999998887653 11 11246
Q ss_pred EecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 244 YCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+++...|.+..+.+.. .|+.++.+. .|+++|+++|+
T Consensus 96 lv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~ 134 (385)
T PRK08574 96 VLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIK 134 (385)
T ss_pred EEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcC
Confidence 6788888887766543 466555543 24666666664
No 235
>PRK09275 aspartate aminotransferase; Provisional
Probab=91.71 E-value=2.2 Score=42.39 Aligned_cols=117 Identities=10% Similarity=0.019 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccccccccccCchhhHHHHHHHH-HHHHHcCCC--ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678 146 AIVADILSDSIACIGFTWIASPACTELEVVMLD-WLGKMLDLP--KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM 222 (297)
Q Consensus 146 svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~-~l~~llg~~--~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~ 222 (297)
..+-++....... .|...+..-.+=+.+++ ++.+-++.. .. ....-++|+||+++..+++.+-....+
T Consensus 116 ~~v~e~~~~~~~~---~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~------~~~~I~vT~Ga~~al~~~~~aL~~~~l 186 (527)
T PRK09275 116 EFVYELVDGIIGD---NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPK------GEFDLFAVEGGTAAMCYIFDSLKENGL 186 (527)
T ss_pred HHHHHHHHHHhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCC------CcCeEEEeCCHHHHHHHHHHHHhhhhc
Confidence 3444555444332 35544454444444555 555443321 10 012588999999999888875322111
Q ss_pred HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCce--EEeeCC--CCCCcCHHHHHHHHH
Q psy1678 223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTI--RGLPAD--DSYKLRGDALEAAIE 285 (297)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v--~~Vp~d--~~~~md~~~L~~~i~ 285 (297)
- .+.-.|++..-........+.+.|.++ +.++++ .++++|+++|++.+.
T Consensus 187 l--------------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~ 239 (527)
T PRK09275 187 L--------------KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD 239 (527)
T ss_pred C--------------CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC
Confidence 1 011235556666667777888886644 455544 358999999988664
No 236
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=91.62 E-value=1.1 Score=41.81 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++...+++.++.+++ .-++|+|+++++..++.+. . .. .|++.+-......
T Consensus 58 ~lr~~ia~~~~~~~~---------~i~it~Ga~~~l~~~~~~~-----~--------------~~--~v~i~~P~y~~~~ 107 (354)
T PRK06358 58 ELRKRIASFEQLDLE---------NVILGNGATELIFNIVKVT-----K--------------PK--KVLILAPTFAEYE 107 (354)
T ss_pred HHHHHHHHHhCCChh---------hEEECCCHHHHHHHHHHHh-----C--------------CC--cEEEecCChHHHH
Confidence 344556666677654 5889999999987766542 1 01 2445555666677
Q ss_pred HHHHhcCCceEEeeCCC--CCCcCHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADD--SYKLRGDALEAAI 284 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i 284 (297)
.++..+|.+++.+|+++ .+.+| +.+.+.+
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~ 138 (354)
T PRK06358 108 RALKAFDAEIEYAELTEETNFAAN-EIVLEEI 138 (354)
T ss_pred HHHHHcCCeeEEEeCccccCCCcc-HHHHHhh
Confidence 78888899999999874 35788 5554444
No 237
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=91.33 E-value=2.2 Score=41.88 Aligned_cols=95 Identities=15% Similarity=0.034 Sum_probs=59.1
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe-
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC- 245 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~- 245 (297)
....++|..+.+..+++||..+..+ ...+=++.|+.+|+.++.+-- . +.-.|++
T Consensus 76 ~~~d~lE~~~~~~~~~~f~~~~~~~------~~nv~~~SG~~AN~av~~aL~----~---------------pgD~Il~~ 130 (475)
T PLN03226 76 EYIDQIETLCQKRALEAFRLDPEKW------GVNVQPLSGSPANFAVYTALL----Q---------------PHDRIMGL 130 (475)
T ss_pred hhHHHHHHHHHHHHHHHhCCCccee------EEecCcCchHHHHHHHHHHhC----C---------------CCCEEEEC
Confidence 3567899999999999999876421 001113778999988877641 1 1113444
Q ss_pred --cC---CCcchHHHHHHhcCCce--E--EeeCC-CCCCcCHHHHHHHHHH
Q psy1678 246 --SD---QAHSSVERAGLLGGVTI--R--GLPAD-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 --s~---~aH~Si~Kaa~~lg~~v--~--~Vp~d-~~~~md~~~L~~~i~~ 286 (297)
+. .+|-|+..++++-+..+ . ..++| ++|.+|+++|++.+.+
T Consensus 131 d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~ 181 (475)
T PLN03226 131 DLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML 181 (475)
T ss_pred CCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh
Confidence 22 44555555544433322 2 33445 5799999999999875
No 238
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=91.22 E-value=0.97 Score=42.83 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
++-+.+++++|.+ ..+++++|+.++..++. .+. +.-.|+++...|.+..
T Consensus 51 ~le~~la~l~g~~-----------~~l~~~sG~~al~~~l~-----ll~---------------~Gd~Vl~~~~~y~~~~ 99 (378)
T TIGR01329 51 ALESLLAKLDKAD-----------RAFAFSSGMAALDVITR-----LLN---------------NGDEIIAGDDLYGGTD 99 (378)
T ss_pred HHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHH-----HhC---------------CCCEEEEcCCCchHHH
Confidence 3445788888884 36777788766543221 121 1114667778887765
Q ss_pred H----HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 255 R----AGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 255 K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+ .+..+|++++.|+++ |+++|+++|+
T Consensus 100 ~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~ 129 (378)
T TIGR01329 100 RLLTQVVPRSGVVVVHVDTT-----DLDKVKAALG 129 (378)
T ss_pred HHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcC
Confidence 5 345578888888864 7888888875
No 239
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=91.19 E-value=2.6 Score=40.11 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
...++|+ .+++++|.++ .++.+.|+.+|+.++.+. .. +.-.|++++
T Consensus 44 ~~~~LE~----~lA~~~g~e~-----------al~~~sG~~a~~~~i~~l----~~---------------~GD~Vl~~~ 89 (392)
T PLN03227 44 AHLELEQ----CMAEFLGTES-----------AILYSDGASTTSSTVAAF----AK---------------RGDLLVVDR 89 (392)
T ss_pred HHHHHHH----HHHHHhCCCc-----------EEEecCcHHHHHHHHHHh----CC---------------CCCEEEEec
Confidence 3445555 6677888753 667777888888666552 11 122678899
Q ss_pred CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
..|.|+..++.+.+.+++.++.+ |.+.|++.++.
T Consensus 90 ~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~ 123 (392)
T PLN03227 90 GVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQ 123 (392)
T ss_pred cccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHH
Confidence 99999999988888877776654 34555554443
No 240
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=91.19 E-value=1.5 Score=40.85 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
..+.+++.++.+++ .-++|+|++++...++.+. .. ... .|++.+-+......
T Consensus 70 lr~~ia~~~~~~~~---------~I~it~G~~~al~~~~~~~----~~--------------~gd-~V~v~~P~y~~~~~ 121 (357)
T PRK14809 70 LTAALADRWDVSPE---------QVWLANGGDGALDYLARAM----LD--------------PGD-TVLVPDPGFAYYGM 121 (357)
T ss_pred HHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHh----cC--------------CCC-EEEEeCCChHHHHH
Confidence 44555666677653 5889999999887665542 11 012 34455555445566
Q ss_pred HHHhcCCceEEeeCCC--CCCcCHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADD--SYKLRGDALEAAI 284 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~--~~~md~~~L~~~i 284 (297)
++...|.+++.||++. ++.+|.+++.+.+
T Consensus 122 ~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~ 152 (357)
T PRK14809 122 SARYHHGEVREYPVSKADDFEQTADTVLDAY 152 (357)
T ss_pred HHHHcCCeEEEEecccCcCCCcCHHHHHHhh
Confidence 7778899999888863 4677887776654
No 241
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=91.18 E-value=0.86 Score=44.13 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=64.0
Q ss_pred cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678 161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 240 (297)
Q Consensus 161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~ 240 (297)
..|..+|....+|. .+++++|++. .++|..|+.+|..+..+.-. +. |.++.- ...+
T Consensus 68 D~Y~gdpSv~~Lee----~vael~G~E~-----------alpthqGRgaE~Il~~~~~~----~~---g~e~g~--~~~~ 123 (467)
T TIGR02617 68 EAYSGSRSYYALAE----SVKNIFGYQY-----------TIPTHQGRGAEQIYIPVLIK----KR---EQEKGL--DRSK 123 (467)
T ss_pred cccccCchHHHHHH----HHHHHhCCce-----------EEECCCCchHHHHHHHhhcc----cc---cccccc--cccc
Confidence 35888999999987 5578999974 78998899999888765321 00 100000 0001
Q ss_pred eEEEecCCCcchHHH-HHHhcCCceEEeeC----------CCCCCcCHHHHHHHHHHH
Q psy1678 241 LVGYCSDQAHSSVER-AGLLGGVTIRGLPA----------DDSYKLRGDALEAAIEED 287 (297)
Q Consensus 241 ~~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~~ 287 (297)
. +++...||---+ .+.+.|..++.+++ +.+|.||++.|++.|++.
T Consensus 124 ~--~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~ 179 (467)
T TIGR02617 124 M--VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEV 179 (467)
T ss_pred c--ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhc
Confidence 1 233344544333 45567877766543 247999999999999864
No 242
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=91.18 E-value=4.2 Score=37.85 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=65.8
Q ss_pred CchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 166 SPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
......+.+.+.+|+.+..|.+ -. ...-++|+|++++...++.+.- .. +.-.|+
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~~---------------~gd~Vl 109 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLD-------PTAVLPVIGTKELVAWLPTLLG---LG---------------PGDTVV 109 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCC-------cCeEEEccChHHHHHHHHHHHc---CC---------------CCCEEE
Confidence 3445678888999998887765 21 1257889999998766543310 00 112466
Q ss_pred ecCCCcchHHHHHHhcCCceEEe------------------eCCCCC-CcCHHHHHHHHHHHHHCC
Q psy1678 245 CSDQAHSSVERAGLLGGVTIRGL------------------PADDSY-KLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 245 ~s~~aH~Si~Kaa~~lg~~v~~V------------------p~d~~~-~md~~~L~~~i~~~~~~G 291 (297)
+.+-++++...++..+|.+++.| |.++.| .++.+.+++.++-+.+.|
T Consensus 110 ~~~p~y~~~~~~~~~~g~~~~~v~~~~~l~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~ 175 (357)
T TIGR03539 110 IPELAYPTYEVGALLAGATPVAADDPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERG 175 (357)
T ss_pred ECCCCcHHHHHHHHhcCCEEeccCChhhcCccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcC
Confidence 77888888888888887644333 334555 467788888777777666
No 243
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=91.09 E-value=1.3 Score=41.67 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=50.5
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ .++++.|.+. .++++||+.++..++ +. +. .+. .|++
T Consensus 51 ~pt~~~le~----~la~l~g~~~-----------~~~~~sG~~ai~~~~-~l----l~--------------~Gd-~Vl~ 95 (366)
T PRK08247 51 NPTRGVLEQ----AIADLEGGDQ-----------GFACSSGMAAIQLVM-SL----FR--------------SGD-ELIV 95 (366)
T ss_pred CchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHH-HH----hC--------------CCC-EEEE
Confidence 455566665 6788888863 588999998776543 21 11 012 3455
Q ss_pred cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+...+.+ +.+.+..+|++++.++. .|+++|+++|++
T Consensus 96 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~ 135 (366)
T PRK08247 96 SSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITP 135 (366)
T ss_pred ecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhccc
Confidence 5555544 34455667888877765 377888777754
No 244
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=91.07 E-value=0.84 Score=43.63 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=53.6
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|....+|+ .+++++|.+. .+++++|+.++..++.+. +. +.-.|
T Consensus 61 ~~~p~~~~le~----~lA~l~g~~~-----------~i~~ssG~~Ai~~~l~al----l~---------------~GD~V 106 (398)
T PRK08249 61 NTNPTVQAFEE----KVRILEGAEA-----------ATAFSTGMAAISNTLYTF----LK---------------PGDRV 106 (398)
T ss_pred CCChHHHHHHH----HHHHHhCCCe-----------EEEeCChHHHHHHHHHHh----cC---------------CCCEE
Confidence 44566667776 6788888643 677888888888777653 11 11146
Q ss_pred EecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...|.+.. ..+..+|++++.++. .|++.|+++|++
T Consensus 107 i~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~ 148 (398)
T PRK08249 107 VSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAK 148 (398)
T ss_pred EEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCC
Confidence 67778887643 334556776665543 577777777753
No 245
>PRK08354 putative aminotransferase; Provisional
Probab=90.97 E-value=1.5 Score=40.07 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K 255 (297)
+.+++++.+|- ..++|+|+++++...+.+. . +.-.|++.+-+++...+
T Consensus 45 l~~~ia~~~~~------------~I~vt~G~~~al~~~~~~~----~----------------~gd~vlv~~P~y~~~~~ 92 (311)
T PRK08354 45 LEEEFSKLFGE------------PIVITAGITEALYLIGILA----L----------------RDRKVIIPRHTYGEYER 92 (311)
T ss_pred HHHHHHHHHCC------------CEEECCCHHHHHHHHHHhh----C----------------CCCeEEEeCCCcHHHHH
Confidence 45678888772 3889999999976544221 1 01146677889999999
Q ss_pred HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 256 AGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+++.+|.+++.++ +|++.|++.++
T Consensus 93 ~~~~~g~~~~~~~------~d~~~l~~~~~ 116 (311)
T PRK08354 93 VARFFAARIIKGP------NDPEKLEELVE 116 (311)
T ss_pred HHHHcCCEEeecC------CCHHHHHHhhc
Confidence 9999998876653 45666665543
No 246
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=90.92 E-value=2.2 Score=40.76 Aligned_cols=82 Identities=13% Similarity=0.074 Sum_probs=50.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|-...+|+ .+++++|.+. ..++++|+.++..++.+. +. ... .|++
T Consensus 64 ~p~~~~Le~----~lA~l~G~~~-----------~~~~~sG~~Ai~~~l~~~----l~--------------~Gd-~Vl~ 109 (398)
T PRK07504 64 NPTVDMFEK----RMCALEGAED-----------ARATASGMAAVTAAILCQ----VK--------------AGD-HVVA 109 (398)
T ss_pred CchHHHHHH----HHHHHhCCCe-----------eeEecCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence 466666665 6778889864 456788898887666542 11 011 4556
Q ss_pred cCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 246 SDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 246 s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+...+.+.. ..+..+|+.++.++ .+|++.|+++|++
T Consensus 110 ~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~ 149 (398)
T PRK07504 110 ARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRP 149 (398)
T ss_pred cCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCc
Confidence 666665433 33445677777664 3678888777753
No 247
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=90.76 E-value=1.2 Score=42.70 Aligned_cols=85 Identities=13% Similarity=0.008 Sum_probs=55.0
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
....|....+|+ .++++.|.+ ..+++++|+.++..++.+. +. +.-.
T Consensus 66 r~~~p~~~~le~----~lA~l~g~~-----------~al~~~sG~~Ai~~~l~al----l~---------------~Gd~ 111 (403)
T PRK07810 66 RYGNPTVSMFEE----RLRLIEGAE-----------ACFATASGMSAVFTALGAL----LG---------------AGDR 111 (403)
T ss_pred CCCCchHHHHHH----HHHHHhCCC-----------cEEEECChHHHHHHHHHHH----hC---------------CCCE
Confidence 345566667776 567888865 3788999999998876553 11 1114
Q ss_pred EEecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|+++...|. ...+.+...|++++.|+.+ |+++|+++|++
T Consensus 112 Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~ 154 (403)
T PRK07810 112 LVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSV 154 (403)
T ss_pred EEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence 556665552 2345566678888777643 77888877754
No 248
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=90.42 E-value=3.6 Score=38.99 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..++.+.|+++.+.+ .-.|+++||+||..|+++||.+
T Consensus 84 ~~~l~~~l~~~~~~~-----------~~~~~~SGseA~e~Alk~a~~~ 120 (396)
T PRK04073 84 LGPWYEKVAKLTGKD-----------MVLPMNTGAEAVETAIKAARRW 120 (396)
T ss_pred HHHHHHHHHhcCCCC-----------eEEEcCChHHHHHHHHHHHHHH
Confidence 334455666776643 3788999999999999999976
No 249
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=90.40 E-value=1.4 Score=41.68 Aligned_cols=89 Identities=16% Similarity=-0.006 Sum_probs=58.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC-ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG-TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts-GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
++.+..+-.++.+-+++++|.++. ..-+|++ +||+++-.++..- +. .++..++
T Consensus 43 ~~~f~~~~~~~r~~l~~l~~~~~~--------~~v~~~~gs~T~~~~~~~~~l----~~--------------~~~~~vi 96 (378)
T PRK03080 43 QKPVKALLKRVIEGTRELLSLPEG--------YEVGIVPGSDTGAWEMALWSL----LG--------------ARRVDHL 96 (378)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCchHHHHHHHHHhc----CC--------------CCcceEE
Confidence 355667777899999999999753 1366665 7888876666432 11 0122233
Q ss_pred ecCCCcchHHH--HHHhcCC-ceEEeeCCCCCCcCHHHHH
Q psy1678 245 CSDQAHSSVER--AGLLGGV-TIRGLPADDSYKLRGDALE 281 (297)
Q Consensus 245 ~s~~aH~Si~K--aa~~lg~-~v~~Vp~d~~~~md~~~L~ 281 (297)
+ ...|.+-.. +++.+|+ +++.++++..+..|+++++
T Consensus 97 ~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~ 135 (378)
T PRK03080 97 A-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD 135 (378)
T ss_pred E-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC
Confidence 3 346666444 3456799 9999999877788877644
No 250
>PRK12403 putative aminotransferase; Provisional
Probab=89.98 E-value=3.9 Score=39.89 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....++.+.|+++++..-+ .-.|+++|||||-.|+++||.+.
T Consensus 97 ~~~~~~lae~L~~~~p~~~~---------~v~f~~SGseA~e~AiklAr~~~ 139 (460)
T PRK12403 97 HPAVIELSELLFSLLPGHYS---------HAIYTNSGSEANEVLIRTVRRYW 139 (460)
T ss_pred CHHHHHHHHHHHHhCCCCcC---------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 34455566777788763211 37899999999999999999864
No 251
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=89.76 E-value=3 Score=39.35 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+-+.+++++|++. -+|+++||+||..|+..+|.+.
T Consensus 76 ~~~~~~l~~~~~~~~-----------~~~~~SGs~A~e~al~~~~~~~ 112 (400)
T PTZ00125 76 GLAEKYITDLFGYDK-----------VLPMNSGAEAGETALKFARKWG 112 (400)
T ss_pred HHHHHHHHhCCCCCE-----------EEEeCCcHHHHHHHHHHHHHHH
Confidence 344455566666643 6789999999999999998753
No 252
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=89.72 E-value=2 Score=40.01 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
.+.+++++.+|.+++ .-++|+|++++...++.+. . ..+. ++. .-+.....
T Consensus 59 ~lr~~ia~~~~~~~~---------~i~it~Ga~~~l~~~~~~l-----~--------------~g~v-iv~-~P~y~~~~ 108 (356)
T PRK08056 59 HLHQALARHHQVPAS---------WILAGNGETESIFAVVSGL-----K--------------PRRA-MIV-TPGFAEYR 108 (356)
T ss_pred HHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh-----C--------------CCCE-EEe-CCCcHHHH
Confidence 466788888888764 5788999999877665432 1 0122 332 23344556
Q ss_pred HHHHhcCCceEEeeCCCC--CCcCHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDS--YKLRGDALEAAI 284 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i 284 (297)
..++..|.+++.||.+++ +.+| +++.+.+
T Consensus 109 ~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~ 139 (356)
T PRK08056 109 RALQQVGCEIRRYSLREADGWQLT-DAILEAL 139 (356)
T ss_pred HHHHHcCCeEEEEecccccCCCcc-HHHHHhc
Confidence 678888999999998743 3454 2343433
No 253
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=89.43 E-value=9.6 Score=37.00 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....++.+.|++++..+. ..-.|+++|||||-.|++.||.+.
T Consensus 116 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~t 158 (442)
T TIGR03372 116 DPLRALLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQ 158 (442)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHH
Confidence 3344556677777764321 137899999999999999999874
No 254
>KOG0258|consensus
Probab=89.41 E-value=13 Score=35.41 Aligned_cols=109 Identities=17% Similarity=0.055 Sum_probs=74.2
Q ss_pred cccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCC
Q psy1678 159 IGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII 238 (297)
Q Consensus 159 n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~ 238 (297)
..+.|..|.+...+-+.|-+.+-+.=|.|.+. .+..+|+|+|.++.+-|..--. +
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p-------~dI~LT~GAS~ai~~il~l~~~---------~--------- 159 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPADP-------EDIFLTTGASPAIRSILSLLIA---------G--------- 159 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccCCCCCH-------HHeeecCCCcHHHHHHHHHHhc---------C---------
Confidence 55678888888888888888888888976432 3689999999988776655311 1
Q ss_pred CceEEEecCCCcchHHH-HHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCcc
Q psy1678 239 ANLVGYCSDQAHSSVER-AGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIP 294 (297)
Q Consensus 239 ~~~~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~P 294 (297)
++.-|+++ ...|-..- ...++|...+.-..|+ +|.+|++.|++.+++.+ +|..|
T Consensus 160 ~~~GvliP-iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~ 216 (475)
T KOG0258|consen 160 KKTGVLIP-IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINP 216 (475)
T ss_pred CCCceEee-cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCc
Confidence 01111222 23333333 3356777666656664 89999999999999988 77655
No 255
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=88.72 E-value=5 Score=37.63 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=31.6
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG 261 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg 261 (297)
.+|+++|||||..|+..||... + ++.+|.....-|-|..-++.+.|
T Consensus 87 ~~~~~SGseA~~~Al~~ar~~~-------~---------~~~vv~~~~~yHg~~~~~~~~~~ 132 (375)
T PRK04260 87 AFFCNSGAEANEAAIKIARKAT-------G---------KQEIITFQNSFHGRTFGSMSATG 132 (375)
T ss_pred EEEcCccHHHHHHHHHHHHHhc-------C---------CCeEEEECCCcCcccHHHHhccC
Confidence 6899999999999999998641 1 12244445666766666655433
No 256
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=88.45 E-value=8.4 Score=36.70 Aligned_cols=37 Identities=16% Similarity=-0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.++.+.|+++.+.+ .-.|+++|||||..|+++||.+.
T Consensus 84 ~~la~~l~~~~~~~-----------~v~~~~sGseA~e~Alk~ar~~~ 120 (406)
T PRK12381 84 LRLAKKLIDATFAD-----------RVFFCNSGAEANEAALKLARKYA 120 (406)
T ss_pred HHHHHHHHhhCCCC-----------eEEEcCCcHHHHHHHHHHHHHHH
Confidence 34555666666543 37899999999999999999763
No 257
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=88.25 E-value=1.2 Score=42.16 Aligned_cols=91 Identities=18% Similarity=0.032 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
+=..++..+.+++|++.. ...+.++..| |+..++|++.| . .+ ..+. |+.|...|
T Consensus 57 ltn~l~~d~~~~~G~~~~--------~~~~~vP~atgm~l~l~l~~l~-~-r~--------------~a~~-Viw~ridq 111 (389)
T PF05889_consen 57 LTNSLVLDALRLAGLRSV--------KSCFVVPMATGMSLTLCLLALR-M-RP--------------KAKY-VIWPRIDQ 111 (389)
T ss_dssp HHHHHHHHHHHHTTHTTH--------CEEEEESS-HHHHHHHHHHHHH-H-HC--------------T--E-EEEEEEET
T ss_pred HHHHHHHHHHHHcCCccc--------cceEEEecccccHHHHHHHHHh-c-cc--------------CCce-EEEeeccc
Confidence 333455556677899853 1245555555 44555666655 2 11 1243 55688999
Q ss_pred chHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHHHH
Q psy1678 251 SSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEED 287 (297)
Q Consensus 251 ~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~~~ 287 (297)
+|..||+...|++++.||.. +.-..|.+.+++.|++.
