BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16780
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 196 bits (498), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 13 LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
VL +L L NF G +Y+ Q+D +++W DV WL+TIT LPI++KG
Sbjct: 172 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 231
Query: 72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR G
Sbjct: 232 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
TDVFKALALGA VF+GRP ++ LA G++GV+KVL ++ +EF+ +ALSGC S+ EI R
Sbjct: 292 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 351
Query: 192 EMVVHE 197
+ +
Sbjct: 352 SHIAAD 357
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 196 bits (498), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 130/186 (69%), Gaps = 1/186 (0%)
Query: 13 LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
VL +L L NF G +Y+ Q+D +++W DV WL+TIT LPI++KG
Sbjct: 173 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 232
Query: 72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR G
Sbjct: 233 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 292
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
TDVFKALALGA VF+GRP ++ LA G++GV+KVL ++ +EF+ +ALSGC S+ EI R
Sbjct: 293 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 352
Query: 192 EMVVHE 197
+ +
Sbjct: 353 SHIAAD 358
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 196 bits (497), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 129/183 (70%), Gaps = 1/183 (0%)
Query: 13 LVLSQYL-LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKG 71
VL +L L NF G +Y+ Q+D +++W DV WL+TIT LPI++KG
Sbjct: 172 FVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKG 231
Query: 72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR G
Sbjct: 232 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291
Query: 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
TDVFKALALGA VF+GRP ++ LA G++GV+KVL ++ +EF+ +ALSGC S+ EI R
Sbjct: 292 TDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISR 351
Query: 192 EMV 194
+
Sbjct: 352 SHI 354
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
AY+ +D +I+W D+ WL+ +T LPIV KGIL +DA+ V+ G + I+VSNHG RQLD
Sbjct: 229 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 288
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
VPA+I+ LPEI +AV KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA G+
Sbjct: 289 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 348
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV+ VL+IL EF A+ALSGC +V I + +V
Sbjct: 349 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 382
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
AY+ +D +I+W D+ WL+ +T LPIV KGIL +DA+ V+ G + I+VSNHG RQLD
Sbjct: 207 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 266
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
VPA+I+ LPEI +AV KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA G+
Sbjct: 267 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 326
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV+ VL+IL EF A+ALSGC +V I + +V
Sbjct: 327 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 115/154 (74%)
Query: 41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD 100
AY+ +D +I+W D+ WL+ +T LPIV KGIL +DA+ V+ G + I+VSNHG RQLD
Sbjct: 224 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLD 283
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
VPA+I+ LPEI +AV KV+V+LDGGVR GTDV KALALGAK VFVGRP +WGLA G+
Sbjct: 284 GVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGE 343
Query: 161 SGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV+ VL+IL EF A+ALSGC +V I + +V
Sbjct: 344 KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 377
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 110/142 (77%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
W+D++ L++IT+LPI+LKGILT EDA++ ++ I+VSNHGGRQLD V ASI+AL E+
Sbjct: 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREV 265
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
AV K++VY+DGGVR GTDV KALALGA+ +F+GRP LWGLA G+ GV++VLDIL
Sbjct: 266 VAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTA 325
Query: 173 EFDQALALSGCTSVGEIQREMV 194
E + + LSGC SV EI +++
Sbjct: 326 ELHRCMTLSGCQSVAEISPDLI 347
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 110/142 (77%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
W+D++ L++IT+LPI+LKGILT EDA++ ++ I+VSNHGGRQLD V ASI+AL E+
Sbjct: 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREV 265
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
AV K++VY+DGGVR GTDV KALALGA+ +F+GRP LWGLA G+ GV++VLDIL
Sbjct: 266 VAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTA 325
Query: 173 EFDQALALSGCTSVGEIQREMV 194
E + + LSGC SV EI +++
Sbjct: 326 ELHRCMTLSGCQSVAEISPDLI 347
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 105/130 (80%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
W DV WL+TIT LPI++KG++TAEDA++ V+ GA+ I+VSNHG RQLDYVPA+I AL E+
Sbjct: 97 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEV 156
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
KA ++ V+LDGGVR GTDVFKALALGA VF+GRP ++ LA G++GV+KVL ++ +
Sbjct: 157 VKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRD 216
Query: 173 EFDQALALSG 182
EF+ +ALSG
Sbjct: 217 EFELTMALSG 226
