RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1678
(297 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 287 bits (736), Expect = 5e-96
Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 7/205 (3%)
Query: 93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADIL 152
PGYLRPL+PE AP P+ +++ DI + IMPGVT WHSP FHAYFP NSYP+++ D+L
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 153 SDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV 212
SD+I C GFTW +SPACTELE V++DWL KML LPKEFL GGGV+QG +SE+ L+
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGE--GGGVLQGGSSESNLL 118
Query: 213 ALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS 272
ALL A+ K ++R+K A + LV Y SDQAHSS+E+A L+ GV +R +P D++
Sbjct: 119 ALLAARTKWIRRMKAAGKPS-----LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDEN 173
Query: 273 YKLRGDALEAAIEEDLKKGKIPFYI 297
K+RG LE AIEED + G IPF++
Sbjct: 174 GKMRGMDLEKAIEEDKENGLIPFFV 198
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 240 bits (613), Expect = 3e-76
Identities = 103/243 (42%), Positives = 157/243 (64%), Gaps = 15/243 (6%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
D + ++ MVD++ +Y ++I + VL V+PGYLR L+P++AP+ P+T +V+ D++
Sbjct: 11 DAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQ 70
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
I+PGVTHW SP + AY+P+ +S + ++LS + +GF+WI SPA TELE+++LDW
Sbjct: 71 AKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDW 130
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
L K+L+LP++FL S G GGGVIQGTASEA LV LL A+ + +++V + + +
Sbjct: 131 LAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK--------NALE 180
Query: 240 NLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIP 294
LV Y SDQ HS++++A + G+ R L D S Y L + L AI DL G IP
Sbjct: 181 KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIP 240
Query: 295 FYI 297
F++
Sbjct: 241 FFL 243
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 212 bits (541), Expect = 5e-65
Identities = 102/236 (43%), Positives = 154/236 (65%), Gaps = 19/236 (8%)
Query: 71 MVDYVGNYLENIRDRR----VLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGV 126
MVD++ +Y +N++D VL V+PGYLR ++P++AP+ P++ +E++ D+ + IMPG+
Sbjct: 66 MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGI 125
Query: 127 THWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDL 186
THW SP + AY+ ++ S + ++L+ ++ +GFTW+ SPA TELE+++LDWL K+L L
Sbjct: 126 THWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQL 185
Query: 187 PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246
P FL S G GGGVIQGT EA LV +L A+ + +++V + ++ LV Y S
Sbjct: 186 PDHFL--STGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT--------LLPQLVVYGS 235
Query: 247 DQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPFYI 297
DQ HSS +A L+GG+ IR L D S Y + ++LE AI DL KG IPF+I
Sbjct: 236 DQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFI 291
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 158 bits (403), Expect = 2e-46
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 134 FHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLAC 193
F A F T PA++ ++L+ + I FTW SPA TE+E +++WL K+ LP E
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE---- 56
Query: 194 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253
GV SE+ L+ALL A+ + +R+K I LV CSDQAH SV
Sbjct: 57 ---DADGVFTSGGSESNLLALLAARDRARKRLKAGGGR-----GIDKLVIVCSDQAHVSV 108
Query: 254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
E+A V +R +P D+ ++ +ALEAAI+ED +G P +
Sbjct: 109 EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMV 152
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 90.5 bits (225), Expect = 2e-20
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 78 YLENIRDRRVLPTVEPGYLRPLIPETAPD--TPDTWQEVMSDIER-VIMPGVTHWHSPKF 134
R ++ P + AP+ P +EV+ ++ +I + P+
Sbjct: 7 KDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPL--EEVLDELAELLIKDELYLDGHPRA 64
Query: 135 HAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACS 194
+ P + A++L ++ SPA ELE +++ L +L P+E
Sbjct: 65 NLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS--- 121
Query: 195 GGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL-VGYCSDQAHSSV 253
G +EA L+ALL A+ + +R +S CS+ AH S
Sbjct: 122 -----GTFTSGGTEANLLALLAARERWRKR------ALAESGKPGGKPNIVCSETAHFSF 170
Query: 254 ERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDLKKGKI 293
E+A G+ +R +P Y++ DALE AI+E+ G +
Sbjct: 171 EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 37.9 bits (89), Expect = 0.004
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 167 PACTELEVVMLDWLGKMLDLPKEF-LACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225
P +LE ++ LG++L LP + SGG +EA + A+ A+
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPDAYGYITSGG----------TEANIQAVRAAR----NLA 100
Query: 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285
K P+ I+ + AH S ++A + GV +R P DD Y++ A+E I+
Sbjct: 101 KAEKPN-----IVV------PESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID 149
Query: 286 ED 287
++
Sbjct: 150 DN 151
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 31.6 bits (72), Expect = 0.44
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226
P ++E ++ LG +L LP G I +EA + A+ AK
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPD---------AYGYIVSGGTEANIQAVRAAK-------N 98
Query: 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286
A + + +II + AH S E+A + G+ +R P D+ Y + +E I++
Sbjct: 99 LAREEKRTPNIIV------PESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins.
