RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1678
(297 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 324 bits (833), Expect = e-109
Identities = 139/238 (58%), Positives = 183/238 (76%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
+ ++F+ K MVDY+ +YLE I R+V P V+PGYLRPLIP TAP PDT+++++ D+E
Sbjct: 2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
LGKML LP+ FLA G+GGGVIQG+ASEATLVALL A+ K ++R++ A P ++
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
LV Y SDQAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 321 bits (825), Expect = e-108
Identities = 178/238 (74%), Positives = 208/238 (87%), Gaps = 1/238 (0%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
+ EFKDFAK MVD++ YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIE
Sbjct: 2 EAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
RVIMPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DW
Sbjct: 62 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
LGKML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W + I+
Sbjct: 122 LGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
LVGYCSDQAHSSVERAGLLGGV +R + +++++RG ALE AIE+D+ +G IPFY
Sbjct: 182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYA 238
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 320 bits (823), Expect = e-108
Identities = 122/239 (51%), Positives = 174/239 (72%), Gaps = 1/239 (0%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
+ E+++ + MVDY+ YL +R+RRV P V+PGYLR +PE+AP+ PD+W + DIE
Sbjct: 7 EPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIE 66
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
R+IMPGV HW SP HAY+P S+P+++ D+L+D+I C+GFTW +SPACTELE+ ++DW
Sbjct: 67 RIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDW 126
Query: 180 LGKMLDLPKEFLAC-SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII 238
L KML LP+ FL +GGGV+Q T SE+TL+ALL A+ + +K + PD +S +
Sbjct: 127 LAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN 186
Query: 239 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
A LV Y SDQAHSSVE+AGL+ V ++ LP DD++ LRG+AL+ AIEED ++G +P ++
Sbjct: 187 ARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 292 bits (750), Expect = 1e-96
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 21/246 (8%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEV 114
+ F +VD + NY+ DR +VL P L + D P++ +++
Sbjct: 17 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76
Query: 115 MSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEV 174
+ D + GV H P+F T + + L+ + FT+ +P +E
Sbjct: 77 LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQ 135
Query: 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKD 234
+ L + +++ G G+ + + + +++ A+ K VK
Sbjct: 136 ITLKKMREIVGWS-------SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM---- 184
Query: 235 SDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKG 291
+ LV + S+Q+H S+++AG G + + ++ K+ EA I E +KG
Sbjct: 185 -AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKG 243
Query: 292 KIPFYI 297
+PFY+
Sbjct: 244 YVPFYV 249
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 279 bits (716), Expect = 2e-91
Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 15/243 (6%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPE-TAPDTPDTWQEVMSDI 118
EF + + E + ++P L I + + V+ D+
Sbjct: 30 GSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDV 87
Query: 119 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLD 178
++ P A+ T PA+ A+ + ++ +W + + T +E +++
Sbjct: 88 AELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVN 147
Query: 179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDI 237
WL DL ++ G+ +++ + L+ A+ ++ D
Sbjct: 148 WLCDKYDLSEK--------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDY 199
Query: 238 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIP 294
L CS ++H +V+++ G+ + + A+ + L+ I + +G IP
Sbjct: 200 ADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIP 259
Query: 295 FYI 297
F I
Sbjct: 260 FAI 262
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 278 bits (713), Expect = 6e-91
Identities = 42/239 (17%), Positives = 93/239 (38%), Gaps = 19/239 (7%)
Query: 62 NEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERV 121
+ +VD ++ ++V EP L+ L+ ++ ++++ V
Sbjct: 41 ALLRAVFGVVVDEAIQKGTSVS-QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99
Query: 122 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 181
I V H P+F + A+ I+++S+ +T+ +P +E +L L
Sbjct: 100 IRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLR 158