T Consensus 112 kSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~ 151 (389)
T PF05889_consen 112 KSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL 151 (389)
T ss_dssp HHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH
T ss_pred cchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh
Confidence 99999999999999999963 34577888888888543
No 258
>PRK05939 hypothetical protein; Provisional
Probab=88.18 E-value=2.8 Score=40.07 Aligned_cols=83 Identities=20% Similarity=0.087 Sum_probs=52.7
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|....+|+ -++++.|... .+.+++|+.|+..++.+. +. ... .|
T Consensus 44 ~g~p~~~~lE~----~la~leg~~~-----------~v~~ssG~~Ai~~~l~al----l~--------------~Gd-~V 89 (397)
T PRK05939 44 QGTPTTAALEA----KITKMEGGVG-----------TVCFATGMAAIAAVFLTL----LR--------------AGD-HL 89 (397)
T ss_pred CCCHHHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHH----cC--------------CCC-EE
Confidence 34677788887 4567777653 566667788877766543 11 012 35
Q ss_pred EecCCCc---chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 244 YCSDQAH---SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 244 ~~s~~aH---~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+++...| .++.+++...|+.++.++++ |+++|+++|+
T Consensus 90 v~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~ 129 (397)
T PRK05939 90 VSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIR 129 (397)
T ss_pred EECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCC
Confidence 5566654 45556666778888888763 6777777764
No 259
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=87.81 E-value=3.4 Score=39.78 Aligned_cols=43 Identities=30% Similarity=0.204 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.+++|-++-..++++++.-+ ---|++.||||++.|+.+||-..
T Consensus 91 Pte~Ei~~Aell~~~~p~~e----------~vrfvnSGTEAtmsAiRlARa~T 133 (432)
T COG0001 91 PTELEVELAELLIERVPSIE----------KVRFVNSGTEATMSAIRLARAYT 133 (432)
T ss_pred CCHHHHHHHHHHHHhcCccc----------EEEEecchhHHHHHHHHHHHHhh
Confidence 46788888899999997743 27789999999999999999863
No 260
>PRK06767 methionine gamma-lyase; Provisional
Probab=87.56 E-value=5.5 Score=37.79 Aligned_cols=82 Identities=15% Similarity=0.032 Sum_probs=46.6
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+ ..+++++|+.++..++.+. .. +.-.|+
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~-----------~al~~~sG~~Ai~~~l~al----~~---------------~Gd~Vv 104 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGE-----------EALAFGSGMAAISATLIGF----LK---------------AGDHII 104 (386)
T ss_pred CCcchHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 4566666665 677888864 3788888888776665442 11 111456
Q ss_pred ecCCCcchHHHHHH----hcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAGL----LGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 245 ~s~~aH~Si~Kaa~----~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
++...|.+...... ..|+.+..++. .|+++|+++|+
T Consensus 105 ~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~ 144 (386)
T PRK06767 105 CSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIR 144 (386)
T ss_pred EcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhC
Confidence 66666655444433 23444444432 25666666654
No 261
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=87.52 E-value=2.3 Score=40.71 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=58.7
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE-
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY- 244 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~- 244 (297)
....-+||..+++.+.+|||..+..++ .-+=.-+||.||+.++.+- ++. ...++-
T Consensus 61 ~~~id~iE~la~~ra~~lF~~~~~~w~------anvqp~SGs~An~av~~aL----l~p--------------GD~Im~l 116 (399)
T PF00464_consen 61 CEYIDEIEELAIERAKELFGAEPKEWY------ANVQPHSGSQANLAVYMAL----LKP--------------GDTIMGL 116 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHT-STTTEE------EE---SSHHHHHHHHHHHH----T-T--------------T-EEEEE
T ss_pred cchhhHHHHHHHHHHHHHhCCCcccce------EEeecCCchHHHHHHHHHH----Hhh--------------cCcEEec
Confidence 345678999999999999999854211 1223367899997776653 110 112222
Q ss_pred -ecCCCcchHHHHHHh-------cCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678 245 -CSDQAHSSVERAGLL-------GGVTIRGLPAD-DSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 245 -~s~~aH~Si~Kaa~~-------lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~ 288 (297)
.+.-.|.|--..+.. ..++++..++| +++.+|.++|++.+++-+
T Consensus 117 ~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k 169 (399)
T PF00464_consen 117 SLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK 169 (399)
T ss_dssp EGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-
T ss_pred ChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC
Confidence 234467665443333 23478888999 789999999999998754
No 262
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=87.25 E-value=10 Score=36.36 Aligned_cols=131 Identities=16% Similarity=0.085 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHH-HHH------HHhccccccccccCch--hhHHHHHHH
Q psy1678 107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVA-DIL------SDSIACIGFTWIASPA--CTELEVVML 177 (297)
Q Consensus 107 ~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~-d~l------~~~lN~n~~~~~~~p~--~~~iE~~v~ 177 (297)
.+.+..+++.++++...++.. .+.|.|.=+-+.-.++++- .++ ++.. + .-.+.|.+ -..+|-+
T Consensus 55 ~~~sE~e~l~~l~~ia~kN~~---~~sfiG~GyY~~~~P~vI~rnile~pewyTaYT-P--YQpEISQGrLqaLfefQ-- 126 (450)
T COG0403 55 KPLSEYEALAELKEIASKNKV---FTSFIGAGYYDTYTPPVILRNILENPEWYTAYT-P--YQPEISQGRLEALFEFQ-- 126 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCch---hhhhccCcccCCcCcHHHHHHhhcCccccccCC-C--CchhhhhHHHHHHHHHH--
Confidence 446899999999998776652 2335443333333344443 222 2111 0 01122322 2334444
Q ss_pred HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH
Q psy1678 178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG 257 (297)
Q Consensus 178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa 257 (297)
.++++|.|++-. ..-+.-|||-+ -.|+..|+.... .++-.+++++..|+.-....
T Consensus 127 tlv~dLTGm~VA---------NASm~DeaTAa-AEAm~ma~r~~k---------------~k~~~~~V~~~vhpqt~~Vl 181 (450)
T COG0403 127 TLVADLTGLDVA---------NASMLDEATAA-AEAMLMAKRVTK---------------KKRNKFLVPKDVHPQTLDVL 181 (450)
T ss_pred HHHHHHhCCCcc---------cchhhhhHHHH-HHHHHHHHHhhc---------------CcCceEEecCCCCHHHHHHH
Confidence 378999999852 34455566633 334444433211 12346888999999877665
Q ss_pred H----hcCCceEEeeCC
Q psy1678 258 L----LGGVTIRGLPAD 270 (297)
Q Consensus 258 ~----~lg~~v~~Vp~d 270 (297)
+ -+|+.|+.++.+
T Consensus 182 ~Tra~~~g~~i~~~~~~ 198 (450)
T COG0403 182 RTRAEGLGIEIEVVDAD 198 (450)
T ss_pred HhhcccCceEEEEeccc
Confidence 4 356777777665
No 263
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=87.19 E-value=5.2 Score=38.75 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=51.4
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+. .+++++|+.|+..++.+. +. +.-.|+
T Consensus 67 ~~p~~~~Le~----~lA~l~g~~~-----------av~~sSG~aAi~~al~al----l~---------------~Gd~Vv 112 (436)
T PRK07812 67 MNPTQDVVEQ----RIAALEGGVA-----------ALLLASGQAAETFAILNL----AG---------------AGDHIV 112 (436)
T ss_pred CCchHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 3566666765 6678888753 788999999988887543 11 111455
Q ss_pred ecCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 245 CSDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 245 ~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
++...|.+.... +.-.|+.++.++ |. -|+++|+++|+
T Consensus 113 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~ 153 (436)
T PRK07812 113 SSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVR 153 (436)
T ss_pred EeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCC
Confidence 666666665443 333566666654 22 27777777665
No 264
>PLN02624 ornithine-delta-aminotransferase
Probab=86.85 E-value=10 Score=37.17 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
...++.+.|++++|++ .-.|+++|||||-.|++.||.+.
T Consensus 118 ~~~~la~~L~~~~~~~-----------~~~f~~SGseA~e~AlklAr~~~ 156 (474)
T PLN02624 118 KFPEFAEYLTSMFGYD-----------MVLPMNTGAEGVETAIKLARKWG 156 (474)
T ss_pred HHHHHHHHHHhhcCCC-----------eEEEeCChHHHHHHHHHHHHHHH
Confidence 3334555666667764 37889999999999999999863
No 265
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=86.64 E-value=12 Score=36.44 Aligned_cols=43 Identities=19% Similarity=0.062 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....++.+.|++++.... ..-.|+++|||||-.|++.||.+.
T Consensus 123 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~t 165 (459)
T PRK11522 123 DPLRAMLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQ 165 (459)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCchHHHHHHHHHHHHHh
Confidence 3344455666777763221 137899999999999999999864
No 266
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=86.55 E-value=7.5 Score=36.72 Aligned_cols=34 Identities=26% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..+.++++.|++ ..+|+++|||||-.|+++||.+
T Consensus 71 la~~l~~~~~~~-----------~v~~~~SGseA~e~Alklar~~ 104 (364)
T PRK04013 71 MLEELSKWVNYE-----------YVYMGNSGTEAVEAALKFARLY 104 (364)
T ss_pred HHHHHHhhcCCC-----------EEEEeCchHHHHHHHHHHHHHH
Confidence 334455666664 3789999999999999999976
No 267
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=86.40 E-value=2.4 Score=40.25 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC---cc
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA---HS 251 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a---H~ 251 (297)
++.+.+++|+|.+.. -++..|-|--|++--..++.....-.+.. ..|.+ ..+...+|+.-. |+
T Consensus 73 e~r~l~a~llgv~~~----------~viv~gNSSL~lM~d~i~~a~~~G~~~~~-~PW~~---~~~vKfLCPvPGYDRHF 138 (425)
T PF12897_consen 73 EARELFAELLGVPPE----------NVIVGGNSSLNLMHDTISRAMLHGVPGSE-TPWCK---EEKVKFLCPVPGYDRHF 138 (425)
T ss_dssp HHHHHHHHHHTS-GG----------GEEE-SS-HHHHHHHHHHHHHHH--TT-S-S-GGG---SS--EEEEEES--HHHH
T ss_pred HHHHHHHHHhCCCHH----------HEEEeccchHHHHHHHHHHHHhcCCCCCC-CCchh---ccCceEEecCCCchHHH
Confidence 466789999999974 67778888888888888887755432110 11222 246778887544 55
Q ss_pred hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
+| ++.+|+..+.||.+++| -|.+.+++.+.+|
T Consensus 139 ai---~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D 170 (425)
T PF12897_consen 139 AI---TEHFGIEMIPVPMTEDG-PDMDMVEELVAED 170 (425)
T ss_dssp HH---HHHCT-EEEEEEEETTE-E-HHHHHHHTHTS
T ss_pred HH---HHhhCcEEEecCCCCCC-CCHHHHHHHHhcC
Confidence 54 66799999999999885 6999999988654
No 268
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=86.15 E-value=4.2 Score=38.93 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=48.2
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+| +.++++.|.+ .++++++|++++.+++.+. +. ... .|+
T Consensus 58 ~~p~~~~Le----~~lA~l~g~~-----------~~v~~~sG~~Ai~~~l~al----l~--------------pGD-~Vv 103 (405)
T PRK08776 58 GNPTRDLLG----EALAELEGGA-----------GGVITATGMGAINLVLNAL----LQ--------------PGD-TLV 103 (405)
T ss_pred CChHHHHHH----HHHHHHhCCC-----------ceEEEcCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence 344545555 5677888863 3788888998886665543 11 012 344
Q ss_pred ecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 245 CSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 245 ~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
++...+.. +...+...|+.++.++. .|++.|+++|+
T Consensus 104 v~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~ 143 (405)
T PRK08776 104 VPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALA 143 (405)
T ss_pred EccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcC
Confidence 55556554 33444445666666654 36777777664
No 269
>PRK07046 aminotransferase; Validated
Probab=85.24 E-value=1.7 Score=42.38 Aligned_cols=41 Identities=24% Similarity=0.134 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.+..|.++.+.|+++++++ .-.|+++|||||..|+++||.+
T Consensus 113 ~~~~~~~lAe~l~~~~~~~-----------~v~F~nSGtEA~e~AlrlAR~~ 153 (453)
T PRK07046 113 PSEDAAWVGEELARRFGLP-----------YWQVATTATDANRFVLRWARAV 153 (453)
T ss_pred CCHHHHHHHHHHHHHhCCC-----------EEEEECCHHHHHHHHHHHHHHh
Confidence 3567777888899988643 3689999999999999999986
No 270
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=85.22 E-value=4.5 Score=38.42 Aligned_cols=83 Identities=22% Similarity=0.086 Sum_probs=50.2
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+. ++++++|++++..++.+. +. +.-.|+
T Consensus 59 ~~p~~~~Le~----~lA~~~g~~~-----------~i~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl 104 (388)
T PRK07811 59 GNPTRTALEE----QLAALEGGAY-----------GRAFSSGMAATDCLLRAV----LR---------------PGDHIV 104 (388)
T ss_pred CCccHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence 3466666666 5677777753 566778898888877654 11 111466
Q ss_pred ecCCCcchHHHHH-Hh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAG-LL---GGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~Kaa-~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+..... .+ .|+.++.++. .|+++|+++|.+
T Consensus 105 ~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~ 145 (388)
T PRK07811 105 IPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITP 145 (388)
T ss_pred EcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCc
Confidence 6777776543332 22 3555555543 377877777754
No 271
>KOG0257|consensus
Probab=85.07 E-value=22 Score=34.00 Aligned_cols=118 Identities=15% Similarity=0.114 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 145 PAIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 145 ~svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
+..+.+.+..+..-. ..-+...-+..++-+.+.+.+++++|-.-. ....-.+|.|+.++.+.++++--+
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~------~~~eVlVT~GA~~ai~~~~~~l~~---- 115 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLD------PDDEVLVTAGANEAISSALLGLLN---- 115 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccC------CcccEEEecCchHHHHHHHHHHcC----
Confidence 345555555444332 112223334456666777778886654211 113589999999999998887422
Q ss_pred HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--------CCCCcCHHHHHHHHHHH
Q psy1678 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--------DSYKLRGDALEAAIEED 287 (297)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--------~~~~md~~~L~~~i~~~ 287 (297)
+.-.|++-+-.-.|-.-...+.|-..+.||.. .++.+|.+.|+.+|.+.
T Consensus 116 ---------------~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k 172 (420)
T KOG0257|consen 116 ---------------PGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK 172 (420)
T ss_pred ---------------CCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCC
Confidence 11134445667777778888888877777765 57899999999988653
No 272
>KOG0256|consensus
Probab=84.27 E-value=7.3 Score=37.24 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
+...+-+.+.+.+.+.-|.+..+ ....-++|.|+|-+|-+-+-+--+ .|. ..+++.
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~f-----dP~~~Vv~~G~T~ane~l~fcLad--------pgd-----------afLvPt 177 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKF-----DPERVVVTNGATSANETLMFCLAD--------PGD-----------AFLVPT 177 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCcc-----CccceEEecccchhhHHHHHHhcC--------CCc-----------eeeecC
Confidence 34456666777777776665432 123588899999888655444211 011 122222
Q ss_pred CCcchHHHHHHh-cCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCc
Q psy1678 248 QAHSSVERAGLL-GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKI 293 (297)
Q Consensus 248 ~aH~Si~Kaa~~-lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~ 293 (297)
---.-+++-+++ .|++++.|.++. .+++++++||+++++.++.|..
T Consensus 178 PyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~k 226 (471)
T KOG0256|consen 178 PYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLK 226 (471)
T ss_pred CCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCc
Confidence 222234444443 578888888863 5799999999999999988864
No 273
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=84.27 E-value=8.5 Score=36.91 Aligned_cols=43 Identities=19% Similarity=-0.087 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++.-.- ..-.|+++|||||-.|++.||.+.
T Consensus 84 ~~~~~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~A~klar~~~ 126 (423)
T PRK05964 84 HEPAERLAQRLVALTPGGL---------DHVFFSDSGSVAVEVALKMALQYW 126 (423)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3444556677777763111 147899999999999999999863
No 274
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=84.05 E-value=1.7 Score=41.16 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=63.5
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
|..+-..-++|..+++...+|||..-. -+=-..||.||+.+..+--+. |. .=+-
T Consensus 64 YgGce~VD~vE~laierak~LFga~~a----------nVQPhSGs~AN~av~~All~p--------GD--------timg 117 (413)
T COG0112 64 YGGCEYVDEVEELAIERAKKLFGAEYA----------NVQPHSGSQANQAVYLALLQP--------GD--------TIMG 117 (413)
T ss_pred cCCCeeHHHHHHHHHHHHHHHhCCCcc----------ccCCCCchHHHHHHHHHHcCC--------CC--------eEec
Confidence 445566788999999999999998731 222346899998777663211 10 0001
Q ss_pred EEecCCCcchHHHHHHhcC--CceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAGLLGG--VTIRGLPAD-DSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa~~lg--~~v~~Vp~d-~~~~md~~~L~~~i~~~~ 288 (297)
+-.+.-.|-+--.-..+.| ++++.-++| +++.+|.+++++.+.+.+
T Consensus 118 m~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k 166 (413)
T COG0112 118 LDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK 166 (413)
T ss_pred ccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC
Confidence 1123334433332222334 488888999 579999999999998754
No 275
>PRK08064 cystathionine beta-lyase; Provisional
Probab=84.01 E-value=6.5 Score=37.39 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=50.3
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|....+|+ .++++.|.+. .++++.|+.++..++. .+. ..+ .|
T Consensus 51 ~~~p~~~~le~----~lA~l~g~~~-----------~v~~~sG~~ai~~~l~-----~l~--------------~Gd-~V 95 (390)
T PRK08064 51 SGNPTREALED----IIAELEGGTK-----------GFAFASGMAAISTAFL-----LLS--------------KGD-HV 95 (390)
T ss_pred CCChhHHHHHH----HHHHHhCCCC-----------eEEECCHHHHHHHHHH-----HhC--------------CCC-EE
Confidence 34566666665 6778888753 4556666766554442 111 011 35
Q ss_pred EecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...|.+.. +.+...|+.++.|+.+ |+++|+++|++
T Consensus 96 lv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~ 137 (390)
T PRK08064 96 LISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKP 137 (390)
T ss_pred EEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC
Confidence 66777776433 4556678888888764 57777777643
No 276
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=84.00 E-value=16 Score=33.56 Aligned_cols=85 Identities=11% Similarity=-0.074 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
...+.+++.+|.+ .-++|+|++++....+.+ . .++ .|++.+-+.....
T Consensus 53 ~Lr~~ia~~~~~~-----------~I~it~Gs~~al~~~~~~------~--------------~gd-~v~v~~P~y~~~~ 100 (330)
T PRK05664 53 GLEAAARAYYGAP-----------QLLPVAGSQAAIQALPRL------R--------------APG-RVGVLSPCYAEHA 100 (330)
T ss_pred HHHHHHHHHhCCC-----------CEEECcCHHHHHHHHHHc------c--------------CCC-EEEEcCCChHHHH
Confidence 4456677777753 488999999987665321 0 012 3556667777788
Q ss_pred HHHHhcCCceEEeeC-------------------CCCC-CcCHHHHHHHHHHHHHCC
Q psy1678 255 RAGLLGGVTIRGLPA-------------------DDSY-KLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~-------------------d~~~-~md~~~L~~~i~~~~~~G 291 (297)
++++.+|++++.||+ ++.| .|+.+.|++.++.+.+.|
T Consensus 101 ~~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~ 157 (330)
T PRK05664 101 HAWRRAGHQVRELDEAEVEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARG 157 (330)
T ss_pred HHHHHcCCeEEEechhhHhhhhcCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcC
Confidence 888888887666653 3333 566677777666665555
No 277
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=83.85 E-value=10 Score=36.15 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=66.5
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
..+|.+..+=+++++.|..++|-.... .-+++++||.+.-.|+.. ..++ | .+.
T Consensus 31 h~s~~F~~~~~~~~~~L~~v~~t~~~~--------~~ll~gsGt~amEAav~s----l~~p----g---------dkV-- 83 (383)
T COG0075 31 HRSPDFVGIMKEVLEKLRKVFGTENGD--------VVLLSGSGTLAMEAAVAS----LVEP----G---------DKV-- 83 (383)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCc--------EEEEcCCcHHHHHHHHHh----ccCC----C---------CeE--
Confidence 567888888899999999999987421 466777777554333332 1110 1 122
Q ss_pred EecCCCcc--hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 244 YCSDQAHS--SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 244 ~~s~~aH~--Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++....=| -+.+-+...|.+++.|.+...-.+|+++++++|+++
T Consensus 84 Lv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~ 129 (383)
T COG0075 84 LVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD 129 (383)
T ss_pred EEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC
Confidence 22223333 456777888999999999977799999999999843
No 278
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=83.70 E-value=11 Score=35.41 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=57.2
Q ss_pred HHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678 176 MLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE 254 (297)
Q Consensus 176 v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~ 254 (297)
+..-+++..| .+.. .-+.+.|++|.+-..+.+... .++ .++++.-+-....
T Consensus 62 l~~a~a~~~~~~~~~---------~V~~gnGsde~i~~l~~~~~~------------------~gd-~vl~~~Ptf~~Y~ 113 (356)
T COG0079 62 LRAALAEYYGVVDPE---------NVLVGNGSDELIELLVRAFVE------------------PGD-TVLIPEPTFSMYE 113 (356)
T ss_pred HHHHHHHHhCCCCcc---------eEEEcCChHHHHHHHHHHhhc------------------CCC-EEEEcCCChHHHH
Confidence 4456677777 4432 355578888877554444321 011 3445556666667
Q ss_pred HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
.+|...|..++.||.++ +++|++++.+.+.+
T Consensus 114 ~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~ 144 (356)
T COG0079 114 IAAQLAGAEVVKVPLKE-FRLDLDAILAAIRD 144 (356)
T ss_pred HHHHhcCCeEEEecccc-cccCHHHHHHhhhc
Confidence 78999999999999999 99999999998887
No 279
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=83.66 E-value=5.5 Score=37.85 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=47.3
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|....+|+ +++++.|.+ ..++|+||++++..++.+. +. +.-.|++
T Consensus 51 ~pt~~~L~~----~lA~l~g~~-----------~~i~~~sg~~Ai~~~l~~l----~~---------------~GD~Vl~ 96 (386)
T PRK08045 51 NPTRDVVQR----ALAELEGGA-----------GAVLTNTGMSAIHLVTTVF----LK---------------PGDLLVA 96 (386)
T ss_pred CccHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHH----cC---------------CCCEEEE
Confidence 455555554 778888843 4889999999888777642 11 1124666
Q ss_pred cCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 246 SDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 246 s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+...|.+... .+...|+.++.++ ..|+++|+++++
T Consensus 97 ~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~ 135 (386)
T PRK08045 97 PHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALA 135 (386)
T ss_pred cCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcc
Confidence 7777764332 2222344444442 256777776664
No 280
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=83.18 E-value=15 Score=35.38 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++..-+ .-.|+++|||||-.|++.||.+
T Consensus 92 ~~~~~~la~~l~~~~p~~~----------~v~f~~sGseA~e~AlklAr~~ 132 (428)
T PRK12389 92 TELEIEFAKMLKEAIPSLE----------KVRFVNSGTEAVMTTIRVARAY 132 (428)
T ss_pred CHHHHHHHHHHHHhCCCCc----------EEEEeCCHHHHHHHHHHHHHHh
Confidence 4455567777777764211 4789999999999999999986
No 281
>PRK06917 hypothetical protein; Provisional
Probab=83.03 E-value=7.4 Score=37.77 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++.... ..-.||++|||||-.|++.||.+.