Myosin IX is a processive single-headed motor, which
might play a role in signalling. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport.
The head domain is a molecular motor, which utilizes
ATP hydrolysis to generate directed movement toward the
plus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long
and generates 1-5 piconewtons of force. Upon ATP
binding, the myosin head dissociates from an actin
filament. ATP hydrolysis causes the head to pivot and
associate with a new actin subunit. The release of Pi
causes the head to pivot and move the filament (power
stroke). Release of ADP completes the cycle.
Length = 692
Score = 29.9 bits (67), Expect = 1.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 34 GNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEP 93
G L+N+R R++Q ++ GS I+ VN FK YV Y +++ L + P
Sbjct: 21 GTLLKNLRHRFLQGHIYTYAGS-ILVAVNPFKFLPIYNPKYVRLY----ENQQRLGKLPP 75
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 56 NIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVM 115
+ + + +F + + D Y E+ R P VEP P P E+
Sbjct: 2 SFLDKLKKFFGYF-PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPAR-MEMR 59
Query: 116 SDIERVIMPGVT 127
++ V MP V
Sbjct: 60 GNV--VNMPRVA 69
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 29.8 bits (68), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 151 ILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDL-PKEF 190
ILSD++ F SP TEL+ +WL ++ + P+EF
Sbjct: 382 ILSDTL---LFK---SPTTTELDREAAEWLAEIAGIDPEEF 416
>gnl|CDD|238510 cd01040, globin, Globins are heme proteins, which bind and
transport oxygen. This family summarizes a diverse set
of homologous protein domains, including: (1) tetrameric
vertebrate hemoglobins, which are the major protein
component of erythrocytes and transport oxygen in the
bloodstream, (2) microorganismal flavohemoglobins, which
are linked to C-terminal FAD-dependend reductase
domains, (3) homodimeric bacterial hemoglobins, such as
from Vitreoscilla, (4) plant leghemoglobins (symbiotic
hemoglobins, involved in nitrogen metabolism in plant
rhizomes), (5) plant non-symbiotic hexacoordinate
globins and hexacoordinate globins from bacteria and
animals, such as neuroglobin, (6) invertebrate
hemoglobins, which may occur in tandem-repeat
arrangements, and (7) monomeric myoglobins found in
animal muscle tissue.
Length = 140
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 7 KKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYV---QLQRFSQMGSNIMGDVNE 63
+ S + +FK K +++ + ++N+ D L + + + D
Sbjct: 42 SRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNLDDLEALKALLAKLGRKHAKRGVDPEH 101
Query: 64 FKDFAKAMVDYVGNYL 79
FK F +A+++ + L
Sbjct: 102 FKLFGEALLEVLAEVL 117
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 28.1 bits (63), Expect = 6.2
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 194 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG-----YCSDQ 248
G G + GT+ A VA GA A +K+AHPDW + I A L+ Y SD
Sbjct: 224 GSGTGYARMSGTSMAAPHVA--GAAA----LLKQAHPDWSPAQIKAALMNTAKPLYDSDG 277
Query: 249 AHSSVERAG 257
V R G
Sbjct: 278 VVYPVSRQG 286
>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase.
This family consists of examples of
ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme
involved in biosynthesis of the inner core of
lipopolysaccharide (LPS) for Gram-negative bacteria.