Query: 182 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241
++ G G+ S + + A+ A+ + K+ + L
Sbjct: 159 ALVGWS---------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL-----RTLPPL 204
Query: 242 VGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
+ S + H S+++ G+ ++R + AD+ K+ + LE I +G +PF +
Sbjct: 205 ALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 71.5 bits (175), Expect = 4e-14
Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 22/225 (9%)
Query: 64 FKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIM 123
+ A D ++L ++R + ++P R P E++++I +
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQ-----IKPYRDRFPSHARLPRAGLPRAEILAEIAAMGA 90
Query: 124 PGVTHWHSPKFHAYFPTANSYP-AIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
W + + A + ++ + P+ + E ++
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
ML +GG G + +E+ L+A+ + P V
Sbjct: 151 MLGGDA-----AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP---------EAV 196
Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287
AH++ ++A G+ + P D Y+ A+ AI +
Sbjct: 197 --VPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 63.4 bits (154), Expect = 2e-11
Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 26/216 (12%)
Query: 75 VGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI-MPGVTHWHSPK 133
V ++I D ++ + P +P +V+ ++ ++ + T W K
Sbjct: 14 VTKVKQSIEDE-LIRSDSQLMNFPQLPSNGIP----QDDVIEELNKLNDLIPHTQWKEGK 68
Query: 134 FHAYFPTANSYPA-IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLA 192
+ PA ++E ++ + +M + P +
Sbjct: 69 VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD--- 125
Query: 193 CSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS 252
G G +E+ L+A L AK + P ++ AH+
Sbjct: 126 ----TGCGTTTSGGTESLLLACLSAKMYALHHRGITEP---------EII--APVTAHAG 170
Query: 253 VERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 287
++A G+ +R + D +Y++ ++ I ++
Sbjct: 171 FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 60.8 bits (148), Expect = 1e-10
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 20/184 (10%)
Query: 105 PDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWI 164
+ + +E++ ++++ + + I I+ +
Sbjct: 6 QEKGVSEKEILEELKKYRS-LDLKYEDGNIFGSMCSNV--LPITRKIVDIFLETNLGDPG 62
Query: 165 ASPACTELEVVMLDWLGKMLDLPKEFLA-CSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223
LE + LG +L+ + SGG +EA L+AL K +
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG----------TEANLMALRCIKNIWRE 112
Query: 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA 283
+ ++ + II AH S E+ + + P + Y + ++ A
Sbjct: 113 KRRKGLSKNEHPKII------VPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166
Query: 284 IEED 287
+E+
Sbjct: 167 VEDY 170
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 50.4 bits (120), Expect = 3e-07
Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 26/132 (19%)
Query: 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225
+ + + + L G + ++ ++ L A K
Sbjct: 125 ASGASIMYALTNKILESFFKQL-------GLNVHAIATPISTGMSISLCLSAARK----- 172
Query: 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEA 282
S+++ +H S +A G + + D + + +E
Sbjct: 173 ------KYGSNVV-----IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIEN 221
Query: 283 AIEEDLKKGKIP 294
AI+++++ G P
Sbjct: 222 AIKKEIELGNRP 233
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 8e-06
Identities = 50/302 (16%), Positives = 87/302 (28%), Gaps = 96/302 (31%)
Query: 34 GN---YLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPT 90
GN Y E +RD Y + ++ + L + R
Sbjct: 164 GNTDDYFEELRDLY-----------------QTYHVLVGDLIKFSAETLSELI--RTTLD 204
Query: 91 VEPGYLRPL-------IPETAPDTPDTWQEVMSDIERVIMP--GVTHWHSPKFHAYFPTA 141
E + + L P PD ++ + I + P GV + Y TA
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPD-----KDYLLSIP-ISCPLIGVI-----QLAHYVVTA 253
Query: 142 NSY---PAIVADILSDSIACI-----------GFTWIASPACTELEVVMLDWLGK----- 182
P + L + +W + + +L ++G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 183 --MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ-RVKE--AH-PDWKDSD 236
LP L S +G S ++++ + +Q V + +H P
Sbjct: 314 YPNTSLPPSILEDSLENN----EGVPS--PMLSISNLTQEQVQDYVNKTNSHLPA--GKQ 365
Query: 237 IIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDAL---EAAIEEDLKKGKI 293
+ +LV + V V+ G P L G L +A L + +I
Sbjct: 366 VEISLV--NGAKNL--V--------VS--GPPQS----LYGLNLTLRKAKAPSGLDQSRI 407
Query: 294 PF 295
PF
Sbjct: 408 PF 409
Score = 41.2 bits (96), Expect = 3e-04
Identities = 42/258 (16%), Positives = 74/258 (28%), Gaps = 104/258 (40%)