T Consensus 73 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~~ 115 (447)
T PRK06917 73 SEPAEKLAKKLSDLSPGDL---------NWSFFVNSGSEANETAMKIAIQHF 115 (447)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCChHHHHHHHHHHHHHHH
Confidence 4555667788888874322 147899999999999999999874
No 282
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=82.90 E-value=5.8 Score=37.15 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=55.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT-ASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG-GT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
|-..++=.++.+.+.+++|.|++ ..-+|++| ||+++-.++..- ..+ + .+-+++.+
T Consensus 33 ~~f~~~~~~~~~~l~~l~~~~~~--------~~v~~~~gsgT~a~ea~~~nl----~~~----~--------~~~l~i~~ 88 (349)
T TIGR01364 33 KEFEAVANEAESDLRELLNIPDN--------YEVLFLQGGATGQFAAVPLNL----LAE----G--------KVADYIVT 88 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchHHHHHHHHhc----CCC----C--------CeEEEEEC
Confidence 43446666799999999998643 24667766 998876655542 110 1 13356777
Q ss_pred cCCCcchHHHHHHhcCCceEEeeCCCCC----CcCHHHHH
Q psy1678 246 SDQAHSSVERAGLLGGVTIRGLPADDSY----KLRGDALE 281 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~----~md~~~L~ 281 (297)
+..+|-+. +-|..+|+ +..+.+++.+ ..|++.++
T Consensus 89 G~fg~r~~-~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 126 (349)
T TIGR01364 89 GAWSKKAA-KEAKKYGV-VNVVASGKEGNYTKIPDPSTWE 126 (349)
T ss_pred CHHHHHHH-HHHHHhCC-cEEEeccccCCCCCCCCHHhcC
Confidence 78888774 44555688 8888876544 34555443
No 283
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=82.74 E-value=7.3 Score=36.92 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.7
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
...|-...+|+. ++++.|.+ ..++|+||+.|+..++.+.
T Consensus 47 ~gnPt~~~lE~~----lA~l~g~~-----------~~~~~~sG~~Ai~~al~al 85 (377)
T TIGR01324 47 RGTLTHFALQDA----MCELEGGA-----------GCYLYPSGLAAVTNSILAF 85 (377)
T ss_pred CCCccHHHHHHH----HHHHhCCC-----------cEEEECcHHHHHHHHHHHh
Confidence 345777788874 55667754 3788999999999888653
No 284
>PRK05965 hypothetical protein; Provisional
Probab=82.49 E-value=4.1 Score=39.69 Aligned_cols=43 Identities=12% Similarity=-0.129 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++..+. ..-.|+++|||||-.||+.||.+.
T Consensus 89 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGSEAve~AlKlAr~~~ 131 (459)
T PRK05965 89 SEPAIRLAAKLAERAPGSL---------NHVYFTLGGSDAVDSAVRFIRHYW 131 (459)
T ss_pred CHHHHHHHHHHHhhCCCCc---------CEEEEeCChhHHHHHHHHHHHHHH
Confidence 3444456667777763211 147899999999999999999874
No 285
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=82.40 E-value=32 Score=34.39 Aligned_cols=83 Identities=11% Similarity=0.084 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678 177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA 256 (297)
Q Consensus 177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka 256 (297)
-+..|+.+|.+.+ -.++.|.|-||...+.+. . .+.-.|++....|-|+.-+
T Consensus 76 qe~aA~~fgAd~t----------yFvvNGTS~ank~vi~a~----~---------------~~GD~VLvdRN~HKSi~~g 126 (557)
T COG1982 76 QELAARVFGADHT----------YFVVNGTSTANKAVINAV----L---------------TPGDKVLVDRNCHKSIHHG 126 (557)
T ss_pred HHHHHHHhCCCce----------EEEECCccHHHHHHHHhh----c---------------CCCCEEEecCCccHHHHHH
Confidence 3578999999875 456788888888777664 1 1223577899999999999
Q ss_pred HHhcCCceEEeeC--CC----CCCcCHHHHHHHHHHHH
Q psy1678 257 GLLGGVTIRGLPA--DD----SYKLRGDALEAAIEEDL 288 (297)
Q Consensus 257 a~~lg~~v~~Vp~--d~----~~~md~~~L~~~i~~~~ 288 (297)
..+.|...+.+.. |+ -|.++.+.+++++.+..
T Consensus 127 lilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~ 164 (557)
T COG1982 127 LILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHP 164 (557)
T ss_pred HHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhCh
Confidence 8888985554443 33 36899999999886643
No 286
>PLN02271 serine hydroxymethyltransferase
Probab=82.17 E-value=7.6 Score=38.90 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
+-..-+||..+++...++||.+...+ +.-+---.||.||+.++++- +. ... +|++
T Consensus 189 ~~~iD~iE~la~era~~lF~~~~~~~------gaNVQp~SGs~AN~aV~~AL----l~--------------PGD-~IL~ 243 (586)
T PLN02271 189 NQYIDQIERLCCERALAAFGLDSEKW------GVNVQPYSCTSANFAVYTGL----LL--------------PGD-RIMG 243 (586)
T ss_pred ChhHHHHHHHHHHHHHHHhCCccccc------ccceeeccHHHHHHHHHHHh----cC--------------CCC-EEEE
Confidence 34456899999999999999874210 11233457999999887653 11 011 2333
Q ss_pred -c--CCCcchHH------HHHHhcCCceEEee--CC-CCCCcCHHHHHHHHH
Q psy1678 246 -S--DQAHSSVE------RAGLLGGVTIRGLP--AD-DSYKLRGDALEAAIE 285 (297)
Q Consensus 246 -s--~~aH~Si~------Kaa~~lg~~v~~Vp--~d-~~~~md~~~L~~~i~ 285 (297)
+ .-+|.|-- +-+...|+.+..+| +| ++|.+|.++|++...
T Consensus 244 ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~ 295 (586)
T PLN02271 244 LDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKAL 295 (586)
T ss_pred ecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhh
Confidence 2 35666643 34455677666666 76 689999999998653
No 287
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=81.89 E-value=7.8 Score=37.39 Aligned_cols=83 Identities=17% Similarity=0.034 Sum_probs=49.0
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+ ..+++++|++++..++.+... ... .|+
T Consensus 56 ~~pt~~~Le~----~lA~l~g~~-----------~~l~~ssG~~Ai~~al~al~~------------------~Gd-~Vl 101 (425)
T PRK06084 56 MNPTNDVLEQ----RVAALEGGV-----------GALAVASGMAAITYAIQTIAE------------------AGD-NIV 101 (425)
T ss_pred CCchHHHHHH----HHHHHhCCC-----------ceeEehhHHHHHHHHHHHHhC------------------CCC-EEE
Confidence 3455556665 667777743 378899999999888876421 011 345
Q ss_pred ecCCCcchHHHHH-H---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVERAG-L---LGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~Kaa-~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...+......+ . ..|+.+..++. .|+++|+++|++
T Consensus 102 ~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~ 142 (425)
T PRK06084 102 SVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDE 142 (425)
T ss_pred EeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhcc
Confidence 5555554333332 2 24555555543 378888888764
No 288
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=81.75 E-value=35 Score=32.99 Aligned_cols=45 Identities=18% Similarity=0.011 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+....++.+.|++++...... ...-.++++|||||-.|++.||.+
T Consensus 81 ~~~~~~lae~L~~~~p~~~~~------~~~~f~~~sGsEA~e~AlklAr~~ 125 (442)
T TIGR00709 81 TPLKDAFIEALLNIIPKRKMD------YKLQFPGPSGADAVEAAIKLAKTY 125 (442)
T ss_pred cHHHHHHHHHHHHhCCCcCCC------ccEEEeCCCHHHHHHHHHHHHHHh
Confidence 345555677788887432100 011344689999999999999986
No 289
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=81.75 E-value=39 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..++.+.|++.+...+ .-+||+||||||..|+++||..
T Consensus 90 ~~~lae~l~~~~~~~~----------~v~~~~sGseA~e~Alk~ar~~ 127 (423)
T TIGR00713 90 EILLAKEIISRVPSVE----------MVRFVNSGTEATMSAVRLARGY 127 (423)
T ss_pred HHHHHHHHHHhCCccc----------EEEEeCCHHHHHHHHHHHHHHh
Confidence 3445666667664332 3789999999999999999985
No 290
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=81.73 E-value=7 Score=37.12 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=62.3
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
....+|...++=+++.+.|.++++.|.+. ..-+++++||.+.=.++.. .+.+ ....
T Consensus 30 ~~HRs~~F~~i~~e~~~~L~~l~~~~~~~-------~v~~l~GsGT~a~Eaa~~n----l~~~-------------~g~~ 85 (374)
T TIGR01365 30 RSHRSKLGKEKLAEAIKKTREMLGVPADY-------LIGIVPASDTGAVEMALWS----MLGC-------------RGVD 85 (374)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEECCchHHHHHHHHHH----cCCC-------------CCCe
Confidence 33568888889899999999999986432 2366788888765443333 1110 0112
Q ss_pred EEEecCCCcchHH---HHHHhcCC-ceEEeeCCCCCCcCHHHHH
Q psy1678 242 VGYCSDQAHSSVE---RAGLLGGV-TIRGLPADDSYKLRGDALE 281 (297)
Q Consensus 242 ~i~~s~~aH~Si~---Kaa~~lg~-~v~~Vp~d~~~~md~~~L~ 281 (297)
+++++ .|+-+ +.|..+|+ ++..+..+..-.+|++.++
T Consensus 86 vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve 126 (374)
T TIGR01365 86 VLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVD 126 (374)
T ss_pred EEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcC
Confidence 44443 55544 67777999 5888887766688999887
No 291
>PRK07678 aminotransferase; Validated
Probab=81.64 E-value=5.5 Score=38.72 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+.++.+.|+++++... .-.|+++|||||-.|++.||.+.
T Consensus 89 ~~~~~lae~l~~~~~~~~----------~v~f~~sGseA~e~AlklAr~~t 129 (451)
T PRK07678 89 EPAIKLAEKLNEWLGGEY----------VIFFSNSGSEANETAFKIARQYH 129 (451)
T ss_pred HHHHHHHHHHHHhCCCCC----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence 344456677777775432 37899999999999999999864
No 292
>PRK07049 methionine gamma-lyase; Validated
Probab=81.19 E-value=17 Score=35.06 Aligned_cols=84 Identities=21% Similarity=0.116 Sum_probs=48.4
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
.|-...+|+ -++++.|.+ ..++++||+.++..++.+.-+ ... .|++
T Consensus 82 ~Pt~~~Le~----~lA~leg~~-----------~~iv~~sG~~Ai~~~l~al~~------------------~Gd-~Vv~ 127 (427)
T PRK07049 82 HPNSEIVED----RLAVYEGAE-----------SAALFSSGMSAIATTLLAFVR------------------PGD-VILH 127 (427)
T ss_pred CcCHHHHHH----HHHHHhCCC-----------cEEEEccHHHHHHHHHHHHhC------------------CCC-EEEE
Confidence 466666766 556677743 478899999987766655311 011 3445
Q ss_pred cCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 246 SDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 246 s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
++......... +..+|++++.++ + ..|.++|++.|++.
T Consensus 128 ~~p~Y~~~~~~~~~~l~~~Gi~~v~~~-~---~~d~~~l~~~l~~~ 169 (427)
T PRK07049 128 SQPLYGGTETLLAKTFRNFGVGAVGFA-D---GLSEAAIGAAAEAA 169 (427)
T ss_pred cCCCcccHHHHHHHHHHhcCcEEEEEe-C---CCCHHHHHHHHHhh
Confidence 55555544443 344566655554 1 24666777666544
No 293
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=80.67 E-value=8.4 Score=36.69 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=28.3
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
...|....+|+ -++++.|.. ..++|+||++++..++.+.
T Consensus 50 ~~npt~~~Le~----~lA~leg~e-----------~ivvt~gg~~Ai~~~l~al 88 (388)
T PRK08861 50 SGNPNRGLLEQ----TLSELESGK-----------GAVVTNCGTSALNLWVSAL 88 (388)
T ss_pred CCCchHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHH
Confidence 34566666776 567777753 4899999999998888663
No 294
>PRK07671 cystathionine beta-lyase; Provisional
Probab=80.53 E-value=7.8 Score=36.65 Aligned_cols=82 Identities=15% Similarity=0.063 Sum_probs=46.8
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++.|.+. .++++.|+.++..+ ... +. +.-.|+
T Consensus 48 ~~p~~~~Le~----~lA~l~g~~~-----------~~~~~sG~aai~~~-~~~----l~---------------~Gd~Vi 92 (377)
T PRK07671 48 GNPTRAALEE----LIAVLEGGHA-----------GFAFGSGMAAITAV-MML----FS---------------SGDHVI 92 (377)
T ss_pred CChHHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHH-HHH----hC---------------CCCEEE
Confidence 3455666665 6788888753 56677777554432 211 11 111456
Q ss_pred ecCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 245 CSDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
++...|.+..+ .+..+|+.++.|+. .|+++|+++|++
T Consensus 93 v~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~ 133 (377)
T PRK07671 93 LTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRP 133 (377)
T ss_pred ECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCC
Confidence 67776663333 33446777777754 277888777754
No 295
>PRK07481 hypothetical protein; Provisional
Probab=80.31 E-value=5.9 Score=38.48 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|+++++.+.- ..-.|+++|||||-.|+++||.+.
T Consensus 85 ~~~~~~lae~L~~~~~~~~~--------~~v~f~~sGsEAve~AlklAr~~~ 128 (449)
T PRK07481 85 HPRAIELSYELIDMFAPEGM--------RRVFFSSGGSDSVETALKLARQYW 128 (449)
T ss_pred CHHHHHHHHHHHHhcCCCCC--------CEEEEcCchHHHHHHHHHHHHHHH
Confidence 34455567778888742211 147899999999999999999864
No 296
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=79.98 E-value=8.8 Score=36.39 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.1
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
..|....+|+ .++++.|- + ..++|+||++++..++.+.
T Consensus 49 ~~p~~~~le~----~lA~l~g~-~----------~v~~~~gg~~Ai~~~l~al 86 (382)
T TIGR02080 49 GNPTRDLLQQ----ALAELEGG-A----------GAVVTNTGMSAIHLVTTAL 86 (382)
T ss_pred CCchHHHHHH----HHHHHhCC-C----------cEEEEcCHHHHHHHHHHHH
Confidence 3455556665 77888873 2 4889999999998777653
No 297
>PRK08114 cystathionine beta-lyase; Provisional
Probab=79.35 E-value=8.5 Score=36.82 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=55.5
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
....|-...+|+. ++.|-|.. .++++++|+.|+..++++- +. +.-.
T Consensus 58 R~~nPt~~~le~~----la~LEg~~-----------~a~~~~SGmaAi~~~~~~l----l~---------------~GD~ 103 (395)
T PRK08114 58 RRGTLTHFSLQEA----MCELEGGA-----------GCALYPCGAAAVANAILAF----VE---------------QGDH 103 (395)
T ss_pred CCCChhHHHHHHH----HHHHhCCC-----------eEEEEhHHHHHHHHHHHHH----cC---------------CCCE
Confidence 3456888888874 45665553 4777888999998888753 11 1114
Q ss_pred EEecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 243 GYCSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 243 i~~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
|+++...|.+..+.+ .-+|++++.++. .|.+.++++|++
T Consensus 104 Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~~ 146 (395)
T PRK08114 104 VLMTGTAYEPTQDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQP 146 (395)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcCC
Confidence 778888887777655 335888877764 245666666643
No 298
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=79.06 E-value=7 Score=37.56 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
...+.++.++|++++...+ .-.||++|||||..|+++||..
T Consensus 89 ~~~~~~la~~L~~~~~~~~----------~v~~~~sGseA~e~Aik~a~~~ 129 (426)
T PRK00062 89 TELEVELAELVIELVPSIE----------MVRMVNSGTEATMSAIRLARGY 129 (426)
T ss_pred CHHHHHHHHHHHHhCCCCC----------EEEEecCHHHHHHHHHHHHHHH
Confidence 4455667888888763222 3789999999999999999986
No 299
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=78.80 E-value=6.8 Score=37.98 Aligned_cols=41 Identities=15% Similarity=-0.074 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..+.+..+.|+++++... ..-.|+++|||||-.|++.||.+
T Consensus 84 ~~~~~la~~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~ 124 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDN---------PKVSFGLSGSDANDGAIKFARAY 124 (443)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEcCCHHHHHHHHHHHHHHh
Confidence 344456677778775431 14789999999999999999976
No 300
>PRK07480 putative aminotransferase; Validated
Probab=78.80 E-value=6.5 Score=38.28 Aligned_cols=43 Identities=12% Similarity=-0.053 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|+++++.+- ..-.|+++|||||-.||++||.+.
T Consensus 93 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseA~e~AlklAr~~~ 135 (456)
T PRK07480 93 HPPAIELAAKLAEVAPPGF---------NHVFFTNSGSEANDTVLRMVRHYW 135 (456)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3444556677777774221 147899999999999999999863
No 301
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=78.75 E-value=19 Score=34.07 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s 246 (297)
+....+-..+.+|+.+. +.+++ .-++|+|++++... +.. .+.. .+ .|++.
T Consensus 75 ~g~~~lr~aia~~~~~~-~~~~d---------~I~it~Ga~~al~~-l~~----l~~~--------------gd-~Vlv~ 124 (402)
T TIGR03542 75 QGYPFLREAIAENDYRG-RIDPE---------EIFISDGAKCDVFR-LQS----LFGS--------------DN-TVAVQ 124 (402)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHH---------HEEECCCcHHHHHH-HHH----hcCC--------------CC-EEEEe
Confidence 34445555555554322 34443 58899999987764 221 1110 11 35556
Q ss_pred CCCcchHHHHHHhcCC-----------ceEEeeCCC
Q psy1678 247 DQAHSSVERAGLLGGV-----------TIRGLPADD 271 (297)
Q Consensus 247 ~~aH~Si~Kaa~~lg~-----------~v~~Vp~d~ 271 (297)
.-+.+....++...|+ +++.||+++
T Consensus 125 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~ 160 (402)
T TIGR03542 125 DPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTK 160 (402)
T ss_pred CCCCcchHHHHHHcCCccccccccccceEEEeecch
Confidence 6667777778888888 777777754
No 302
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=78.66 E-value=5.1 Score=37.66 Aligned_cols=95 Identities=7% Similarity=-0.041 Sum_probs=58.5
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC 245 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (297)
++-..++=.++.+.+++++|.|++ ..-+|++|++.+-+.|...- .... + .+-+++..
T Consensus 43 ~~~f~~~~~~~~~~l~~l~~~~~~--------~~v~~~~gsgt~~~Ea~~~n---l~~~----g--------~~~l~i~~ 99 (360)
T PRK05355 43 SKEFEAVAEEAEADLRELLNIPDN--------YKVLFLQGGASLQFAMVPMN---LLGG----G--------KKADYVDT 99 (360)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEEcCCchHHHHHHHHh---cCCC----C--------CeEEEEEC
Confidence 333446667899999999998643 13667766666655554432 1110 1 13457777
Q ss_pred cCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHH-HHH
Q psy1678 246 SDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEA-AIE 285 (297)
Q Consensus 246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~-~i~ 285 (297)
+..+|-+.+-+-+ .|.. ..++++. .|..+..++++ +|+
T Consensus 100 G~fg~r~~~~a~~-~g~~-~~~~~~~~~g~~~~~~~~~~~l~ 139 (360)
T PRK05355 100 GSWSKKAIKEAKK-YGEV-NVAASSEDDGFTYIPPLDEWQLS 139 (360)
T ss_pred CHHHHHHHHHHHH-hCCc-eEEecccccCCCCCCChhhccCC
Confidence 8888887544444 4654 6677664 67777666665 554
No 303
>KOG0634|consensus
Probab=78.32 E-value=11 Score=36.22 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=53.4
Q ss_pred CCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCH
Q psy1678 198 GGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRG 277 (297)
Q Consensus 198 ~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~ 277 (297)
.+-++|+|.|.+-..++.+.-++ .-.|++=+.+-.|--.+.+-+|++++.|+.|++ .|++
T Consensus 125 wdiiit~G~t~~l~~~l~~~~N~-------------------gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~-Gi~p 184 (472)
T KOG0634|consen 125 WDIIITNGNTDGLFKVLRTLINR-------------------GDHVLIEEYTYPSALQSMEALGVKIIPVKMDQD-GIDP 184 (472)
T ss_pred ceEEEecCCchHHHHHHHHhhcC-------------------CCceEEecccchHHHHhccccCceEEeccccCC-CCCH
Confidence 46899999999998888886543 124666666777777778888988888877765 6999
Q ss_pred HHHHHHHHH
Q psy1678 278 DALEAAIEE 286 (297)
Q Consensus 278 ~~L~~~i~~ 286 (297)
+.|++.+..
T Consensus 185 E~l~~il~~ 193 (472)
T KOG0634|consen 185 ESLEEILSN 193 (472)
T ss_pred HHHHHHHhc
Confidence 999998875
No 304
>PRK07036 hypothetical protein; Provisional
Probab=78.11 E-value=7.1 Score=38.12 Aligned_cols=43 Identities=12% Similarity=-0.127 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++..+- ..-.||++|||||-.|++.||.+.
T Consensus 94 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~ 136 (466)
T PRK07036 94 NAPAAELAAKLAELAPGDL---------NHVFLTTGGSTAVDSALRFVHYYF 136 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHH
Confidence 4455566777777763211 247899999999999999999763
No 305
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=78.05 E-value=11 Score=36.51 Aligned_cols=68 Identities=15% Similarity=-0.010 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678 143 SYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM 222 (297)
Q Consensus 143 ~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~ 222 (297)
.....+..-+..+-..+.......|+. +..+.|+++..-.. -..-.||++||+||=+|++.||++..
T Consensus 64 ~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~-----~LA~~L~~~aP~~~--------l~~vFf~~sGSeAvEtAlKma~qY~~ 130 (449)
T COG0161 64 EIAEAIKKQLDKLPHVMFGGFTHEPAI-----ELAEKLAELAPEGG--------LDHVFFTDSGSEAVETALKMALQYWR 130 (449)
T ss_pred HHHHHHHHHHHhCCchhhcccCCchHH-----HHHHHHHHhCCCCC--------ccEEEEeCCchHHHHHHHHHHHHHHH
Confidence 334444444444433344444555632 23455667665110 02478999999999999999999865
Q ss_pred H
Q psy1678 223 Q 223 (297)
Q Consensus 223 ~ 223 (297)
.
T Consensus 131 ~ 131 (449)
T COG0161 131 A 131 (449)
T ss_pred h
Confidence 4
No 306
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=77.84 E-value=6.1 Score=38.90 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=63.7
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH-----HHHHHHh------hCCCCC
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK-----TMQRVKE------AHPDWK 233 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~-----~~~~~~~------~~~~~~ 233 (297)
.+-..-+||..+++...++||.... -+=.-+||.||+.++++--.- .+.+.+. ...+|.