This enzyme is homologous to UDP-glucose 4-epimerase
(TIGR01179) and belongs to the NAD dependent
epimerase/dehydratase family (pfam01370) [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 314
Score = 28.0 bits (63), Expect = 6.7
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 14/70 (20%)
Query: 22 FKDFAKAMVDYVG-----NYLEN---IRDRYVQLQRFSQMGSNIM---GDVNEFKDFAKA 70
F D A A+ +G Y+ +R RY Q F+Q + G F +
Sbjct: 248 FNDLADAVFKALGKDEKIEYIPMPEALRGRY---QYFTQADITKLRAAGYYGPFTTLEEG 304
Query: 71 MVDYVGNYLE 80
+ DYV L
Sbjct: 305 VKDYVQWLLA 314
>gnl|CDD|239758 cd04091, mtEFG1_II_like, mtEFG1_C: C-terminus of mitochondrial
Elongation factor G1 (mtEFG1)-like proteins found in
eukaryotes. Eukaryotic cells harbor 2 protein
synthesis systems: one localized in the cytoplasm, the
other in the mitochondria. Most factors regulating
mitochondrial protein synthesis are encoded by nuclear
genes, translated in the cytoplasm, and then
transported to the mitochondria. The eukaryotic system
of elongation factor (EF) components is more complex
than that in prokaryotes, with both cytoplasmic and
mitochondrial elongation factors and multiple isoforms
being expressed in certain species. Eukaryotic EF-2
operates in the cytosolic protein synthesis machinery
of eukaryotes, EF-Gs in protein synthesis in bacteria.
Eukaryotic mtEFG1 proteins show significant homology to
bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired
mitochondrial protein synthesis, respiratory defects
and a tendency to lose mitochondrial DNA. There are two
forms of mtEFG present in mammals (designated mtEFG1s
and mtEFG2s) mtEFG2s are not present in this group.
Length = 81
Score = 26.1 bits (58), Expect = 6.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 34 GNYLENIR-DRYVQLQRFSQMGSNIMGDVNE 63
G+ + N+R + V++ R +M SN M +V E
Sbjct: 29 GDTIYNVRTGKKVRVPRLVRMHSNEMEEVEE 59
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 28.1 bits (63), Expect = 6.9
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 96 LRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHW 129
L+ P P D WQ+ D++ +++ +HW
Sbjct: 174 LQDQFPTEIPKIHDAWQD--GDLQVILLEDRSHW 205
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 27.9 bits (62), Expect = 7.2
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHP 230
+ EV +LDW ++ +L K+ + G I +E L +L +E P
Sbjct: 66 QFEVGVLDWFARLWELEKD-------EYWGYITTCGTEGNLHGILVG--------REVFP 110
Query: 231 DWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 290
D + Y S ++H SV +A + + +P S ++ D LE A+ ++ K
Sbjct: 111 DG---------ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDK 161
Query: 291 GKI 293
I
Sbjct: 162 PAI 164
>gnl|CDD|191183 pfam05066, RNA_pol_delta, DNA-directed RNA polymerase delta
subunit. The delta protein is a dispensable subunit of
Bacillus subtilis RNA polymerase (RNAP) that has major
effects on the biochemical properties of the purified
enzyme. In the presence of delta, RNAP displays an
increased specificity of transcription, a decreased
affinity for nucleic acids, and an increased efficiency
of RNA synthesis because of enhanced recycling. The
delta protein, contains two distinct regions, an
N-terminal domain and a glutamate and aspartate
residue-rich carboxyl-terminal region.
Length = 91
Score = 26.1 bits (58), Expect = 8.3
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 22 FKDFAKAMVDYVGNYLENIRDRYVQLQ-------RFSQMGSNIMG 59
F D + +G E IR+R Q RF +G N G
Sbjct: 32 FDDLVNEIQKLLGISDEEIRERLAQFYTDLNIDGRFISLGENEWG 76
>gnl|CDD|218099 pfam04465, DUF499, Protein of unknown function (DUF499). Family of
uncharacterized hypothetical prokaryotic proteins.
Length = 1025
Score = 27.9 bits (62), Expect = 9.3
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 14 IIMGDVNE-FKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMV 72
+M ++ E + + K +V+ + +E+IRDR + + I V F+ A +
Sbjct: 553 EVMDEIKEAYGKYGKDVVNIQKSMVEDIRDRA-----LEDLENQI---VRSFRKVAYPVK 604
Query: 73 DYVGNYLENIRDRRVLPTVE 92
D V + V+ V
Sbjct: 605 DGVEEVDAPASSKSVVENVY 624
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 27.6 bits (61), Expect = 10.0
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 16 MGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGD-VNEFKDFAKAMVDY 74
G+ + FK K + VG D+ V++ + + +M + K K
Sbjct: 793 TGNNDRFKKGIKDIFSKVGTIAAANADKAVKIWKDLKPEQKVMIANWDTIKANFKKQFSG 852
Query: 75 VGNYLENIRDRRVLPTVE-PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSP 132
VG+ L V + + +I E D +T+ I++VI G+
Sbjct: 853 VGDSLTPSMKTLVKDNSDVLNASKGMIVEENVDLKNTFAGATPVIQQVINKGIARQLRD 911
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,866,847
Number of extensions: 1550782
Number of successful extensions: 1621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 36
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)