Query psy16780
Match_columns 202
No_of_seqs 220 out of 1780
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:52:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538|consensus 100.0 7.7E-38 1.7E-42 263.7 16.8 184 12-195 171-354 (363)
2 PF01070 FMN_dh: FMN-dependent 100.0 1.3E-33 2.8E-38 248.4 19.0 159 36-194 197-355 (356)
3 PLN02493 probable peroxisomal 100.0 3.4E-32 7.3E-37 239.0 20.2 158 38-195 198-355 (367)
4 PLN02979 glycolate oxidase 100.0 4.3E-32 9.4E-37 237.0 20.3 158 38-195 197-354 (366)
5 TIGR02708 L_lactate_ox L-lacta 100.0 6.5E-32 1.4E-36 237.4 18.8 154 46-199 210-363 (367)
6 cd03332 LMO_FMN L-Lactate 2-mo 100.0 3.3E-31 7.1E-36 234.2 19.8 155 39-193 228-382 (383)
7 PRK11197 lldD L-lactate dehydr 100.0 3.2E-31 6.9E-36 234.0 19.1 156 41-196 222-377 (381)
8 cd04736 MDH_FMN Mandelate dehy 100.0 8.7E-31 1.9E-35 229.8 21.0 150 39-190 211-360 (361)
9 PLN02535 glycolate oxidase 100.0 1.7E-30 3.7E-35 228.3 19.0 159 38-196 197-355 (364)
10 cd04737 LOX_like_FMN L-Lactate 100.0 2.1E-30 4.4E-35 227.3 18.8 149 46-194 203-351 (351)
11 COG1304 idi Isopentenyl diphos 100.0 8.6E-31 1.9E-35 229.9 14.8 159 40-198 194-352 (360)
12 cd02922 FCB2_FMN Flavocytochro 100.0 7.4E-29 1.6E-33 217.2 19.9 151 41-191 190-343 (344)
13 PRK05437 isopentenyl pyrophosp 100.0 2.1E-28 4.7E-33 215.2 18.6 182 13-195 117-337 (352)
14 TIGR02151 IPP_isom_2 isopenten 100.0 2.2E-28 4.7E-33 213.8 17.0 182 13-195 110-330 (333)
15 cd02811 IDI-2_FMN Isopentenyl- 100.0 6.4E-28 1.4E-32 210.3 18.9 177 13-191 109-326 (326)
16 cd02809 alpha_hydroxyacid_oxid 100.0 8.3E-28 1.8E-32 207.3 18.9 141 51-191 159-299 (299)
17 cd02808 GltS_FMN Glutamate syn 99.9 2.2E-23 4.9E-28 185.8 17.5 157 40-196 184-391 (392)
18 PRK05458 guanosine 5'-monophos 99.9 1.3E-22 2.8E-27 176.3 13.7 190 2-195 70-314 (326)
19 TIGR01305 GMP_reduct_1 guanosi 99.9 1E-20 2.2E-25 163.5 15.6 149 44-192 129-329 (343)
20 TIGR01306 GMP_reduct_2 guanosi 99.8 5.7E-20 1.2E-24 159.2 15.2 189 4-197 70-313 (321)
21 cd04739 DHOD_like Dihydroorota 99.8 3.6E-19 7.9E-24 155.3 14.2 180 3-192 85-302 (325)
22 COG0167 PyrD Dihydroorotate de 99.8 6.9E-19 1.5E-23 151.7 13.6 143 43-193 139-307 (310)
23 PRK07107 inosine 5-monophospha 99.8 8.6E-19 1.9E-23 160.5 15.0 149 44-192 262-472 (502)
24 PRK07565 dihydroorotate dehydr 99.8 3.2E-18 6.9E-23 149.8 15.2 131 52-192 153-304 (334)
25 PRK08649 inosine 5-monophospha 99.8 3.4E-18 7.4E-23 151.1 15.2 145 52-196 175-367 (368)
26 cd04740 DHOD_1B_like Dihydroor 99.8 8.2E-18 1.8E-22 144.6 15.8 135 47-192 137-295 (296)
27 TIGR01037 pyrD_sub1_fam dihydr 99.8 4.9E-18 1.1E-22 146.3 14.3 136 46-192 139-298 (300)
28 PF00478 IMPDH: IMP dehydrogen 99.8 4.1E-18 9E-23 149.1 13.5 148 45-192 129-335 (352)
29 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 4.5E-18 9.7E-23 154.9 14.2 148 45-192 246-456 (475)
30 PRK05096 guanosine 5'-monophos 99.8 4.7E-18 1E-22 146.9 13.1 149 44-192 130-330 (346)
31 PRK07259 dihydroorotate dehydr 99.8 1.2E-17 2.6E-22 144.0 15.4 135 47-192 140-298 (301)
32 PLN02274 inosine-5'-monophosph 99.8 1.1E-17 2.3E-22 153.4 15.4 146 45-192 269-473 (505)
33 PTZ00314 inosine-5'-monophosph 99.8 8.8E-18 1.9E-22 153.8 14.6 148 44-191 261-466 (495)
34 PRK05567 inosine 5'-monophosph 99.8 1.4E-17 3.1E-22 152.4 15.7 147 46-192 250-455 (486)
35 cd00381 IMPDH IMPDH: The catal 99.8 1.1E-17 2.4E-22 145.9 14.3 149 45-193 115-320 (325)
36 PRK06843 inosine 5-monophospha 99.8 1.5E-17 3.3E-22 148.0 14.9 149 44-192 173-381 (404)
37 PLN02826 dihydroorotate dehydr 99.8 3.4E-17 7.4E-22 146.5 16.8 138 48-193 237-407 (409)
38 PLN02495 oxidoreductase, actin 99.8 9E-18 2E-22 149.0 12.8 183 3-193 98-336 (385)
39 TIGR01302 IMP_dehydrog inosine 99.7 3.9E-17 8.6E-22 148.1 15.4 147 44-190 244-449 (450)
40 TIGR01304 IMP_DH_rel_2 IMP deh 99.7 5.2E-17 1.1E-21 143.5 15.2 144 52-195 176-368 (369)
41 PF01645 Glu_synthase: Conserv 99.7 7.8E-17 1.7E-21 142.0 15.9 133 52-184 190-368 (368)
42 PRK08318 dihydropyrimidine deh 99.7 5.2E-17 1.1E-21 146.1 12.9 139 47-193 151-319 (420)
43 PRK05286 dihydroorotate dehydr 99.7 3E-16 6.6E-21 137.9 12.7 129 46-182 188-344 (344)
44 PRK02506 dihydroorotate dehydr 99.7 5E-16 1.1E-20 134.8 13.7 137 48-192 141-306 (310)
45 cd02940 DHPD_FMN Dihydropyrimi 99.7 2.2E-16 4.9E-21 136.2 11.0 119 47-173 151-298 (299)
46 PRK07807 inosine 5-monophospha 99.7 1E-15 2.2E-20 139.6 14.3 148 45-192 248-458 (479)
47 COG0069 GltB Glutamate synthas 99.7 1.8E-15 4E-20 136.4 15.3 139 54-192 292-476 (485)
48 cd04741 DHOD_1A_like Dihydroor 99.6 2.7E-15 5.9E-20 129.2 13.2 123 48-178 141-294 (294)
49 COG0042 tRNA-dihydrouridine sy 99.6 6.5E-15 1.4E-19 128.5 14.9 146 46-192 117-283 (323)
50 PRK10415 tRNA-dihydrouridine s 99.6 1.7E-14 3.6E-19 125.8 14.5 144 47-192 116-282 (321)
51 cd04738 DHOD_2_like Dihydrooro 99.6 2.4E-14 5.3E-19 125.0 11.2 120 46-173 179-326 (327)
52 PRK10550 tRNA-dihydrouridine s 99.6 8.9E-14 1.9E-18 120.8 14.6 129 46-176 113-259 (312)
53 PRK11750 gltB glutamate syntha 99.6 8.4E-14 1.8E-18 138.2 15.3 139 54-192 985-1168(1485)
54 PF01180 DHO_dh: Dihydroorotat 99.6 1.4E-14 3.1E-19 124.6 8.8 123 48-178 146-295 (295)
55 TIGR00737 nifR3_yhdG putative 99.5 1.6E-13 3.4E-18 119.4 15.3 144 47-192 114-280 (319)
56 cd02810 DHOD_DHPD_FMN Dihydroo 99.5 8.2E-14 1.8E-18 119.3 12.4 106 48-153 146-277 (289)
57 TIGR00736 nifR3_rel_arch TIM-b 99.5 8.5E-14 1.8E-18 116.0 11.2 146 3-153 54-225 (231)
58 TIGR01036 pyrD_sub2 dihydrooro 99.5 7.5E-14 1.6E-18 122.4 10.8 120 46-173 185-334 (335)
59 PF01207 Dus: Dihydrouridine s 99.5 9.7E-14 2.1E-18 120.4 9.6 144 47-192 105-270 (309)
60 TIGR00742 yjbN tRNA dihydrouri 99.5 7.8E-13 1.7E-17 115.2 14.7 142 47-192 106-277 (318)
61 KOG2550|consensus 99.5 6.8E-14 1.5E-18 122.9 7.4 150 43-192 270-476 (503)
62 KOG1436|consensus 99.4 1.7E-12 3.6E-17 111.0 11.8 121 64-192 252-396 (398)
63 PRK11815 tRNA-dihydrouridine s 99.4 8.4E-12 1.8E-16 109.4 15.6 143 46-192 115-287 (333)
64 cd02801 DUS_like_FMN Dihydrour 99.4 2.8E-12 6E-17 106.0 11.0 105 47-153 106-218 (231)
65 cd02911 arch_FMN Archeal FMN-b 99.4 3.7E-12 8E-17 106.5 10.3 94 48-150 124-222 (233)
66 KOG2335|consensus 99.4 5.7E-12 1.2E-16 109.6 10.8 106 47-153 124-238 (358)
67 TIGR03151 enACPred_II putative 99.3 3E-11 6.4E-16 104.8 13.2 95 54-154 100-196 (307)
68 PF03060 NMO: Nitronate monoox 99.2 1E-10 2.3E-15 102.3 12.6 97 53-153 126-224 (330)
69 COG2070 Dioxygenases related t 99.2 9.9E-11 2.2E-15 102.7 10.6 98 53-154 117-219 (336)
70 PF04131 NanE: Putative N-acet 99.2 1.2E-09 2.6E-14 87.9 14.1 101 48-153 77-178 (192)
71 PRK01130 N-acetylmannosamine-6 99.1 1.1E-09 2.4E-14 90.5 13.2 101 50-153 105-207 (221)
72 cd02803 OYE_like_FMN_family Ol 99.1 5.8E-10 1.3E-14 97.0 11.3 102 50-153 192-316 (327)
73 cd04729 NanE N-acetylmannosami 99.1 1.3E-09 2.8E-14 90.0 12.4 100 51-153 110-211 (219)
74 PRK13523 NADPH dehydrogenase N 99.1 4.7E-10 1E-14 98.6 10.0 103 49-153 192-310 (337)
75 cd00331 IGPS Indole-3-glycerol 99.1 3.7E-09 8.1E-14 87.0 12.7 102 52-153 60-206 (217)
76 cd04727 pdxS PdxS is a subunit 99.0 6E-09 1.3E-13 88.5 13.6 99 52-153 100-230 (283)
77 cd04743 NPD_PKS 2-Nitropropane 99.0 1.2E-09 2.5E-14 95.1 9.0 102 45-154 89-208 (320)
78 cd02931 ER_like_FMN Enoate red 99.0 3.3E-09 7.2E-14 94.7 11.7 104 48-153 200-340 (382)
79 PRK14024 phosphoribosyl isomer 99.0 2.7E-09 5.9E-14 89.5 10.2 104 47-153 109-227 (241)
80 cd04730 NPD_like 2-Nitropropan 99.0 1.1E-08 2.3E-13 84.9 13.4 104 53-160 92-197 (236)
81 cd04735 OYE_like_4_FMN Old yel 99.0 2.7E-09 5.8E-14 94.3 10.0 105 49-153 194-318 (353)
82 cd04734 OYE_like_3_FMN Old yel 99.0 4.8E-09 1E-13 92.4 11.1 103 49-153 191-320 (343)
83 cd04722 TIM_phosphate_binding 99.0 4.1E-09 8.8E-14 83.3 9.7 98 50-149 99-200 (200)
84 cd04732 HisA HisA. Phosphorib 99.0 9.5E-09 2.1E-13 85.2 12.2 103 49-153 58-224 (234)
85 TIGR00343 pyridoxal 5'-phospha 99.0 1.3E-08 2.7E-13 86.7 12.9 99 52-153 102-233 (287)
86 cd02932 OYE_YqiM_FMN Old yello 98.9 7.3E-09 1.6E-13 90.8 11.0 103 49-153 204-325 (336)
87 cd04731 HisF The cyclase subun 98.9 6.6E-09 1.4E-13 86.9 10.3 76 75-153 152-228 (243)
88 PRK00278 trpC indole-3-glycero 98.9 2.4E-08 5.3E-13 84.8 13.8 102 52-153 99-245 (260)
89 cd02933 OYE_like_FMN Old yello 98.9 1.3E-08 2.7E-13 89.6 12.0 101 49-153 202-319 (338)
90 PRK13585 1-(5-phosphoribosyl)- 98.9 3.6E-08 7.8E-13 82.2 12.5 102 50-153 62-227 (241)
91 PRK04180 pyridoxal biosynthesi 98.9 5.1E-08 1.1E-12 83.2 13.5 99 52-153 109-239 (293)
92 cd04733 OYE_like_2_FMN Old yel 98.9 2.4E-08 5.2E-13 87.7 11.7 104 48-153 198-327 (338)
93 TIGR00262 trpA tryptophan synt 98.9 1.6E-07 3.4E-12 79.7 15.9 112 42-155 64-234 (256)
94 KOG1799|consensus 98.9 1.4E-09 3.1E-14 94.2 3.2 183 3-194 189-423 (471)
95 PRK13587 1-(5-phosphoribosyl)- 98.8 4.6E-08 1E-12 81.8 11.8 101 51-153 63-226 (234)
96 PRK00748 1-(5-phosphoribosyl)- 98.8 2.2E-08 4.8E-13 83.0 9.5 76 75-153 149-225 (233)
97 PRK01033 imidazole glycerol ph 98.8 2.4E-08 5.1E-13 84.7 9.2 76 75-153 155-231 (258)
98 PRK00507 deoxyribose-phosphate 98.8 6.7E-08 1.4E-12 80.3 11.5 100 46-150 102-210 (221)
99 TIGR01304 IMP_DH_rel_2 IMP deh 98.8 5.1E-08 1.1E-12 86.5 10.7 97 47-149 116-217 (369)
100 COG0106 HisA Phosphoribosylfor 98.8 1.7E-07 3.6E-12 78.2 12.9 100 52-153 63-226 (241)
101 PRK07695 transcriptional regul 98.8 2.6E-07 5.7E-12 75.2 13.9 94 56-153 86-182 (201)
102 TIGR00007 phosphoribosylformim 98.8 5.6E-08 1.2E-12 80.6 9.9 77 75-154 148-224 (230)
103 PRK02083 imidazole glycerol ph 98.8 1.2E-07 2.5E-12 80.0 11.6 74 75-153 156-232 (253)
104 TIGR03572 WbuZ glycosyl amidat 98.8 1.6E-07 3.5E-12 78.0 12.2 75 75-152 156-231 (232)
105 CHL00200 trpA tryptophan synth 98.7 7.4E-07 1.6E-11 75.9 16.3 113 42-156 69-239 (263)
106 COG1902 NemA NADH:flavin oxido 98.7 9.4E-08 2E-12 84.7 11.0 102 50-153 200-323 (363)
107 COG0107 HisF Imidazoleglycerol 98.7 9.6E-08 2.1E-12 79.0 10.1 121 48-183 58-251 (256)
108 PF00977 His_biosynth: Histidi 98.7 1.3E-07 2.7E-12 78.9 10.8 101 51-153 60-225 (229)
109 cd04747 OYE_like_5_FMN Old yel 98.7 1.1E-07 2.5E-12 84.3 11.1 103 48-153 193-333 (361)
110 cd04742 NPD_FabD 2-Nitropropan 98.7 1.6E-07 3.4E-12 84.5 11.9 78 74-153 165-253 (418)
111 cd04728 ThiG Thiazole synthase 98.7 3E-07 6.5E-12 76.9 12.7 104 46-153 99-209 (248)
112 PRK08255 salicylyl-CoA 5-hydro 98.7 1.1E-07 2.3E-12 91.9 11.5 103 49-153 601-722 (765)
113 cd02930 DCR_FMN 2,4-dienoyl-Co 98.7 1.2E-07 2.6E-12 83.7 10.7 103 49-153 187-311 (353)
114 TIGR02814 pfaD_fam PfaD family 98.7 1.9E-07 4.1E-12 84.5 11.2 79 74-154 170-259 (444)
115 PRK00208 thiG thiazole synthas 98.7 5.2E-07 1.1E-11 75.6 12.9 104 46-153 99-209 (250)
116 PRK08649 inosine 5-monophospha 98.6 1.6E-07 3.6E-12 83.4 9.7 99 47-149 115-216 (368)
117 cd04723 HisA_HisF Phosphoribos 98.6 7.4E-07 1.6E-11 74.5 12.5 103 49-153 63-223 (233)
118 PRK13111 trpA tryptophan synth 98.6 2.5E-06 5.5E-11 72.4 15.7 126 43-171 67-253 (258)
119 TIGR00735 hisF imidazoleglycer 98.6 3E-07 6.6E-12 77.6 10.1 76 75-153 158-234 (254)
120 PF00218 IGPS: Indole-3-glycer 98.6 3.9E-07 8.5E-12 77.1 10.6 106 48-153 90-243 (254)
121 PLN02591 tryptophan synthase 98.6 3.3E-06 7.2E-11 71.4 15.9 112 42-155 56-225 (250)
122 cd04731 HisF The cyclase subun 98.6 5.4E-07 1.2E-11 75.3 11.0 76 75-153 30-105 (243)
123 PRK14114 1-(5-phosphoribosyl)- 98.6 1.1E-06 2.3E-11 74.0 12.0 99 52-153 62-228 (241)
124 COG0134 TrpC Indole-3-glycerol 98.5 7.3E-07 1.6E-11 75.1 10.4 107 48-154 88-242 (254)
125 PRK02083 imidazole glycerol ph 98.5 1.1E-06 2.4E-11 74.0 11.3 76 75-153 33-108 (253)