T Consensus 89 g~~~~d~ie~l~~~ra~~lf~a~~a----------nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~ 158 (493)
T PRK13580 89 GCQNVDTVEWEAAEHAKELFGAEHA----------YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWE 158 (493)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCcc----------cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhh
Confidence 3455678999999999999997642 333456899999888775431 0000000 000010
Q ss_pred C--cCC-CCceEEE-ecCCCcchHHHHHHhcC--CceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678 234 D--SDI-IANLVGY-CSDQAHSSVERAGLLGG--VTIRGLPAD-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 234 ~--~~~-~~~~~i~-~s~~aH~Si~Kaa~~lg--~~v~~Vp~d-~~~~md~~~L~~~i~~ 286 (297)
. ... ..++..+ .+.-.|.+.-....+.| +.++.-++| ++|.+|+++|++.+.+
T Consensus 159 ~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~ 218 (493)
T PRK13580 159 ALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE 218 (493)
T ss_pred hhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhh
Confidence 0 000 0111111 22334544433444555 367777787 4799999999998875
No 307
>PRK09028 cystathionine beta-lyase; Provisional
Probab=77.38 E-value=18 Score=34.52 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=25.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
.|....+|+.+ +++.|.. ..++|+||++|+..++.+.
T Consensus 60 npt~~~Le~~i----A~le~~~-----------~~~~~~sG~~Ai~~~l~al 96 (394)
T PRK09028 60 TPTHFAFQAAI----VELEGGA-----------GTALYPSGAAAISNALLSF 96 (394)
T ss_pred CchHHHHHHHH----HHHhCCC-----------cEEEECCHHHHHHHHHHHH
Confidence 56666777644 4454542 3789999999998888653
No 308
>PLN02509 cystathionine beta-lyase
Probab=77.01 E-value=21 Score=34.98 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
..+-++++++.|.+ ..+++++|+.+ +.++... +. .| . .|+++...|.+.
T Consensus 136 ~aLE~~lA~leg~e-----------~ai~~~SG~aA-i~~il~l----l~----~G----------D-~VI~~~~~y~~t 184 (464)
T PLN02509 136 DALESLLAKLDKAD-----------RAFCFTSGMAA-LSAVTHL----IK----NG----------E-EIVAGDDVYGGS 184 (464)
T ss_pred HHHHHHHHHHhCCC-----------EEEEeCcHHHH-HHHHHHH----hC----CC----------C-EEEEcCCchhhH
Confidence 34556888888754 35677778755 3433321 11 01 1 466788888776
Q ss_pred HHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678 254 ERA----GLLGGVTIRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 254 ~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
.+. +...|+.++.++. .|+++|+++|.
T Consensus 185 ~~ll~~~l~~~G~~v~~vd~-----~d~e~l~~ai~ 215 (464)
T PLN02509 185 DRLLSQVVPRSGVVVKRVNT-----TNLDEVAAAIG 215 (464)
T ss_pred HHHHHHHHHHCCeEEEEeCC-----CCHHHHHHhCC
Confidence 643 3445776666643 25666666664
No 309
>PRK06105 aminotransferase; Provisional
Probab=76.73 E-value=8.1 Score=37.66 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++..+- ..-.|+++|||||-.||+.||.+
T Consensus 91 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseAve~AlKlar~~ 132 (460)
T PRK06105 91 HGPVIDLAEKLVAMAPVPM---------SKVFFTNSGSEANDTVVKLVWYY 132 (460)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHH
Confidence 4455556677778774321 13788999999999999999875
No 310
>PLN02397 aspartate transaminase
Probab=75.89 E-value=76 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=37.6
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeC-C-CCCCcCHHHHHHHHHH
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 286 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~-d-~~~~md~~~L~~~i~~ 286 (297)
.|++.+-+.+.....+...|.+++.||. + +++.+|++.|++.+.+
T Consensus 144 ~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~ 190 (423)
T PLN02397 144 TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKA 190 (423)
T ss_pred EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHh
Confidence 4667778888888999999999999998 3 3579999999888764
No 311
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=75.80 E-value=9.6 Score=36.52 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
....+..+.|+++.+..+ .-.|+++|||||-.|++.||.+.
T Consensus 82 ~~~~~la~~L~~~~~~~~----------~v~f~~sGseA~e~AlklAr~~~ 122 (408)
T PRK04612 82 APPLKLAEELVTASRFAE----------KVFLCNSGTEANEAAIKLVRKWA 122 (408)
T ss_pred HHHHHHHHHHHhhCCCCC----------EEEEcCchHHHHHHHHHHHHHHH
Confidence 334456677777764322 47899999999999999999864
No 312
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=75.65 E-value=10 Score=36.70 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++.-+.. ..-.|+++|||||-.|++.||.+
T Consensus 96 ~~~~~~la~~L~~~~p~~~~--------~~v~f~~sGseA~e~AlklAr~~ 138 (451)
T PRK06918 96 YEPYIELAEKLAALAPGSFD--------KKVLFLNSGAEAVENAVKIARKY 138 (451)
T ss_pred cHHHHHHHHHHHHhCCCCCC--------CEEEEcCCcHHHHHHHHHHHHHH
Confidence 34455677778888742210 13789999999999999999976
No 313
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=75.64 E-value=24 Score=34.94 Aligned_cols=74 Identities=18% Similarity=-0.004 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
+..+.++.+.|++++...+- ..-.|+++|||||..|+++||.+... . |. ..++-+|.....-
T Consensus 132 ~~~~~~lae~L~~~~~~~~~--------~~v~f~~SGsEA~e~AlKlAr~~~~~-~---g~------~~r~~iI~~~~~y 193 (504)
T PLN02760 132 TKPSLDLAKELLEMFTARKM--------GKVFFTNSGSEANDTQVKLVWYYNNA-L---GR------PNKKKFIARSKSY 193 (504)
T ss_pred cHHHHHHHHHHHhhcCCCCC--------CEEEEeCChHHHHHHHHHHHHHHHHh-c---CC------CCCcEEEEECCCc
Confidence 34444455566666532211 13678999999999999999976321 1 10 0123355566677
Q ss_pred cchHHHHHHhcC
Q psy1678 250 HSSVERAGLLGG 261 (297)
Q Consensus 250 H~Si~Kaa~~lg 261 (297)
|-+..-+..+-|
T Consensus 194 HG~t~~a~slsg 205 (504)
T PLN02760 194 HGSTLISASLSG 205 (504)
T ss_pred cCChHhhhhccC
Confidence 777655555444
No 314
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=75.53 E-value=12 Score=35.43 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=44.8
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i 243 (297)
...|-...+|+ .++++.|.+. .++++.|+.++.. +... +. +.-.|
T Consensus 47 ~~~p~~~~Le~----~la~l~g~~~-----------al~~~SG~~Al~~-~l~~----l~---------------pGd~V 91 (380)
T PRK06176 47 SGNPTRFALEE----LIADLEGGVK-----------GFAFASGLAGIHA-VFSL----FQ---------------SGDHV 91 (380)
T ss_pred CCChhHHHHHH----HHHHHhCCCC-----------EEEECCHHHHHHH-HHHH----cC---------------CCCEE
Confidence 34566666776 5677778643 5666777766643 2221 11 11135
Q ss_pred EecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 244 YCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 244 ~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++...+.+.. +.+...|+.++.++.+ |+++|+++|++
T Consensus 92 i~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-----d~e~l~~ai~~ 133 (380)
T PRK06176 92 LLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-----DLSQIKKAIKP 133 (380)
T ss_pred EEcCCChhHHHHHHHHHHHhcCeEEEEcCCC-----CHHHHHHhcCc
Confidence 55665554332 3344566666665542 66666666643
No 315
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=75.52 E-value=9.9 Score=37.29 Aligned_cols=42 Identities=19% Similarity=0.032 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.+..|.++.+.|++++..-+ .-.|+++|||||..|++.||.+
T Consensus 137 ~~~~~~~lAe~l~~~~p~~~----------~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 137 PCLLENVLAEMVIDAVPSVE----------MVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred CCHHHHHHHHHHHHhCCCCC----------EEEEeCChHHHHHHHHHHHHHh
Confidence 35677778888888874322 4789999999999999999986
No 316
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=75.49 E-value=19 Score=35.03 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
....++.+.|+++++.+- ..-.|+++|||||-.|++.||.+.
T Consensus 97 ~~~~~lAe~L~~~~p~~~---------~~v~f~~sGseAve~AlKlA~~~~ 138 (453)
T PRK06943 97 EPAIELAERLAALTGGTL---------GHAFFASDGASAVEIALKMSFHAW 138 (453)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCCCHHHHHHHHHHHHHHH
Confidence 344456677777765321 147899999999999999999864
No 317
>PRK07482 hypothetical protein; Provisional
Probab=75.47 E-value=9.2 Score=37.30 Aligned_cols=43 Identities=9% Similarity=-0.125 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++..+- ..-.|+++|||||-.|++.||.+.
T Consensus 93 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~sGSEAve~AlKlAr~~~ 135 (461)
T PRK07482 93 TEASITLSKRIIDRAPAGM---------SKVYYGLSGSDANETQIKLVWYYN 135 (461)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCchHHHHHHHHHHHHHHH
Confidence 4555567777778773211 136799999999999999999764
No 318
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=75.39 E-value=11 Score=36.79 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....+.+.+.+.+++++.-+- ..-.||++|||||-.|++.||.+.
T Consensus 101 ~~~~~la~~l~~~l~~~~p~~~---------~~v~f~~SGsEAvE~AlKlAr~~~ 146 (464)
T TIGR00699 101 FPSKDWAKILKEGILKVAPKGQ---------DQVWTGMSGSDANELAFKAAFMYY 146 (464)
T ss_pred HHHHHHHHHHHHhHHhhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3344455555555566653111 137899999999999999999864
No 319
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=75.03 E-value=16 Score=33.92 Aligned_cols=89 Identities=12% Similarity=-0.023 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678 174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253 (297)
Q Consensus 174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si 253 (297)
..+.+++++.+|.++. ..-++|+|+++++.. +.. .+. ..+ +++.+-+.+..
T Consensus 56 ~~L~~~ia~~~~~~~~--------~~I~i~~Gs~e~i~~-l~~----~~~--------------~g~--v~v~~P~y~~y 106 (339)
T PRK06959 56 DGLAACAARYYGAPDA--------AHVLPVAGSQAAIRA-LPA----LLP--------------RGR--VGIAPLAYSEY 106 (339)
T ss_pred HHHHHHHHHHhCCCCc--------ccEEECcCHHHHHHH-HHH----hcC--------------CCe--EEEcCCCcHHH
Confidence 4677899999999742 158889999988742 211 111 112 33444555666
Q ss_pred HHHHHhcCCceEEeeCC------------------CCC-CcCHHHHHHHHHHHHHCC
Q psy1678 254 ERAGLLGGVTIRGLPAD------------------DSY-KLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 254 ~Kaa~~lg~~v~~Vp~d------------------~~~-~md~~~L~~~i~~~~~~G 291 (297)
..+++..|.+++.||.| +.| .++.+.|++.++.+..++
T Consensus 107 ~~~~~~~g~~~~~v~~~~~~~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~ 163 (339)
T PRK06959 107 APAFARHGHRVVPLDEAADTLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARG 163 (339)
T ss_pred HHHHHHCCCEEEeecccchhccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77888888877766654 233 356777777666655544
No 320
>PRK06149 hypothetical protein; Provisional
Probab=74.67 E-value=25 Score=37.81 Aligned_cols=40 Identities=18% Similarity=-0.010 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
...+..+.|++++..+. ..-.|+++|||||-.|++.||..
T Consensus 625 ~~~elae~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~ 664 (972)
T PRK06149 625 AVAEFSERLAALAPDGL---------DTVFLVNSGSEANDLAIRLAWAA 664 (972)
T ss_pred HHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHh
Confidence 34445566777772111 14789999999999999999976
No 321
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=74.37 E-value=12 Score=36.25 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|+++++-+.- ..-.|+++|||||-.|++.||..
T Consensus 96 ~~~~~~lAe~L~~~~p~~~~--------~~v~f~~SGsEA~e~AlklAr~~ 138 (441)
T PRK05769 96 YEPAVELAERLVEIAPGGFE--------KKVFFTNSGTESNEAAIKIARYH 138 (441)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------CEEEECCchHHHHHHHHHHHHHH
Confidence 34555677788888742110 14788999999999999999976
No 322
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=74.32 E-value=11 Score=36.76 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+..+.++.+.|++++...- ..-.|+++|||||-.|++.||.+.
T Consensus 98 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 98 NVPSILLAEKLIEVVPEGL---------KKVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 4455566777778764221 147899999999999999999863
No 323
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=74.25 E-value=12 Score=35.69 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 142 NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 142 ~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
|.....+.+-+..++..+...+ +|. -.+..+.|+++.+ .+ --.|+++|||||=.|++.||.+
T Consensus 61 P~iv~al~~Q~~kl~h~sn~~~--~~~----~~~la~~L~~~s~~~d-----------~vff~NSGaEA~EaAiKlARk~ 123 (404)
T COG4992 61 PALVEALKEQAEKLWHVSNLFY--NEP----QAELAEKLVELSPFAD-----------RVFFCNSGAEANEAALKLARKY 123 (404)
T ss_pred HHHHHHHHHHHHHhhhcccccC--ChH----HHHHHHHHHhhCcccc-----------EEEEcCCcHHHHHHHHHHHHHH
Confidence 3444455555555554433221 122 2235567778886 32 3789999999999999999998
Q ss_pred HH-HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 221 TM-QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 221 ~~-~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
.. ++..+ -..+ +.+.-.|----.|.+.+.-..|.-.=+==.++.||-+ |+++|+++|++++
T Consensus 124 ~~~~~k~~-Iia~-~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~t 185 (404)
T COG4992 124 TGDPEKSK-IIAF-ENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDT 185 (404)
T ss_pred cCCCCCcE-EEEE-cCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCe
Confidence 64 10000 0000 0000112112234444444444322000156666665 5788888887754
No 324
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=74.04 E-value=20 Score=33.31 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=47.0
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC--c------chHHHHHHhcCCceEEeeCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA--H------SSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a--H------~Si~Kaa~~lg~~v~~Vp~d 270 (297)
..++|+|||.+|.-.-+++--+.+ | -+.+|++++.. + ..-.+..+.+|.+|+.++.+
T Consensus 67 ~~vvs~ggs~gN~g~alA~~a~~~------G---------l~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 131 (337)
T TIGR01274 67 TTLVSIGGIQSNQTRQVAAVAAHL------G---------MKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG 131 (337)
T ss_pred CEEEECCCCcchHHHHHHHHHHHc------C---------CcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc
Confidence 367888999889766665533321 1 24567777643 2 24445667899999988865
Q ss_pred CCCCcCHHHHHHHHHHHHHCC
Q psy1678 271 DSYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 271 ~~~~md~~~L~~~i~~~~~~G 291 (297)
.+.. ..+.++++.+...+.+
T Consensus 132 ~~~~-~~~~~~~a~~~~~~~~ 151 (337)
T TIGR01274 132 FDIG-HRNSWERALEEVRGAG 151 (337)
T ss_pred cccc-chHHHHHHHHHHHhcC
Confidence 4322 2455555565555553
No 325
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=73.87 E-value=11 Score=36.96 Aligned_cols=43 Identities=19% Similarity=-0.034 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....++.+.|++++..+. ..-.|+++|||||-.|++.||.+.
T Consensus 89 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlKlAr~~~ 131 (466)
T PRK07030 89 HEPVIELSERLVKITPPGL---------SRCFYADNGSSAIEVALKMSFHYW 131 (466)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 4555567778888773211 147899999999999999999874
No 326
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=73.28 E-value=42 Score=31.78 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhccccc-----cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHH
Q psy1678 145 PAIVADILSDSIACIG-----FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLG 216 (297)
Q Consensus 145 ~svl~d~l~~~lN~n~-----~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~ 216 (297)
...+.+.+...++.+. ..|....+...+-+.+.+|+.+..|.+-+. ..-++|+|++++...++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~-------~~I~it~Ga~~al~~~~~~ 116 (416)
T PRK09440 47 EDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISP-------QNIALTNGSQSAFFYLFNL 116 (416)
T ss_pred HHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCh-------hhEEEccChHHHHHHHHHH
Confidence 3455555655554321 223333334567777888888877754210 2588999999988776654
No 327
>PLN00144 acetylornithine transaminase
Probab=72.68 E-value=12 Score=35.51 Aligned_cols=40 Identities=15% Similarity=-0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+.+..+.|+++.+.+ .-.|+++|||||-.|++.||.+.
T Consensus 57 ~~~~~la~~l~~~~~~~-----------~v~f~~sGseA~e~AlklAr~~~ 96 (382)
T PLN00144 57 IPQVELAKRLVASSFAD-----------RVFFCNSGTEANEAAIKFARKYQ 96 (382)
T ss_pred HHHHHHHHHHHhcCCCC-----------eEEEeCCcHHHHHHHHHHHHHHH
Confidence 33445556666665432 37899999999999999999864
No 328
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=72.64 E-value=14 Score=35.92 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+.++.+.|++++.-.- ..-.|+++|||||-.|++.||.+.
T Consensus 89 ~~~~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 89 PKAFELANRIAEIAPGGL---------NHVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 344466777778763111 136899999999999999999873
No 329
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=72.54 E-value=13 Score=35.73 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++..+.. ..-.|+++|||||-.|++.||..
T Consensus 82 ~~~~~~la~~l~~~~p~~~~--------~~~~f~~sGseA~e~AlklAr~~ 124 (421)
T PRK09792 82 YESYVTLAEKINALAPVSGQ--------AKTAFFTTGAEAVENAVKIARAH 124 (421)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------ceEEEeCChHHHHHHHHHHHHHh
Confidence 34445566777777643211 13688999999999999999975
No 330
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=71.87 E-value=17 Score=35.49 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
.+.++.+.|+++++.+.+ .-.|+++|||||-.|++.||.+
T Consensus 97 ~~~~lae~L~~~~p~~~~---------~v~f~~SGsEA~e~AlklAr~~ 136 (457)
T PRK05639 97 RAIRVAEKLAEISPIENP---------KVLFGLSGSDAVDMAIKVSKFS 136 (457)
T ss_pred HHHHHHHHHHhhCCCCcC---------EEEEeCchHHHHHHHHHHHHHh
Confidence 344566777777653311 4789999999999999999975
No 331
>PRK06434 cystathionine gamma-lyase; Validated
Probab=71.84 E-value=13 Score=35.30 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=49.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
+....|...++|+. ++++.|.. ..+.+++|+.|+..++.+. +. ...
T Consensus 59 ~r~~~P~~~~lE~~----la~leg~~-----------~av~~sSG~aAi~~al~al----l~--------------~GD- 104 (384)
T PRK06434 59 TRWGNPTVQAFEEK----YAVLENAE-----------HALSFSSGMGAITSAILSL----IK--------------KGK- 104 (384)
T ss_pred eCCCChhHHHHHHH----HHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC--------------CCC-
Confidence 33467888889985 67777775 3688899999888888653 11 012
Q ss_pred EEEecCCC---cc-hHHHHHHhcCCceEEeeCCC
Q psy1678 242 VGYCSDQA---HS-SVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 242 ~i~~s~~a---H~-Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
.|+++... .+ .+...+..+|+.++.+++++
T Consensus 105 ~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~ 138 (384)
T PRK06434 105 RILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDR 138 (384)
T ss_pred EEEEecCccchHHHHHHHHHHhcCcEEEEECCCC
Confidence 34555441 22 23356667888888888764
No 332
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=70.73 E-value=8.6 Score=37.20 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|+++++.... .-.|+++|||||..|++.||.+
T Consensus 92 ~~~~~~la~~L~~~~~~~~~---------~v~f~~SGsEA~e~AiklAr~~ 133 (433)
T PRK00615 92 SEQEILFAEELFSYLGLEDH---------KIRFVSSGTEATMTAVRLARGI 133 (433)
T ss_pred CHHHHHHHHHHHHhCCCCcC---------EEEEeCchHHHHHHHHHHHHHh
Confidence 44556677888888754321 4789999999999999999986
No 333
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=70.46 E-value=16 Score=35.44 Aligned_cols=43 Identities=19% Similarity=-0.072 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++.-... ..-.|+++|||||-.|++.||..
T Consensus 84 ~~~~~~lae~L~~~~p~~~~--------~~v~f~~SGseA~e~AiklAr~~ 126 (445)
T PRK08593 84 HEPLVRLAKKLCELAPGDFE--------KRVTFGLSGSDANDGIIKFARAY 126 (445)
T ss_pred CHHHHHHHHHHHHhCCCCCC--------CEEEECCchHHHHHHHHHHHHHh
Confidence 34444566677777632210 13689999999999999999976
No 334
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=70.35 E-value=14 Score=35.97 Aligned_cols=42 Identities=14% Similarity=-0.006 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|+++++.+. ..-.|+++|||||-.|++.||.+
T Consensus 112 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~ 153 (459)
T PRK06082 112 NETAIECAEKLTEIAGGEL---------NRVLFAPGGTSAIGMALKLARHI 153 (459)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEECCCcHHHHHHHHHHHHHh
Confidence 4555667777888875321 14789999999999999999975
No 335
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=69.83 E-value=16 Score=35.24 Aligned_cols=42 Identities=19% Similarity=0.016 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+....++.+.|+++++.+- ..-.|+++|||||-.|++.||.+
T Consensus 85 ~~~~~~la~~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~ 126 (428)
T PRK07986 85 HPPAIELCRKLVAMTPQPL---------ECVFLADSGSVAVEVAMKMALQY 126 (428)
T ss_pred CHHHHHHHHHHHhhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHH
Confidence 3444556777888764321 14788999999999999999986
No 336
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.68 E-value=16 Score=35.10 Aligned_cols=42 Identities=17% Similarity=-0.009 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
....++.+.|+++++.+- ..-.|+++|||||-.|++.||.+.
T Consensus 83 ~~~~~lae~L~~~~p~~~---------~~v~f~~SGseA~e~AlklAr~~~ 124 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGL---------DHVFYSDSGSVSVEVAIKMALQYS 124 (422)
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 334456667777764221 147899999999999999999874
No 337
>PRK06062 hypothetical protein; Provisional
Probab=69.65 E-value=16 Score=35.51 Aligned_cols=42 Identities=7% Similarity=-0.060 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+....++.+.|+++...+- ..-.|+++|||||-.|++.||.+
T Consensus 94 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~ 135 (451)
T PRK06062 94 NDARSEAARLIAERAPGDL---------SKVFFTNGGADANEHAVRMARLH 135 (451)
T ss_pred CHHHHHHHHHHHHhCCCCC---------CEEEEcCChHHHHHHHHHHHHHh
Confidence 3444556666777763221 14789999999999999999986
No 338
>PRK07483 hypothetical protein; Provisional
Probab=69.52 E-value=17 Score=35.27 Aligned_cols=42 Identities=21% Similarity=-0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
....++.+.|++++...- ..-.|+++|||||-.|++.||.+.
T Consensus 73 ~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~~ 114 (443)
T PRK07483 73 EPAEALADRLVAAAPAGL---------EHVYFVSGGSEAVEAALKLARQYF 114 (443)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEcCCcHHHHHHHHHHHHHHH
Confidence 334456677777763211 136899999999999999999874
No 339
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=69.08 E-value=16 Score=35.39 Aligned_cols=42 Identities=19% Similarity=0.041 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+.++.+.|++++..+- ..-.|+++|||||-.|++.||.+.
T Consensus 92 ~~~~~la~~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~ 133 (445)
T PRK09221 92 PLAFELAERLAELAPGGL---------DHVFFTNSGSESVDTALKIALAYH 133 (445)
T ss_pred HHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 344456677777763221 136899999999999999999874
No 340
>PRK05967 cystathionine beta-lyase; Provisional
Probab=68.96 E-value=23 Score=33.83 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=42.1
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++.+-|.+ ..+++++|+.|+..++.+- +. +.-.|+
T Consensus 62 gnPt~~~Le~----~la~le~~~-----------~~v~~sSG~aAi~~~l~al----l~---------------~GD~Vl 107 (395)
T PRK05967 62 GTPTTDALCK----AIDALEGSA-----------GTILVPSGLAAVTVPFLGF----LS---------------PGDHAL 107 (395)
T ss_pred CChHHHHHHH----HHHHHhCCC-----------CEEEECcHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 3455555665 455555543 3677877998888777553 11 112466
Q ss_pred ecCCCcchHHH----HHHhcCCceEEeeC
Q psy1678 245 CSDQAHSSVER----AGLLGGVTIRGLPA 269 (297)
Q Consensus 245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~ 269 (297)
++...+.+... .+..+|++++.++.
