RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1678
(297 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 245 bits (626), Expect = 6e-79
Identities = 139/238 (58%), Positives = 183/238 (76%)
Query: 60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
+ ++F+ K MVDY+ +YLE I R+V P V+PGYLRPLIP TAP PDT+++++ D+E
Sbjct: 2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
LGKML LP+ FLA G+GGGVIQG+ASEATLVALL A+ K ++R++ A P ++
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
LV Y SDQAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 98.0 bits (243), Expect = 9e-24
Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 23/220 (10%)
Query: 69 KAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTH 128
K + D L++ + + T+ P +Q + ++ + G
Sbjct: 2 KQVTDLRSELLDSRFGAKSISTIAE---SKRFPLHEMRDDVAFQIINDEL---YLDGNAR 55
Query: 129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 188
+ F + V ++ SI P +++ ++ + + P
Sbjct: 56 QNLATFCQTW-----DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110
Query: 189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248
G+ G +SEA ++ + K + +R++ A +
Sbjct: 111 PK----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT-------DKPNLVCGP 159
Query: 249 AHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEED 287
+ V +R +P + + A +E+
Sbjct: 160 VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN 199
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 73.4 bits (179), Expect = 3e-15
Identities = 32/254 (12%), Positives = 75/254 (29%), Gaps = 48/254 (18%)
Query: 53 MGSNIMGDV-NEFKDFAKAMVDYVGNYLENIRDRRVLPT--VEPGYLRPLIPETAPDTPD 109
+ NI G + + + +++ +E++ + R +P ++ ++ + + D
Sbjct: 2 LDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTD 61
Query: 110 TWQEVMSDIE---RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS 166
+ + E R S H + N + D +
Sbjct: 62 KDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYA--- 113
Query: 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226
L +L+ K L G + ++ ++ L A K
Sbjct: 114 -----LTNKILESFFKQL----------GLNVHAIATPISTGMSISLCLSAARKKYGS-- 156
Query: 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAA 283
V +H S +A G + + D + + +E A
Sbjct: 157 --------------NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENA 202
Query: 284 IEEDLKKGKIPFYI 297
I+++++ G P +
Sbjct: 203 IKKEIELGNRPCVL 216
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 37.6 bits (86), Expect = 0.001
Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 26/172 (15%)
Query: 129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 188
+ + Y I S I+ + S ++ ++ + K+ +
Sbjct: 52 EREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHS 111
Query: 189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248
+ A+ +L + I
Sbjct: 112 V--------ASCFVVPMATGMSLTLCFLT----------LRHKRPKAKYI-----IWPRI 148
Query: 249 AHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
S ++ + G V I + D + A+EA I+E + + +
Sbjct: 149 DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHS 200
>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 26.2 bits (57), Expect = 1.9
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 126 VTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLD 185
+ H SP H F + +L+ I A + V + + +
Sbjct: 11 IAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFA 70
Query: 186 L 186
Sbjct: 71 R 71
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 27.3 bits (60), Expect = 2.3
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLI 100
F AM +G+ ++ D V+P +P +P +
Sbjct: 266 AASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAM 305
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 26.9 bits (59), Expect = 2.7
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 64 FKDFAKAMVDYVGNYLENIRDR----RVLPTVEPGYLRPLIPET 103
+ + AM + + V+P+ P+IP
Sbjct: 262 GQRYRAAMAK-MSVLGFDRNALTDCSDVIPSAVSNNAAPVIPGG 304
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga
maritima [TaxId: 2336]}
Length = 134
Score = 26.1 bits (57), Expect = 3.1
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 109 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADI 151
+ + I P V HWH A + I +
Sbjct: 73 KPARILKKGDVVEIPPNVVHWHG----AAPDEELVHIGISTQV 111
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 26.5 bits (58), Expect = 3.8
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 64 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEP 93
DF + +G + D V+P +P
Sbjct: 262 VDDFQFIFLALTQLGQDPNAMTDCSDVIPLSKP 294
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.5 bits (58), Expect = 4.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 64 FKDFAKAMVDYVGNYLENIRDRRVLPTVEP 93
D K VD+V NY + V+PT P
Sbjct: 106 MADLEKETVDFVDNYDGTEKIPDVMPTKIP 135
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 25.3 bits (55), Expect = 4.3
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 221 TMQRVKEAHPDWKDSDIIA-NLVGYCSDQ---AHSSVERAG----LLGGVTIRGLPADDS 272
T + V E HPD K +D I+ ++ +Q A + E +L G I D
Sbjct: 6 TSESVSEGHPD-KIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDI 64
Query: 273 YKLRGDALEAAIEEDLKKG 291
++ + + G
Sbjct: 65 EEITRNTVREIGYVHSDMG 83
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 26.0 bits (56), Expect = 5.7
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 90 TVEPGYLRPLIPETAPD-TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIV 148
++ G + + A P +++ I+ + AI
Sbjct: 170 LLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIE 229
Query: 149 ADILSDSIACIGFTWIASPACTELEVVMLDWLG 181
A + A + TE ML+ G
Sbjct: 230 AGVDVVDTAISSMSLGPGHNPTESVAEMLEGTG 262
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 25.6 bits (55), Expect = 7.3
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 8/110 (7%)
Query: 12 GSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNI--------MGDVNE 63
+ + K F M++ + + +R V+ S + + +
Sbjct: 24 SRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIAS 83
Query: 64 FKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQE 113
+A + V L+ + P R + A P
Sbjct: 84 QVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSR 133
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 25.6 bits (55), Expect = 7.3
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 108 PDTWQEVMSDIERVIMPGVTHWHSPKFHAYFP-----TANSY 144
P W E + D + + + F A + + N+Y
Sbjct: 2 PKIWTERIFDDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAY 43
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 25.8 bits (55), Expect = 8.2
Identities = 26/194 (13%), Positives = 52/194 (26%), Gaps = 11/194 (5%)
Query: 54 GSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQE 113
G + D+ + N L + L T T +
Sbjct: 212 GEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271
Query: 114 VMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS--PACTE 171
+ + I V G P+ ++ + + + ++ + ++ T
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 172 LEVVMLDWLGKMLDL---PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA 228
V + G L ++ G + GT+ V+ G V
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVS--GVAT----LVWSY 385
Query: 229 HPDWKDSDIIANLV 242
HP+ S + A L
Sbjct: 386 HPECSASQVRAALN 399
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 25.2 bits (54), Expect = 8.9
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 196 GKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER 255
G G GT+ + VA GA A + HP+W ++ + ++L + S
Sbjct: 211 GNKYGAYNGTSMASPHVA--GAAA----LILSKHPNWTNTQVRSSLENTTTKLGDSFYYG 264
Query: 256 AGLL 259
GL+
Sbjct: 265 KGLI 268
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,391
Number of extensions: 57196
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 24
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)