126 cd04724 Tryptophan_synthase_al 98.5 4.9E-06 1.1E-10 69.9 15.1 112 42-156 54-223 (242)
127 cd02929 TMADH_HD_FMN Trimethyl 98.5 9.9E-07 2.1E-11 78.5 11.3 103 48-153 199-324 (370)
128 PRK00043 thiE thiamine-phospha 98.5 3.2E-06 6.8E-11 68.8 13.4 79 73-153 112-193 (212)
129 COG3010 NanE Putative N-acetyl 98.5 2.5E-06 5.3E-11 69.6 12.0 94 55-153 119-214 (229)
130 PRK13125 trpA tryptophan synth 98.5 9.1E-06 2E-10 68.3 15.9 116 54-171 120-237 (244)
131 PRK04128 1-(5-phosphoribosyl)- 98.5 1.3E-06 2.8E-11 72.9 10.4 101 52-153 61-216 (228)
132 TIGR01919 hisA-trpF 1-(5-phosp 98.5 1.9E-06 4.2E-11 72.5 11.5 100 52-153 62-230 (243)
133 COG0274 DeoC Deoxyribose-phosp 98.5 9.9E-07 2.1E-11 72.9 9.3 101 46-150 105-214 (228)
134 TIGR00735 hisF imidazoleglycer 98.5 1.9E-06 4.1E-11 72.8 11.4 76 75-153 33-108 (254)
135 PF05690 ThiG: Thiazole biosyn 98.5 1.9E-06 4.2E-11 71.5 11.0 97 53-153 110-209 (247)
136 PF00724 Oxidored_FMN: NADH:fl 98.5 5.8E-07 1.3E-11 79.1 8.5 102 50-153 200-326 (341)
137 PRK13957 indole-3-glycerol-pho 98.5 5.1E-06 1.1E-10 70.0 13.2 102 52-154 90-236 (247)
138 PRK05848 nicotinate-nucleotide 98.4 3.3E-06 7.1E-11 72.3 12.0 89 52-152 168-261 (273)
139 TIGR00126 deoC deoxyribose-pho 98.4 1.9E-06 4.2E-11 71.1 10.1 99 46-149 98-205 (211)
140 PRK09140 2-dehydro-3-deoxy-6-p 98.4 9.3E-06 2E-10 66.8 14.1 93 51-153 92-184 (206)
141 PRK09427 bifunctional indole-3 98.4 2.7E-06 5.8E-11 77.6 11.5 130 52-191 98-272 (454)
142 PRK06552 keto-hydroxyglutarate 98.4 9.8E-06 2.1E-10 67.0 13.6 95 48-153 94-188 (213)
143 PRK10605 N-ethylmaleimide redu 98.4 4.5E-06 9.7E-11 74.1 12.3 99 50-153 210-326 (362)
144 KOG2333|consensus 98.4 4.8E-06 1.1E-10 75.3 12.1 104 51-154 376-496 (614)
145 CHL00162 thiG thiamin biosynth 98.4 4.5E-06 9.9E-11 70.1 11.2 97 53-153 124-223 (267)
146 PRK13802 bifunctional indole-3 98.4 6.9E-06 1.5E-10 78.3 13.0 103 52-154 99-246 (695)
147 cd00959 DeoC 2-deoxyribose-5-p 98.3 6.4E-06 1.4E-10 67.3 10.6 97 46-147 97-202 (203)
148 PRK00748 1-(5-phosphoribosyl)- 98.3 8.8E-06 1.9E-10 67.4 11.4 76 75-153 33-108 (233)
149 cd00564 TMP_TenI Thiamine mono 98.3 1.3E-05 2.9E-10 63.7 11.9 87 64-153 93-183 (196)
150 cd04732 HisA HisA. Phosphorib 98.3 8.4E-06 1.8E-10 67.5 11.0 76 75-153 32-107 (234)
151 cd00452 KDPG_aldolase KDPG and 98.3 7.8E-06 1.7E-10 66.1 10.5 89 54-153 88-176 (190)
152 PLN02446 (5-phosphoribosyl)-5- 98.3 1.1E-05 2.4E-10 68.5 11.7 98 52-152 72-242 (262)
153 PLN02617 imidazole glycerol ph 98.3 1E-05 2.2E-10 75.3 11.9 47 105-153 470-517 (538)
154 TIGR00734 hisAF_rel hisA/hisF 98.3 5.6E-06 1.2E-10 68.7 8.9 49 103-153 170-218 (221)
155 KOG0399|consensus 98.2 7.4E-06 1.6E-10 80.5 10.5 141 52-192 1081-1269(2142)
156 PLN02460 indole-3-glycerol-pho 98.2 1.2E-05 2.6E-10 70.4 10.9 106 48-153 161-322 (338)
157 PRK06512 thiamine-phosphate py 98.2 4.6E-05 1E-09 63.3 13.4 95 56-153 100-197 (221)
158 PRK13586 1-(5-phosphoribosyl)- 98.2 2.3E-05 5.1E-10 65.5 11.7 99 52-153 61-223 (232)
159 TIGR03128 RuMP_HxlA 3-hexulose 98.2 4.2E-05 9.2E-10 62.2 12.7 96 53-153 92-191 (206)
160 PRK14024 phosphoribosyl isomer 98.2 2E-05 4.3E-10 66.2 10.9 75 75-153 35-109 (241)
161 KOG2334|consensus 98.2 1.2E-05 2.7E-10 71.6 9.7 106 47-153 132-247 (477)
162 COG0159 TrpA Tryptophan syntha 98.2 0.00016 3.5E-09 61.4 16.0 113 42-157 71-242 (265)
163 PRK07455 keto-hydroxyglutarate 98.2 2.7E-05 5.8E-10 63.0 10.5 87 57-152 98-184 (187)
164 cd04726 KGPDC_HPS 3-Keto-L-gul 98.1 3.6E-05 7.9E-10 62.2 11.2 97 53-153 93-191 (202)
165 PLN02411 12-oxophytodienoate r 98.1 2.7E-05 6E-10 69.8 11.3 101 50-153 216-347 (391)
166 PRK07028 bifunctional hexulose 98.1 5.1E-05 1.1E-09 68.8 12.5 95 54-153 98-195 (430)
167 TIGR02129 hisA_euk phosphoribo 98.1 5.8E-05 1.3E-09 63.9 11.9 100 52-153 64-237 (253)
168 PF00290 Trp_syntA: Tryptophan 98.1 0.00013 2.8E-09 62.1 13.8 115 42-159 64-237 (259)
169 TIGR00693 thiE thiamine-phosph 98.1 8.6E-05 1.9E-09 59.8 12.2 79 73-153 104-185 (196)
170 PRK07428 nicotinate-nucleotide 98.1 7.3E-05 1.6E-09 64.5 12.3 90 52-152 182-275 (288)
171 PRK02615 thiamine-phosphate py 98.1 0.00011 2.4E-09 64.9 13.7 83 68-153 242-327 (347)
172 PRK08883 ribulose-phosphate 3- 98.1 0.00019 4.2E-09 59.5 14.2 122 46-174 37-215 (220)
173 PRK07226 fructose-bisphosphate 98.1 8.9E-05 1.9E-09 63.1 12.3 91 52-153 124-236 (267)
174 cd00958 DhnA Class I fructose- 98.0 0.0001 2.2E-09 61.2 12.3 91 52-153 107-219 (235)
175 TIGR03572 WbuZ glycosyl amidat 98.0 7E-05 1.5E-09 62.2 11.3 76 75-153 33-108 (232)
176 PF04481 DUF561: Protein of un 98.0 8.2E-05 1.8E-09 61.3 11.2 103 47-153 44-219 (242)
177 COG2022 ThiG Uncharacterized e 98.0 5.9E-05 1.3E-09 62.6 10.1 77 73-153 139-216 (262)
178 PRK04302 triosephosphate isome 98.0 0.00016 3.4E-09 60.0 12.9 97 55-153 106-207 (223)
179 TIGR00078 nadC nicotinate-nucl 98.0 0.00012 2.5E-09 62.5 12.4 86 54-151 166-253 (265)
180 PRK11840 bifunctional sulfur c 98.0 5.3E-05 1.1E-09 66.0 10.3 95 55-153 186-283 (326)
181 PRK05742 nicotinate-nucleotide 98.0 0.0001 2.2E-09 63.3 11.8 86 55-152 179-265 (277)
182 TIGR01163 rpe ribulose-phospha 98.0 0.00017 3.6E-09 58.5 12.6 103 50-153 42-198 (210)
183 PRK13585 1-(5-phosphoribosyl)- 98.0 8.9E-05 1.9E-09 61.8 11.1 76 75-153 35-110 (241)
184 PLN02334 ribulose-phosphate 3- 98.0 0.0002 4.3E-09 59.6 13.1 115 53-178 105-226 (229)
185 cd00945 Aldolase_Class_I Class 98.0 0.0001 2.3E-09 58.6 10.6 97 48-148 95-201 (201)
186 PRK08072 nicotinate-nucleotide 97.9 0.00016 3.6E-09 62.0 11.9 90 52-152 174-264 (277)
187 PRK04180 pyridoxal biosynthesi 97.9 0.00024 5.2E-09 61.0 12.8 85 52-147 62-147 (293)
188 cd01573 modD_like ModD; Quinol 97.9 0.00021 4.4E-09 61.2 12.5 87 53-151 171-261 (272)
189 cd01572 QPRTase Quinolinate ph 97.9 0.00014 3E-09 62.1 11.4 87 54-152 170-258 (268)
190 COG0214 SNZ1 Pyridoxine biosyn 97.9 0.00011 2.4E-09 61.1 10.1 98 54-153 67-242 (296)
191 PF02581 TMP-TENI: Thiamine mo 97.9 0.00013 2.9E-09 58.3 10.3 82 67-151 96-180 (180)
192 TIGR00007 phosphoribosylformim 97.9 0.00021 4.5E-09 59.2 11.7 76 75-153 31-106 (230)
193 cd04727 pdxS PdxS is a subunit 97.9 0.00048 1E-08 58.9 13.8 85 52-147 53-138 (283)
194 PRK08385 nicotinate-nucleotide 97.9 0.00024 5.3E-09 61.0 12.0 88 53-152 170-263 (278)
195 PRK04128 1-(5-phosphoribosyl)- 97.9 7.2E-05 1.6E-09 62.4 8.6 73 76-152 34-106 (228)
196 PRK01033 imidazole glycerol ph 97.9 0.00023 4.9E-09 60.4 11.5 76 75-153 33-108 (258)
197 TIGR01949 AroFGH_arch predicte 97.9 0.00026 5.7E-09 59.9 11.9 89 54-153 123-232 (258)
198 PF04131 NanE: Putative N-acet 97.8 0.00016 3.4E-09 58.6 9.5 89 52-148 20-119 (192)
199 PRK05283 deoxyribose-phosphate 97.8 9.4E-05 2E-09 62.7 8.7 97 45-145 110-221 (257)
200 PRK13587 1-(5-phosphoribosyl)- 97.8 0.00023 5E-09 59.6 11.0 76 74-152 32-109 (234)
201 COG0352 ThiE Thiamine monophos 97.8 0.00063 1.4E-08 56.2 13.3 95 56-153 94-191 (211)
202 PRK07114 keto-hydroxyglutarate 97.8 0.00033 7.2E-09 58.2 11.5 96 48-153 97-193 (222)
203 cd00405 PRAI Phosphoribosylant 97.8 0.00014 3E-09 59.3 8.9 96 53-153 85-186 (203)
204 PRK06106 nicotinate-nucleotide 97.8 0.00042 9.1E-09 59.6 12.0 89 52-152 180-270 (281)
205 TIGR01182 eda Entner-Doudoroff 97.8 0.00042 9.2E-09 56.9 11.6 96 48-153 86-181 (204)
206 TIGR00343 pyridoxal 5'-phospha 97.8 0.00031 6.7E-09 60.1 11.0 85 52-147 55-140 (287)
207 PF01791 DeoC: DeoC/LacD famil 97.8 9.7E-05 2.1E-09 61.6 7.8 100 49-152 107-234 (236)
208 cd01568 QPRTase_NadC Quinolina 97.8 0.00058 1.3E-08 58.3 12.4 87 54-152 169-259 (269)
209 TIGR02129 hisA_euk phosphoribo 97.8 0.00016 3.5E-09 61.2 8.6 69 75-153 41-109 (253)
210 PRK04169 geranylgeranylglycery 97.7 0.00035 7.5E-09 58.5 10.4 65 84-153 153-218 (232)
211 PF00977 His_biosynth: Histidi 97.7 0.00024 5.2E-09 59.2 9.5 76 75-153 32-107 (229)
212 PRK06559 nicotinate-nucleotide 97.7 0.00055 1.2E-08 59.1 11.7 88 53-152 184-273 (290)
213 TIGR01182 eda Entner-Doudoroff 97.7 0.00041 9E-09 57.0 10.0 85 48-147 42-127 (204)
214 PLN02898 HMP-P kinase/thiamin- 97.7 0.0011 2.5E-08 61.2 13.8 93 58-153 382-480 (502)
215 cd04723 HisA_HisF Phosphoribos 97.7 0.00029 6.4E-09 58.8 8.9 74 75-152 38-111 (233)
216 PRK06543 nicotinate-nucleotide 97.7 0.00078 1.7E-08 57.9 11.6 89 52-152 179-269 (281)
217 PRK03512 thiamine-phosphate py 97.7 0.0018 3.9E-08 53.4 13.4 84 68-153 104-191 (211)
218 COG0107 HisF Imidazoleglycerol 97.6 0.00045 9.8E-09 57.5 9.5 76 75-153 33-108 (256)
219 cd00956 Transaldolase_FSA Tran 97.6 0.0019 4.1E-08 53.3 13.2 101 53-157 91-194 (211)
220 PRK12290 thiE thiamine-phospha 97.6 0.0016 3.5E-08 59.0 13.4 80 73-153 308-397 (437)
221 PTZ00170 D-ribulose-5-phosphat 97.6 0.0019 4.2E-08 53.8 13.0 123 46-176 44-223 (228)
222 KOG1606|consensus 97.6 0.00076 1.6E-08 55.5 10.1 39 54-92 68-107 (296)
223 PF01729 QRPTase_C: Quinolinat 97.6 0.0012 2.7E-08 52.6 10.8 98 42-152 59-159 (169)
224 PRK13586 1-(5-phosphoribosyl)- 97.6 0.0012 2.5E-08 55.3 11.1 75 75-153 33-107 (232)
225 cd02812 PcrB_like PcrB_like pr 97.6 0.00053 1.1E-08 56.9 8.9 69 78-153 141-209 (219)
226 PRK09016 quinolinate phosphori 97.5 0.0014 3E-08 56.7 11.6 88 52-151 195-283 (296)
227 PRK07896 nicotinate-nucleotide 97.5 0.0015 3.2E-08 56.4 11.6 88 53-152 187-278 (289)
228 TIGR01769 GGGP geranylgeranylg 97.5 0.00072 1.6E-08 55.6 9.2 66 78-148 140-205 (205)
229 TIGR00875 fsa_talC_mipB fructo 97.5 0.0058 1.3E-07 50.5 14.4 90 64-156 101-193 (213)
230 PLN02446 (5-phosphoribosyl)-5- 97.5 0.0012 2.6E-08 56.1 10.5 71 75-153 46-116 (262)
231 TIGR01334 modD putative molybd 97.5 0.0022 4.7E-08 55.1 12.0 98 42-151 165-266 (277)
232 PRK06552 keto-hydroxyglutarate 97.5 0.0013 2.8E-08 54.4 9.8 84 49-147 48-135 (213)
233 PF01884 PcrB: PcrB family; I 97.5 0.00079 1.7E-08 56.2 8.6 65 84-153 152-216 (230)
234 PF01081 Aldolase: KDPG and KH 97.5 0.0006 1.3E-08 55.7 7.8 96 48-153 86-181 (196)
235 PRK06806 fructose-bisphosphate 97.4 0.0069 1.5E-07 52.1 14.5 109 73-184 153-278 (281)
236 PRK06978 nicotinate-nucleotide 97.4 0.0024 5.2E-08 55.2 11.5 87 54-152 194-281 (294)
237 PRK08745 ribulose-phosphate 3- 97.4 0.0071 1.5E-07 50.3 14.0 122 46-174 41-219 (223)
238 PRK08999 hypothetical protein; 97.4 0.0011 2.3E-08 57.4 9.3 76 73-151 234-311 (312)
239 cd00381 IMPDH IMPDH: The catal 97.4 0.0011 2.5E-08 58.0 9.2 68 75-148 96-163 (325)
240 PRK12656 fructose-6-phosphate 97.4 0.013 2.8E-07 48.8 14.9 90 64-156 105-197 (222)
241 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.0023 5E-08 53.9 10.7 73 76-152 35-107 (243)
242 PRK14114 1-(5-phosphoribosyl)- 97.4 0.0014 2.9E-08 55.2 9.3 74 75-152 33-106 (241)
243 PRK09722 allulose-6-phosphate 97.4 0.0091 2E-07 49.9 14.1 125 46-175 39-220 (229)
244 PRK13813 orotidine 5'-phosphat 97.4 0.0011 2.4E-08 54.3 8.4 117 52-175 43-213 (215)
245 cd00452 KDPG_aldolase KDPG and 97.4 0.0027 5.8E-08 51.3 10.4 82 52-148 42-124 (190)
246 PRK06015 keto-hydroxyglutarate 97.3 0.0022 4.7E-08 52.6 9.8 82 51-147 41-123 (201)
247 PF04898 Glu_syn_central: Glut 97.3 0.0042 9.1E-08 53.5 11.9 147 46-192 98-277 (287)
248 PRK06096 molybdenum transport 97.3 0.0041 8.8E-08 53.6 11.8 97 42-150 166-266 (284)
249 PF00478 IMPDH: IMP dehydrogen 97.3 0.0019 4E-08 57.2 9.7 90 53-148 76-177 (352)
250 PRK06015 keto-hydroxyglutarate 97.3 0.0057 1.2E-07 50.2 11.9 95 48-152 82-176 (201)
251 PRK01362 putative translaldola 97.3 0.012 2.6E-07 48.7 13.9 98 55-156 93-193 (214)
252 TIGR01859 fruc_bis_ald_ fructo 97.3 0.0073 1.6E-07 52.0 13.1 108 74-184 154-279 (282)
253 PF01081 Aldolase: KDPG and KH 97.3 0.002 4.4E-08 52.6 9.2 83 50-147 44-127 (196)
254 COG0269 SgbH 3-hexulose-6-phos 97.3 0.009 2E-07 49.3 12.7 108 61-175 103-213 (217)