T Consensus 108 v~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 108 IVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred EccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 77777777654 34556776666543
No 341
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=68.44 E-value=23 Score=33.54 Aligned_cols=72 Identities=14% Similarity=0.078 Sum_probs=48.2
Q ss_pred cccCCCCC-CHHHHHHHHHHHhccccc---cc---cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 135 HAYFPTAN-SYPAIVADILSDSIACIG---FT---WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 135 ~g~~~s~~-~~~svl~d~l~~~lN~n~---~~---~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
+.|.++|. .+..|+..+...++|.++ .. .-.+|-..++=.++...|.+|++.|++. .--++++|||
T Consensus 6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y-------~Vlfl~GggT 78 (364)
T PRK12462 6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY-------GVVFLQGGSS 78 (364)
T ss_pred ceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC-------eEEEEeccHH
Confidence 34555553 567888888888988655 11 2335677778888999999999998753 1244455677
Q ss_pred HHHHHH
Q psy1678 208 EATLVA 213 (297)
Q Consensus 208 ~anl~A 213 (297)
.+.-.+
T Consensus 79 ~~~ea~ 84 (364)
T PRK12462 79 LQFSMI 84 (364)
T ss_pred HHHHHH
Confidence 654333
No 342
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=68.23 E-value=11 Score=36.44 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
...|.++.+.|++++...+ .-.|+++|||||-.|++.||.+
T Consensus 87 ~~~~~~la~~l~~~~p~~~----------~v~f~~sGseA~e~AlklAr~~ 127 (431)
T PRK06209 87 SAIELDAAESFLELIDGAD----------MVKFCKNGSDATSAAVRLARAY 127 (431)
T ss_pred CHHHHHHHHHHHHhCCccc----------eEEEecCHHHHHHHHHHHHHHH
Confidence 3455566777888773211 3789999999999999999986
No 343
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=67.46 E-value=15 Score=35.24 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+.++.+.|++++..+.. ..-.|+++|||||-.|++.||.+
T Consensus 85 ~~~la~~l~~~~p~~~~--------~~~~f~~sGseA~e~AlklAr~~ 124 (421)
T PRK06777 85 YVTLAERINALAPIDGP--------AKTAFFTTGAEAVENAVKIARAY 124 (421)
T ss_pred HHHHHHHHHHhCCCCCC--------ceEEEeCCcHHHHHHHHHHHHHh
Confidence 33455667777643210 14688999999999999999976
No 344
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=67.08 E-value=19 Score=34.89 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
....++.+.|++++..... ..-.|+++|||||-.|++.||..
T Consensus 99 ~~~~~la~~l~~~~p~~~~--------~~v~f~~sGseA~e~AlklAr~~ 140 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDHE--------KRSALFNSGAEAVENAVKIARSY 140 (443)
T ss_pred HHHHHHHHHHHHhCCCCCC--------CEEEEeCCcHHHHHHHHHHHHHh
Confidence 4445677788888753210 13678899999999999999976
No 345
>KOG1404|consensus
Probab=66.76 E-value=4.7 Score=38.27 Aligned_cols=23 Identities=30% Similarity=0.121 Sum_probs=21.0
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.-.||++|||||=+||+.||.+.
T Consensus 111 ~vfF~nsGsEANelal~mar~Yt 133 (442)
T KOG1404|consen 111 VVFFVNSGSEANELALKMARLYT 133 (442)
T ss_pred EEEEecCCchHHHHHHHHHHHhc
Confidence 48899999999999999999873
No 346
>PRK08297 L-lysine aminotransferase; Provisional
Probab=66.16 E-value=24 Score=34.23 Aligned_cols=23 Identities=17% Similarity=-0.208 Sum_probs=20.7
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.-.|+++|||||-.|++.||.+.
T Consensus 112 ~v~f~~SGsEAve~AlKlAr~~~ 134 (443)
T PRK08297 112 HLFFVDGGALAVENALKVAFDWK 134 (443)
T ss_pred EEEEeCchHHHHHHHHHHHHHHh
Confidence 47899999999999999999863
No 347
>PRK12566 glycine dehydrogenase; Provisional
Probab=65.85 E-value=97 Score=33.22 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=61.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCC--CCCCccccccCCCCCCHHHHH-------HHHHHHhccccccccccCchh--h
Q psy1678 102 ETAPDTPDTWQEVMSDIERVIMPGVT--HWHSPKFHAYFPTANSYPAIV-------ADILSDSIACIGFTWIASPAC--T 170 (297)
Q Consensus 102 ~~lP~~g~~~~~il~~l~~~~~~~~~--~~~~p~~~g~~~s~~~~~svl-------~d~l~~~lN~n~~~~~~~p~~--~ 170 (297)
..+|+ +.+..++++++++...++-. .+-...|++|.. ++++ .+|+++.. ..-.+.|.+. .
T Consensus 55 l~lp~-~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~-----P~vi~~~i~~~~~~yTaYT---PYQpEisQG~Lqa 125 (954)
T PRK12566 55 LDLPA-ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVT-----PTVILRNVLENPGWYTAYT---PYQPEIAQGRLEA 125 (954)
T ss_pred CCCCC-CCCHHHHHHHHHHHHhcCCCccccccccccCCcC-----cHHHHHHHHhCchhhhcCC---CCCchhhhHHHHH
Confidence 34554 67899999999998665533 111222333322 3333 23444331 1122334443 3
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.+|-+ .|+++|.|++-. ..-+.-|||- .-.|+..|+... + .++-.+++|+..|
T Consensus 126 l~e~Q--tmi~~LtGm~va---------NASl~D~atA-~aEA~~ma~~~~--~-------------~k~~~~~v~~~~h 178 (954)
T PRK12566 126 LLNFQ--QMTIDLTGLDLA---------NASLLDEATA-AAEAMALAKRVA--K-------------SKSNRFFVDEHCH 178 (954)
T ss_pred HHHHH--HHHHHHhCchhh---------hhhhccchhH-HHHHHHHHHHHh--h-------------cCCCEEEECCCCC
Confidence 45555 489999999853 2334445552 223455444321 1 0123578899999
Q ss_pred chHHH
Q psy1678 251 SSVER 255 (297)
Q Consensus 251 ~Si~K 255 (297)
+....
T Consensus 179 P~~~~ 183 (954)
T PRK12566 179 PQTLS 183 (954)
T ss_pred HHHHH
Confidence 77554
No 348
>PRK06541 hypothetical protein; Provisional
Probab=65.77 E-value=21 Score=34.87 Aligned_cols=42 Identities=17% Similarity=-0.036 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
....++.+.|++++.-+- ..-.|+++|||||-.|++.||.+.
T Consensus 95 ~~~~~la~~l~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~ 136 (460)
T PRK06541 95 PPAIELAERLAALAPGDL---------NRVFFTTGGSEAVESAWKLAKQYF 136 (460)
T ss_pred HHHHHHHHHHHHhCCCCc---------CEEEEcCCcHHHHHHHHHHHHHHH
Confidence 344445666777653211 146899999999999999999863
No 349
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=65.16 E-value=35 Score=31.73 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKA 219 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~ 219 (297)
+....+..+.|+++++-.- ..-.|+++|||||-.||+.||.
T Consensus 58 ~~~~~~la~~L~~~~p~~~---------~~v~f~~sGseAve~Alkla~~ 98 (339)
T PF00202_consen 58 HPEAAELAEKLAELFPGGL---------DRVFFANSGSEAVEAALKLARQ 98 (339)
T ss_dssp EHHHHHHHHHHHHHSSTTE---------EEEEEESSHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhcccccc---------ceeeeccCchHHHHHHHHHhhc
Confidence 3444567788889983322 2488999999999999999993
No 350
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=64.23 E-value=25 Score=33.96 Aligned_cols=42 Identities=21% Similarity=0.027 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..+.++.+.|++++..+- ..-.|+++|||||-.|++.||.+.
T Consensus 87 ~~~~~lae~L~~~~p~~~---------~~v~f~~sGseAve~AlklAr~~~ 128 (429)
T PRK06173 87 EPAVELAQKLLEILPPSL---------NKIFFADSGSVAVEVAMKMALQYQ 128 (429)
T ss_pred HHHHHHHHHHHhhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHH
Confidence 344556667777763211 147899999999999999999864
No 351
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=63.03 E-value=27 Score=33.61 Aligned_cols=42 Identities=21% Similarity=0.078 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
..+.++.+.|+++++.+.. ..-.|+++|||||-.|++.||..
T Consensus 83 ~~~~~la~~l~~~~p~~~~--------~~v~f~~SGseA~e~AlklAr~~ 124 (425)
T PRK07495 83 ENYVRLAERLNALVPGDFA--------KKTIFVTTGAEAVENAVKIARAA 124 (425)
T ss_pred HHHHHHHHHHHHhCCCCCC--------CEEEECCchHHHHHHHHHHHHHh
Confidence 3444566777777742210 13789999999999999999976
No 352
>KOG1357|consensus
Probab=63.00 E-value=31 Score=33.52 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCccccccCCCC-CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678 128 HWHSPKFHAYFPTA-NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA 206 (297)
Q Consensus 128 ~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG 206 (297)
+..+-.|+|+-.+. +..+.++..+-.-.++.+....+. ..+.+-+++-.-+|+.+|-++ +-+|..|
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~--G~~~~hkelE~l~A~f~g~e~----------a~vF~mG- 206 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEA--GTTEEHKELEELVARFLGVED----------AIVFSMG- 206 (519)
T ss_pred eecccccccccccCCcCChHHHHHHHHhcccccccchhc--ccHHHHHHHHHHHHHhcCCcc----------eEEEecc-
Confidence 44556687776554 333343333333333333322333 245566677778899999986 3666655
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
- +.+...++.+ ..+...|+.-+..|-|+.-.|++-|..+|.-.-| |.+.||+.|++
T Consensus 207 f--------~TNs~~~p~l-----------~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd 262 (519)
T KOG1357|consen 207 F--------ATNSMNIPSL-----------LGKGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLLRD 262 (519)
T ss_pred c--------cccccCccee-----------ecCCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHHHHH
Confidence 1 1111111110 0123345566899999999999999988877666 57899999999
Q ss_pred HHHCC
Q psy1678 287 DLKKG 291 (297)
Q Consensus 287 ~~~~G 291 (297)
.+..|
T Consensus 263 ~I~~g 267 (519)
T KOG1357|consen 263 AIVYG 267 (519)
T ss_pred HHhcC
Confidence 88877
No 353
>PRK06148 hypothetical protein; Provisional
Probab=62.25 E-value=24 Score=38.15 Aligned_cols=42 Identities=24% Similarity=0.110 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.+..+.|++++..+- .--.|+++|||||-.||+.||..
T Consensus 662 ~~~~~~lAe~L~~~~p~~~---------~~v~f~nSGsEA~e~AlklAr~~ 703 (1013)
T PRK06148 662 HDAIVAYAERLTATLPDGL---------TVAFFVNSGSEANSLALRLARAH 703 (1013)
T ss_pred CHHHHHHHHHHHHhCCCCc---------CEEEEeCCcHHHHHHHHHHHHHh
Confidence 3445556777777774221 13689999999999999999986
No 354
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=61.46 E-value=31 Score=33.84 Aligned_cols=48 Identities=17% Similarity=-0.069 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
+....++.+.|++++.....- .+-..-.|+++|||||-.|++.||.+.
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~----~~~~~v~f~~sGSEAvE~AlKlAr~~~ 153 (472)
T PRK08742 106 HEPAVQLAEQLLAIAPRQDGR----APLSKVFYADNGSAGVEVALKMAFHYF 153 (472)
T ss_pred CHHHHHHHHHHHHhCCCcccC----CCCCEEEEeCCchHHHHHHHHHHHHHH
Confidence 344456677777877421000 000147899999999999999999874
No 355
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=61.38 E-value=1.1e+02 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.133 Sum_probs=20.7
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
--.|+++|||||=.|++.||.+.
T Consensus 119 ~~~f~~sGaeA~E~AiKiAr~~T 141 (447)
T COG0160 119 KVFFGNSGAEAVEAAIKIARAYT 141 (447)
T ss_pred eEEecCCcHHHHHHHHHHHHHHh
Confidence 47889999999999999999874
No 356
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=61.08 E-value=72 Score=30.53 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
-..++.+.++++.+.+.. ..-+|+++||+||-.||+.||..
T Consensus 85 ~~~~la~~l~~~~~~~~~--------~~~~f~~sGsea~e~Alklar~~ 125 (425)
T PRK08088 85 PYLELCEKMNQKVPGDFA--------KKTLLVTTGSEAVENAVKIARAA 125 (425)
T ss_pred HHHHHHHHHHHhCCCCCC--------CEEEEeCCcHHHHHHHHHHHHHH
Confidence 344677888888764321 14678999999999999999875
No 357
>KOG1401|consensus
Probab=60.42 E-value=15 Score=35.15 Aligned_cols=25 Identities=24% Similarity=0.042 Sum_probs=21.7
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
--.|+..|||||..||+.||.....
T Consensus 118 rvff~nsGTeAne~ALK~Ark~~~~ 142 (433)
T KOG1401|consen 118 RVFFCNSGTEANETALKFARKFTGK 142 (433)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhcc
Confidence 4788999999999999999987543
No 358
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=60.39 E-value=30 Score=33.68 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCe-EEcCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGG-VIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G-~~tsGGT~anl~Al~~AR~~ 220 (297)
+..+.++.+.|++++...... ..- .|+++|||||-.|++.||.+
T Consensus 100 ~~~~~~lAe~L~~~~p~~~~~-------~~~~f~~~SGsEAve~AlklAr~~ 144 (459)
T PRK06931 100 TPLKDAFSEYLLSLLPGQGKE-------YCLQFTGPSGADAVEAAIKLAKTY 144 (459)
T ss_pred CHHHHHHHHHHHHhCCCcccc-------ceEEEeCCCcHHHHHHHHHHHHHh
Confidence 455666777888887432110 023 44589999999999999976
No 359
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=60.22 E-value=30 Score=33.33 Aligned_cols=40 Identities=23% Similarity=-0.001 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
..++.+.|+++++-+- ..-.|+.+|||||-.|++.||.+.
T Consensus 90 ~~~la~~l~~~~~~~~---------~~v~f~~sGseA~e~AlklAr~~~ 129 (427)
T TIGR00508 90 AIELCQKLVKMTPNAL---------DCVFLADSGSVAVEVALKMALQYW 129 (427)
T ss_pred HHHHHHHHHhhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence 3456777888874321 247899999999999999999874
No 360
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=60.07 E-value=30 Score=33.12 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678 173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK 220 (297)
Q Consensus 173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~ 220 (297)
+.++.+.|++++..+.. ..-.|+++|||||-.|++.||.+
T Consensus 78 ~~~la~~l~~~~p~~~~--------~~v~f~~sGseA~e~AlklAr~~ 117 (420)
T TIGR00700 78 YVALAEKLNRIAPGSGP--------KKSVFFNSGAEAVENAVKIARSY 117 (420)
T ss_pred HHHHHHHHHHhCCCCCC--------CEEEEeCCcHHHHHHHHHHHHHh
Confidence 33455667777632110 13689999999999999999976
No 361
>PLN02452 phosphoserine transaminase
Probab=59.92 E-value=41 Score=31.73 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=49.0
Q ss_pred cccccCCCCC-CHHHHHHHHHHHhcccccc------ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC
Q psy1678 133 KFHAYFPTAN-SYPAIVADILSDSIACIGF------TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT 205 (297)
Q Consensus 133 ~~~g~~~s~~-~~~svl~d~l~~~lN~n~~------~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG 205 (297)
|-+.+.++|. .+..|+..+...++|-++. ..-.+|-...+=.++.+.|.++++.|+++ ..-.++.|
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y-------~v~~l~Gs 79 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY-------EVLFLQGG 79 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEeCc
Confidence 4455666664 5678888888887765421 12236667778788999999999998653 13445577
Q ss_pred hhHHHHHHHH
Q psy1678 206 ASEATLVALL 215 (297)
Q Consensus 206 GT~anl~Al~ 215 (297)
||.+.=.++.
T Consensus 80 gt~~~ea~~~ 89 (365)
T PLN02452 80 ASTQFAAIPL 89 (365)
T ss_pred cHHHHHHHHH
Confidence 7765544333
No 362
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=59.41 E-value=59 Score=29.64 Aligned_cols=58 Identities=10% Similarity=-0.031 Sum_probs=37.6
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc--------hHHHHHHhcCCceEEeeCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS--------SVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~--------Si~Kaa~~lg~~v~~Vp~d 270 (297)
..++|.|||.+|.-.-+++--+.+ | -+.+|++++..-. .-.+..+.+|.+|+.++.+
T Consensus 53 ~~vv~~ggs~GN~g~alA~~a~~~------G---------~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~ 117 (307)
T cd06449 53 DTLVTVGGIQSNHTRQVAAVAAKL------G---------LKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAG 117 (307)
T ss_pred CEEEECCCchhHHHHHHHHHHHHc------C---------CeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCc
Confidence 367899999999876665533221 1 3567888865432 2345567789999888765
Q ss_pred C
Q psy1678 271 D 271 (297)
Q Consensus 271 ~ 271 (297)
.
T Consensus 118 ~ 118 (307)
T cd06449 118 F 118 (307)
T ss_pred c
Confidence 3
No 363
>PRK07582 cystathionine gamma-lyase; Validated
Probab=59.41 E-value=43 Score=31.40 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=41.1
Q ss_pred cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678 165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY 244 (297)
Q Consensus 165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (297)
..|....+|+ .++++. .+ ..+++++|+.++..++.+. +. +.-.|+
T Consensus 49 ~~p~~~~Le~----~lA~l~--~~----------~~v~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl 93 (366)
T PRK07582 49 SNPTWRALEA----ALGELE--GA----------EALVFPSGMAAITAVLRAL----LR---------------PGDTVV 93 (366)
T ss_pred CCccHHHHHH----HHHHHc--CC----------CEEEECCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence 3455666666 455555 22 4778888898877666442 11 112456
Q ss_pred ecCCCcchHHHHH----HhcCCceEEeeCC
Q psy1678 245 CSDQAHSSVERAG----LLGGVTIRGLPAD 270 (297)
Q Consensus 245 ~s~~aH~Si~Kaa----~~lg~~v~~Vp~d 270 (297)
++...++.....+ ..+|++++.|+.+
T Consensus 94 ~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 123 (366)
T PRK07582 94 VPADGYYQVRALAREYLAPLGVTVREAPTA 123 (366)
T ss_pred EeCCCcHhHHHHHHHHHhcCeEEEEEECCC
Confidence 6667776665543 3357666666654
No 364
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=59.11 E-value=38 Score=32.62 Aligned_cols=23 Identities=17% Similarity=-0.195 Sum_probs=20.4
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.-.|+++|||||-.|++.||.+.
T Consensus 105 ~v~f~~sGsEAve~AlklAr~~t 127 (431)
T TIGR03251 105 HLFFIEGGALAVENALKTAFDWK 127 (431)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999763
No 365
>PRK06460 hypothetical protein; Provisional
Probab=58.96 E-value=52 Score=31.00 Aligned_cols=75 Identities=15% Similarity=0.047 Sum_probs=43.0
Q ss_pred ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678 162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241 (297)
Q Consensus 162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~ 241 (297)
.....|...++|+ .+++++|.+. ++++++|++++..++.+. +. ..+
T Consensus 40 ~r~~~p~~~~L~~----~lA~l~g~~~-----------~v~~~sG~~ai~~~l~al----~~--------------~Gd- 85 (376)
T PRK06460 40 SREANPTVLELTK----KIVELENAEM-----------GVAFSSGMGAISTTALAL----LK--------------PGN- 85 (376)
T ss_pred eCCCCccHHHHHH----HHHHHhCCCc-----------EEEeCCHHHHHHHHHHHH----hC--------------CCC-
Confidence 3445576666765 5677788753 556677788777666543 11 012
Q ss_pred EEEecCCC----cchHHHHHHhcCCceEEeeCC
Q psy1678 242 VGYCSDQA----HSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 242 ~i~~s~~a----H~Si~Kaa~~lg~~v~~Vp~d 270 (297)
.|+++... ...+.+.+...|++++.++.+
T Consensus 86 ~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~ 118 (376)
T PRK06460 86 SVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG 118 (376)
T ss_pred EEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC
Confidence 23344322 223345667778877777654
No 366
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=58.10 E-value=1.3e+02 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=17.6
Q ss_pred eEEc-CChhHHHHHHHHHHHHH
Q psy1678 200 GVIQ-GTASEATLVALLGAKAK 220 (297)
Q Consensus 200 G~~t-sGGT~anl~Al~~AR~~ 220 (297)
-+|+ ++|||||-.|++.||.+
T Consensus 129 v~f~~~SGSEAve~AlklAr~~ 150 (464)
T PRK06938 129 IQFCGPTGTDAVEAALKLVKTA 150 (464)
T ss_pred EEEeCCCcHHHHHHHHHHHHHh
Confidence 3454 69999999999999975
No 367
>KOG1403|consensus
Probab=57.80 E-value=7.5 Score=35.77 Aligned_cols=23 Identities=30% Similarity=0.104 Sum_probs=20.9
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
.-.|+..|||||-+||.+||+..
T Consensus 104 vc~F~NSGSEANDLALRLAR~ft 126 (452)
T KOG1403|consen 104 VCFFVNSGSEANDLALRLARNFT 126 (452)
T ss_pred EEEEecCCchhhHHHHHHHHhhc
Confidence 57899999999999999999963
No 368
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=57.66 E-value=33 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~ 220 (297)
+....++.+.|++++..|... ...-.| +++|||||-.|++.||.+
T Consensus 81 ~~~~~~lae~l~~~~~~~~~~------~~~~~f~~~sGseA~e~AlklAr~~ 126 (425)
T PRK09264 81 TTAKREFLETFEETILKPRGL------DYKVQFTGPTGTNAVEAALKLARKV 126 (425)
T ss_pred cHHHHHHHHHHHHhhcCCcCC------CceEEEeCCCHHHHHHHHHHHHHHh
Confidence 344455666777775433210 001346 479999999999999976
No 369
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=57.65 E-value=73 Score=29.43 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=37.4
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH--------HHHHHhcCCceEEeeCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV--------ERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si--------~Kaa~~lg~~v~~Vp~d 270 (297)
..++|+|||.+|.-.-+++--+.+ | -+.+||+++..-.+. .+.++.+|.+|+.++-+
T Consensus 65 ~~vvt~g~s~gN~g~alA~~a~~~------G---------~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~ 129 (331)
T PRK03910 65 DTLITAGAIQSNHARQTAAAAAKL------G---------LKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG 129 (331)
T ss_pred CEEEEcCcchhHHHHHHHHHHHHh------C---------CcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc
Confidence 368899998999865554432221 1 356788887665432 25677789999888765
No 370
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=56.74 E-value=1.5e+02 Score=28.24 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS 251 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~ 251 (297)
+=..+.+|.++..+|.... .+-+|++|- +.++..+-+.+-+ + ...++ +..-.-+
T Consensus 65 ~~~ai~~w~~~r~~~~i~~-------e~i~~~p~V----Vpgi~~~I~~~T~-----------~---gd~Vv-i~tPvY~ 118 (388)
T COG1168 65 LYAAIAHWFKQRHQWEIKP-------EWIVFVPGV----VPGISLAIRALTK-----------P---GDGVV-IQTPVYP 118 (388)
T ss_pred HHHHHHHHHHHhcCCCCCc-------ceEEEcCcc----hHhHHHHHHHhCc-----------C---CCeeE-ecCCCch
Confidence 4456889999999986431 246666654 4455555443221 1 12233 3345677
Q ss_pred hHHHHHHhcCCceEEeeC---CCCCCcCHHHHHHHHHHH
Q psy1678 252 SVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED 287 (297)
Q Consensus 252 Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L~~~i~~~ 287 (297)
.+.++-..-|=+++..|. |..++||.++|++++.+.