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 225 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 284
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 285 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 344
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 345 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 377
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 227 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 286
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 287 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 346
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 347 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 379
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 321 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 380
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 381 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 440
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 441 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 473
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SNHGGRQLD+ A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 100/153 (65%), Gaps = 5/153 (3%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI 106
+D ++ W D+ LK TKLPIV+KG+ ED E+G S +++SN GGRQLD+ A I
Sbjct: 326 IDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNQGGRQLDFSRAPI 385
Query: 107 EALPEI-----AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKS 161
E L E + + K++V++DGGVR GTDV KAL LGAK V +GRP L+ + G++
Sbjct: 386 EVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRN 445
Query: 162 GVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
GV K ++IL +E + ++ L G TS+ E++ +++
Sbjct: 446 GVEKAIEILRDEIEMSMRLLGVTSIAELKPDLL 478
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 20 LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G A ++ Q+D + NW + WL+ + +++KG+L+AEDA
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
+ GA +++SNHGGRQLD + +E L + G V +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
LGA+ V +GR L+GLA G++GV +VL +L + D+ LA GC + + + + +E
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 20 LANFSGKXXXXXXXXXXXXXXAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G A ++ Q+D + NW + WL+ + +++KG+L+AEDA
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
+ GA +++SNHGGRQLD + +E L + G V +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
LGA+ V +GR L+GLA G++GV +VL +L + D+ LA GC + + + + +E
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 356
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+ I+ D+ + + LP+ +KGI EDA + ++ GAS I VSNHG RQL P S +
Sbjct: 220 QKISPRDIEEIAAHSGLPVFVKGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDT 279
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
LP IA+ V +V + D GVR G V KALA GA +V +GRP L+GLA G G VLD
Sbjct: 280 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
+ + + L+G +V +++
Sbjct: 340 YFQKDLTRVMQLTGSQNVEDLK 361
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+ I+ D+ + + LP+ +KGI EDA + ++ GAS I VSNHG RQL P S +
Sbjct: 214 QKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDT 273
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
LP IA+ V +V + D GVR G V KALA GA +V +GRP L+GLA G G VLD
Sbjct: 274 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 333
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
+ + + L+G +V +++
Sbjct: 334 YFQKDLTRVMQLTGSQNVEDLK 355
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 83/142 (58%)
Query: 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+ I+ D+ + + LP+ +KGI EDA + ++ GAS I VSNHG RQL P S +
Sbjct: 220 QKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDT 279
Query: 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLD 168
LP IA+ V +V + D GVR G V KALA GA +V +GRP L+GLA G G VLD
Sbjct: 280 LPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLD 339
Query: 169 ILINEFDQALALSGCTSVGEIQ 190
+ + + L+G +V +++
Sbjct: 340 YFQKDLTRVMQLTGSQNVEDLK 361
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA-----KAVGHK 119
LP+V + T E + ++ GA A+ V G + +P++ V K
Sbjct: 279 LPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARK 338
Query: 120 VDVYL--DGGVRYGTDVFKALALGAKMVFVG 148
DV + DGG+RY D+ KALA GA+ V VG
Sbjct: 339 YDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 59 LKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------VP--ASIEAL 109
+K+ + +++ ++T E K +E GA I V G VP +IE
Sbjct: 179 IKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKC 238
Query: 110 PEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+A G + + DGG+RY D+ KALA+GA V +G
Sbjct: 239 SSVASKFG--IPIIADGGIRYSGDIGKALAVGASSVMIG 275
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI---AKAVG---- 117
L I+ + TAE A+ +E G SA+ V G + +P+I A A G
Sbjct: 150 LEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE 209
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ + V DGG+R+ D+ KA+A GA V VG
Sbjct: 210 YGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI---AKAVG---- 117
L I+ + TAE A+ +E G SA+ V G + +P+I A A G
Sbjct: 172 LEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE 231
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ + V DGG+R+ D+ KA+A GA V VG
Sbjct: 232 YGIPVIADGGIRFSGDISKAIAAGASCVMVG 262
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 64 KLPIVLKGILTAEDAKI---GVEMGASAIMVSNHGGRQLDYVPASI-----------EAL 109