255 PLN02716 nicotinate-nucleotide 97.3 0.0038 8.3E-08 54.3 11.1 96 54-152 188-294 (308)
256 PRK13307 bifunctional formalde 97.3 0.0058 1.3E-07 54.9 12.4 95 53-153 266-363 (391)
257 KOG4201|consensus 97.3 0.0061 1.3E-07 50.4 11.4 81 71-154 192-272 (289)
258 TIGR01768 GGGP-family geranylg 97.2 0.0025 5.5E-08 53.0 9.0 66 84-153 148-213 (223)
259 cd00429 RPE Ribulose-5-phospha 97.2 0.0051 1.1E-07 49.7 10.5 97 54-153 96-199 (211)
260 PRK11750 gltB glutamate syntha 97.2 0.0054 1.2E-07 62.7 12.2 119 76-194 601-733 (1485)
261 PRK05581 ribulose-phosphate 3- 97.1 0.0093 2E-07 48.7 11.7 97 54-153 100-203 (220)
262 TIGR00259 thylakoid_BtpA membr 97.1 0.004 8.7E-08 52.9 9.3 91 76-174 161-256 (257)
263 PRK12376 putative translaldola 97.1 0.03 6.5E-07 47.0 14.1 97 56-156 105-207 (236)
264 PRK12653 fructose-6-phosphate 97.1 0.031 6.8E-07 46.4 14.0 90 64-156 103-195 (220)
265 PTZ00314 inosine-5'-monophosph 97.1 0.0034 7.4E-08 58.1 9.1 68 75-148 243-310 (495)
266 PLN02617 imidazole glycerol ph 97.1 0.0037 7.9E-08 58.4 9.3 77 75-153 270-359 (538)
267 PRK06843 inosine 5-monophospha 97.0 0.003 6.5E-08 56.9 8.4 68 75-148 155-222 (404)
268 PRK05718 keto-hydroxyglutarate 97.0 0.0078 1.7E-07 49.7 10.2 83 50-147 51-134 (212)
269 COG0106 HisA Phosphoribosylfor 97.0 0.0061 1.3E-07 51.2 9.5 75 75-152 34-108 (241)
270 PRK08005 epimerase; Validated 97.0 0.025 5.5E-07 46.7 13.1 104 47-152 39-195 (210)
271 PRK07315 fructose-bisphosphate 97.0 0.025 5.5E-07 48.9 13.7 79 73-153 154-237 (293)
272 PRK13306 ulaD 3-keto-L-gulonat 97.0 0.011 2.3E-07 48.9 11.0 117 53-176 44-213 (216)
273 PRK06801 hypothetical protein; 97.0 0.033 7.2E-07 48.1 14.3 108 74-184 157-283 (286)
274 COG0036 Rpe Pentose-5-phosphat 97.0 0.019 4.2E-07 47.6 12.1 122 46-174 41-217 (220)
275 PRK12655 fructose-6-phosphate 97.0 0.046 9.9E-07 45.5 14.4 104 64-170 103-211 (220)
276 PRK07114 keto-hydroxyglutarate 97.0 0.0064 1.4E-07 50.6 9.0 81 52-147 53-138 (222)
277 cd00951 KDGDH 5-dehydro-4-deox 97.0 0.0062 1.3E-07 52.4 9.3 93 76-172 25-122 (289)
278 PRK03620 5-dehydro-4-deoxygluc 96.9 0.0072 1.6E-07 52.3 9.7 94 76-173 32-130 (303)
279 PLN02274 inosine-5'-monophosph 96.9 0.0041 9E-08 57.7 8.5 68 75-148 250-317 (505)
280 PRK05718 keto-hydroxyglutarate 96.9 0.02 4.2E-07 47.4 11.6 94 49-152 94-187 (212)
281 PRK09140 2-dehydro-3-deoxy-6-p 96.9 0.011 2.4E-07 48.5 10.1 81 52-147 48-130 (206)
282 PRK08227 autoinducer 2 aldolas 96.9 0.015 3.1E-07 49.7 11.0 87 53-153 126-231 (264)
283 PRK09517 multifunctional thiam 96.9 0.025 5.4E-07 55.0 13.9 97 56-153 91-199 (755)
284 TIGR01302 IMP_dehydrog inosine 96.9 0.0043 9.2E-08 56.7 8.2 68 75-148 226-293 (450)
285 PLN02417 dihydrodipicolinate s 96.9 0.0091 2E-07 51.1 9.8 94 76-172 26-124 (280)
286 cd00952 CHBPH_aldolase Trans-o 96.9 0.0079 1.7E-07 52.3 9.4 94 76-172 33-131 (309)
287 TIGR01305 GMP_reduct_1 guanosi 96.8 0.011 2.4E-07 51.9 9.7 69 74-148 108-178 (343)
288 cd00331 IGPS Indole-3-glycerol 96.8 0.013 2.9E-07 47.9 9.8 72 75-152 34-105 (217)
289 PRK07107 inosine 5-monophospha 96.8 0.0065 1.4E-07 56.3 8.7 69 75-148 244-312 (502)
290 TIGR02313 HpaI-NOT-DapA 2,4-di 96.8 0.013 2.9E-07 50.5 10.1 95 76-173 25-124 (294)
291 cd00408 DHDPS-like Dihydrodipi 96.8 0.015 3.3E-07 49.4 10.3 94 76-172 22-120 (281)
292 COG0329 DapA Dihydrodipicolina 96.8 0.013 2.8E-07 50.8 9.8 93 76-171 29-126 (299)
293 COG3010 NanE Putative N-acetyl 96.8 0.023 5.1E-07 46.6 10.5 89 52-147 54-153 (229)
294 PRK01130 N-acetylmannosamine-6 96.7 0.035 7.6E-07 45.6 11.8 91 53-148 45-146 (221)
295 PRK05096 guanosine 5'-monophos 96.7 0.012 2.7E-07 51.7 9.4 69 74-148 109-179 (346)
296 PRK07565 dihydroorotate dehydr 96.7 0.016 3.6E-07 50.8 10.3 95 53-149 90-198 (334)
297 TIGR03249 KdgD 5-dehydro-4-deo 96.7 0.013 2.9E-07 50.5 9.5 94 76-173 30-128 (296)
298 PF03437 BtpA: BtpA family; I 96.7 0.023 4.9E-07 48.3 10.6 87 76-170 162-252 (254)
299 TIGR00683 nanA N-acetylneurami 96.7 0.016 3.5E-07 49.9 9.9 93 76-171 25-123 (290)
300 PF00834 Ribul_P_3_epim: Ribul 96.7 0.018 4E-07 47.1 9.7 100 52-152 45-198 (201)
301 PRK07807 inosine 5-monophospha 96.7 0.01 2.2E-07 54.8 8.8 68 75-148 229-296 (479)
302 TIGR01303 IMP_DH_rel_1 IMP deh 96.6 0.012 2.5E-07 54.3 8.9 68 75-148 227-294 (475)
303 COG0157 NadC Nicotinate-nucleo 96.6 0.037 8E-07 47.4 11.2 87 54-151 176-265 (280)
304 PRK05458 guanosine 5'-monophos 96.6 0.024 5.1E-07 49.9 10.3 68 75-148 99-168 (326)
305 TIGR02134 transald_staph trans 96.6 0.1 2.2E-06 43.8 13.6 100 53-156 102-207 (236)
306 cd04729 NanE N-acetylmannosami 96.6 0.066 1.4E-06 43.9 12.3 92 52-148 48-150 (219)
307 TIGR00674 dapA dihydrodipicoli 96.5 0.027 5.8E-07 48.3 10.1 94 76-172 23-121 (285)
308 PRK08091 ribulose-phosphate 3- 96.5 0.091 2E-06 43.9 12.9 97 53-152 106-211 (228)
309 PRK08185 hypothetical protein; 96.5 0.12 2.7E-06 44.5 14.1 109 74-184 150-277 (283)
310 TIGR01306 GMP_reduct_2 guanosi 96.5 0.029 6.3E-07 49.2 10.3 67 76-148 97-165 (321)
311 PRK04147 N-acetylneuraminate l 96.5 0.023 5E-07 48.9 9.5 93 76-171 28-126 (293)
312 cd00954 NAL N-Acetylneuraminic 96.5 0.025 5.4E-07 48.6 9.5 95 76-173 25-125 (288)
313 PRK13957 indole-3-glycerol-pho 96.4 0.047 1E-06 46.2 10.8 71 76-152 65-135 (247)
314 cd00950 DHDPS Dihydrodipicolin 96.4 0.029 6.3E-07 47.8 9.7 94 76-172 25-123 (284)
315 PF00701 DHDPS: Dihydrodipicol 96.4 0.019 4.1E-07 49.1 8.4 92 76-170 26-122 (289)
316 COG0800 Eda 2-keto-3-deoxy-6-p 96.4 0.043 9.3E-07 45.2 9.9 96 48-153 91-186 (211)
317 TIGR00734 hisAF_rel hisA/hisF 96.3 0.024 5.1E-07 47.1 8.4 72 75-152 39-112 (221)
318 PRK07709 fructose-bisphosphate 96.3 0.14 3.1E-06 44.2 13.3 110 73-184 156-282 (285)
319 PRK03170 dihydrodipicolinate s 96.2 0.038 8.2E-07 47.4 9.4 94 76-172 26-124 (292)
320 cd00516 PRTase_typeII Phosphor 96.2 0.076 1.7E-06 45.2 10.9 91 54-152 170-271 (281)
321 PRK06852 aldolase; Validated 96.2 0.11 2.3E-06 45.3 11.7 96 53-153 153-270 (304)
322 PRK05567 inosine 5'-monophosph 96.1 0.03 6.4E-07 51.7 8.6 68 75-148 230-297 (486)
323 PRK07998 gatY putative fructos 96.0 0.22 4.9E-06 42.9 13.1 109 74-184 154-278 (283)
324 cd00945 Aldolase_Class_I Class 96.0 0.11 2.3E-06 41.0 10.5 65 76-153 17-90 (201)
325 PRK12738 kbaY tagatose-bisphos 96.0 0.3 6.5E-06 42.2 13.7 109 74-184 156-281 (286)
326 COG1646 Predicted phosphate-bi 95.9 0.023 5E-07 47.4 6.1 36 118-153 190-225 (240)
327 PRK05835 fructose-bisphosphate 95.9 0.35 7.7E-06 42.2 13.7 109 74-184 156-304 (307)
328 cd01571 NAPRTase_B Nicotinate 95.9 0.072 1.6E-06 46.3 9.5 94 54-153 172-278 (302)
329 PRK13397 3-deoxy-7-phosphohept 95.9 0.17 3.8E-06 42.8 11.5 96 53-151 112-222 (250)
330 PRK09195 gatY tagatose-bisphos 95.9 0.35 7.6E-06 41.7 13.5 109 74-184 156-281 (284)
331 cd00377 ICL_PEPM Members of th 95.8 0.091 2E-06 44.2 9.5 97 54-150 59-182 (243)
332 PRK08610 fructose-bisphosphate 95.7 0.4 8.7E-06 41.4 13.4 110 73-184 156-282 (286)
333 cd02809 alpha_hydroxyacid_oxid 95.7 0.16 3.5E-06 43.9 10.9 88 56-148 107-200 (299)
334 PF09370 TIM-br_sig_trns: TIM- 95.7 0.087 1.9E-06 44.9 8.9 85 67-151 152-249 (268)
335 cd04726 KGPDC_HPS 3-Keto-L-gul 95.6 0.32 7E-06 39.0 11.8 87 53-148 41-133 (202)
336 PRK00230 orotidine 5'-phosphat 95.5 0.062 1.4E-06 44.8 7.4 75 79-174 142-227 (230)
337 PLN02535 glycolate oxidase 95.4 0.15 3.3E-06 45.4 10.0 91 55-148 114-251 (364)
338 PRK14057 epimerase; Provisiona 95.4 0.39 8.4E-06 40.8 11.9 97 53-152 113-225 (254)
339 PLN02979 glycolate oxidase 95.4 0.17 3.8E-06 45.1 10.2 92 55-149 111-252 (366)
340 PRK12858 tagatose 1,6-diphosph 95.4 0.083 1.8E-06 46.7 8.1 99 53-154 142-282 (340)
341 TIGR01858 tag_bisphos_ald clas 95.3 0.73 1.6E-05 39.8 13.5 109 74-184 154-279 (282)
342 COG0800 Eda 2-keto-3-deoxy-6-p 95.3 0.18 3.9E-06 41.6 9.3 84 55-147 6-91 (211)
343 TIGR00167 cbbA ketose-bisphosp 95.3 0.72 1.6E-05 39.9 13.4 109 74-184 159-285 (288)
344 PRK12737 gatY tagatose-bisphos 95.3 0.81 1.8E-05 39.5 13.7 109 74-184 156-281 (284)
345 cd00947 TBP_aldolase_IIB Tagat 95.2 0.84 1.8E-05 39.2 13.6 108 74-183 149-274 (276)
346 PF04309 G3P_antiterm: Glycero 95.0 0.03 6.6E-07 44.9 3.9 101 41-153 65-174 (175)
347 PF01116 F_bP_aldolase: Fructo 95.0 0.92 2E-05 39.2 13.2 110 74-184 156-284 (287)
348 cd04739 DHOD_like Dihydroorota 95.0 0.35 7.6E-06 42.3 10.8 94 55-150 90-197 (325)
349 PLN02493 probable peroxisomal 95.0 0.27 5.8E-06 44.0 10.1 92 55-149 112-253 (367)
350 PRK12857 fructose-1,6-bisphosp 94.9 1.2 2.7E-05 38.4 13.7 109 74-184 156-281 (284)
351 PRK13398 3-deoxy-7-phosphohept 94.9 0.55 1.2E-05 40.1 11.5 97 53-152 124-235 (266)
352 PRK00278 trpC indole-3-glycero 94.7 0.35 7.6E-06 41.0 9.9 72 75-152 73-144 (260)
353 PLN02591 tryptophan synthase 94.6 0.069 1.5E-06 45.2 5.3 45 49-93 174-219 (250)
354 cd02922 FCB2_FMN Flavocytochro 94.6 0.56 1.2E-05 41.5 11.1 91 56-149 107-242 (344)
355 PRK09250 fructose-bisphosphate 94.5 0.23 5E-06 44.0 8.5 101 53-153 178-323 (348)
356 COG1830 FbaB DhnA-type fructos 94.5 0.21 4.6E-06 42.5 7.9 79 78-170 172-256 (265)
357 TIGR01361 DAHP_synth_Bsub phos 94.5 0.86 1.9E-05 38.8 11.6 97 53-152 122-233 (260)
358 PRK05437 isopentenyl pyrophosp 94.4 0.69 1.5E-05 41.0 11.4 99 48-149 104-218 (352)
359 cd00439 Transaldolase Transald 94.2 1.3 2.9E-05 37.5 12.2 89 64-155 139-241 (252)
360 CHL00200 trpA tryptophan synth 94.2 0.095 2.1E-06 44.7 5.3 42 52-93 190-232 (263)
361 COG0434 SgcQ Predicted TIM-bar 94.2 0.34 7.5E-06 40.7 8.3 82 78-171 169-258 (263)
362 COG0176 MipB Transaldolase [Ca 94.1 2.8 6.1E-05 35.3 13.7 83 73-158 124-210 (239)
363 PF03932 CutC: CutC family; I 94.1 0.63 1.4E-05 38.2 9.7 73 73-149 8-93 (201)
364 cd03332 LMO_FMN L-Lactate 2-mo 94.1 0.72 1.6E-05 41.5 10.8 42 105-149 241-282 (383)
365 TIGR03128 RuMP_HxlA 3-hexulose 94.1 1.2 2.7E-05 35.8 11.4 89 52-149 39-134 (206)
366 cd03319 L-Ala-DL-Glu_epimerase 94.1 0.51 1.1E-05 40.8 9.7 93 48-150 160-260 (316)
367 PF04481 DUF561: Protein of un 94.1 0.58 1.3E-05 38.9 9.3 62 76-152 31-94 (242)
368 cd02812 PcrB_like PcrB_like pr 94.0 0.14 3E-06 42.6 5.8 43 51-93 161-205 (219)
369 COG3684 LacD Tagatose-1,6-bisp 94.0 0.9 1.9E-05 38.8 10.5 124 54-192 147-296 (306)
370 cd00953 KDG_aldolase KDG (2-ke 94.0 0.48 1E-05 40.5 9.2 92 76-172 24-120 (279)
371 PF04476 DUF556: Protein of un 93.9 1.7 3.7E-05 36.5 12.0 135 54-192 40-197 (235)
372 cd02811 IDI-2_FMN Isopentenyl- 93.9 0.96 2.1E-05 39.6 11.2 99 48-149 96-210 (326)
373 PF00218 IGPS: Indole-3-glycer 93.9 0.4 8.6E-06 40.7 8.4 71 76-152 72-142 (254)
374 TIGR01521 FruBisAldo_II_B fruc 93.9 1.9 4.2E-05 38.2 12.9 111 73-184 171-324 (347)
375 PF03932 CutC: CutC family; I 93.8 1 2.3E-05 36.9 10.5 49 45-93 31-93 (201)
376 PRK12457 2-dehydro-3-deoxyphos 93.8 0.87 1.9E-05 39.1 10.3 95 53-149 120-238 (281)
377 COG1954 GlpP Glycerol-3-phosph 93.8 0.26 5.7E-06 39.3 6.7 97 41-149 69-174 (181)
378 PRK12595 bifunctional 3-deoxy- 93.8 1 2.3E-05 40.1 11.3 96 53-151 215-325 (360)
379 TIGR03151 enACPred_II putative 93.7 0.75 1.6E-05 40.0 10.0 88 46-147 44-135 (307)
380 PRK08673 3-deoxy-7-phosphohept 93.7 1.3 2.9E-05 39.1 11.6 127 53-182 190-333 (335)
381 COG0352 ThiE Thiamine monophos 93.7 0.42 9E-06 39.5 7.9 78 55-150 56-133 (211)
382 TIGR02708 L_lactate_ox L-lacta 93.6 1 2.3E-05 40.2 10.9 92 55-149 122-257 (367)
383 cd04730 NPD_like 2-Nitropropan 93.6 1.3 2.8E-05 36.3 10.9 85 49-147 38-128 (236)
384 TIGR01740 pyrF orotidine 5'-ph 93.5 0.41 8.9E-06 39.2 7.8 42 54-96 40-87 (213)
385 TIGR01769 GGGP geranylgeranylg 93.5 0.18 3.9E-06 41.5 5.5 41 52-92 164-205 (205)
386 TIGR01768 GGGP-family geranylg 93.5 0.19 4.2E-06 41.8 5.7 42 52-93 166-209 (223)