T Consensus 119 PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~ 157 (388)
T COG1168 119 PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDE 157 (388)
T ss_pred HHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcC
Confidence 888888888888888886 456788999999988763
No 371
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=56.17 E-value=1.1e+02 Score=26.66 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=30.8
Q ss_pred cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCC
Q psy1678 250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~ 292 (297)
+-...+.|+.+|+.++.+.++.......+.|..++.+.+++|.
T Consensus 45 ~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~ 87 (218)
T TIGR03679 45 IELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGV 87 (218)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCC
Confidence 3455677788999888888874334456678888888777664
No 372
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=54.78 E-value=58 Score=30.04 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=48.8
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH----HHHhcCCceEEeeCCCCCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER----AGLLGGVTIRGLPADDSYK 274 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~ 274 (297)
+-++|-||.+||.....+|-.+.+ | -+.+.++=...---..+ =..++|..++.++...+..
T Consensus 65 dTlvT~GgiQSNh~r~tAavA~~l------G---------l~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~ 129 (323)
T COG2515 65 DTLVTYGGIQSNHVRQTAAVAAKL------G---------LKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIG 129 (323)
T ss_pred cEEEEecccchhHHHHHHHHHHhc------C---------CcEEEEEeccccccccccchhhhhhcCceEEEecCCCChh
Confidence 578999999999988887755432 1 13344432222000111 1235678888888776664
Q ss_pred cCHHHHHHHHHHHHHCCCccEEc
Q psy1678 275 LRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 275 md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
++.. ++...++.+++|..|+.|
T Consensus 130 ~~~~-~~~~~e~~~~~g~kpyvI 151 (323)
T COG2515 130 INAS-AEELAEEVRKQGGKPYVI 151 (323)
T ss_pred hchh-hHHHHHHHHhcCCCCcEe
Confidence 4433 344445556779999875
No 373
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.42 E-value=31 Score=28.77 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccE
Q psy1678 238 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 295 (297)
Q Consensus 238 ~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf 295 (297)
.++..++......+.+...+.++|+++...+.+. .++++..|.+.++.|..-+
T Consensus 77 ~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~-----~~e~~~~i~~~~~~G~~vi 129 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS-----EEEIEAAIKQAKAEGVDVI 129 (176)
T ss_dssp TSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS-----HHHHHHHHHHHHHTT--EE
T ss_pred CCcEEEEecccccHHHHHHHHHhCCceEEEEECC-----HHHHHHHHHHHHHcCCcEE
Confidence 3677777777777889999999999999988874 8899999999999986543
No 374
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=53.14 E-value=78 Score=28.85 Aligned_cols=56 Identities=18% Similarity=0.042 Sum_probs=36.3
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch-HHHHHHhcCCceEEeeC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS-VERAGLLGGVTIRGLPA 269 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S-i~Kaa~~lg~~v~~Vp~ 269 (297)
..++|+|||.+|.-.-+++--+.+ | -+.++|+++..... .....+.+|.+|+.++.
T Consensus 57 ~~vv~~g~ssGN~g~alA~~a~~~------G---------~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~ 113 (311)
T TIGR01275 57 DTVITVGAIQSNHARATALAAKKL------G---------LDAVLVLREKEELNGNLLLDKLMGAETRVYSA 113 (311)
T ss_pred CEEEEcCCchhHHHHHHHHHHHHh------C---------CceEEEecCCccCCCCHHHHHHcCCEEEEECc
Confidence 378999999889876555432221 1 35678888754322 23445788999988874
No 375
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=50.94 E-value=1.3e+02 Score=30.53 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhhhcchh-hhhccccCCC--CCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q psy1678 17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQ-LQRFSQMGSN--IMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEP 93 (297)
Q Consensus 17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~-~~v~p~l~~~--~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p 93 (297)
.+.+.||+.-++++|.+.+..++- .|-- +-+.|..-.. .....+.+++.++++.+.+.+ ...++.+|
T Consensus 14 en~~~~~~~~~~~~~~~~~~r~~~--~p~d~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~--------~sv~~~~P 83 (608)
T TIGR03811 14 ENGQLYKDLLNKLVDEHLGWRQNY--MPQDKPVISPQERTSKSFTKTVNNMKDVLDELSSRLRT--------ESVPWHSA 83 (608)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCHHHhcccccccCccCHHHHHHHHHHHHhc--------CCCCCCCc
Confidence 356789999999999999988772 1111 1222221111 111222344444444443332 23355566
Q ss_pred -hhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhccc
Q psy1678 94 -GYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIAC 158 (297)
Q Consensus 94 -~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~ 158 (297)
.++ .++... .....++.++...... +....|-.|| +..+-.+.+|++..++-
T Consensus 84 ~ry~-ghm~~~-----~~~paila~~~a~~~N-------~n~~~~e~SP~~t~lE~~vi~~la~l~G~ 138 (608)
T TIGR03811 84 GRYW-GHMNSE-----TLMPAILAYNYAMLWN-------GNNVAYESSPATSQMEEEVGKEFATLMGY 138 (608)
T ss_pred cceE-EECcCC-----CCHHHHHHHHHHHHhC-------CCCCccccCchHHHHHHHHHHHHHHHhCC
Confidence 444 443332 2455666665544221 2223333333 34556667777777653
No 376
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=50.43 E-value=48 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHH
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAK 220 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~ 220 (297)
+....++.+.|++++..|... ...-.| +++|||||-.|++.||.+
T Consensus 77 ~~~~~~lae~l~~~~~~~~~~------~~~~~f~~~sGseA~e~AlklAr~~ 122 (412)
T TIGR02407 77 TEAKREFLETFNEIILKPRGL------DYKVQFPGPTGTNAVESALKLARKV 122 (412)
T ss_pred cHHHHHHHHHHHHhccCccCC------CceEEEeCCCchHHHHHHHHHHhhh
Confidence 445555677777775333210 001345 589999999999999976
No 377
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=49.80 E-value=1.3e+02 Score=27.85 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=35.3
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH-HHHHhcCCceEEeeCCCC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE-RAGLLGGVTIRGLPADDS 272 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~-Kaa~~lg~~v~~Vp~d~~ 272 (297)
.++|.|+|.+|...-+++--+.+ | -+.+++++...-.... +.++.+|.+++.++.+.+
T Consensus 72 ~vv~~~~ssGN~g~alA~~a~~~------G---------~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~ 130 (329)
T PRK14045 72 VVITVGAVHSNHAFVTGLAAKKL------G---------LDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDS 130 (329)
T ss_pred EEEEeCccHHHHHHHHHHHHHHc------C---------CeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcc
Confidence 57788899999766655433221 1 2467777754332212 345678988888876543
No 378
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=48.56 E-value=39 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=36.4
Q ss_pred CCCChHHHHHH------HHHHHHHHHHH--Hhhhhh-cchhhhhccc--cCCCCCCChHHHHHHHHH
Q psy1678 15 IMGDVNEFKDF------AKAMVDYVGNY--LENIRD-RYVQLQRFSQ--MGSNIMGDVNEFKDFAKA 70 (297)
Q Consensus 15 ~~~~~~~f~~~------~~~~vd~i~~y--~~~~~~-~~v~~~v~p~--l~~~~p~~~e~f~~~l~~ 70 (297)
...+.+.+..+ -..+++||.|. |+..+. +-+.|.++|+ ||....++.++++.+..-
T Consensus 78 vgl~l~~L~~A~~~r~~~~~Lv~~iknP~~ydg~~~i~~~~~~~K~~~~MPa~~~LsdeEL~aVAaY 144 (163)
T CHL00133 78 VGLDPEALSLATPPRDNIEALVDYMKNPTTYDGLESIAEIHPSIKSADIFPKMRSLTDEDLYAIAGH 144 (163)
T ss_pred CCCCHHHHhhcCCCcccHHHHHHHHhCcccccchHHHHHhhcccCccccCCCCCCCCHHHHHHHHHH
Confidence 34556666443 36778888874 444433 3466889998 999877888886654433
No 379
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=48.00 E-value=25 Score=29.73 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=26.8
Q ss_pred hHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHhhhhh
Q psy1678 3 DQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRD 42 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~f~~~~~~~vd~i~~y~~~~~~ 42 (297)
+-+||++-+=.+...|.+.| +.+||||.+|-+++.-
T Consensus 25 ~iLr~~~~~~~~g~i~y~~v----~~iidFi~nfaDkcHH 60 (189)
T COG3945 25 SILRKALDLIKNGPIDYSDV----KEIIDFIRNFADKCHH 60 (189)
T ss_pred HHHHHHHhcccCCCCCHHHH----HHHHHHHHHHHHhccc
Confidence 34566665555557788877 5799999999998863
No 380
>PLN00061 photosystem II protein Psb27; Provisional
Probab=47.77 E-value=84 Score=25.71 Aligned_cols=68 Identities=13% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhc-
Q psy1678 4 QIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENI- 82 (297)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~- 82 (297)
-++.+|+.. .-|.+.||+...+.-+-|.+|..+-+.++ .|. .-.+|..+ +.++..+..|+.+.
T Consensus 66 tLresl~l~---p~D~~~~~~aa~~Ake~IndYisryR~~~---~V~---------gl~SfttM-qtALnsLAghYssyG 129 (150)
T PLN00061 66 TLRESLKED---PKDEAKFRRTADAAKESIREYLGNWRGQK---TVA---------EEESYVEL-EKAIRSLASFYSKAG 129 (150)
T ss_pred HHHHHHccC---CcchHHHHHHHHHHHHHHHHHHHHhcCCc---ccc---------ccchHHHH-HHHHHHHHHHHHhcC
Confidence 345556542 26788899988888888888877665433 222 11334443 45666677777775
Q ss_pred CCCCC
Q psy1678 83 RDRRV 87 (297)
Q Consensus 83 ~~~pv 87 (297)
.++|+
T Consensus 130 pnrPL 134 (150)
T PLN00061 130 PSAPL 134 (150)
T ss_pred CCCCC
Confidence 55554
No 381
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.58 E-value=25 Score=26.49 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=23.1
Q ss_pred hHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHH
Q psy1678 3 DQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGN 35 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~f~~~~~~~vd~i~~ 35 (297)
.+|++||.||+- +||++ +-++.|+||...
T Consensus 64 eeiK~aI~~G~y-kvD~~---kiAd~ll~f~~~ 92 (93)
T COG2747 64 EELKQAIENGEY-KVDTE---KIADKLLDFAKQ 92 (93)
T ss_pred HHHHHHHHcCCe-eecHH---HHHHHHHHHHhc
Confidence 478999999985 67776 578899998764
No 382
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=46.36 E-value=1.5e+02 Score=25.91 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc----hHHHHHHhcCCceEEeeCC
Q psy1678 198 GGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS----SVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 198 ~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d 270 (297)
..|++.|||--|.+.|.++++.... . ..-..+ .....++ -..+.|+.+|++...+.++
T Consensus 17 ~v~~~LSGGlDSs~va~~~~~~~~~------~--------~~~~~~-~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~ 78 (269)
T cd01991 17 PVGVLLSGGLDSSLVAALAARLLPE------P--------VKTFSI-GFGFEGSDEREYARRVAEHLGTEHHEVEFT 78 (269)
T ss_pred ceEEeecccHHHHHHHHHHHHhhCC------C--------CceEEE-eeCCCCCChHHHHHHHHHHhCCcceEEEcC
Confidence 3699999999999998887654210 0 111222 2223333 3566777889877777654
No 383
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=46.02 E-value=1.4e+02 Score=25.37 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=45.4
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC---------CcchHHHHHHhcCCceEEeeCC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ---------AHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~---------aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
.+.-|||--|.+.+.++.+. |.++ .-+.+..+.. .+-.+.+.|..+|+.++.+.++
T Consensus 3 ~v~~SGGkDS~~al~~a~~~---------G~~v------~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~ 67 (194)
T cd01994 3 VALISGGKDSCYALYRALEE---------GHEV------VALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEIS 67 (194)
T ss_pred EEEecCCHHHHHHHHHHHHc---------CCEE------EEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCC
Confidence 46779999999887776542 1100 0111111111 2335567778899988888765
Q ss_pred CCCCcCHHHHHHHHHHHHHCC
Q psy1678 271 DSYKLRGDALEAAIEEDLKKG 291 (297)
Q Consensus 271 ~~~~md~~~L~~~i~~~~~~G 291 (297)
.+..-=.+.|.+.|++..++|
T Consensus 68 ~~~e~~~~~l~~~l~~~~~~g 88 (194)
T cd01994 68 GEEEDEVEDLKELLRKLKEEG 88 (194)
T ss_pred CCchHHHHHHHHHHHHHHHcC
Confidence 432233377777887766655
No 384
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=45.43 E-value=80 Score=29.53 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=32.5
Q ss_pred ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc-CChhHHHHHHHHH
Q psy1678 164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ-GTASEATLVALLG 216 (297)
Q Consensus 164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t-sGGT~anl~Al~~ 216 (297)
..++-...+=.++.+.+++++|.+++ ..-+|| ++||.++-.++..
T Consensus 34 hr~~~f~~~~~~~r~~l~~l~~~~~~--------~~v~f~~gs~T~a~~~~~~~ 79 (361)
T TIGR01366 34 HRQAPVKNLVGRVREGLAELFSLPDG--------YEVILGNGGATAFWDAATFG 79 (361)
T ss_pred cCChHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCchhHHHHHHHHh
Confidence 34555666666799999999999753 146776 5599988877755
No 385
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=43.68 E-value=55 Score=26.83 Aligned_cols=44 Identities=7% Similarity=0.072 Sum_probs=31.4
Q ss_pred chhhHHHHHHHHHHHHHcCC--CccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 167 PACTELEVVMLDWLGKMLDL--PKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~--~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
....++=+.+.+|+.+..|. +-. ...-++|+|++.++..++.+-
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~-------pd~Ivvt~Ga~~al~~l~~~l 137 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFD-------ADMIVLSAGATAANEIIMFCI 137 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccc-------hhheEEcCCHHHHHHHHHHHH
Confidence 34556777888999999883 211 126899999999988776653
No 386
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=42.21 E-value=87 Score=29.57 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHhccccc---cccccC---chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHH
Q psy1678 143 SYPAIVADILSDSIACIG---FTWIAS---PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVA 213 (297)
Q Consensus 143 ~~~svl~d~l~~~lN~n~---~~~~~~---p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~A 213 (297)
.+++++-..-..+.|.++ ...+.| .....+=.++.+-+.+|++.|+++. -+.+..|+|...-++
T Consensus 16 lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~-------VlflqGGat~qf~~~ 85 (365)
T COG1932 16 LPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYK-------VLFLQGGATGQFAMA 85 (365)
T ss_pred CCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCce-------EEEEcCccHHHHHHH
Confidence 566777666666666655 223333 2334444568899999999999752 344445555444333
No 387
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=42.17 E-value=85 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.7
Q ss_pred ceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 263 TIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 263 ~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++.|++--.|++|+..+.+++++
T Consensus 28 ~vriIrvpC~Grv~~~~il~Af~~ 51 (124)
T PF02662_consen 28 NVRIIRVPCSGRVDPEFILRAFEK 51 (124)
T ss_pred CeEEEEccCCCccCHHHHHHHHHc
Confidence 566666666789999998888865
No 388
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=41.11 E-value=17 Score=22.28 Aligned_cols=24 Identities=13% Similarity=0.484 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q psy1678 21 EFKDFAKAMVDYVGNYLENIRDRY 44 (297)
Q Consensus 21 ~f~~~~~~~vd~i~~y~~~~~~~~ 44 (297)
=.+++-...++|.++|++.+++.+
T Consensus 14 vl~~qP~d~~~f~~~yF~kL~~~r 37 (38)
T smart00394 14 VLRAQPSDLVQFAADYFEKLEEQR 37 (38)
T ss_pred HHHHCCCcHHHHHHHHHHHHHHcc
Confidence 345666778999999999887643
No 389
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=40.34 E-value=80 Score=27.74 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=46.8
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC---------cchHHHHHHhcCCceEEeeCC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA---------HSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a---------H~Si~Kaa~~lg~~v~~Vp~d 270 (297)
-.+-|||--|++...++.+. |.+ ...++.+.++.. |-.....|+.+|+.++...++
T Consensus 4 ~aL~SGGKDS~~Al~~a~~~---------G~e------V~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~ 68 (223)
T COG2102 4 IALYSGGKDSFYALYLALEE---------GHE------VVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTS 68 (223)
T ss_pred EEEEecCcHHHHHHHHHHHc---------CCe------eEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecC
Confidence 45779999996544444322 111 122333333333 224455677789999999888
Q ss_pred CCCCcCHHHHHHHHHHHHHC
Q psy1678 271 DSYKLRGDALEAAIEEDLKK 290 (297)
Q Consensus 271 ~~~~md~~~L~~~i~~~~~~ 290 (297)
....-.++.|.++|+.....
T Consensus 69 g~~e~eve~L~~~l~~l~~d 88 (223)
T COG2102 69 GEEEREVEELKEALRRLKVD 88 (223)
T ss_pred ccchhhHHHHHHHHHhCccc
Confidence 76667788888888765533
No 390
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=39.35 E-value=26 Score=21.60 Aligned_cols=24 Identities=8% Similarity=0.475 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q psy1678 21 EFKDFAKAMVDYVGNYLENIRDRY 44 (297)
Q Consensus 21 ~f~~~~~~~vd~i~~y~~~~~~~~ 44 (297)
=+|++=..+++|.++|++.+.+.|
T Consensus 14 vl~~qP~Di~~F~a~yF~~L~~~R 37 (38)
T PF02197_consen 14 VLREQPDDILQFAADYFEKLEKQR 37 (38)
T ss_dssp HHHH--S-HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHhh
Confidence 345666778999999999887643
No 391
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=39.01 E-value=1.1e+02 Score=24.63 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=31.4
Q ss_pred hHHHHHhhcCCCCCCChHHHHHHHHH-HHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q psy1678 3 DQIHKKIKNGSIIMGDVNEFKDFAKA-MVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLEN 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~f~~~~~~-~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~ 81 (297)
++++.+|.. .-+..+-++....+++ +-|||+.|.. .++|- |+ .+|.. ++-++..+.-|+.+
T Consensus 46 ~tlr~~i~l-pkd~p~~~~a~~~ar~~indyvsrYRr-------~~~v~-g~--------~SFtt-m~TALNsLAGHY~s 107 (135)
T TIGR03044 46 QTLREAIDL-PDDDPNKSEAQAEARQLINDYISRYRR-------RPRVN-GL--------SSFTT-MQTALNSLAGHYKS 107 (135)
T ss_pred HHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHhcC-------CCCcC-Cc--------ccHHH-HHHHHHHHHHHhcc
Confidence 456666666 3444444444444433 3345544432 22221 22 22333 23445556667766
Q ss_pred cCCCCC
Q psy1678 82 IRDRRV 87 (297)
Q Consensus 82 ~~~~pv 87 (297)
..++|+
T Consensus 108 y~~rPl 113 (135)
T TIGR03044 108 YANRPL 113 (135)
T ss_pred CCCCCC
Confidence 555554
No 392
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=38.80 E-value=1.5e+02 Score=27.50 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=33.7
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC-Cc--ch-----HHHHHHhcCCceEEeeCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ-AH--SS-----VERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~-aH--~S-----i~Kaa~~lg~~v~~Vp~d 270 (297)
.-++++|||.+|.-.-+++--+.+ | -+.++++++. .+ .+ -.+..+.+|.+|+.++.+
T Consensus 68 ~~vvs~G~s~GN~g~alA~aa~~~------G---------~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~ 132 (337)
T PRK12390 68 DTLVSIGGVQSNHTRQVAAVAAHL------G---------MKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG 132 (337)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHc------C---------CeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC
Confidence 366788999999876666533321 1 2456665432 21 11 122456789999988764
No 393
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=38.12 E-value=2.6e+02 Score=25.42 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
..++. .+.-+++-+|..-.-.......--++|.|| +-+||.||.-|... | ....+++++.|.
T Consensus 64 ~~L~~-~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg-~g~nl~al~~~~~~--------~------~~~~~i~~visn-- 125 (286)
T PRK13011 64 DALRA-GFAPIAARFGMQWELHDPAARPKVLIMVSK-FDHCLNDLLYRWRI--------G------ELPMDIVGVVSN-- 125 (286)
T ss_pred HHHHH-HHHHHHHHhCcEEEEeecccCceEEEEEcC-CcccHHHHHHHHHc--------C------CCCcEEEEEEEC--
Confidence 44543 455677777754211111111223667776 57899999976432 1 012456666675
Q ss_pred cchHHHHHHhcCCceEEeeCCCC
Q psy1678 250 HSSVERAGLLGGVTIRGLPADDS 272 (297)
Q Consensus 250 H~Si~Kaa~~lg~~v~~Vp~d~~ 272 (297)
|..+...|.-.|+.+..++.++.
T Consensus 126 ~~~~~~lA~~~gIp~~~~~~~~~ 148 (286)
T PRK13011 126 HPDLEPLAAWHGIPFHHFPITPD 148 (286)
T ss_pred CccHHHHHHHhCCCEEEeCCCcC
Confidence 55566668888998888876543
No 394
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=37.66 E-value=1.9e+02 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=26.5
Q ss_pred cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678 163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA 217 (297)
Q Consensus 163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A 217 (297)
....|....+|+ -++.|-|.. ..++++.|.-|+..++.+.
T Consensus 51 R~gnPt~~~le~----~la~Le~g~-----------~a~~~~SGmaAi~~~l~~l 90 (386)
T PF01053_consen 51 RYGNPTVRALEQ----RLAALEGGE-----------DALLFSSGMAAISAALLAL 90 (386)
T ss_dssp TTC-HHHHHHHH----HHHHHHT-S-----------EEEEESSHHHHHHHHHHHH
T ss_pred ccccccHHHHHH----HHHHhhccc-----------ceeeccchHHHHHHHHHhh
Confidence 344677777886 446777663 3777888888887777653
No 395
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=36.32 E-value=2.9e+02 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHH
Q psy1678 172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV 212 (297)
Q Consensus 172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~ 212 (297)
-+.++.++|.+++|++-+ ...++|||...+.+.
T Consensus 43 ~~~~~~~~l~~~~g~~~~--------~~~iits~~~~~~~l 75 (236)
T TIGR01460 43 SEEDYAEKLSSLLGVDVS--------PDQIITSGSVTKDLL 75 (236)
T ss_pred CHHHHHHHHHHhcCCCCC--------HHHeeeHHHHHHHHH
Confidence 344556667776676543 256667666555444
No 396
>PF12728 HTH_17: Helix-turn-helix domain
Probab=36.09 E-value=28 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=24.3
Q ss_pred chHHHHHHhcCCc------------eEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 251 SSVERAGLLGGVT------------IRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 251 ~Si~Kaa~~lg~~------------v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+|+..+|.+||+. +..+......+++.++|++.+++
T Consensus 2 lt~~e~a~~l~is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 4677788888761 22333445578888998888875
No 397
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=34.64 E-value=1.4e+02 Score=19.74 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=31.9
Q ss_pred eEEEecCCCcchHH--HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 241 LVGYCSDQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 241 ~~i~~s~~aH~Si~--Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
+++|.+..+++|.. ....-.|+....+.+|.+. ...+.+.+....+.+|.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~-----~~~~~~~~~~~~~~vP~i~ 55 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP-----EALEELKKLNGYRSVPVVV 55 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH-----HHHHHHHHHcCCcccCEEE
Confidence 57888888887753 4445568888888887632 2333444333446677653
No 398
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=34.29 E-value=1.3e+02 Score=31.77 Aligned_cols=23 Identities=30% Similarity=0.044 Sum_probs=20.0
Q ss_pred CeEEcCChhHHHHHHHHHHHHHH
Q psy1678 199 GGVIQGTASEATLVALLGAKAKT 221 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~ 221 (297)
--.||++||+||=.||+.||.+.