+LP +LK + D K +++G + +S GG Y+ +
Sbjct: 206 QLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTT 265
Query: 110 PEI---AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
++ A+ + KV++ GG+R+ D+ KAL LGAK V + R L
Sbjct: 266 AQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML 311
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 59 LKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------VP--ASIEAL 109
+K+ + +++ ++T E K +E GA I V G VP +IE
Sbjct: 140 IKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKC 199
Query: 110 PEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+A G + + DGG+RY D+ KALA+GA V +G
Sbjct: 200 SSVASKFG--IPIIADGGIRYSGDIGKALAVGASSVMIG 236
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+R G D KA+ALGA + + P L A GK + + +I E A+ L+G
Sbjct: 274 GGIRSGLDAAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKD 332
Query: 186 VGEIQREMVV 195
V +++ +V
Sbjct: 333 VDALKKTSIV 342
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA-------KAVG 117
L I+ + TAE K +E GA+ + V G + +P++ +A
Sbjct: 298 LNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK 357
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS 158
H + V DGG++Y D+ KALA GA +V +G G+A S
Sbjct: 358 HGIPVIADGGIKYSGDMVKALAAGAHVVMLGS-MFAGVAES 397
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI---AKAVG---- 117
L I+ + TAE A+ +E G SA+ V G + +P+I A A G
Sbjct: 273 LEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE 332
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ + V DGG+R+ D+ KA+A GA V VG
Sbjct: 333 YGIPVIADGGIRFSGDISKAIAAGASCVXVG 363
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIA-------KAVG 117
L I+ + TAE K +E GA+ + V G + +P++ +A
Sbjct: 298 LNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARK 357
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS 158
H + V DGG++Y D KALA GA +V +G G+A S
Sbjct: 358 HGIPVIADGGIKYSGDXVKALAAGAHVVXLGS-XFAGVAES 397
>pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0K|B Chain B, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0N|A Chain A, Ipp:dmapp Isomerase Type Ii, Fmn Complex
pdb|1P0N|B Chain B, Ipp:dmapp Isomerase Type Ii, Fmn Complex
Length = 349
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 24/158 (15%)
Query: 65 LPIVLK----GILTAEDAKIGVEMGASAIMVSNHGG------------RQLDYVPA---- 104
+P+++K G+ A K+ E GA+A+ + +GG RQ+ + +
Sbjct: 179 VPVIVKEVGFGMSKASAGKL-YEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGIS 237
Query: 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVR 164
+ +L EI ++ + GG++ DV KA+ALGA + L L SG+ G+
Sbjct: 238 TAASLAEI-RSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLL 296
Query: 165 KVLDILINEFDQALALSGCTSVGEIQREMVV--HETYY 200
+ + +++ E + + G ++ ++Q+ +V ET++
Sbjct: 297 EEIQLILEELKLIMTVLGARTIADLQKAPLVIKGETHH 334
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVGR 149
DGG+R+ DV KA+A GA V +G
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIGN 286
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 122 VYLDGGVRYGTDVFKALALGAKMVFVG 148
V DGG+RY D+ KA+A GA V +G
Sbjct: 331 VIADGGIRYSGDIVKAIAAGADAVMLG 357
>pdb|1NHO|A Chain A, Structural And Functional Characterization Of A
Thioredoxin-Like Protein From Methanobacterium
Thermoautotrophicum
Length = 85
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 101 YVPASIEALPEIAKAVGHKVDVY-------LDGGVRYGTDVFKALALGAKMVFVGRPALW 153
Y P +IE + E K G K+DV + + YG A+A+ + FVG P+
Sbjct: 15 YCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVVRFVGAPSRE 74
Query: 154 GLAHS 158
L +
Sbjct: 75 ELFEA 79
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG++ D+ KALA GA V +G
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIG 228
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ +A A+ G V + DGG+R+ D+ KA+ GA V +G
Sbjct: 315 VP-QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG+R DV K++ GA MV +G
Sbjct: 216 DGGIRTNGDVAKSIRFGATMVMIG 239
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ +A A+ G V + DGG+R+ D+ KA+ GA V +G
Sbjct: 335 VP-QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 381
>pdb|3PM6|A Chain A, Crystal Structure Of A Putative Fructose-1,6-Biphosphate
Aldolase From Coccidioides Immitis Solved By Combined
Sad Mr
pdb|3PM6|B Chain B, Crystal Structure Of A Putative Fructose-1,6-Biphosphate
Aldolase From Coccidioides Immitis Solved By Combined
Sad Mr
Length = 306
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 93 NHGGR--QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF-KALALGAKMVFVGR 149
N+G R QLDY E L I +AVG +V + L G + ++F K + G V V R
Sbjct: 198 NYGPRGVQLDY-----ERLQRINEAVGERVGLVLHGADPFTKEIFEKCIERGVAKVNVNR 252
>pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205)
From Streptococcus Pyogenes
Length = 491
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG++Y D+ KALA G V +G
Sbjct: 342 DGGIKYSGDIVKALAAGGNAVXLG 365
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
G V + DG + DV KA+A GA V +G P +GK
Sbjct: 275 GRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGK 318
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 95 GGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
GG DYV P ++ + K + + + GGV G D F+ + GA MV +G
Sbjct: 250 GGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG 304
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA 177
HK YL Y D K L K F GR +L A S + +L +L + A