387 PRK07259 dihydroorotate dehydr 93.5 1.1 2.3E-05 38.6 10.5 86 60-147 87-188 (301)
388 cd04740 DHOD_1B_like Dihydroor 93.5 1.2 2.7E-05 38.0 10.9 91 55-147 80-185 (296)
389 cd00957 Transaldolase_TalAB Tr 93.4 1.1 2.4E-05 39.2 10.5 88 64-156 148-251 (313)
390 PTZ00411 transaldolase-like pr 93.4 1.6 3.4E-05 38.6 11.6 88 64-156 160-263 (333)
391 KOG2550|consensus 93.3 0.44 9.6E-06 43.1 7.9 68 76-149 254-323 (503)
392 PRK12399 tagatose 1,6-diphosph 93.3 0.94 2E-05 39.7 9.8 67 119-192 240-312 (324)
393 PRK09196 fructose-1,6-bisphosp 93.3 2.3 5E-05 37.7 12.5 111 73-184 173-326 (347)
394 cd03315 MLE_like Muconate lact 93.3 0.84 1.8E-05 38.4 9.5 91 48-148 111-210 (265)
395 PRK08662 nicotinate phosphorib 93.2 0.83 1.8E-05 40.5 9.6 93 53-153 187-293 (343)
396 cd04737 LOX_like_FMN L-Lactate 93.2 1.4 3.1E-05 39.1 11.1 90 55-147 114-248 (351)
397 PLN02495 oxidoreductase, actin 93.2 1.2 2.6E-05 40.2 10.6 100 53-152 101-218 (385)
398 cd08205 RuBisCO_IV_RLP Ribulos 93.2 0.82 1.8E-05 40.9 9.6 114 38-152 103-234 (367)
399 PRK04161 tagatose 1,6-diphosph 93.2 1.1 2.4E-05 39.4 10.0 67 119-192 242-314 (329)
400 TIGR03569 NeuB_NnaB N-acetylne 93.2 2.5 5.5E-05 37.2 12.5 128 52-184 122-261 (329)
401 PRK07455 keto-hydroxyglutarate 93.1 0.63 1.4E-05 37.5 8.0 88 53-149 3-92 (187)
402 PRK13399 fructose-1,6-bisphosp 93.1 2.6 5.6E-05 37.5 12.4 112 73-185 173-327 (347)
403 cd02810 DHOD_DHPD_FMN Dihydroo 93.0 1.5 3.4E-05 37.2 10.8 92 55-148 88-196 (289)
404 PRK04169 geranylgeranylglycery 93.0 0.24 5.2E-06 41.5 5.6 42 52-93 171-214 (232)
405 PF01680 SOR_SNZ: SOR/SNZ fami 93.0 0.44 9.5E-06 38.5 6.7 81 54-146 61-143 (208)
406 PRK02227 hypothetical protein; 92.9 2.7 5.8E-05 35.4 11.7 130 55-191 41-196 (238)
407 TIGR01232 lacD tagatose 1,6-di 92.9 1.1 2.4E-05 39.2 9.8 67 119-192 241-313 (325)
408 PRK07188 nicotinate phosphorib 92.9 1.4 2.9E-05 39.3 10.5 97 54-153 191-315 (352)
409 PRK11572 copper homeostasis pr 92.6 0.83 1.8E-05 38.7 8.4 73 73-149 9-94 (248)
410 PLN02460 indole-3-glycerol-pho 92.6 0.32 7E-06 42.9 6.1 72 75-152 142-214 (338)
411 PRK06512 thiamine-phosphate py 92.6 1.2 2.7E-05 36.8 9.3 76 58-150 65-140 (221)
412 TIGR00262 trpA tryptophan synt 92.5 0.28 6E-06 41.6 5.4 42 52-93 186-228 (256)
413 cd04728 ThiG Thiazole synthase 92.4 0.32 6.9E-06 41.1 5.6 42 52-93 163-205 (248)
414 cd03316 MR_like Mandelate race 92.3 0.72 1.6E-05 40.5 8.0 90 49-148 172-270 (357)
415 TIGR02319 CPEP_Pphonmut carbox 92.3 1.4 3E-05 38.3 9.5 66 78-154 171-239 (294)
416 TIGR00640 acid_CoA_mut_C methy 92.3 1.6 3.5E-05 33.2 9.0 85 54-146 20-110 (132)
417 TIGR01362 KDO8P_synth 3-deoxy- 92.3 1.9 4.1E-05 36.7 10.0 92 53-149 106-222 (258)
418 COG0135 TrpF Phosphoribosylant 92.3 1.5 3.2E-05 36.2 9.2 97 50-151 84-186 (208)
419 TIGR02320 PEP_mutase phosphoen 92.2 2.7 5.8E-05 36.3 11.2 92 55-154 140-246 (285)
420 COG0284 PyrF Orotidine-5'-phos 92.2 1.7 3.7E-05 36.6 9.7 41 55-96 54-100 (240)
421 PRK13396 3-deoxy-7-phosphohept 92.2 1.9 4E-05 38.4 10.3 128 53-183 198-343 (352)
422 PF01884 PcrB: PcrB family; I 92.1 0.26 5.6E-06 41.3 4.6 41 53-93 171-212 (230)
423 PRK12309 transaldolase/EF-hand 92.1 2.5 5.3E-05 38.2 11.1 87 64-155 154-256 (391)
424 PRK07084 fructose-bisphosphate 92.0 6.1 0.00013 34.8 13.2 79 74-153 165-273 (321)
425 COG2876 AroA 3-deoxy-D-arabino 92.0 2.1 4.5E-05 36.7 9.9 92 54-148 143-249 (286)
426 TIGR03569 NeuB_NnaB N-acetylne 92.0 2.2 4.8E-05 37.6 10.5 76 53-139 78-153 (329)
427 PF00290 Trp_syntA: Tryptophan 92.0 0.28 6.1E-06 41.8 4.8 42 51-93 185-227 (259)
428 TIGR02320 PEP_mutase phosphoen 91.8 2.7 5.8E-05 36.3 10.7 94 55-148 69-189 (285)
429 PRK11320 prpB 2-methylisocitra 91.8 1.1 2.4E-05 38.8 8.4 82 64-147 16-112 (292)
430 PRK05198 2-dehydro-3-deoxyphos 91.8 2.1 4.6E-05 36.5 9.8 92 53-149 114-230 (264)
431 PRK00208 thiG thiazole synthas 91.7 0.44 9.5E-06 40.3 5.5 42 52-93 163-205 (250)
432 KOG4175|consensus 91.6 4.4 9.6E-05 33.5 11.1 111 42-154 72-241 (268)
433 PRK01222 N-(5'-phosphoribosyl) 91.5 3.6 7.9E-05 33.7 10.8 117 46-172 82-207 (210)
434 PRK12346 transaldolase A; Prov 91.4 3.1 6.7E-05 36.5 10.8 88 64-156 149-252 (316)
435 PF13714 PEP_mutase: Phosphoen 91.4 2.4 5.1E-05 35.6 9.7 82 64-147 8-104 (238)
436 cd06556 ICL_KPHMT Members of t 91.3 1.6 3.5E-05 36.7 8.7 83 64-147 11-108 (240)
437 TIGR00874 talAB transaldolase. 91.3 4.8 0.0001 35.3 11.8 88 64-156 148-251 (317)
438 TIGR00875 fsa_talC_mipB fructo 91.3 6.3 0.00014 32.5 12.0 84 52-146 39-127 (213)
439 PRK05269 transaldolase B; Prov 91.2 3.9 8.4E-05 35.9 11.2 88 64-156 150-253 (318)
440 PRK09427 bifunctional indole-3 90.8 0.55 1.2E-05 43.2 5.8 65 72-147 219-283 (454)
441 TIGR02317 prpB methylisocitrat 90.8 2.3 4.9E-05 36.8 9.3 82 64-147 12-107 (285)
442 TIGR02151 IPP_isom_2 isopenten 90.7 3.3 7.1E-05 36.4 10.4 99 48-149 97-211 (333)
443 COG0159 TrpA Tryptophan syntha 90.7 0.48 1E-05 40.5 4.9 41 52-93 193-234 (265)
444 TIGR03586 PseI pseudaminic aci 90.6 9 0.0002 33.8 13.0 127 53-184 124-260 (327)
445 PF03102 NeuB: NeuB family; I 90.6 2.8 6.1E-05 35.3 9.4 76 53-139 58-133 (241)
446 cd04743 NPD_PKS 2-Nitropropane 90.4 2.7 5.9E-05 36.9 9.5 88 45-147 35-129 (320)
447 TIGR00259 thylakoid_BtpA membr 90.3 0.84 1.8E-05 38.9 6.1 73 75-148 31-109 (257)
448 KOG3111|consensus 90.3 3.6 7.7E-05 33.7 9.3 114 53-177 102-220 (224)
449 smart00052 EAL Putative diguan 90.2 2.6 5.7E-05 33.9 8.9 89 54-146 137-229 (241)
450 cd06557 KPHMT-like Ketopantoat 90.2 2.4 5.3E-05 36.0 8.8 82 64-147 11-110 (254)
451 TIGR03586 PseI pseudaminic aci 90.2 3.6 7.7E-05 36.3 10.1 82 55-147 81-166 (327)
452 PRK00366 ispG 4-hydroxy-3-meth 89.9 1.3 2.8E-05 39.4 7.1 64 74-147 44-107 (360)
453 cd00956 Transaldolase_FSA Tran 89.6 3.5 7.5E-05 33.9 9.1 95 54-163 41-141 (211)
454 PLN02334 ribulose-phosphate 3- 89.5 6.4 0.00014 32.4 10.8 96 48-150 47-148 (229)
455 TIGR02317 prpB methylisocitrat 89.5 2.8 6.1E-05 36.2 8.8 66 78-154 167-235 (285)
456 cd04722 TIM_phosphate_binding 89.5 1.8 4E-05 33.4 7.2 74 75-150 15-93 (200)
457 PLN03033 2-dehydro-3-deoxyphos 89.4 4.5 9.7E-05 35.0 9.8 92 53-149 120-241 (290)
458 PRK00311 panB 3-methyl-2-oxobu 89.4 6.9 0.00015 33.4 11.0 90 55-147 6-113 (264)
459 TIGR00693 thiE thiamine-phosph 89.4 2.5 5.4E-05 33.7 8.0 80 54-151 44-126 (196)
460 cd00429 RPE Ribulose-5-phospha 89.3 6.1 0.00013 31.5 10.3 90 51-149 44-135 (211)
461 PRK13307 bifunctional formalde 89.3 5.9 0.00013 35.8 11.0 88 53-149 214-307 (391)
462 PRK11197 lldD L-lactate dehydr 89.1 0.81 1.8E-05 41.1 5.3 42 105-149 233-274 (381)
463 PRK09197 fructose-bisphosphate 88.9 8 0.00017 34.4 11.3 81 73-153 188-284 (350)
464 PF13714 PEP_mutase: Phosphoen 88.9 4.3 9.4E-05 34.1 9.3 65 78-154 161-225 (238)
465 TIGR02319 CPEP_Pphonmut carbox 88.9 2.3 5E-05 36.9 7.9 82 64-147 15-111 (294)
466 PF00563 EAL: EAL domain; Int 88.8 1.8 3.8E-05 34.9 6.8 88 54-146 138-229 (236)
467 PRK11320 prpB 2-methylisocitra 88.7 3.5 7.6E-05 35.7 8.9 66 78-154 172-240 (292)
468 PRK13111 trpA tryptophan synth 88.7 1 2.3E-05 38.2 5.5 45 48-93 184-229 (258)
469 PLN02858 fructose-bisphosphate 88.6 13 0.00029 38.9 14.3 111 74-184 1251-1375(1378)
470 cd04736 MDH_FMN Mandelate dehy 88.5 1 2.2E-05 40.2 5.6 41 105-148 224-264 (361)
471 COG1411 Uncharacterized protei 88.3 0.97 2.1E-05 37.2 4.8 48 104-153 168-215 (229)
472 TIGR02321 Pphn_pyruv_hyd phosp 88.2 6.1 0.00013 34.2 10.0 69 78-154 172-241 (290)
473 cd06556 ICL_KPHMT Members of t 88.1 5.8 0.00013 33.3 9.6 63 55-128 63-134 (240)
474 PRK01362 putative translaldola 88.1 14 0.0003 30.6 12.2 83 53-146 40-127 (214)
475 TIGR03217 4OH_2_O_val_ald 4-hy 88.0 4.5 9.7E-05 35.6 9.2 75 76-150 28-109 (333)
476 TIGR00674 dapA dihydrodipicoli 87.8 14 0.00031 31.4 12.0 39 55-93 56-101 (285)
477 TIGR00736 nifR3_rel_arch TIM-b 87.7 1.4 3E-05 36.9 5.6 44 49-92 175-220 (231)
478 TIGR01520 FruBisAldo_II_A fruc 87.7 9.4 0.0002 34.1 11.0 81 73-153 195-292 (357)
479 COG2513 PrpB PEP phosphonomuta 87.7 3.8 8.2E-05 35.4 8.3 83 64-148 17-113 (289)
480 PF00701 DHDPS: Dihydrodipicol 87.5 8.7 0.00019 32.7 10.6 39 55-93 59-104 (289)
481 PRK13305 sgbH 3-keto-L-gulonat 87.4 0.65 1.4E-05 38.5 3.4 97 73-176 117-213 (218)
482 PRK13802 bifunctional indole-3 87.4 6.3 0.00014 38.3 10.4 71 76-152 74-144 (695)
483 PF01680 SOR_SNZ: SOR/SNZ fami 87.3 14 0.0003 30.0 10.7 81 62-148 12-100 (208)
484 PRK02227 hypothetical protein; 87.2 4 8.7E-05 34.4 8.0 75 73-149 8-88 (238)
485 COG0821 gcpE 1-hydroxy-2-methy 87.1 2.5 5.4E-05 37.3 6.9 65 74-148 38-102 (361)
486 PF04309 G3P_antiterm: Glycero 87.0 0.27 5.9E-06 39.4 0.9 46 48-93 124-170 (175)
487 COG0134 TrpC Indole-3-glycerol 86.9 6 0.00013 33.7 8.9 68 76-149 70-137 (254)
488 cd00564 TMP_TenI Thiamine mono 86.8 2 4.4E-05 33.6 5.9 45 49-93 135-179 (196)
489 COG1954 GlpP Glycerol-3-phosph 86.7 1.7 3.7E-05 34.8 5.2 45 49-93 129-174 (181)
490 cd00946 FBP_aldolase_IIA Class 86.7 11 0.00025 33.4 10.9 81 73-153 183-280 (345)
491 COG1304 idi Isopentenyl diphos 86.6 0.25 5.4E-06 44.1 0.5 116 13-140 126-269 (360)
492 TIGR01037 pyrD_sub1_fam dihydr 86.5 1.1 2.5E-05 38.4 4.6 40 53-92 223-263 (300)
493 PRK13396 3-deoxy-7-phosphohept 86.5 7.2 0.00016 34.7 9.6 85 52-148 153-242 (352)
494 COG2185 Sbm Methylmalonyl-CoA 86.5 8.2 0.00018 30.0 8.8 90 53-147 29-121 (143)
495 PRK05286 dihydroorotate dehydr 86.2 11 0.00024 33.2 10.8 97 55-151 127-248 (344)
496 KOG0538|consensus 86.1 3.5 7.5E-05 36.2 7.2 42 105-149 211-252 (363)
497 TIGR01858 tag_bisphos_ald clas 85.9 1.9 4.1E-05 37.2 5.6 52 42-93 178-231 (282)
498 TIGR02321 Pphn_pyruv_hyd phosp 85.9 7.9 0.00017 33.5 9.4 82 64-147 14-109 (290)
499 PRK00112 tgt queuine tRNA-ribo 85.9 3.8 8.3E-05 36.6 7.7 74 75-152 198-272 (366)
500 PRK13397 3-deoxy-7-phosphohept 85.9 9.8 0.00021 32.3 9.7 85 52-148 67-156 (250)
No 1
>KOG0538|consensus
Probab=100.00 E-value=7.7e-38 Score=263.68 Aligned_cols=184 Identities=58% Similarity=0.961 Sum_probs=172.4
Q ss_pred cccCCcceecccCCCcccccCCCCcchhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEe
Q psy16780 12 CLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMV 91 (202)
Q Consensus 12 ~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v 91 (202)
+++|+.+.++||......+-+....++++.+++.+.||.++|+.|+|+++.++.|+++|++++.|+|+.+.++|+++|+|
T Consensus 171 f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIV 250 (363)
T KOG0538|consen 171 FSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIV 250 (363)
T ss_pred ccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEE
Confidence 57899999999987654333223568899999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780 92 SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI 171 (202)
Q Consensus 92 ~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~ 171 (202)
|||||||+|..+.++++|+++.+++.+++||+.+||||+|.|++||+++||.+|.+|||++++++++|..+|+++++.++
T Consensus 251 SNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~ 330 (363)
T KOG0538|consen 251 SNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILR 330 (363)
T ss_pred eCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 172 NEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 172 ~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
+|++..|++.||++++|+.+.++.
T Consensus 331 ~efe~tmaLsGc~sv~ei~~~~v~ 354 (363)
T KOG0538|consen 331 DEFELTMALSGCRSVKEITRNHVL 354 (363)
T ss_pred HHHHHHHHHhCCCchhhhCcccee
Confidence 999999999999999999988643
No 2
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.3e-33 Score=248.40 Aligned_cols=159 Identities=47% Similarity=0.836 Sum_probs=143.6