T Consensus 429 rVffs~sGSeAvE~AlKmA~r~y 451 (817)
T PLN02974 429 RVFFSDNGSTAIEVALKMAFRKF 451 (817)
T ss_pred EEEECCchHHHHHHHHHHHHHHH
Confidence 47899999999999999997643
No 399
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.02 E-value=2.1e+02 Score=21.78 Aligned_cols=65 Identities=23% Similarity=0.148 Sum_probs=46.2
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHH
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDA 279 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~ 279 (297)
++-.||-|...+.++..||++ | -+.+.+++.. .+.+.|.=.|+-+..||.+..+|...-.
T Consensus 49 ~iS~SG~t~e~i~~~~~a~~~--------g---------~~iI~IT~~~---~l~~~~~~~~~~~~~~p~~~~~r~s~~~ 108 (119)
T cd05017 49 AVSYSGNTEETLSAVEQAKER--------G---------AKIVAITSGG---KLLEMAREHGVPVIIIPKGLQPRAAFPY 108 (119)
T ss_pred EEECCCCCHHHHHHHHHHHHC--------C---------CEEEEEeCCc---hHHHHHHHcCCcEEECCCCCCCceeHHH
Confidence 444488899999988888764 1 2455556533 4777776558888889999889988777
Q ss_pred HHHHH
Q psy1678 280 LEAAI 284 (297)
Q Consensus 280 L~~~i 284 (297)
|-..+
T Consensus 109 ~~~~~ 113 (119)
T cd05017 109 LFTAL 113 (119)
T ss_pred HHHHH
Confidence 66554
No 400
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.83 E-value=1.1e+02 Score=23.60 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=25.3
Q ss_pred hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
.+.++|+-+|+..+.||++. +.+..+.+++..+.-.... .|+++
T Consensus 48 ~~~~~a~~~Gl~y~~iPv~~-~~~~~~~v~~f~~~l~~~~-~Pvl~ 91 (110)
T PF04273_consen 48 EEAAAAEALGLQYVHIPVDG-GAITEEDVEAFADALESLP-KPVLA 91 (110)
T ss_dssp CHHHHHHHCT-EEEE----T-TT--HHHHHHHHHHHHTTT-TSEEE
T ss_pred HHHHHHHHcCCeEEEeecCC-CCCCHHHHHHHHHHHHhCC-CCEEE
Confidence 46789999999999999997 4578777776655444333 36653
No 401
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=33.81 E-value=96 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678 149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKE 189 (297)
Q Consensus 149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~ 189 (297)
...+..+.+.......-.|..+..|+.++-.+|+-+|+...
T Consensus 5 ~~~i~~F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 5 NKALEDFRASDNEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred HHHHHHHHcCcccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 34455555544333444566899999999999999999753
No 402
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.29 E-value=3.4e+02 Score=24.80 Aligned_cols=83 Identities=11% Similarity=0.117 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.++. .++-+++-+|..-.-...+...--++|.||. -+||.|+.-+... | ....+++++.|..
T Consensus 69 ~l~~-~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg~-g~nl~al~~~~~~--------~------~l~~~i~~visn~-- 130 (289)
T PRK13010 69 TFRQ-EFQPVAEKFDMQWAIHPDGQRPKVVIMVSKF-DHCLNDLLYRWRM--------G------ELDMDIVGIISNH-- 130 (289)
T ss_pred HHHH-HHHHHHHHhCCeEEEecCCCCeEEEEEEeCC-CccHHHHHHHHHC--------C------CCCcEEEEEEECC--
Confidence 4443 4556777777642211111222347777754 6799999987432 1 1124667777744
Q ss_pred chHHHHHHhcCCceEEeeCCC
Q psy1678 251 SSVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 251 ~Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
..+.+-|.-.|+.+..++..+
T Consensus 131 ~~~~~~A~~~gIp~~~~~~~~ 151 (289)
T PRK13010 131 PDLQPLAVQHDIPFHHLPVTP 151 (289)
T ss_pred hhHHHHHHHcCCCEEEeCCCc
Confidence 445566777899988888764
No 403
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=33.03 E-value=4e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcC
Q psy1678 55 SNIMGDVNEFKDFAKAMVDYVGNYLENIR 83 (297)
Q Consensus 55 ~~~p~~~e~f~~~l~~v~d~i~~~~~~~~ 83 (297)
...+.+.+++.++.+..++.+.+....+.
T Consensus 91 ~~~~~~~~eL~~l~~~li~~~N~l~~~i~ 119 (318)
T PF12725_consen 91 ETEEYSTEELKELTEYLIEKANELREQIT 119 (318)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34468899999999999999998777643
No 404
>PRK10638 glutaredoxin 3; Provisional
Probab=31.44 E-value=1.9e+02 Score=20.42 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=33.3
Q ss_pred ceEEEecCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEE
Q psy1678 240 NLVGYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296 (297)
Q Consensus 240 ~~~i~~s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~ 296 (297)
++++|......||. .+...-.|+....++++.+. ...+.+.+....+.+|.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~-----~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA-----AKREEMIKRSGRTTVPQI 56 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH-----HHHHHHHHHhCCCCcCEE
Confidence 56788888887765 23444568887788887642 234445555556667865
No 405
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=31.34 E-value=2.2e+02 Score=24.94 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=42.0
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC---------CcchHHHHHHhcCCceEEeeCC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ---------AHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~---------aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
.++-|||--|++...++-++ . . ...++-+.++. .+--+..-|..+|+.++.++++
T Consensus 4 ~~l~SGGKDS~~al~~a~~~-~-~--------------v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (223)
T TIGR00290 4 AALISGGKDSCLALYHALKE-H-E--------------VISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTE 67 (223)
T ss_pred EEEecCcHHHHHHHHHHHHh-C-e--------------eEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecC
Confidence 35679999999877766544 2 1 00111112221 2245567788899998888876
Q ss_pred CCCCcCHHHHHHHHHH
Q psy1678 271 DSYKLRGDALEAAIEE 286 (297)
Q Consensus 271 ~~~~md~~~L~~~i~~ 286 (297)
....--.+.|++.+++
T Consensus 68 ~~~e~~~e~l~~~l~~ 83 (223)
T TIGR00290 68 GTEEDEVEELKGILHT 83 (223)
T ss_pred CCccHHHHHHHHHHHH
Confidence 5444455666666644
No 406
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=31.33 E-value=1.9e+02 Score=24.97 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKE 189 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~ 189 (297)
.+.+.++++.....+. .+-.||.+.... .....+..++..+-+-+.....+.-.+...++ .+++|.++ |+
T Consensus 71 ~~~M~~dI~~~~~~Ga----dG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~-al~~L~~l-G~--- 141 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGA----DGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEE-ALEQLIEL-GF--- 141 (201)
T ss_dssp HHHHHHHHHHHHHTT-----SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHH-HHHHHHHH-T----
T ss_pred HHHHHHHHHHHHHcCC----CeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHH-HHHHHHhc-CC---
Confidence 4556666665544333 345688886654 34566677777665554433334333343443 67888888 87
Q ss_pred ccccCCCCCCeEEcCChhHHHHHHHHHHH
Q psy1678 190 FLACSGGKGGGVIQGTASEATLVALLGAK 218 (297)
Q Consensus 190 ~~~~~~~~~~G~~tsGGT~anl~Al~~AR 218 (297)
..++||||......++-.-+
T Consensus 142 ---------~rVLTSGg~~~a~~g~~~L~ 161 (201)
T PF03932_consen 142 ---------DRVLTSGGAPTALEGIENLK 161 (201)
T ss_dssp ---------SEEEESTTSSSTTTCHHHHH
T ss_pred ---------CEEECCCCCCCHHHHHHHHH
Confidence 48999999965555544433
No 407
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=31.16 E-value=69 Score=26.89 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=8.5
Q ss_pred CeEEcCChhH
Q psy1678 199 GGVIQGTASE 208 (297)
Q Consensus 199 ~G~~tsGGT~ 208 (297)
+.++|+|||-
T Consensus 69 DvvlttGGTG 78 (169)
T COG0521 69 DVVLTTGGTG 78 (169)
T ss_pred CEEEEcCCcc
Confidence 5899999984
No 408
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=30.95 E-value=53 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
..=++++++|++.||.|.+ .-.+.+|.|
T Consensus 40 kAN~ali~~La~~l~v~ks---------~i~i~~G~~ 67 (77)
T PF02594_consen 40 KANKALIRFLAKALGVPKS---------DIEIVSGHT 67 (77)
T ss_dssp CHHHHHHHHHHHHCT--TT---------CEEECC-CC
T ss_pred hhHHHHHHHHHHHhCCCcc---------cEEEEecCC
Confidence 4456799999999999985 466677654
No 409
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=30.88 E-value=3e+02 Score=23.21 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=45.6
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch---HHHHHHhcCCceEEeeCCCCCCcC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS---VERAGLLGGVTIRGLPADDSYKLR 276 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S---i~Kaa~~lg~~v~~Vp~d~~~~md 276 (297)
+++-|||-.|-|.|+..-|- + ....++- |.--.|.+ -.++|.++|+.-+.+ ++|
T Consensus 4 ~vLfSGGKDSSLaA~iL~kl------g----------yev~LVT-vnFGv~d~~k~A~~tA~~lgF~h~vl------~Ld 60 (198)
T COG2117 4 YVLFSGGKDSSLAALILDKL------G----------YEVELVT-VNFGVLDSWKYARETAAILGFPHEVL------QLD 60 (198)
T ss_pred EEEecCCCchhHHHHHHHHh------C----------CCcEEEE-EEeccccchhhHHHHHHHhCCCccee------ccC
Confidence 67889999999988876432 1 1123322 23333333 466788999955544 556
Q ss_pred HHHHHHHHHHHHHCCC
Q psy1678 277 GDALEAAIEEDLKKGK 292 (297)
Q Consensus 277 ~~~L~~~i~~~~~~G~ 292 (297)
-+-|+++.+-+.+.|+
T Consensus 61 r~ile~A~em~iedg~ 76 (198)
T COG2117 61 REILEDAVEMIIEDGY 76 (198)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6788888888888775
No 410
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=30.25 E-value=2.4e+02 Score=25.55 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=38.1
Q ss_pred EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC
Q psy1678 201 VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 201 ~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
+-+|+|..+.-+|..+++. | -+..|++++.+-..-.+..+.+|.+|+.++.+
T Consensus 63 v~aSsGN~g~alA~~a~~~---------G---------~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~ 114 (290)
T TIGR01138 63 IEATSGNTGIALAMIAALK---------G---------YRMKLLMPDNMSQERKAAMRAYGAELILVTKE 114 (290)
T ss_pred EEECCChHHHHHHHHHHHc---------C---------CeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3347777777666665431 1 35789999988878888888999999998754
No 411
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=30.14 E-value=55 Score=30.96 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=53.3
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCC
Q psy1678 52 QMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHS 131 (297)
Q Consensus 52 ~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~ 131 (297)
.++...|..+++++++++++.+.+.+ .+.++.+|.++ ..++. |.+...++.++......
T Consensus 7 ~~~~~lp~~~~~~~~vl~~~~~~l~~--------~~~~~~~P~~~-~~~~~-----~~~~~~i~~~~l~~~~n------- 65 (373)
T PF00282_consen 7 RLDEELPEEGESLEEVLKDLREILAP--------GVTHWHHPRFF-GFVPG-----GPSPASILADLLASALN------- 65 (373)
T ss_dssp GCHCCHHSSHH-HHHHHHHHHHHTHG--------CS-TTTSTTBE-SSSHT-------CHHHHHHHHHHHHHT-------
T ss_pred cCccccccCCCCHHHHHHHHHHHhhc--------cCCCCCChhHh-hhccC-----CccHHHHHHHHHHhhhc-------
Confidence 36677788889888888888777665 45556667766 33332 24577777776655332
Q ss_pred ccccccCCCC--CCHHHHHHHHHHHhcccc
Q psy1678 132 PKFHAYFPTA--NSYPAIVADILSDSIACI 159 (297)
Q Consensus 132 p~~~g~~~s~--~~~~svl~d~l~~~lN~n 159 (297)
+..+.|-.+| ...+..+.+|+..+++-+
T Consensus 66 ~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~ 95 (373)
T PF00282_consen 66 QNGFTWEASPAATEIEREVIRWLADLFGLP 95 (373)
T ss_dssp -BTTSTTTSHHHHHHHHHHHHHHHHHTTGS
T ss_pred ccccccccccccccchHHHHHHHHHHhCCc
Confidence 1122333333 355677789999998877
No 412
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.04 E-value=96 Score=23.34 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred EEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEE
Q psy1678 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296 (297)
Q Consensus 242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~ 296 (297)
.|.++...|+.+-+.+--.|+ .|=+++-..++++.+++.++...++|.. +.
T Consensus 67 ~I~tp~~~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~-~~ 117 (120)
T PF01408_consen 67 IIATPPSSHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVK-VM 117 (120)
T ss_dssp EEESSGGGHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSC-EE
T ss_pred EEecCCcchHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCE-EE
Confidence 444567889988888877787 4556777788999999999999998854 44
No 413
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=29.17 E-value=1.5e+02 Score=25.18 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchh
Q psy1678 107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPAC 169 (297)
Q Consensus 107 ~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~ 169 (297)
+|++++++...+.+.............|+-|+++|+..+-+.--+|+.+=--++-.-..||.-
T Consensus 80 dPWDfeeVY~~l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQIc~FLL~Esr~lPa~LlQtsP~~ 142 (183)
T PF06956_consen 80 DPWDFEEVYAALHDFARGYPFDPENEDYLVHITTGTHVAQICWFLLTESRYLPARLLQTSPPR 142 (183)
T ss_pred CCccHHHHHHHHHHHHhhCCCCCCCCceEEEecCCcHHHHHHHHHHHHhccccHHHhccCCCc
Confidence 569999999999998877777777889999999887766666566666544444444555553
No 414
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=28.31 E-value=49 Score=20.40 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=21.1
Q ss_pred chHHHHHHhcCCc------------eEEeeCCCCCCcCHHHHHHHHH
Q psy1678 251 SSVERAGLLGGVT------------IRGLPADDSYKLRGDALEAAIE 285 (297)
Q Consensus 251 ~Si~Kaa~~lg~~------------v~~Vp~d~~~~md~~~L~~~i~ 285 (297)
+++..+|+++|+. +..+.+....+++.++|.+.++
T Consensus 2 lt~~e~a~~lgis~~ti~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYRLIHEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 3567777777761 1222234556777887777664
No 415
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.09 E-value=41 Score=32.51 Aligned_cols=82 Identities=22% Similarity=0.177 Sum_probs=57.9
Q ss_pred hHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhh------------------c---cc----cCCCC
Q psy1678 3 DQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQR------------------F---SQ----MGSNI 57 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v------------------~---p~----l~~~~ 57 (297)
|.||--|--=++-+|.++.|-+.=--+.||+|.|+...|+|..--.+ + .| |-...
T Consensus 355 DR~H~yiPGWEiPK~rpehft~rYG~isDY~AE~~reMRKrS~sd~i~rf~kLgnNlnqRDviavkrt~SGLlKLL~Pd~ 434 (683)
T COG4930 355 DRIHGYIPGWEIPKIRPEHFTKRYGVISDYFAEALREMRKRSLSDLIGRFVKLGNNLNQRDVIAVKRTTSGLLKLLFPDK 434 (683)
T ss_pred HHHhccCccccCccCCHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 67888888888999999999988888999999999888875431111 1 13 22334
Q ss_pred CCChHHHHHHHHH---HHHHHHHHHHhcCC
Q psy1678 58 MGDVNEFKDFAKA---MVDYVGNYLENIRD 84 (297)
Q Consensus 58 p~~~e~f~~~l~~---v~d~i~~~~~~~~~ 84 (297)
..+.++.+.+++- ..+.+.++++.+..
T Consensus 435 t~~kee~k~ileyAle~RrRVkeqLkKigg 464 (683)
T COG4930 435 TFDKEELKTILEYALELRRRVKEQLKKIGG 464 (683)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5677777776654 44567788887643
No 416
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=27.38 E-value=1.3e+02 Score=23.09 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhhhcchh-hhhcc-c-cCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy1678 15 IMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQ-LQRFS-Q-MGSNIMGDVNEFKDFAKAMVDYVGNYLE 80 (297)
Q Consensus 15 ~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~-~~v~p-~-l~~~~p~~~e~f~~~l~~v~d~i~~~~~ 80 (297)
..++...|+.+++.+++.+....+++.+...+ +.++- | -......+++.|..+.+.+++.+.+++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~l~~~l~~lg~~H~~~~v~~~~~~~~~~~l~~~l~~~~~ 118 (140)
T cd01040 50 ALKGSPKFKAHGKRVLNALDEAIKNLDDLEALKALLAKLGRKHAKRGVDPEHFKLFGEALLEVLAEVLG 118 (140)
T ss_pred hHccCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999998774332 22221 1 1111123667777777777777766544
No 417
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=27.07 E-value=1.2e+02 Score=24.09 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=26.8
Q ss_pred ceEEEecCCCcchHHHHHHhcCC-------ceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678 240 NLVGYCSDQAHSSVERAGLLGGV-------TIRGLPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 240 ~~~i~~s~~aH~Si~Kaa~~lg~-------~v~~Vp~d~~~~md~~~L~~~i~~ 286 (297)
+++.+|....-|- ||++.|. ++|.|+|--.||++++-.-+++++
T Consensus 2 ~ii~F~C~wcsyg---aaDlag~~rmqyp~~vRiIrv~CsGrvn~~fvl~Al~~ 52 (132)
T COG1908 2 KIIAFACNWCSYG---AADLAGTSRMQYPPNVRIIRVMCSGRVNPEFVLKALRK 52 (132)
T ss_pred eEEEEEccccccc---chhhhccccccCCCceEEEEeeccCccCHHHHHHHHHc
Confidence 3455555444333 4444443 577777777789999877666654
No 418
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.88 E-value=2.8e+02 Score=23.98 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=41.2
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCH
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRG 277 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~ 277 (297)
++|.| |+-+|+.|+.-|.+.. ....+.+++.|........+-|.-.|+.+..++..+. -...-
T Consensus 3 ~vl~S-g~Gsn~~al~~~~~~~--------------~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~ 67 (207)
T PLN02331 3 AVFVS-GGGSNFRAIHDACLDG--------------RVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSP 67 (207)
T ss_pred EEEEe-CCChhHHHHHHHHHcC--------------CCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccch
Confidence 44554 3456999988774321 1124566666766666666666667998876655431 23334
Q ss_pred HHHHHHHHH
Q psy1678 278 DALEAAIEE 286 (297)
Q Consensus 278 ~~L~~~i~~ 286 (297)
+++.+.|++
T Consensus 68 ~~~~~~l~~ 76 (207)
T PLN02331 68 DELVDALRG 76 (207)
T ss_pred HHHHHHHHh
Confidence 455555544
No 419
>PLN02356 phosphateglycerate kinase
Probab=26.80 E-value=2.2e+02 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=36.7
Q ss_pred CeEEc--CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678 199 GGVIQ--GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA 269 (297)
Q Consensus 199 ~G~~t--sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~ 269 (297)
+|+++ |+|..+.-+|+.+++. | -+.+|++++.+-..-.+..+.+|.+|+.++-
T Consensus 104 ~g~VveaSSGN~g~alA~~aa~~---------G---------~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~ 158 (423)
T PLN02356 104 GGVVTEGSAGSTAISLATVAPAY---------G---------CKCHVVIPDDVAIEKSQILEALGATVERVRP 158 (423)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc---------C---------CcEEEEECCCCcHHHHHHHHHcCCEEEEECC
Confidence 45555 8888888777776532 1 3678889875555555566778999998864
No 420
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=26.68 E-value=78 Score=29.72 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH 250 (297)
Q Consensus 171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH 250 (297)
.+-..+.+.|+.|+|.-+ +=+...++|-.|+.-++.|--+.. .++. +++||..-
T Consensus 76 ~lp~~lgdklApLiGA~~----------~Evvv~dtts~nl~k~L~aalr~~---------------~~r~-vIv~E~~~ 129 (407)
T COG3844 76 DLPERLGDKLAPLIGARA----------GEVVVTDTTSINLFKVLAAALRPQ---------------EGRR-VIVSEGDN 129 (407)
T ss_pred hchhHHHHHhhhhhcCCC----------CceEEeCCcchHHHHHHHHHhccC---------------CCce-EEeecCCC
Confidence 355578999999999976 345566777788887777632210 1233 44565444
Q ss_pred ch-----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678 251 SS-----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 288 (297)
Q Consensus 251 ~S-----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~ 288 (297)
+- .+--|.++|+. -|-.+++.|.++++++.+++
T Consensus 130 fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~dd~ 167 (407)
T COG3844 130 FPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAITDDV 167 (407)
T ss_pred CCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhccce
Confidence 32 33344555543 34456777888888887765
No 421
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=26.53 E-value=2.3e+02 Score=24.86 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=35.6
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHh-hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKE-AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
.++.|||--|++.+.++.++ . +... -.. ..+ ... ....-...+--+.+.|+.+|+.++.+.+..
T Consensus 4 ~vl~SGGKDS~lAl~~~~~~-~--~V~~L~~~-~~~---~~~-s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 4 AVLYSGGKDSILALYKALEE-H--EVISLVGV-FSE---NEE-SYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred EEEecCcHHHHHHHHHHHHc-C--eeEEEEEE-cCC---CCC-ccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 46789999999888877554 2 1000 000 000 001 111112344566788889999888877654
No 422
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=26.03 E-value=6.1e+02 Score=24.52 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=35.7
Q ss_pred CCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc----hHHHHHHhcCCceEEeeCCC
Q psy1678 198 GGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS----SVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 198 ~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
.-|++-|||--|.+.|.++++.....+ ..-+.+-......+ ...+.|+.+|+....|.+++
T Consensus 255 ~vg~~LSGGlDSs~iaa~a~~~~~~~~-------------~~~~t~~~~~~~~~~E~~~A~~vA~~lg~~~~~i~~~~ 319 (467)
T TIGR01536 255 PVGVLLSGGLDSSLVAAIARREAPRGP-------------VHTFSIGFEGSPDFDESPYARKVADHLGTEHHEVLFSV 319 (467)
T ss_pred ceEEEecCChhHHHHHHHHHHhcCCCC-------------ceEEEEecCCCCCCChHHHHHHHHHHhCCcCeEEECCH
Confidence 369999999999999887764310000 11122222212222 45667788899777776653
No 423
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=25.66 E-value=5.8e+02 Score=25.02 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCChh-hhhccCCCCCCCCCCCHHHHHHH
Q psy1678 58 MGDVNEFKDFAKAMVDYVGNYLENIRD---RRVLPTVEPG-YLRPLIPETAPDTPDTWQEVMSD 117 (297)
Q Consensus 58 p~~~e~f~~~l~~v~d~i~~~~~~~~~---~pv~~~~~p~-~l~~~~~~~lP~~g~~~~~il~~ 117 (297)
..+.|+.+++.+++. .+++|++.+.+ ..|-|-..|. +....+.++.|..+.+.+++++.