Query: 51 SQ---MGSNIMGDVNEFKD-FAKA---MVDYVG-NYLENIRDRRVLPTVEPG-----YLR 97
SQ MG ++ +D + +A D G + L+ + + V T+ G +R
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 98 ----PLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILS 153
+I ET D +++ +I T + S K T + PA+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYT-FRSEK-GLLSATQFTQPALTL---- 1738
Query: 154 DSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVA 213
A E + G+I A+ A
Sbjct: 1739 -----------MEKAAFE---DLKSK--------------------GLIPADATFA---- 1760
Query: 214 LLGAKAKTMQRVKEAHPDWKDSDIIANLVG-YCSDQAHSSVERAGLLGGVTIRGLPADDS 272
G H S +G Y A +S+ V + +
Sbjct: 1761 --G------------H-----S------LGEYA---ALASL------ADV----MSIESL 1782
Query: 273 YKL---RGDALEAAIEED 287
++ RG ++ A+ D
Sbjct: 1783 VEVVFYRGMTMQVAVPRD 1800
Score = 39.3 bits (91), Expect = 0.002
Identities = 38/233 (16%), Positives = 62/233 (26%), Gaps = 81/233 (34%)
Query: 39 NIRD-RYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVL--PTVEPGY 95
+I + Q+Q + + N K + + L N V+ P P
Sbjct: 340 SISNLTQEQVQDY-------VNKTNSHLPAGKQV--EIS--LVNGAKNLVVSGP---PQS 385
Query: 96 LRPLIPE----TAPDTPDTWQEVMSDIERVIMPG-----VTHWHSPKFH-AYFPTANSYP 145
L L AP D + S ER + V SP FH A+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVA---SP-FHSHLLVPAS--D 437
Query: 146 AIVADILSDSIACIG----------FTW---------IASPACTELEVVMLDW------- 179
I D++ ++++ F I+ + + + W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 180 --------------LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAK 218
LG + K+ G G VI + G K
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKD------GTGVRVIVAGTLDINPDDDYGFK 544
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 9e-05
Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 120/291 (41%)
Query: 33 VGNY------LENIRDRYVQL-----QRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLEN 81
+ N LE ++ Q+ R SNI ++ +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQA--------------- 232
Query: 82 IRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAY---- 137
RR+L Y L+ V+ ++ ++ ++A+
Sbjct: 233 -ELRRLL--KSKPYENCLL-------------VLLNV----------QNAKAWNAFNLSC 266
Query: 138 ---FPTANSYPAIVADILSDSIAC--------IGFTWIASPACTELEVVMLDWLG-KMLD 185
T V D LS + + T E++ ++L +L + D
Sbjct: 267 KILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLKYLDCRPQD 317
Query: 186 LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDIIANLVGY 244
LP+E + ++++ R A D WK +
Sbjct: 318 LPRE--VLTTN------------PRRLSIIAE----SIRDGLATWDNWKHVNC------- 352
Query: 245 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI-EEDLKKGKIP 294
D+ + +E ++ L + Y+ D L ++ IP
Sbjct: 353 --DKLTTIIE-------SSLNVLEPAE-YRKMFDRL--SVFPPSA---HIP 388
Score = 35.6 bits (81), Expect = 0.018
Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 52/196 (26%)
Query: 6 HKKIKNGSIIMGDV---NEFKDFA---KAMV---DY-VGNYLENIRDRYVQLQRFSQMGS 55
K +N +++ +V + F K ++ V ++L ++ L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-------- 291
Query: 56 NIMGDVNEFKDFAKA-MVDYVGNYLENIRDRRVLP----TVEPGYLRPLIPETAPDTPDT 110
+ + + YL+ LP T P L +I E+ D T
Sbjct: 292 -----DHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTNPRRLS-IIAESIRDGLAT 343
Query: 111 WQ---EVMSD-IERVIMPGVTHWHSPKFHAY------FPTANSYPAIVADILSDSIACIG 160
W V D + +I + ++ FP + P I+ ++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------- 395
Query: 161 FTWIASPACTELEVVM 176
W +++ VV+
Sbjct: 396 --WFDVIK-SDVMVVV 408
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 31.5 bits (72), Expect = 0.26
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 87 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSD 117
++ V GY P + + + P + +++D
Sbjct: 246 IIFMVGRGYASPDLSKLYKNCPKAMKRLVAD 276
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 30.7 bits (70), Expect = 0.56
Identities = 2/27 (7%), Positives = 7/27 (25%)
Query: 103 TAPDTPDTWQEVMSDIERVIMPGVTHW 129
+ + S+ + H+
Sbjct: 250 PYAPLIEFVPKYYSNYTMETIEDCGHF 276
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.82
Identities = 4/22 (18%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 84 DRRVLPTVEPGYLRPLIPETAP 105
+++ L ++ L+ ++AP
Sbjct: 18 EKQALKKLQ-ASLKLYADDSAP 38
Score = 27.2 bits (59), Expect = 4.1
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 35/63 (55%)
Query: 223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA 282
Q +K+ + A+L Y D A PA L A++A
Sbjct: 20 QALKK---------LQASLKLYADDSA------------------PA-----L---AIKA 44
Query: 283 AIE 285
+E
Sbjct: 45 TME 47
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 29.9 bits (67), Expect = 0.91