Q ss_pred cchhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780 36 SSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA 115 (202)
Q Consensus 36 ~~~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 115 (202)
....+++.+.+.|+.++|+.|+++++.+++||+||+++++++++.+.++|+|+|+|+|||||++|+++++++.|.++++.
T Consensus 197 ~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~ 276 (356)
T PF01070_consen 197 GAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAA 276 (356)
T ss_dssp TCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHH
T ss_pred chhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhh
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780 116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194 (202)
Q Consensus 116 ~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~ 194 (202)
+++++|||++||||++.|++|++++||++|++||||++++...|++++.++++.|++||+..|.++|+++++||+++.+
T Consensus 277 ~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~ 355 (356)
T PF01070_consen 277 VGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRSLL 355 (356)
T ss_dssp HTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGE
T ss_pred hcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhc
Confidence 8779999999999999999999999999999999999998889999999999999999999999999999999998865
No 3
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=3.4e-32 Score=238.99 Aligned_cols=158 Identities=58% Similarity=1.010 Sum_probs=149.3
Q ss_pred hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780 38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
+...+.....|+.++|+.|+|+|+.+++||++|++.+.++++.+.++|+|+|+|+||||+++++.+++++.|.++++.+.
T Consensus 198 ~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~ 277 (367)
T PLN02493 198 GLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQ 277 (367)
T ss_pred hHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhC
Confidence 44556777889999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
+++|||++||||++.|++|++++||++|++||+|++++...|.+++.++++.++.||+..|.++|++++.++++..+.
T Consensus 278 ~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~ 355 (367)
T PLN02493 278 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHIT 355 (367)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhh
Confidence 789999999999999999999999999999999999998999999999999999999999999999999999887653
No 4
>PLN02979 glycolate oxidase
Probab=100.00 E-value=4.3e-32 Score=236.98 Aligned_cols=158 Identities=58% Similarity=1.010 Sum_probs=149.2
Q ss_pred hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780 38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
+...+.....||.++|+.|+|+|+.+++||++|++.+.++|+.+.++|+|+|+|+||||+++++.+++++.|.++++.+.
T Consensus 197 ~~~~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~ 276 (366)
T PLN02979 197 GLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQ 276 (366)
T ss_pred hHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhC
Confidence 44556777889999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
+++|||++|||+++.|++|++++||++|++||++++++...|.+++.++++.+++||+..|.++|+++++++.+..+.
T Consensus 277 ~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~ 354 (366)
T PLN02979 277 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHIT 354 (366)
T ss_pred CCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhh
Confidence 789999999999999999999999999999999999988999999999999999999999999999999999887653
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=6.5e-32 Score=237.36 Aligned_cols=154 Identities=38% Similarity=0.651 Sum_probs=147.3
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~ 125 (202)
..++.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||+++++++++++.|.++++++++++|||++
T Consensus 210 ~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d 289 (367)
T TIGR02708 210 SAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD 289 (367)
T ss_pred ccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee
Confidence 34688999999999999999999999999999999999999999999999999999999999999998888778999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccccccc
Q psy16780 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199 (202)
Q Consensus 126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~~ 199 (202)
|||+++.|++|++++||++|++|||+++++...|.+++.++++.|+.||+..|.++|+++++||++.++.+..|
T Consensus 290 GGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~ 363 (367)
T TIGR02708 290 SGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY 363 (367)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCCC
Confidence 99999999999999999999999999999989999999999999999999999999999999999999988776
No 6
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.98 E-value=3.3e-31 Score=234.22 Aligned_cols=155 Identities=46% Similarity=0.805 Sum_probs=146.3
Q ss_pred hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.....+...|+.++|+.|+++++.+++||++|++.+.++++.+.++|+|+|+|+||||++.+++++++..|.++++.+.+
T Consensus 228 ~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~ 307 (383)
T cd03332 228 VARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGD 307 (383)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcC
Confidence 33445556799999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~ 193 (202)
++|||++|||+++.|++|++++||++|++||+|++++...|.+++.++++.++.||+..|.++|+++++||++..
T Consensus 308 ~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 308 RLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred CCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 899999999999999999999999999999999999889999999999999999999999999999999998764
No 7
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.98 E-value=3.2e-31 Score=233.98 Aligned_cols=156 Identities=42% Similarity=0.763 Sum_probs=147.6
Q ss_pred HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
.+.....||.++|+.|++|++.+++||++|++.+.++++.+.++|+|+|+|+|||||++++.+++...|.++++.+..++
T Consensus 222 ~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~ 301 (381)
T PRK11197 222 GWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDI 301 (381)
T ss_pred HHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCC
Confidence 45666789999999999999999999999999999999999999999999999999999988889999999988776689
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH 196 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~ 196 (202)
|||++|||+++.|++|++++||++|++||+|++++...|.+++.++++.|++||+..|.++|+++++||++..++.
T Consensus 302 ~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~ 377 (381)
T PRK11197 302 TILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQ 377 (381)
T ss_pred eEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcc
Confidence 9999999999999999999999999999999999989999999999999999999999999999999999887643
No 8
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.98 E-value=8.7e-31 Score=229.80 Aligned_cols=150 Identities=47% Similarity=0.804 Sum_probs=142.9
Q ss_pred hHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 39 LLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 39 ~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
...+...++|+.++|+.|++|++.++.|+++|++.++++++.+.++|+|+|+|+|||||++++.+++++.+.++++.+
T Consensus 211 ~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~-- 288 (361)
T cd04736 211 QAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT-- 288 (361)
T ss_pred HHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--
Confidence 445666789999999999999999999999999999999999999999999999999999999889999999998877
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~ 190 (202)
++|||++|||+++.|++|++++||++|++||||++++...|.+++.++++.|++||+..|.++|+++++||.
T Consensus 289 ~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 289 YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 599999999999999999999999999999999999888999999999999999999999999999999985
No 9
>PLN02535 glycolate oxidase
Probab=99.97 E-value=1.7e-30 Score=228.30 Aligned_cols=159 Identities=55% Similarity=0.954 Sum_probs=149.7
Q ss_pred hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780 38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
++..+.....|+.++|+.|+++++.+++||++|++.++++++.+.++|+|+|+++||||++++.+++++..+.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~ 276 (364)
T PLN02535 197 GLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVG 276 (364)
T ss_pred cHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHh
Confidence 45567777889999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH 196 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~ 196 (202)
.++|||++|||+++.|++|++++||++|++||+|++++...|.+++.+.++.+++||+..|.++|+.+++||++..+.+
T Consensus 277 ~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~ 355 (364)
T PLN02535 277 GRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRT 355 (364)
T ss_pred cCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccc
Confidence 6899999999999999999999999999999999999888999999999999999999999999999999999987653
No 10
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.97 E-value=2.1e-30 Score=227.26 Aligned_cols=149 Identities=45% Similarity=0.767 Sum_probs=142.0
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~ 125 (202)
..++.++|+.++++++.+++||++|++.++++++.+.++|+|+|+|+||||+++++++++++.++++++++.+++|||++
T Consensus 203 ~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 203 AAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred hccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence 45778899999999999999999999999999999999999999999999999999998999999998888778999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194 (202)
Q Consensus 126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~ 194 (202)
|||+++.|++|++++||++|++||++++++...|.+++.++++.+++||+.+|.++|+++++|+++.++
T Consensus 283 GGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 283 SGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 999999999999999999999999999999899999999999999999999999999999999987653
No 11
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.97 E-value=8.6e-31 Score=229.90 Aligned_cols=159 Identities=44% Similarity=0.656 Sum_probs=151.1
Q ss_pred HHHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780 40 LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119 (202)
Q Consensus 40 ~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 119 (202)
.++.....+|..+|+.+.+|++.+..|+++|++.++++++.+.+.|+++|.++||||+++|+++++.++|++++++++++
T Consensus 194 ~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 194 AEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred HHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCC
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccccc
Q psy16780 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHET 198 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~~~ 198 (202)
++|++|||||+|.|++||+++||++|++||||++++...|.++|.+.++.+++||+..|.++|+++++||++.+++...
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877543
No 12
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.97 E-value=7.4e-29 Score=217.21 Aligned_cols=151 Identities=50% Similarity=0.825 Sum_probs=140.0
Q ss_pred HHhhhccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hC
Q psy16780 41 AYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VG 117 (202)
Q Consensus 41 ~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~ 117 (202)
.++....|+..+|+.|+++++.+++||++|++.++++++.+.++|+|+|+|+||||++++..++++..|.++++. +.