T Consensus 404 eLSEEElEkl~~dLn-~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLsN 466 (477)
T PRK12821 404 DLDDAELEKLQVEFK-DITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLKN 466 (477)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHhc
Confidence 455666666655553 35666665533 3343333342 34456777888878888888765
No 424
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=25.44 E-value=57 Score=18.61 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.6
Q ss_pred eeCCCCCCcCHHHHHHHHHH
Q psy1678 267 LPADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 267 Vp~d~~~~md~~~L~~~i~~ 286 (297)
...|.+|.++.+.+...+++
T Consensus 9 ~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 9 FDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HSTTSSSEEEHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHh
Confidence 35688999999999988764
No 425
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.23 E-value=3.6e+02 Score=24.15 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678 111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKE 189 (297)
Q Consensus 111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~ 189 (297)
.+.+.++++....-+. .+-.||.+.... .....+..++..+-+.......+.-.+.... +.++||.++ |+
T Consensus 72 ~~~M~~di~~~~~~Ga----dGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~-~al~~l~~l-G~--- 142 (248)
T PRK11572 72 FAAMLEDIATVRELGF----PGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPL-NALKQLADL-GV--- 142 (248)
T ss_pred HHHHHHHHHHHHHcCC----CEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHH-HHHHHHHHc-CC---
Confidence 4455555555433232 245678776553 3445666676666443332222222222222 468888888 77
Q ss_pred ccccCCCCCCeEEcCChhHHHHHHHHHHHH
Q psy1678 190 FLACSGGKGGGVIQGTASEATLVALLGAKA 219 (297)
Q Consensus 190 ~~~~~~~~~~G~~tsGGT~anl~Al~~AR~ 219 (297)
..++||||..+...++-.-++
T Consensus 143 ---------~rILTSGg~~~a~~g~~~L~~ 163 (248)
T PRK11572 143 ---------ARILTSGQQQDAEQGLSLIME 163 (248)
T ss_pred ---------CEEECCCCCCCHHHHHHHHHH
Confidence 389999999876666665544
No 426
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=24.85 E-value=4.5e+02 Score=22.64 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=23.4
Q ss_pred ceEEEecCCCcchHHHHHHhcCCceEEeeCC
Q psy1678 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
+.+++++........+-.+.+|.+|+.++.+
T Consensus 75 ~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 75 KCTIVMPEGASPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 6688888887666666677789888887755
No 427
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=24.68 E-value=1.7e+02 Score=29.37 Aligned_cols=53 Identities=15% Similarity=0.342 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhhcch--hhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Q psy1678 28 AMVDYVGNYLENIRDRYV--QLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENI 82 (297)
Q Consensus 28 ~~vd~i~~y~~~~~~~~v--~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~ 82 (297)
.+|.|..+||.++++.-- ...|+|++.+ ....+-++++.+.++..+.+|..++
T Consensus 341 ~ii~f~~~y~~t~e~~f~f~~dev~~~l~d--~e~g~L~~~Yt~l~~~Kl~EWv~nl 395 (742)
T COG5173 341 AIIEFVGNYYNTIESKFNFIADEVGGRLLD--NETGELLEKYTKLAQEKLKEWVMNL 395 (742)
T ss_pred HHHHHHHHHHHHHHHhCCccHHHhcccccC--CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999997443 3789999855 3456778888888888888887765
No 428
>KOG2790|consensus
Probab=24.55 E-value=1.7e+02 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred ccCCCC-CCHHHHHHHHHHHhccccccc---cccCc---hhhHHHHHHHHHHHHHcCCCccc
Q psy1678 136 AYFPTA-NSYPAIVADILSDSIACIGFT---WIASP---ACTELEVVMLDWLGKMLDLPKEF 190 (297)
Q Consensus 136 g~~~s~-~~~~svl~d~l~~~lN~n~~~---~~~~p---~~~~iE~~v~~~l~~llg~~~~~ 190 (297)
+|-.+| ..+.+++-++-..++|-|+.. .+.|. -.+.|=.....-+.+|++.|+++
T Consensus 10 nFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~ 71 (370)
T KOG2790|consen 10 NFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNY 71 (370)
T ss_pred ecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCce
Confidence 333444 367799999999999987644 23332 23444456888999999999875
No 429
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=24.43 E-value=2.8e+02 Score=20.09 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=22.0
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy1678 5 IHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLEN 39 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~f~~~~~~~vd~i~~y~~~ 39 (297)
++-|+.|+ +-..+-++-+..|+++|.+|+.+
T Consensus 16 L~lAVen~----wGG~~s~~K~~~l~~~i~~~f~~ 46 (82)
T PF10273_consen 16 LQLAVENG----WGGPDSQEKADWLAEVIVDWFTE 46 (82)
T ss_pred HHHHHHhc----cCCccHHHHHHHHHHHHHHHHhc
Confidence 34455555 33334577889999999999988
No 430
>PLN03013 cysteine synthase
Probab=24.37 E-value=3.6e+02 Score=26.23 Aligned_cols=52 Identities=10% Similarity=-0.099 Sum_probs=39.1
Q ss_pred EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC
Q psy1678 201 VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 201 ~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
+-.|+|..+.=+|+.+++- .-+.+|++++.+.....+..+.+|.+|+.++.+
T Consensus 179 VeaSSGN~G~ALA~~a~~~------------------G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 179 VEPTSGNTGIGLAFIAASR------------------GYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred EEECCcHHHHHHHHHHHHc------------------CCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 4457888887777765431 136789999988888888889999999988654
No 431
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=23.43 E-value=42 Score=18.42 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.0
Q ss_pred eeCCCCCCcCHHHHHHH
Q psy1678 267 LPADDSYKLRGDALEAA 283 (297)
Q Consensus 267 Vp~d~~~~md~~~L~~~ 283 (297)
+.+|.+|.++.+++++.
T Consensus 8 ~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 8 FDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HTTTSSSEEEHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHH
Confidence 45788999999998874
No 432
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=23.34 E-value=2.1e+02 Score=22.74 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=33.6
Q ss_pred CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
.....+.+-|+-+|+...+|.. -|+++|+++|++..+.+ .|.+|
T Consensus 108 ~~~~d~~~~a~a~G~~~~~v~~-----~~~~el~~al~~a~~~~-gp~vI 151 (153)
T PF02775_consen 108 FPNPDFAALAEAFGIKGARVTT-----PDPEELEEALREALESG-GPAVI 151 (153)
T ss_dssp STTCGHHHHHHHTTSEEEEESC-----HSHHHHHHHHHHHHHSS-SEEEE
T ss_pred cccCCHHHHHHHcCCcEEEEcc-----CCHHHHHHHHHHHHhCC-CcEEE
Confidence 4557889999999998666532 26899999999998666 57654
No 433
>PRK08638 threonine dehydratase; Validated
Probab=23.08 E-value=5.6e+02 Score=23.70 Aligned_cols=51 Identities=20% Similarity=-0.117 Sum_probs=35.2
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEee
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLP 268 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp 268 (297)
.+-+|+|..+.-+|+.+++. | -+..|++++.....-.+..+.+|.+|+.++
T Consensus 78 vv~~SsGN~g~alA~~aa~~---------G---------~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~ 128 (333)
T PRK08638 78 VVACSAGNHAQGVALSCALL---------G---------IDGKVVMPKGAPKSKVAATCGYGAEVVLHG 128 (333)
T ss_pred EEEeCCcHHHHHHHHHHHHc---------C---------CCEEEEeCCCCcHHHHHHHHHcCCEEEEEC
Confidence 34446666666555555321 1 356889999888777778889999998875
No 434
>CHL00067 rps2 ribosomal protein S2
Probab=22.91 E-value=5.2e+02 Score=22.65 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCceEEEecCC-CcchHHHHHHhcCCc--------------eEEeeCCCCCCcCHHHHHHHHHHHHHCCC
Q psy1678 238 IANLVGYCSDQ-AHSSVERAGLLGGVT--------------IRGLPADDSYKLRGDALEAAIEEDLKKGK 292 (297)
Q Consensus 238 ~~~~~i~~s~~-aH~Si~Kaa~~lg~~--------------v~~Vp~d~~~~md~~~L~~~i~~~~~~G~ 292 (297)
.|+.++++... .|..+..|.. +|+- =..||++++..-.+.-+-..|.+....|.
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~-l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRK-LGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHH-cCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 46666665544 4555555554 4542 13688888887777777777777776664
No 435
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=22.82 E-value=3.2e+02 Score=20.25 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=34.0
Q ss_pred CceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEE
Q psy1678 239 ANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296 (297)
Q Consensus 239 ~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~ 296 (297)
.+++||+....+||. +|-++ .|+....|.+|.+ -+..++++.+.+....-.+|..
T Consensus 8 ~~Vvvysk~~Cp~C~-~ak~~L~~~~i~~~~vdid~~--~~~~~~~~~l~~~tg~~tvP~V 65 (99)
T TIGR02189 8 KAVVIFSRSSCCMCH-VVKRLLLTLGVNPAVHEIDKE--PAGKDIENALSRLGCSPAVPAV 65 (99)
T ss_pred CCEEEEECCCCHHHH-HHHHHHHHcCCCCEEEEcCCC--ccHHHHHHHHHHhcCCCCcCeE
Confidence 567888888888887 55555 4666667777642 2234556666654444456653
No 436
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.30 E-value=5.9e+02 Score=23.07 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA 249 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a 249 (297)
..++. .+.-+++-+|..-.--......--++|.||+ -+||.||.-+... | ....+++++.|.
T Consensus 64 ~~L~~-~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~-gsnl~al~~~~~~--------~------~~~~~i~~visn-- 125 (286)
T PRK06027 64 ETLRA-DFAALAEEFEMDWRLLDSAERKRVVILVSKE-DHCLGDLLWRWRS--------G------ELPVEIAAVISN-- 125 (286)
T ss_pred HHHHH-HHHHHHHHhCCEEEEcccccCcEEEEEEcCC-CCCHHHHHHHHHc--------C------CCCcEEEEEEEc--
Confidence 45554 4567777777643211111122346777765 7899999976432 1 112456666674
Q ss_pred cchHHHHHHhcCCceEEeeCCC
Q psy1678 250 HSSVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 250 H~Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
|..+..-|+-.|+.+..++..+
T Consensus 126 ~~~~~~lA~~~gIp~~~~~~~~ 147 (286)
T PRK06027 126 HDDLRSLVERFGIPFHHVPVTK 147 (286)
T ss_pred ChhHHHHHHHhCCCEEEeccCc
Confidence 4456666777899988887764
No 437
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=22.27 E-value=1.3e+02 Score=27.88 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=34.4
Q ss_pred CceEEEecCCCcchH---------HHHHHhcCCceEEeeC------CCCCCcCHH---HHHHHHHHHHHCCCcc
Q psy1678 239 ANLVGYCSDQAHSSV---------ERAGLLGGVTIRGLPA------DDSYKLRGD---ALEAAIEEDLKKGKIP 294 (297)
Q Consensus 239 ~~~~i~~s~~aH~Si---------~Kaa~~lg~~v~~Vp~------d~~~~md~~---~L~~~i~~~~~~G~~P 294 (297)
.++.++.|.+-||+- -+-++-+|++.+.+++ -..|+.|-+ +|.+.|+-+.++|+..
T Consensus 6 g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~v 79 (319)
T PF01301_consen 6 GKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYV 79 (319)
T ss_dssp TEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EE
T ss_pred CEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEE
Confidence 456677788899873 2334557999999987 245777766 7899999999999753
No 438
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.22 E-value=3.9e+02 Score=24.12 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=38.5
Q ss_pred CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC---CcchHHHHHHhcCCceEEeeCCC
Q psy1678 199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ---AHSSVERAGLLGGVTIRGLPADD 271 (297)
Q Consensus 199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~---aH~Si~Kaa~~lg~~v~~Vp~d~ 271 (297)
-++|.| |+.+||.+|+-+... | ....+++++.|.. ....+.+-|.-.|+.+..+|..+
T Consensus 73 iavlvS-g~g~nl~~ll~~~~~--------g------~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~ 133 (268)
T PLN02828 73 IAVLAS-KQDHCLIDLLHRWQD--------G------RLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTK 133 (268)
T ss_pred EEEEEc-CCChhHHHHHHhhhc--------C------CCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCC
Confidence 366665 456799999876332 1 1124667777754 33467777888899998888754
No 439
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.06 E-value=59 Score=19.86 Aligned_cols=12 Identities=17% Similarity=0.780 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhh
Q psy1678 31 DYVGNYLENIRD 42 (297)
Q Consensus 31 d~i~~y~~~~~~ 42 (297)
-||..|+++|++
T Consensus 7 ~fieryfddiqk 18 (40)
T PF13124_consen 7 AFIERYFDDIQK 18 (40)
T ss_pred HHHHHHHHHHHH
Confidence 478888888875
No 440
>PRK08576 hypothetical protein; Provisional
Probab=22.01 E-value=6.8e+02 Score=24.39 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678 169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~ 248 (297)
...+|+.+.+++.+.-+. ...+..|||-.|..++.++.+.. +++.++..++
T Consensus 218 le~~e~~~~~~Lr~~~~~-----------rVvVafSGGKDStvLL~La~k~~------------------~~V~aV~iDT 268 (438)
T PRK08576 218 LEAFEKASIKFLRKFEEW-----------TVIVPWSGGKDSTAALLLAKKAF------------------GDVTAVYVDT 268 (438)
T ss_pred HHHHHHHHHHHHHHcCCC-----------CEEEEEcChHHHHHHHHHHHHhC------------------CCCEEEEeCC
Confidence 456777777777764322 14777899999998776554321 1233444444
Q ss_pred Ccc------hHHHHHHhcCCceEE
Q psy1678 249 AHS------SVERAGLLGGVTIRG 266 (297)
Q Consensus 249 aH~------Si~Kaa~~lg~~v~~ 266 (297)
.+- -+.+.|+-+|+.++.
T Consensus 269 G~e~pet~e~~~~lae~LGI~lii 292 (438)
T PRK08576 269 GYEMPLTDEYVEKVAEKLGVDLIR 292 (438)
T ss_pred CCCChHHHHHHHHHHHHcCCCEEE
Confidence 431 355666778988776
No 441
>KOG2423|consensus
Probab=21.94 E-value=79 Score=30.50 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 271 DSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 271 ~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
+-|.-|.....++|-.|-.+|++||||
T Consensus 431 KGGEPd~~~vsKmvLnDwqRGkiP~FV 457 (572)
T KOG2423|consen 431 KGGEPDLVVVSKMVLNDWQRGKIPFFV 457 (572)
T ss_pred cCCCCchhHHHHHHhhHhhcCCCceec
Confidence 457788999999999999999999997
No 442
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=21.74 E-value=4.6e+02 Score=24.06 Aligned_cols=56 Identities=5% Similarity=-0.045 Sum_probs=35.7
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc------hHHHHHHhcCCceEEeeC
Q psy1678 200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS------SVERAGLLGGVTIRGLPA 269 (297)
Q Consensus 200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~------Si~Kaa~~lg~~v~~Vp~ 269 (297)
.+..|||-.|..+.-++ +....+ + ..++.++.-++.|- -+++.+.-+|++++.+..
T Consensus 23 vv~~SGGKDS~VlLhLa-~kaf~~-----~--------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~ 84 (294)
T TIGR02039 23 VMLYSIGKDSSVLLHLA-RKAFYP-----G--------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSN 84 (294)
T ss_pred EEEEecChHHHHHHHHH-HHHhcc-----c--------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 67789999998765544 332211 0 13456667788874 456677778987776544
No 443
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=21.66 E-value=4.6e+02 Score=24.07 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678 169 CTELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD 247 (297)
Q Consensus 169 ~~~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 247 (297)
...+|.+.+.-|.+.+. ++. -.+..|||-.|.++.-++.+ ...+ . ..++.++..+
T Consensus 9 L~~le~esi~iLrea~~~f~~----------~vv~~SGGKDS~VLL~La~k-a~~~-----~--------~~~~~vl~iD 64 (301)
T PRK05253 9 LDQLEAESIHILREVAAEFEN----------PVMLYSIGKDSSVMLHLARK-AFYP-----G--------KLPFPLLHVD 64 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCC----------EEEEecCCHHHHHHHHHHHH-hhcc-----c--------CCCeeEEEEe
Confidence 35677777766655554 222 37788999999987766533 2111 0 1234455566
Q ss_pred CCcc------hHHHHHHhcCCceEEeeC
Q psy1678 248 QAHS------SVERAGLLGGVTIRGLPA 269 (297)
Q Consensus 248 ~aH~------Si~Kaa~~lg~~v~~Vp~ 269 (297)
+.|- -+++-+.-+|++++.+..
T Consensus 65 TG~~FpEt~ef~d~~a~~~gl~l~v~~~ 92 (301)
T PRK05253 65 TGWKFPEMIEFRDRRAKELGLELIVHSN 92 (301)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6663 234555667988776543
No 444
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=21.44 E-value=4.8e+02 Score=23.16 Aligned_cols=52 Identities=10% Similarity=-0.084 Sum_probs=42.6
Q ss_pred EecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEE
Q psy1678 244 YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~ 296 (297)
......++.+-+.+...|+..+.|.. +++-+|.+.|...|......|..|+.
T Consensus 16 ~~~~~~sp~~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~~g~~~~V 67 (249)
T TIGR03239 16 CWSALGNPITTEVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKGSASAPVV 67 (249)
T ss_pred EEEcCCCcHHHHHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 34567888898888888988887755 46899999999999999888977763
No 445
>PRK01310 hypothetical protein; Validated
Probab=21.32 E-value=88 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
|.=-..=++++++|++.||.|.+ .--+.+|.|
T Consensus 48 Pv~GkAN~ali~~LA~~l~v~ks---------~I~iv~G~t 79 (104)
T PRK01310 48 PEGGEANRALIELLAKALGVPKS---------SVRLLSGAT 79 (104)
T ss_pred CCCChHHHHHHHHHHHHhCCChh---------hEEEEecCC
Confidence 33345566899999999999985 456666655
No 446
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.24 E-value=2.2e+02 Score=19.36 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=27.2
Q ss_pred HHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCc
Q psy1678 150 DILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPK 188 (297)
Q Consensus 150 d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~ 188 (297)
+.+..+.+.. .-...-.|..+..|+.++-.+|+-+|+..
T Consensus 6 ~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 6 QIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3444455443 22334455589999999999999999975
No 447
>KOG1402|consensus
Probab=21.15 E-value=2.5e+02 Score=26.55 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.1
Q ss_pred HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678 178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223 (297)
Q Consensus 178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~ 223 (297)
+.+..|+|++.- +=+..|.|++=+|+++||.|...
T Consensus 108 ~~vt~lf~~~kv-----------lpmnTGaEa~Eta~KLaR~wgy~ 142 (427)
T KOG1402|consen 108 EYVTKLFGYDKV-----------LPMNTGAEAVETACKLARKWGYR 142 (427)
T ss_pred HHHHHhcCccee-----------eecccchhHHHHHHHHHHHHHHh
Confidence 367899999752 22556799999999999988654
No 448
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=20.79 E-value=71 Score=18.07 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=15.9
Q ss_pred eCCCCCCcCHHHHHHHHHH
Q psy1678 268 PADDSYKLRGDALEAAIEE 286 (297)
Q Consensus 268 p~d~~~~md~~~L~~~i~~ 286 (297)
..|.+|.|+.++|.+.++.
T Consensus 10 D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 10 DKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp -TTSSSEEEHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHH
Confidence 4678999999999999874
No 449
>PRK08198 threonine dehydratase; Provisional
Probab=20.77 E-value=7.2e+02 Score=23.48 Aligned_cols=30 Identities=13% Similarity=-0.117 Sum_probs=23.3
Q ss_pred ceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPA 269 (297)
Q Consensus 240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~ 269 (297)
+.+||+++.+-..-....+.+|.+|+.++.
T Consensus 95 ~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~ 124 (404)
T PRK08198 95 KATIVMPETAPLSKVKATRSYGAEVVLHGD 124 (404)
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEECC
Confidence 578899988765656677889999988863
No 450
>PRK11761 cysM cysteine synthase B; Provisional
Probab=20.68 E-value=6.3e+02 Score=22.81 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=37.3
Q ss_pred EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC
Q psy1678 201 VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD 270 (297)
Q Consensus 201 ~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d 270 (297)
+-.|+|..+.-+|..+++. | -+..|++++..-....+..+.+|.+|+.++.+
T Consensus 67 v~aSsGN~g~alA~~a~~~---------G---------~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~ 118 (296)
T PRK11761 67 IEATSGNTGIALAMIAAIK---------G---------YRMKLIMPENMSQERRAAMRAYGAELILVPKE 118 (296)
T ss_pred EEeCCChHHHHHHHHHHHc---------C---------CCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3347777777666655421 1 36788999887777777888899999999853
No 451
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=20.59 E-value=1.9e+02 Score=23.98 Aligned_cols=24 Identities=8% Similarity=-0.122 Sum_probs=16.0
Q ss_pred hhhhhccc--cCCCCCCChHHHHHHH
Q psy1678 45 VQLQRFSQ--MGSNIMGDVNEFKDFA 68 (297)
Q Consensus 45 v~~~v~p~--l~~~~p~~~e~f~~~l 68 (297)
..|.++|+ ||....++.++++.+.
T Consensus 116 ~hp~~k~~~~mP~~~~LsdeEL~avA 141 (159)
T TIGR03045 116 LHPSIRSADIFPKMRNLTDEDLRLIA 141 (159)
T ss_pred cccccCcccccCCcCCCCHHHHHHHH
Confidence 34667775 8887778877765443
No 452
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.48 E-value=4.9e+02 Score=23.18 Aligned_cols=52 Identities=12% Similarity=-0.036 Sum_probs=42.2
Q ss_pred EecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEE
Q psy1678 244 YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296 (297)
Q Consensus 244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~ 296 (297)
......++.+-+.+...|+..+.|.. +++.+|.+.|...|......|..|+.
T Consensus 23 ~~~~~~sp~~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~~g~~~lV 74 (256)
T PRK10558 23 CWSALANPITTEVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKGSASAPVV 74 (256)
T ss_pred EEEcCCCcHHHHHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhhcCCCcEE
Confidence 33467888888888888998887755 46899999999999999888877763
No 453
>KOG0633|consensus
Probab=20.37 E-value=78 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.1
Q ss_pred CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678 249 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287 (297)
Q Consensus 249 aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~ 287 (297)
+-|++. |.+=++.|++||.+.++.|++++..+.++.+
T Consensus 122 sMY~v~--A~iNd~eVvkvpl~pdF~lnvdai~evl~~d 158 (375)
T KOG0633|consen 122 SMYVVD--AAINDAEVVKVPLNPDFSLNVDAIAEVLELD 158 (375)
T ss_pred eeEEEE--eecCCceEEEecCCCCccccHHHHHHHHhcc
Confidence 344443 3456789999999999999999998888765
No 454
>PRK05090 hypothetical protein; Validated
Probab=20.29 E-value=95 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678 170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS 207 (297)
Q Consensus 170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT 207 (297)
-..=++++++|++.||.|.+ .-.+.+|.|
T Consensus 45 GkAN~ali~~LAk~l~v~ks---------~I~i~~G~t 73 (95)
T PRK05090 45 GQANAHLLKFLAKQFRVAKS---------QVVIEKGEL 73 (95)
T ss_pred ChHHHHHHHHHHHHhCCChh---------hEEEEecCC
Confidence 34556899999999999985 577777766
No 455
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=20.23 E-value=2.8e+02 Score=18.64 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=28.4
Q ss_pred EEEecCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678 242 VGYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297 (297)
Q Consensus 242 ~i~~s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v 297 (297)
.+|....+.+|. .-++...|+....+.+|.... .+. +.+.--.|.+|.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~--~~~----~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK--PAE----MLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC--CHH----HHHHCCCCCCCEEE
Confidence 567776677776 345566788766666664221 122 22233457788763
Done!