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 3 DQIHKKIKNGSIIMG---DVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQM-GSNIM 58
+ KI + G F A VD +L + +L R + +
Sbjct: 286 KMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRI 345
Query: 59 GDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLR 97
E K K +++ + + +++R L T E L
Sbjct: 346 MTG-EVK---KLLINTITAITKTHQEKRKLVTDEDVQLF 380
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 29.9 bits (68), Expect = 1.0
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 105 PDTPDTWQEVMSDIERVIMPGVTHW 129
+ + D+E ++PG HW
Sbjct: 250 TFQLEQMKAYAEDVEGHVLPGCGHW 274
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 29.2 bits (66), Expect = 1.3
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 87 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSD 117
++ V G L P + + + P + +M++
Sbjct: 234 IIEMVGRGSLSPDLSKVRSNCPKRMKRLMAE 264
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I
4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Length = 95
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 278 DALEAAIEEDLKKGKIPFYI 297
D + A EE K+G +P I
Sbjct: 60 DVISIAEEE-FKRGVLPITI 78
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 28.2 bits (63), Expect = 3.1
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 13/38 (34%)
Query: 103 TAPDTPDTWQEVMS----------DIERVIMPGVTHWH 130
TA T + D++ ++ +TH H
Sbjct: 38 TALGTRAARGALELHLAELGLCFQDVKTIL---LTHHH 72
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 28.4 bits (64), Expect = 3.4
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 258 LLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGK 292
GV I + S +++ ALE A +E K+
Sbjct: 154 WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL 190
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
DF + +G + D V+P +P P + SDIE
Sbjct: 262 VDDFQFIFLALTQLGQDPNAMTDCSDVIPLSKP----IPGNGPFSFFPPG--KSHSDIE 314
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
protoporphyrin IX, electron T lignin peroxidase, lignin
degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
2vka_A*
Length = 331
Score = 27.9 bits (62), Expect = 4.2
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPET 103
FA M +G + D V+PT +P
Sbjct: 255 QNRFAATMSKMALLGQDKTKLIDCSDVIPTPPALVGAAHLPAG 297
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP,
perox oxidoreductase; HET: NAG MAN HEM; 1.30A
{'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A*
1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A*
1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A*
1ly9_A* 1h3j_A* 1ly8_A*
Length = 344
Score = 28.0 bits (62), Expect = 4.6
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPET 103
+ + AM +G + D V+P+ P+IP
Sbjct: 270 GQRYRAAMAKMSVLGFDRNALTDCSDVIPSAVSNNAAPVIPGG 312
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 4.7
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 36/140 (25%)
Query: 46 QLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL--------R 97
+ + + + ++ E + KA+ E + +V+ R
Sbjct: 733 FVPELKEFTAKLRKELVETSEVRKAVSI------ETALEHKVVNGNSADAAYAQVEIQPR 786
Query: 98 PLIPETAPDTPD---------TWQEVMSDIERVI----MPGVTHWHSPKFHAYFPTANSY 144
I P+ E + D+ERVI V W S + +
Sbjct: 787 ANIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTR--------W 838
Query: 145 PAIVADILSDSIACIGFTWI 164
S C+ WI
Sbjct: 839 EMEAFGEFSLE-GCVEMAWI 857
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 27.6 bits (61), Expect = 5.4
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
+F M +G + D V+PT + + P M+D++
Sbjct: 261 VNNFEAVMSRLAVIGQIPSELVDCSDVIPTPPLAKVAQ--VGSLPPGK-----SMADVQ 312
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 27.3 bits (61), Expect = 7.2
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 258 LLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK 292
GV + + + +++K+ A++ A E K
Sbjct: 151 WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI 187
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 26.9 bits (59), Expect = 8.8
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 12 GSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAM 71
S+ D FK+ A MVD + ++ N+ V + F+ +M +
Sbjct: 20 QSVSENDFLIFKESASLMVDRIFSFEINVS---VAIITFASEPKVLM----SVLNDNSRD 72
Query: 72 VDYVGNYLENI 82
+ V + LEN
Sbjct: 73 MTEVISSLENA 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,923,410
Number of extensions: 308336
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 50
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)