T Consensus 190 ~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~ 269 (344)
T cd02922 190 RAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVF 269 (344)
T ss_pred HHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 345556788899999999999999999999999999999999999999999999999999888888888888764 34
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~ 191 (202)
+++|||++|||+++.|++|++++||++|++||+|++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 57999999999999999999999999999999999998888999999999999999999999999999999975
No 13
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.96 E-value=2.1e-28 Score=215.22 Aligned_cols=182 Identities=24% Similarity=0.379 Sum_probs=156.4
Q ss_pred ccCCcceecccCCCcc----ccc-----CCCCcchh-------HHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780 13 LVLSQYLLANFSGKLS----QLS-----NTSDSSSL-------LAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI-- 72 (202)
Q Consensus 13 ~~p~~~~~~n~~~~~~----~~~-----~~~~~~~~-------~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~-- 72 (202)
..|++++++|+++.+. ++. +++.++++ |+.++++++++|. .+.++++++.+++||++|++
T Consensus 117 ~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~ 196 (352)
T PRK05437 117 VAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGF 196 (352)
T ss_pred HCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 4699999999999754 222 24445443 5778999998873 57999999999999999998
Q ss_pred -cCHHHHHHHHHcCCcEEEeeccCcCCC------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 73 -LTAEDAKIGVEMGASAIMVSNHGGRQL------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
.+.++++.+.++|+|+|+|+|+||+.+ +++.++...+.++++.+ .++|||++|||+++.|
T Consensus 197 g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~d 275 (352)
T PRK05437 197 GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLD 275 (352)
T ss_pred CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHH
Confidence 789999999999999999999887431 33567788888887763 3799999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 134 ~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
+.|++++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|+++++||++.+++
T Consensus 276 v~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~ 337 (352)
T PRK05437 276 IAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVPLV 337 (352)
T ss_pred HHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEE
Confidence 99999999999999999999877889999999999999999999999999999999998654
No 14
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.96 E-value=2.2e-28 Score=213.82 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=153.5
Q ss_pred ccCCcceecccCCCccccc---------CCCCcchh-------HHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780 13 LVLSQYLLANFSGKLSQLS---------NTSDSSSL-------LAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI-- 72 (202)
Q Consensus 13 ~~p~~~~~~n~~~~~~~~~---------~~~~~~~~-------~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~-- 72 (202)
..|+.+.++|+++.+..+. ++++++++ |+.++++++++|. .+.++++++.+++||++|++
T Consensus 110 ~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~ 189 (333)
T TIGR02151 110 EAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGF 189 (333)
T ss_pred hCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 3799999999998654331 34555554 6778899998873 37999999999999999988
Q ss_pred -cCHHHHHHHHHcCCcEEEeeccCcCCC------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 73 -LTAEDAKIGVEMGASAIMVSNHGGRQL------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
.+.+.++.+.++|+|+|+|+|+||+.+ +++.++...+.++++ +..++|||++|||+++.|
T Consensus 190 g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~d 268 (333)
T TIGR02151 190 GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLD 268 (333)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHH
Confidence 789999999999999999999887642 224455566777655 223799999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 134 VFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 134 ~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
+.|++++|||+|++||+|+......|++++.++++.+.+||+.+|..+|+++++||++.+++
T Consensus 269 i~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~ 330 (333)
T TIGR02151 269 VAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVPLV 330 (333)
T ss_pred HHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCCeE
Confidence 99999999999999999998876689999999999999999999999999999999998764
No 15
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.96 E-value=6.4e-28 Score=210.31 Aligned_cols=177 Identities=25% Similarity=0.379 Sum_probs=148.7
Q ss_pred ccCCcceecccCCCcc----ccc-----CCCCcch-------hHHHhhhccCcccc--HHHHHHHHHhcCCCEEEEec--
Q psy16780 13 LVLSQYLLANFSGKLS----QLS-----NTSDSSS-------LLAYITSQLDETIN--WSDVTWLKTITKLPIVLKGI-- 72 (202)
Q Consensus 13 ~~p~~~~~~n~~~~~~----~~~-----~~~~~~~-------~~~~~~~~~d~~~~--~~~i~~i~~~~~~Pv~vK~~-- 72 (202)
-.|++++++|+++.+. .+. +++++++ .|+..++++++++. .+.|+++++.+++||++|++
T Consensus 109 ~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~ 188 (326)
T cd02811 109 APPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGF 188 (326)
T ss_pred hCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 4678999999998652 222 2344444 45778888988873 37899999999999999998
Q ss_pred -cCHHHHHHHHHcCCcEEEeeccCcCCC--------------------CCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 73 -LTAEDAKIGVEMGASAIMVSNHGGRQL--------------------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 73 -~~~~~a~~l~~aG~d~I~v~~~gg~~~--------------------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
.+.++++.+.++|+|+|+++|+||+.+ +++.++...+.++++.+. ++|||++|||+++
T Consensus 189 g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~ 267 (326)
T cd02811 189 GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNG 267 (326)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCH
Confidence 789999999999999999999888531 124456677788776653 7999999999999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~ 191 (202)
.|++|++++|||+|++||+|++++.. |.+++.++++.|.+||+.+|.++|+++++||++
T Consensus 268 ~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 268 LDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred HHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 99999999999999999999998656 999999999999999999999999999999974
No 16
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.96 E-value=8.3e-28 Score=207.31 Aligned_cols=141 Identities=56% Similarity=0.974 Sum_probs=133.9
Q ss_pred ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
+.++.++++++.+++||++|++.++++++.+.++|+|+|+++||||++.+++++++..+.++++.+..++|||++|||++
T Consensus 159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999888865799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780 131 GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~ 191 (202)
+.|++|++++|||+|++||+|++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus 239 ~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 239 GTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999988788999999999999999999999999999999863
No 17
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.91 E-value=2.2e-23 Score=185.81 Aligned_cols=157 Identities=27% Similarity=0.278 Sum_probs=132.3
Q ss_pred HHHhhhccCcccc-----HHHHHHHHHhcC-CCEEEEecc--CHHHHHHHHHcC-CcEEEeeccCc-CC-------CCCc
Q psy16780 40 LAYITSQLDETIN-----WSDVTWLKTITK-LPIVLKGIL--TAEDAKIGVEMG-ASAIMVSNHGG-RQ-------LDYV 102 (202)
Q Consensus 40 ~~~~~~~~d~~~~-----~~~i~~i~~~~~-~Pv~vK~~~--~~~~a~~l~~aG-~d~I~v~~~gg-~~-------~~~~ 102 (202)
++.+++..++++. .+.|+++|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++| +. .+++
T Consensus 184 ~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g 263 (392)
T cd02808 184 VDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVG 263 (392)
T ss_pred ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCC
Confidence 4678888888885 679999999998 999999985 466665555555 99999999854 32 2356
Q ss_pred cchHHHHHHHHHHh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-------------------
Q psy16780 103 PASIEALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS------------------- 158 (202)
Q Consensus 103 ~~~~~~l~~i~~~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~------------------- 158 (202)
.|+...|.++++.+ +.++|||++|||+++.|++|++++|||+|.+||+|++++.|.
T Consensus 264 ~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~ 343 (392)
T cd02808 264 LPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDP 343 (392)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCCh
Confidence 78888888887655 347999999999999999999999999999999999876443
Q ss_pred ----------ChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780 159 ----------GKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH 196 (202)
Q Consensus 159 ----------G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~~~ 196 (202)
|.+++.++++.+.+||+.+|..+|++++++|++.+++.
T Consensus 344 ~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 344 ELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhhc
Confidence 67889999999999999999999999999999988764
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.89 E-value=1.3e-22 Score=176.28 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=143.4
Q ss_pred chhhhhhccccccCCcceecccCCCccccc-----CCCCc----chhHHHhhhccCccccHHHHHHHHHhcC-CCEEEEe
Q psy16780 2 DIYWMKSSLVCLVLSQYLLANFSGKLSQLS-----NTSDS----SSLLAYITSQLDETINWSDVTWLKTITK-LPIVLKG 71 (202)
Q Consensus 2 ~~~~~~~~~~~~~p~~~~~~n~~~~~~~~~-----~~~~~----~~~~~~~~~~~d~~~~~~~i~~i~~~~~-~Pv~vK~ 71 (202)
+++.-++..+...|+++ ++|......++. ..+++ +.++. -.+.++.+...+.|++||+.++ +||++|.
T Consensus 70 ~~e~~~~~~r~~~~~~l-~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~i-D~a~gh~~~~~e~I~~ir~~~p~~~vi~g~ 147 (326)
T PRK05458 70 DPEARIPFIKDMHEQGL-IASISVGVKDDEYDFVDQLAAEGLTPEYITI-DIAHGHSDSVINMIQHIKKHLPETFVIAGN 147 (326)
T ss_pred CHHHHHHHHHhcccccc-EEEEEecCCHHHHHHHHHHHhcCCCCCEEEE-ECCCCchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 44444444455577777 888876543332 12233 33321 1223677778889999999985 8999998
Q ss_pred ccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccch--HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 72 ILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPAS--IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~--~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
+.+.++++.+.++|+|++.+++++|+.. ..+.++ +..+.++++.+ ++|||++|||+++.|++|++++||+
T Consensus 148 V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~ 225 (326)
T PRK05458 148 VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGAT 225 (326)
T ss_pred cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCC
Confidence 9999999999999999999999988542 123454 34588887776 7999999999999999999999999
Q ss_pred EEEEcHHHHH------------------Hh-----hh-------cChH-------HHHHHHHHHHHHHHHHHHHhCCCCH
Q psy16780 144 MVFVGRPALW------------------GL-----AH-------SGKS-------GVRKVLDILINEFDQALALSGCTSV 186 (202)
Q Consensus 144 ~V~ig~~~l~------------------~~-----~~-------~G~~-------~v~~~i~~l~~~L~~~m~~~G~~~i 186 (202)
+||+|++|+. .. .. +|.+ .+.+++..+..+|+..|.++|+.++
T Consensus 226 aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i 305 (326)
T PRK05458 226 MVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDL 305 (326)
T ss_pred EEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 9999999981 11 01 2333 5889999999999999999999999
Q ss_pred Hhhhhcccc
Q psy16780 187 GEIQREMVV 195 (202)
Q Consensus 187 ~el~~~~~~ 195 (202)
.||++..++
T Consensus 306 ~el~~~~~v 314 (326)
T PRK05458 306 DAIRKVDYV 314 (326)
T ss_pred HHHhcCCEE
Confidence 999976444
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.86 E-value=1e-20 Score=163.47 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=125.0
Q ss_pred hhccCccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEee-----ccCcCCCCCcc-chHHHHHHHHHHh
Q psy16780 44 TSQLDETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVS-----NHGGRQLDYVP-ASIEALPEIAKAV 116 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~ 116 (202)
...|+.+...+.|++||+.++-+.++|+ +.+++.++.++++|||+|.|+ ++++++.++.. |++.++.++++++
T Consensus 129 ~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa 208 (343)
T TIGR01305 129 VANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAA 208 (343)
T ss_pred CCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHh
Confidence 3477888889999999999976666676 899999999999999999998 45666777654 8999999998887
Q ss_pred CC-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------c
Q psy16780 117 GH-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------S 158 (202)
Q Consensus 117 ~~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------~ 158 (202)
.. ++|||++|||+++.|++||+++|||+||+|+.|.-. +.+ +
T Consensus 209 ~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~E 288 (343)
T TIGR01305 209 HGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASE 288 (343)
T ss_pred ccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCccccccccc
Confidence 65 799999999999999999999999999999866521 000 1
Q ss_pred Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 159 GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 159 G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
|. -.+.+++.++..+|+..|.++|..+++||+++
T Consensus 289 G~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 289 GKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred CceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 10 12788999999999999999999999999765
No 20
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.84 E-value=5.7e-20 Score=159.22 Aligned_cols=189 Identities=19% Similarity=0.160 Sum_probs=136.9
Q ss_pred hhhhhccccccCCcceecccCCCccccc-C----CCCcchh--H--HHhhhccCccccHHHHHHHHHhcCCCEE-EEecc
Q psy16780 4 YWMKSSLVCLVLSQYLLANFSGKLSQLS-N----TSDSSSL--L--AYITSQLDETINWSDVTWLKTITKLPIV-LKGIL 73 (202)
Q Consensus 4 ~~~~~~~~~~~p~~~~~~n~~~~~~~~~-~----~~~~~~~--~--~~~~~~~d~~~~~~~i~~i~~~~~~Pv~-vK~~~ 73 (202)
+|.+ ..+...|.++ +.|+......++ + ..++ ++ . ..-...|+.....+.|+++|+.++.|.+ .|.+.
T Consensus 70 ~~~s-fvrk~k~~~L-~v~~SvG~t~e~~~r~~~lv~a-~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~ 146 (321)
T TIGR01306 70 SRIP-FIKDMQERGL-FASISVGVKACEYEFVTQLAEE-ALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG 146 (321)
T ss_pred HHHH-HHHhcccccc-EEEEEcCCCHHHHHHHHHHHhc-CCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3444 3444456554 777776654433 1 1111 11 0 0123466778889999999999988854 44589
Q ss_pred CHHHHHHHHHcCCcEEEeeccCcCCC--------CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780 74 TAEDAKIGVEMGASAIMVSNHGGRQL--------DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV 145 (202)
Q Consensus 74 ~~~~a~~l~~aG~d~I~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V 145 (202)
+.+.++.+.++|+|+|.|+.++|+.- ....+.+.++.++++.+ ++|||++|||+++.|++|||++|||+|
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~V 224 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMV 224 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEE
Confidence 99999999999999999997655421 11123566888888876 799999999999999999999999999
Q ss_pred EEcHHHHHH--------------------hh--h--------cC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHh
Q psy16780 146 FVGRPALWG--------------------LA--H--------SG-------KSGVRKVLDILINEFDQALALSGCTSVGE 188 (202)
Q Consensus 146 ~ig~~~l~~--------------------~~--~--------~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~e 188 (202)
|+||+|.-. +. . +| .-.+.+++.++..+||..|.++|+.+++|
T Consensus 225 mig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~ 304 (321)
T TIGR01306 225 MIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDS 304 (321)
T ss_pred eechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 999988521 00 0 11 01378999999999999999999999999
Q ss_pred hhhcccccc
Q psy16780 189 IQREMVVHE 197 (202)
Q Consensus 189 l~~~~~~~~ 197 (202)
|++..++..
T Consensus 305 ~~~~~~~~~ 313 (321)
T TIGR01306 305 LRTVDYVIV 313 (321)
T ss_pred HhhCCEEEE
Confidence 997755543
No 21
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.81 E-value=3.6e-19 Score=155.27 Aligned_cols=180 Identities=19% Similarity=0.203 Sum_probs=128.3
Q ss_pred hhhhhhcccc-ccCCcceecccCCCccccc-------CCCCcchhHHHhhh-ccCc--------cccHHHHHHHHHhcCC
Q psy16780 3 IYWMKSSLVC-LVLSQYLLANFSGKLSQLS-------NTSDSSSLLAYITS-QLDE--------TINWSDVTWLKTITKL 65 (202)
Q Consensus 3 ~~~~~~~~~~-~~p~~~~~~n~~~~~~~~~-------~~~~~~~~~~~~~~-~~d~--------~~~~~~i~~i~~~~~~ 65 (202)
.+|++...+. ...+.++++|++.....+. +...+++++..+.. ..++ +...++++++++.+++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI 164 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence 3566655443 2346778899876432111 11223444332221 1122 2346799999999999
Q ss_pred CEEEEeccC----HHHHHHHHHcCCcEEEeeccCc-CCCC---------C---cc----chHHHHHHHHHHhCCCcEEEE
Q psy16780 66 PIVLKGILT----AEDAKIGVEMGASAIMVSNHGG-RQLD---------Y---VP----ASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 66 Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg-~~~~---------~---~~----~~~~~l~~i~~~~~~~ipiia 124 (202)
||++|++.+ .+.++.+.++|+|+|+++|+.. ...+ + ++ ..++.+.++++.+ ++|||+
T Consensus 165 Pv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig 242 (325)
T cd04739 165 PVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAA 242 (325)
T ss_pred CEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEE
Confidence 999998843 4678889999999999998631 1111 1 11 1234455665555 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 125 DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 125 ~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|||+|++|+.+++.+|||+|++||+++. +|+ .++..+.++|+.+|...|+++++|+++.