Sbjct: 31 HKTPFYL-----YDFDKIKQAFLNYKEAFKGRKSLICYALKANSNL-SILSLLAHLESGA 84
Query: 178 LALSGCTSVGEIQREM 193
C S+GEIQR +
Sbjct: 85 ----DCVSIGEIQRAL 96
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA 177
HK YL Y D K L K F GR +L A S + +L +L + A
Sbjct: 31 HKTPFYL-----YDFDKIKQAFLNYKEAFKGRKSLICYALKANSNL-SILSLLAHLESGA 84
Query: 178 LALSGCTSVGEIQREM 193
C S+GEIQR +
Sbjct: 85 ----DCVSIGEIQRAL 96
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
H+V + DGG++ G D+ A LGA+ +G +L
Sbjct: 1063 HRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 1097
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
H+V + DGG++ G D+ A LGA+ +G +L
Sbjct: 1063 HRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 1097
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 68 VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114
V+ ++ AE AKI E GA A+M L+ VPA I A +A+
Sbjct: 21 VIMDVINAEQAKIAEEAGAVAVMA-------LERVPADIRAAGGVAR 60
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 68 VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114
V+ ++ AE AKI E GA A+M L+ VPA I A +A+
Sbjct: 24 VIMDVINAEQAKIAEEAGAVAVMA-------LERVPADIRAAGGVAR 63
>pdb|3ZR5|A Chain A, Structure Of Galactocerebrosidase From Mouse
pdb|3ZR6|A Chain A, Structure Of Galactocerebrosidase From Mouse In Complex
With Galactose
Length = 656
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 42 YITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH 94
YI + TI W+ V +LP G++TA++ G + AS I VS H
Sbjct: 268 YINGNMTSTIAWNLVA--SYYEELPYGRSGLMTAQEPWSGHYVVASPIWVSAH 318
>pdb|1DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|1DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
pdb|2DOR|A Chain A, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|2DOR|B Chain B, Dihydroorotate Dehydrogenase A From Lactococcus Lactis
Complexed With Orotate
pdb|1JUE|A Chain A, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|1JUE|B Chain B, 1.8 A Resolution Structure Of Native Lactococcus Lactis
Dihydroorotate Dehydrogenase A
pdb|2BSL|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BSL|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,4-Dihydroxybenzoate
pdb|2BX7|A Chain A, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
pdb|2BX7|B Chain B, Crystal Structure Of L. Lactis Dihydroorotate Dehydrogense
A In Complex With 3,5-Dihydroxybenzoate
Length = 311
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIG----TALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1JUB|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JUB|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1OVD|A Chain A, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
pdb|1OVD|B Chain B, The K136e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A In Complex With Orotate
Length = 311
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIGT----ALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1JQV|A Chain A, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQV|B Chain B, The K213e Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIGT----ALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1JQX|A Chain A, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JQX|B Chain B, The R57a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIGT----ALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1JRB|A Chain A, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRB|B Chain B, The P56a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIGT----ALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1JRC|A Chain A, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
pdb|1JRC|B Chain B, The N67a Mutant Of Lactococcus Lactis Dihydroorotate
Dehydrogenase A
Length = 311
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GG+ G D F+ L GA M+ +G L G + + D +I E ++ + G S
Sbjct: 249 GGIETGQDAFEHLLCGATMLQIGT----ALHKEGPA----IFDRIIKELEEIMNQKGYQS 300
Query: 186 VGEIQREM 193
+ + ++
Sbjct: 301 IADFHGKL 308
>pdb|1OKJ|A Chain A, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|B Chain B, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|C Chain C, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
pdb|1OKJ|D Chain D, Crystal Structure Of The Essential E. Coli Yeaz Protein By
Mad Method Using The Gadolinium Complex "dotma"
Length = 251
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSG--KSGVRKVL 167
GVR G + + LALGA++ +G L +A K+G +VL
Sbjct: 90 GVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVL 132
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
E A+ G V + DGG++ V KALALGA V +G
Sbjct: 352 EYARRFG--VPIIADGGIQTVGHVVKALALGASTVMMG 387
>pdb|2GEL|A Chain A, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEL|G Chain G, 2.05a Crystal Structure Of Salmonella Typhimurium Yeaz,
Form B
pdb|2GEM|A Chain A, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
pdb|2GEM|B Chain B, 2.1a Crystal Structure Of Salmonella Tyhpimurium Yeaz, A
Putative Gram-Negative Rpf, Form-A
Length = 231
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSG--KSGVRKVL 167
GVR G + + LALGA + +G L +A K+G +VL
Sbjct: 70 GVRIGIGIAQGLALGANLPMIGVSTLATMAQGAWRKTGATRVL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,415,365
Number of Sequences: 62578
Number of extensions: 199948
Number of successful extensions: 602
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 90
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)