T Consensus 243 ~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 243 SGGVHDAEDVVKYLLAGADVVMTTSALLR----HGP----DYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred ECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCc----hHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999999999999999999999999986 466 4778999999999999999999999885
No 22
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.80 E-value=6.9e-19 Score=151.67 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=119.7
Q ss_pred hhhcc-CccccHHHHHHHHHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeeccCcCC--C------------CC--
Q psy16780 43 ITSQL-DETINWSDVTWLKTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNHGGRQ--L------------DY-- 101 (202)
Q Consensus 43 ~~~~~-d~~~~~~~i~~i~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~gg~~--~------------~~-- 101 (202)
....+ ||+...++++++++.+++||++|+..+. +.|+.+.++|+|+|++.|+.... . .+
T Consensus 139 ~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL 218 (310)
T COG0167 139 GRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL 218 (310)
T ss_pred hhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCc
Confidence 44555 8889999999999999999999998653 45788999999999999953211 0 11
Q ss_pred -c----cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780 102 -V----PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ 176 (202)
Q Consensus 102 -~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~ 176 (202)
| +.....++++++.+++++|||++|||.|++|+++.+.+||++|+++|++++ .|+ .+++.+.++|..
T Consensus 219 SG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~ 290 (310)
T COG0167 219 SGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLAR 290 (310)
T ss_pred CcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHH
Confidence 2 224556788888887789999999999999999999999999999999986 577 577899999999
Q ss_pred HHHHhCCCCHHhhhhcc
Q psy16780 177 ALALSGCTSVGEIQREM 193 (202)
Q Consensus 177 ~m~~~G~~~i~el~~~~ 193 (202)
+|...|+.+++|+++..
T Consensus 291 ~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 291 WLEEKGFESIQDIIGSA 307 (310)
T ss_pred HHHHcCCCCHHHHhchh
Confidence 99999999999999864
No 23
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.80 E-value=8.6e-19 Score=160.49 Aligned_cols=149 Identities=23% Similarity=0.329 Sum_probs=121.0
Q ss_pred hhccCccccHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-----C-CCCCccchHHHHHHHHHH
Q psy16780 44 TSQLDETINWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----R-QLDYVPASIEALPEIAKA 115 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-----~-~~~~~~~~~~~l~~i~~~ 115 (202)
.+.+......+.|+++|+.++ ++|+.+.+.+++.++.+.++|||+|.|++++| + +...+.|++.++.+++++
T Consensus 262 ~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 262 SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKA 341 (502)
T ss_pred CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHH
Confidence 344555566889999999886 45555558999999999999999999999888 4 455678888988888775
Q ss_pred h-------CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------
Q psy16780 116 V-------GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH----------- 157 (202)
Q Consensus 116 ~-------~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~----------- 157 (202)
+ +.++|||++|||+++.|++|||++|||+||+||+|.-. +.+
T Consensus 342 ~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~ 421 (502)
T PRK07107 342 RDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDL 421 (502)
T ss_pred HHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhcccccc
Confidence 4 22499999999999999999999999999999998631 100
Q ss_pred ---------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 158 ---------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 158 ---------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|. -.+.+++.++..+|+..|.++|..+++||+.+
T Consensus 422 ~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 422 GGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred ccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 010 12788999999999999999999999999866
No 24
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.79 E-value=3.2e-18 Score=149.81 Aligned_cols=131 Identities=20% Similarity=0.257 Sum_probs=106.7
Q ss_pred cHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCc-CCC---------CCc---c----chHHHHH
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGG-RQL---------DYV---P----ASIEALP 110 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg-~~~---------~~~---~----~~~~~l~ 110 (202)
.+++++++++.+++||++|+... .+.++.+.++|+|+|+++|+.. ... .++ + ..++.+.
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~ 232 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA 232 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH
Confidence 57899999999999999998743 4667889999999999988631 111 111 1 1234455
Q ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190 (202)
Q Consensus 111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~ 190 (202)
++++.+ ++|||++|||+|++|+.+++.+|||+|++||+++. +|+ ++++.+.++|+.+|...|+++++|++
T Consensus 233 ~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~ 302 (334)
T PRK07565 233 ILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR 302 (334)
T ss_pred HHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 565555 79999999999999999999999999999999986 455 57789999999999999999999998
Q ss_pred hc
Q psy16780 191 RE 192 (202)
Q Consensus 191 ~~ 192 (202)
+.
T Consensus 303 g~ 304 (334)
T PRK07565 303 GS 304 (334)
T ss_pred cc
Confidence 85
No 25
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.78 E-value=3.4e-18 Score=151.11 Aligned_cols=145 Identities=24% Similarity=0.324 Sum_probs=112.6
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC--------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG-------- 117 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-------- 117 (202)
.++.+.++++..++||+++.+.+.+.++.+.++|||+|.++.++|+. ...+.|.+.++.++++..+
T Consensus 175 ~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~ 254 (368)
T PRK08649 175 EPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGG 254 (368)
T ss_pred CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcC
Confidence 35556666666799999988999999999999999999886444421 1224567777776654321
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh-----------------cCh-------HHHHHHHH-----
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH-----------------SGK-------SGVRKVLD----- 168 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~-----------------~G~-------~~v~~~i~----- 168 (202)
.++|||++|||+++.|++|++++|||+||+|++|+....+ +|. -.+.+++.
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~ 334 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHL 334 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccc
Confidence 1599999999999999999999999999999999853211 111 13777877
Q ss_pred -----HHHHHHHHHHHHhCCCCHHhhhhccccc
Q psy16780 169 -----ILINEFDQALALSGCTSVGEIQREMVVH 196 (202)
Q Consensus 169 -----~l~~~L~~~m~~~G~~~i~el~~~~~~~ 196 (202)
++..+||..|.++|+.+++||++..+++
T Consensus 335 ~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 335 PDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 9999999999999999999999886654
No 26
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.78 E-value=8.2e-18 Score=144.59 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=110.9
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-cCCC---------------CCcc---
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-GRQL---------------DYVP--- 103 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g~~~---------------~~~~--- 103 (202)
.++++..++++++++.+++||++|+..+ .+.++.+.++|+|+|+++|+. |... .+++
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 216 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIK 216 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccc
Confidence 5778888999999999999999998743 355788999999999998741 2110 0111
Q ss_pred -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q psy16780 104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSG 182 (202)
Q Consensus 104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G 182 (202)
..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++. ++ .+++.++++|+.+|+..|
T Consensus 217 ~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g 285 (296)
T cd04740 217 PIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEG 285 (296)
T ss_pred hHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcC
Confidence 1345677777766 79999999999999999999999999999999985 45 577899999999999999
Q ss_pred CCCHHhhhhc
Q psy16780 183 CTSVGEIQRE 192 (202)
Q Consensus 183 ~~~i~el~~~ 192 (202)
+++++|+++.
T Consensus 286 ~~~~~~~~g~ 295 (296)
T cd04740 286 IKSIEELVGL 295 (296)
T ss_pred CCCHHHHhCc
Confidence 9999999863
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.77 E-value=4.9e-18 Score=146.27 Aligned_cols=136 Identities=24% Similarity=0.265 Sum_probs=111.0
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-cCCC------------C---Cccc-
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-GRQL------------D---YVPA- 104 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g~~~------------~---~~~~- 104 (202)
..+|++..++++++|+.+++||++|+..+ .+.++.+.++|+|+|+++|+- ++.. . .+++
T Consensus 139 ~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 139 GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 35788889999999999999999999854 355788999999999998742 2110 0 1121
Q ss_pred ---hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy16780 105 ---SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALS 181 (202)
Q Consensus 105 ---~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~ 181 (202)
.++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. + .+++.++++|+.+|...
T Consensus 219 ~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~-----p----~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 219 KPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR-----G----FAFKKIIEGLIAFLKAE 287 (300)
T ss_pred hHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC-----c----hHHHHHHHHHHHHHHHc
Confidence 235566777766 699999999999999999999999999999999862 2 57889999999999999
Q ss_pred CCCCHHhhhhc
Q psy16780 182 GCTSVGEIQRE 192 (202)
Q Consensus 182 G~~~i~el~~~ 192 (202)
|+++++|+++.
T Consensus 288 g~~~~~e~~g~ 298 (300)
T TIGR01037 288 GFTSIEELIGI 298 (300)
T ss_pred CCCCHHHHhCc
Confidence 99999999874
No 28
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.77 E-value=4.1e-18 Score=149.11 Aligned_cols=148 Identities=24% Similarity=0.322 Sum_probs=118.2
Q ss_pred hccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------CCCccchHHHHHHHHHHhC
Q psy16780 45 SQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------LDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~ 117 (202)
..++.+...+.++++|+.++ +||+++.+.|.+.++.|.++|||+|.|+-.+|.. .--+.|.+.++.++++...
T Consensus 129 a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~ 208 (352)
T PF00478_consen 129 AHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAAR 208 (352)
T ss_dssp SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhh
Confidence 46788888899999999985 9999999999999999999999999997665531 1225678888888766552
Q ss_pred -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------------hhh-------------
Q psy16780 118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------------LAH------------- 157 (202)
Q Consensus 118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------------~~~------------- 157 (202)
..+|||++|||+++.|++|||++|||+||+|+.|.-. +..
T Consensus 209 ~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~ 288 (352)
T PF00478_consen 209 DYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAED 288 (352)
T ss_dssp CTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTS
T ss_pred hccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccc
Confidence 3699999999999999999999999999999977621 000
Q ss_pred -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|. -.+.+++..|..+|+..|.++|+.+|+||+++
T Consensus 289 ~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~ 335 (352)
T PF00478_consen 289 KKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKK 335 (352)
T ss_dssp STSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHH
T ss_pred ccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence 111 22789999999999999999999999999987
No 29
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.77 E-value=4.5e-18 Score=154.86 Aligned_cols=148 Identities=26% Similarity=0.300 Sum_probs=122.1
Q ss_pred hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------CCccchHHHHHHHHHHhC
Q psy16780 45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------DYVPASIEALPEIAKAVG 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------~~~~~~~~~l~~i~~~~~ 117 (202)
..+++....+.+++|++.+ ++||++..+.|.+.++.+.++|+|+|.|+..+|+.- ..+.++...+.++++...
T Consensus 246 a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 246 AHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred CCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHH
Confidence 3578888899999999986 899999889999999999999999999998877531 235677777777654432
Q ss_pred -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH---------------------------hh-------------
Q psy16780 118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG---------------------------LA------------- 156 (202)
Q Consensus 118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~---------------------------~~------------- 156 (202)
..+|||++|||+++.|++|||++||++||+|+.|.-. +.
T Consensus 326 ~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~ 405 (475)
T TIGR01303 326 KLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRAR 405 (475)
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhc
Confidence 2699999999999999999999999999999987411 10
Q ss_pred ----hcChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 157 ----HSGKSG-----------VRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 157 ----~~G~~~-----------v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+|.++ +.+++.++..+|+..|.++|+.+++||+.+
T Consensus 406 ~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 406 KALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred cccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 022221 778999999999999999999999999876
No 30
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.77 E-value=4.7e-18 Score=146.90 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=121.6
Q ss_pred hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CC--CCccchHHHHHHHHHHh
Q psy16780 44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QL--DYVPASIEALPEIAKAV 116 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~--~~~~~~~~~l~~i~~~~ 116 (202)
...|+.+...+.|++||+.+ +++|+.+.+.|++.++.|+++|||+|.|+-.+|. +. --+.|.+.++.+++++.
T Consensus 130 ~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a 209 (346)
T PRK05096 130 VANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAA 209 (346)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHH
Confidence 34678888899999999988 6999999999999999999999999999766552 22 12467788887776654
Q ss_pred C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------c
Q psy16780 117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-----------------S 158 (202)
Q Consensus 117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-----------------~ 158 (202)
. ..+|||++|||+++.|++|||++|||+||+|+.|.-. +.+ +
T Consensus 210 ~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~E 289 (346)
T PRK05096 210 HGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAE 289 (346)
T ss_pred HHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCccccccccc
Confidence 3 3699999999999999999999999999999987521 100 0
Q ss_pred Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 159 GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 159 G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
|. -.+.+++.++..+|+..|.++|..+++||+++
T Consensus 290 G~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 290 GKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred CceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 10 12789999999999999999999999999765
No 31
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.77 E-value=1.2e-17 Score=144.04 Aligned_cols=135 Identities=23% Similarity=0.323 Sum_probs=111.6
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeecc-CcCC--C-------------CCc----
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNH-GGRQ--L-------------DYV---- 102 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~-gg~~--~-------------~~~---- 102 (202)
.++++..++++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .+.. . ..+
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~ 219 (301)
T PRK07259 140 TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIK 219 (301)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcc
Confidence 46788999999999999999999998543 4578899999999998763 1210 0 011
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhC
Q psy16780 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSG 182 (202)
Q Consensus 103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G 182 (202)
+..++.+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++ ++ .+++.++++++.+|...|
T Consensus 220 p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 220 PIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred cccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHHHcC
Confidence 12456677887777 79999999999999999999999999999999985 45 577899999999999999
Q ss_pred CCCHHhhhhc
Q psy16780 183 CTSVGEIQRE 192 (202)
Q Consensus 183 ~~~i~el~~~ 192 (202)
+++++|+++.
T Consensus 289 ~~~i~~~~g~ 298 (301)
T PRK07259 289 IKSIEEIVGI 298 (301)
T ss_pred CCCHHHHhCc
Confidence 9999999874
No 32
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.76 E-value=1.1e-17 Score=153.45 Aligned_cols=146 Identities=22% Similarity=0.263 Sum_probs=118.2
Q ss_pred hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc----CCCCC--cc---chHHHHHHHHH
Q psy16780 45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG----RQLDY--VP---ASIEALPEIAK 114 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg----~~~~~--~~---~~~~~l~~i~~ 114 (202)
+.|+....|+.|++||+.+ +.+|+++.+.+.++++.+.++|+|+|.+++|+| ++... +. .++..+.++++
T Consensus 269 ~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 269 SQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH
Confidence 4677778899999999988 589999999999999999999999999987665 22211 22 24445666655
Q ss_pred HhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh-----------------
Q psy16780 115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH----------------- 157 (202)
Q Consensus 115 ~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~----------------- 157 (202)
.. ++|||++|||+++.|++|||++||++|++|+.|... +.+
T Consensus 349 ~~--~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~ 426 (505)
T PLN02274 349 QH--GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTA 426 (505)
T ss_pred hc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCc
Confidence 54 799999999999999999999999999999998731 100
Q ss_pred -----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 158 -----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 158 -----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|. -.+.+++.+|..+|+..|.++|+.++.||+.+
T Consensus 427 ~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 427 KLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred ccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 111 12789999999999999999999999999866
No 33
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.76 E-value=8.8e-18 Score=153.79 Aligned_cols=148 Identities=24% Similarity=0.330 Sum_probs=121.3
Q ss_pred hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---CC---CCCccchHHHHHHHHHHh
Q psy16780 44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---RQ---LDYVPASIEALPEIAKAV 116 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~~---~~~~~~~~~~l~~i~~~~ 116 (202)
..+|+..+.++.|+++++.+ ++||+++.+.+.++++.+.++|+|+|.++.++| +. ...+.|++.++.++++..
T Consensus 261 ~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~ 340 (495)
T PTZ00314 261 SSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYA 340 (495)
T ss_pred cCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHH
Confidence 34678888899999999987 799999999999999999999999999965433 11 234667778877776654
Q ss_pred C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------c-----------
Q psy16780 117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------S----------- 158 (202)
Q Consensus 117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------~----------- 158 (202)
. .++|+|++|||+++.|++||+++||++||+|+.|... +.+ .
T Consensus 341 ~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~ 420 (495)
T PTZ00314 341 RERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENE 420 (495)
T ss_pred hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccc
Confidence 3 2699999999999999999999999999999988631 100 0
Q ss_pred ------Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780 159 ------GK-------SGVRKVLDILINEFDQALALSGCTSVGEIQR 191 (202)
Q Consensus 159 ------G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~ 191 (202)
|. -.+.+++.++..+|+..|.++|+.+|+||+.
T Consensus 421 ~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 421 TIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred ccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 2278999999999999999999999999987
No 34
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.76 E-value=1.4e-17 Score=152.35 Aligned_cols=147 Identities=25% Similarity=0.359 Sum_probs=121.3
Q ss_pred ccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-----CCC-CCccchHHHHHHHHHHhC-
Q psy16780 46 QLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQL-DYVPASIEALPEIAKAVG- 117 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-----~~~-~~~~~~~~~l~~i~~~~~- 117 (202)
.+++....+.++++++.+ ++||+++.+.+.++++.+.++|+|+|.++.++| +.. ..+.|+++++.++++..+
T Consensus 250 ~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~ 329 (486)
T PRK05567 250 HGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKK 329 (486)
T ss_pred CCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhcc
Confidence 455666788999999998 899999999999999999999999999865443 223 346788999988877653
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh--------------------
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH-------------------- 157 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~-------------------- 157 (202)
.++|||++|||+++.|++||+++|||+||+|++|... +.+
T Consensus 330 ~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~ 409 (486)
T PRK05567 330 YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAAD 409 (486)
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccccccccccccccc
Confidence 3699999999999999999999999999999987531 000
Q ss_pred ----cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 158 ----SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 158 ----~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|. -.+.+++.++..+|+..|.++|+.+++||+.+
T Consensus 410 ~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 410 KLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred ccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 010 13789999999999999999999999999855
No 35
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.76 E-value=1.1e-17 Score=145.92 Aligned_cols=149 Identities=25% Similarity=0.338 Sum_probs=120.3
Q ss_pred hccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C---CCCccchHHHHHHHHHHhC
Q psy16780 45 SQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q---LDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~---~~~~~~~~~~l~~i~~~~~ 117 (202)
..++++...+.++++++..+ +||++..+.+.+.++.+.++|+|+|.++..+|. . ...+.|++..+.++.+.+.
T Consensus 115 ~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 115 AHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence 45666667889999999874 899988889999999999999999999654332 1 2345678888888776653
Q ss_pred C-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhh---------------------------------------
Q psy16780 118 H-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH--------------------------------------- 157 (202)
Q Consensus 118 ~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~--------------------------------------- 157 (202)
. ++|||++|||+++.|+.|++++||++||+||.|+....+
T Consensus 195 ~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~ 274 (325)
T cd00381 195 DYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKK 274 (325)
T ss_pred hcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccccccccccc
Confidence 2 699999999999999999999999999999998842100
Q ss_pred ---cC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhcc
Q psy16780 158 ---SG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193 (202)
Q Consensus 158 ---~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~ 193 (202)
+| .-.+.+++..+..+||..|.++|+.+++||++..
T Consensus 275 ~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~ 320 (325)
T cd00381 275 LVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKA 320 (325)
T ss_pred ccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcC
Confidence 01 1137889999999999999999999999999873
No 36
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.76 E-value=1.5e-17 Score=148.01 Aligned_cols=149 Identities=21% Similarity=0.296 Sum_probs=119.8
Q ss_pred hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CCC-CccchHHHHHHHHHHh
Q psy16780 44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QLD-YVPASIEALPEIAKAV 116 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~~-~~~~~~~~l~~i~~~~ 116 (202)
.+.+++....+.++++|+.+ +.+|+++.+.|.+.++.+.++|+|+|.++..+|+ ..+ .+.|++..+.++++.+
T Consensus 173 ~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~ 252 (404)
T PRK06843 173 SAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC 252 (404)
T ss_pred CCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH
Confidence 44567777889999999988 7899999999999999999999999998644332 222 2456777776665554
Q ss_pred C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------------------
Q psy16780 117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------------------ 157 (202)
Q Consensus 117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------------------ 157 (202)
. .++|||++|||+++.|++||+++||++||+|++|... +.+
T Consensus 253 ~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~ 332 (404)
T PRK06843 253 KNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENN 332 (404)
T ss_pred hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccc
Confidence 2 2699999999999999999999999999999998741 000
Q ss_pred -------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 158 -------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 158 -------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
+|. -.+.+++.++..+|+..|.++|+.+|.||+.+
T Consensus 333 ~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 333 EPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred cccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 010 11788999999999999999999999999864
No 37
>PLN02826 dihydroorotate dehydrogenase
Probab=99.76 E-value=3.4e-17 Score=146.50 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=109.1
Q ss_pred CccccHHHHHHHHHh---------cCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccC-cC----------CCCC
Q psy16780 48 DETINWSDVTWLKTI---------TKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHG-GR----------QLDY 101 (202)
Q Consensus 48 d~~~~~~~i~~i~~~---------~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~g-g~----------~~~~ 101 (202)
+++...++++.+++. .++||+||+. .+.++ ++.+.++|+|+|+++|+. ++ +..+
T Consensus 237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~G 316 (409)
T PLN02826 237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAG 316 (409)
T ss_pred ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCC
Confidence 455556677777643 4689999996 34333 788899999999999852 11 0111
Q ss_pred ---cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780 102 ---VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEF 174 (202)
Q Consensus 102 ---~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L 174 (202)
|+ ...+.+.++++.+++++|||++|||.|++|+++.+.+||++|+++|+|++ +|+ .++..++++|
T Consensus 317 GlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL 388 (409)
T PLN02826 317 GLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAEL 388 (409)
T ss_pred CcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHH
Confidence 22 24567788888887789999999999999999999999999999999986 476 4778999999
Q ss_pred HHHHHHhCCCCHHhhhhcc
Q psy16780 175 DQALALSGCTSVGEIQREM 193 (202)
Q Consensus 175 ~~~m~~~G~~~i~el~~~~ 193 (202)
+.+|...|+++++|+++..
T Consensus 389 ~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 389 AACLERDGFKSIQEAVGAD 407 (409)
T ss_pred HHHHHHcCCCCHHHHhCcC
Confidence 9999999999999998753
No 38
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.75 E-value=9e-18 Score=149.03 Aligned_cols=183 Identities=15% Similarity=0.134 Sum_probs=131.8
Q ss_pred hhhhhhcccc--ccCCcceecccCCCccccc--------CCCCcchhHH-----Hh--------hhccCccccHHHHHHH
Q psy16780 3 IYWMKSSLVC--LVLSQYLLANFSGKLSQLS--------NTSDSSSLLA-----YI--------TSQLDETINWSDVTWL 59 (202)
Q Consensus 3 ~~~~~~~~~~--~~p~~~~~~n~~~~~~~~~--------~~~~~~~~~~-----~~--------~~~~d~~~~~~~i~~i 59 (202)
.+|+....++ ..|+.++++++......++ +...++++.. +. +-..+|+.+.++++++
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 4677765555 3688899999954222222 1111233321 11 1235778888899999
Q ss_pred HHhcCCCEEEEeccCH----HHHHHHHHcCCcEEEeeccCc--CCC----------------CCc---c----chHHHHH
Q psy16780 60 KTITKLPIVLKGILTA----EDAKIGVEMGASAIMVSNHGG--RQL----------------DYV---P----ASIEALP 110 (202)
Q Consensus 60 ~~~~~~Pv~vK~~~~~----~~a~~l~~aG~d~I~v~~~gg--~~~----------------~~~---~----~~~~~l~ 110 (202)
++.+++||++|+..+. +.++.+.++|+|+|++.|+-. ... .++ + .....+.
T Consensus 178 k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~ 257 (385)
T PLN02495 178 NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVM 257 (385)
T ss_pred HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHH
Confidence 9999999999998543 557889999999999998632 111 011 1 1222344
Q ss_pred HHHHHhC----CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCH
Q psy16780 111 EIAKAVG----HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSV 186 (202)
Q Consensus 111 ~i~~~~~----~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i 186 (202)
++++.+. .++|||++|||.+++|+++.+.+||++|++++++++ +|+ .+++.+.++|+.+|...|++++
T Consensus 258 ~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp----~vi~~i~~~L~~~m~~~G~~si 329 (385)
T PLN02495 258 AIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGY----PLVKNLCAELQDFMKKHNFSSI 329 (385)
T ss_pred HHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCc----HHHHHHHHHHHHHHHHcCCCCH
Confidence 4555542 259999999999999999999999999999999885 577 5778999999999999999999
Q ss_pred Hhhhhcc
Q psy16780 187 GEIQREM 193 (202)
Q Consensus 187 ~el~~~~ 193 (202)
+|+++..
T Consensus 330 ~e~~G~~ 336 (385)
T PLN02495 330 EDFRGAS 336 (385)
T ss_pred HHHhCcC
Confidence 9999874
No 39
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.74 E-value=3.9e-17 Score=148.13 Aligned_cols=147 Identities=26% Similarity=0.361 Sum_probs=120.3
Q ss_pred hhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc-C----CC-CCccchHHHHHHHHHHh
Q psy16780 44 TSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-R----QL-DYVPASIEALPEIAKAV 116 (202)
Q Consensus 44 ~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg-~----~~-~~~~~~~~~l~~i~~~~ 116 (202)
..+++....++.|+++++.+ ++||+++.+.+.+.++.+.++|+|+|.++.++| + .. ..+.|++.++.++++..
T Consensus 244 ~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~ 323 (450)
T TIGR01302 244 SSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYA 323 (450)
T ss_pred CCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHH
Confidence 34567778889999999995 899999999999999999999999999975544 1 11 34667888888876654
Q ss_pred C-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH--------------------hhh------------------
Q psy16780 117 G-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG--------------------LAH------------------ 157 (202)
Q Consensus 117 ~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~--------------------~~~------------------ 157 (202)
. .++|||++|||+++.|++|||++||++||+|+.|... +.+
T Consensus 324 ~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~ 403 (450)
T TIGR01302 324 AQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENK 403 (450)
T ss_pred hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccc
Confidence 2 3799999999999999999999999999999988731 100
Q ss_pred ------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780 158 ------SGK-------SGVRKVLDILINEFDQALALSGCTSVGEIQ 190 (202)
Q Consensus 158 ------~G~-------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~ 190 (202)
+|. -.+.+++.++..+|+..|.++|+.+++||+
T Consensus 404 ~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 404 TKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred cccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 111 127889999999999999999999999987
No 40
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.74 E-value=5.2e-17 Score=143.46 Aligned_cols=144 Identities=24% Similarity=0.345 Sum_probs=109.5
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC----CCCccchHHHHHHHHHHh-------C-CC
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ----LDYVPASIEALPEIAKAV-------G-HK 119 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~----~~~~~~~~~~l~~i~~~~-------~-~~ 119 (202)
.|+.+.++++..++||+++.+.+.++++.+.++|+|+|.++.+++.. +..+.|+...+.+++++. . ..
T Consensus 176 ~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~ 255 (369)
T TIGR01304 176 EPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRY 255 (369)
T ss_pred CHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46678888888899999988899999999999999999844333211 112356666666654332 2 14
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc--------------------------Ch-HHHHHHHH----
Q psy16780 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS--------------------------GK-SGVRKVLD---- 168 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~--------------------------G~-~~v~~~i~---- 168 (202)
+|||++|||+++.|++|++++|||+|++|++|+....+. |+ +.+++++.
T Consensus 256 vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~ 335 (369)
T TIGR01304 256 VHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPST 335 (369)
T ss_pred ceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCC
Confidence 999999999999999999999999999999999743211 10 12444433
Q ss_pred ------HHHHHHHHHHHHhCCCCHHhhhhcccc
Q psy16780 169 ------ILINEFDQALALSGCTSVGEIQREMVV 195 (202)
Q Consensus 169 ------~l~~~L~~~m~~~G~~~i~el~~~~~~ 195 (202)
.+...|+..|..+|+++++||++..++
T Consensus 336 ~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 336 LPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 578899999999999999999998664
No 41
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.74 E-value=7.8e-17 Score=141.97 Aligned_cols=133 Identities=29% Similarity=0.352 Sum_probs=97.2
Q ss_pred cHHHHHHHHHhc-CCCEEEEecc--CHHHHHH-HHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh---
Q psy16780 52 NWSDVTWLKTIT-KLPIVLKGIL--TAEDAKI-GVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV--- 116 (202)
Q Consensus 52 ~~~~i~~i~~~~-~~Pv~vK~~~--~~~~a~~-l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~--- 116 (202)
..+.|.++|+.. ++||.+|++. ..+++.. +.++|+|+|+++|+ |||.. +.+.|....+.++.+.+
T Consensus 190 l~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~ 269 (368)
T PF01645_consen 190 LAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKN 269 (368)
T ss_dssp HHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc
Confidence 456889999988 8999999983 3454444 88999999999996 45542 34667777787776654
Q ss_pred --CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-----------------------------ChHHHHH
Q psy16780 117 --GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-----------------------------GKSGVRK 165 (202)
Q Consensus 117 --~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~ 165 (202)
++++.++++||++++.|++|++++|||+|.+||+++.++.|. +.+.|.+
T Consensus 270 glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n 349 (368)
T PF01645_consen 270 GLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVAN 349 (368)
T ss_dssp T-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHH
T ss_pred CCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHH
Confidence 457999999999999999999999999999999999886542 2577999
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy16780 166 VLDILINEFDQALALSGCT 184 (202)
Q Consensus 166 ~i~~l~~~L~~~m~~~G~~ 184 (202)
+++.+.+|++.+|..+|.+
T Consensus 350 ~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 350 FLKACAEELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999964
No 42
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.72 E-value=5.2e-17 Score=146.09 Aligned_cols=139 Identities=21% Similarity=0.246 Sum_probs=113.3
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC-c-----------------C---CCCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG-G-----------------R---QLDY 101 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g-g-----------------~---~~~~ 101 (202)
.||+...++++++++.+++||+||+..+ .+.++.+.++|+|+|++.|+- + + +..+
T Consensus 151 ~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~S 230 (420)
T PRK08318 151 QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYC 230 (420)
T ss_pred CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccccc
Confidence 5788889999999999999999999843 366788999999999977641 1 0 0112
Q ss_pred ccc----hHHHHHHHHHHhC-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780 102 VPA----SIEALPEIAKAVG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ 176 (202)
Q Consensus 102 ~~~----~~~~l~~i~~~~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~ 176 (202)
|++ .++.+.++++.++ .++|||++|||.|++|+.+++.+|||+||+||++++ +|+ .++..+.++|+.
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii~~I~~~L~~ 302 (420)
T PRK08318 231 GPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIVEDMISGLSH 302 (420)
T ss_pred chhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhHHHHHHHHHH
Confidence 333 4667777777653 379999999999999999999999999999999885 466 467789999999
Q ss_pred HHHHhCCCCHHhhhhcc
Q psy16780 177 ALALSGCTSVGEIQREM 193 (202)
Q Consensus 177 ~m~~~G~~~i~el~~~~ 193 (202)
+|...|+.+++++.+..
T Consensus 303 ~l~~~g~~si~e~iG~~ 319 (420)
T PRK08318 303 YMDEKGFASLEDMVGLA 319 (420)
T ss_pred HHHHcCcchHHHHhccc
Confidence 99999999999998753
No 43
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.69 E-value=3e-16 Score=137.90 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=102.5
Q ss_pred ccCccccHHHHHHHHHhcC-----CCEEEEecc--C----HHHHHHHHHcCCcEEEeeccCc-------------CCCCC
Q psy16780 46 QLDETINWSDVTWLKTITK-----LPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHGG-------------RQLDY 101 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~-----~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~gg-------------~~~~~ 101 (202)
..+++...++++++|+.++ +||++|+.. + .+.++.+.++|+|+|+++|+.. ++.-+
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S 267 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS 267 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc
Confidence 4466667889999999887 999999983 2 3557888999999999998521 00111
Q ss_pred cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780 102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA 177 (202)
Q Consensus 102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~ 177 (202)
++ ..++.+.++++.+++++|||++|||+|++|+.+++.+|||+|++||+++. +|+ .+++.++++|+.+
T Consensus 268 G~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~----~gP----~~~~~i~~~L~~~ 339 (344)
T PRK05286 268 GRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY----EGP----GLVKEIVRGLARL 339 (344)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH----hCc----hHHHHHHHHHHHH
Confidence 22 24556777777776679999999999999999999999999999999986 366 5778899999999
Q ss_pred HHHhC
Q psy16780 178 LALSG 182 (202)
Q Consensus 178 m~~~G 182 (202)
|...|
T Consensus 340 l~~~g 344 (344)
T PRK05286 340 LRRDG 344 (344)
T ss_pred HHhcC
Confidence 98765
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.69 E-value=5e-16 Score=134.78 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=105.8
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccC---HHHHHHHH---HcCCcEEEeeccC--c--------CC-C-----CC---c
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILT---AEDAKIGV---EMGASAIMVSNHG--G--------RQ-L-----DY---V 102 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~---~~~a~~l~---~aG~d~I~v~~~g--g--------~~-~-----~~---~ 102 (202)
|++...++++++++.+++||++|+..+ .+.++.+. +.|+++|...++- + +. . .+ +
T Consensus 141 d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG 220 (310)
T PRK02506 141 DFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG 220 (310)
T ss_pred CHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc
Confidence 677788899999999999999999843 33344433 5567777665531 1 10 0 11 1
Q ss_pred c----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780 103 P----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL 178 (202)
Q Consensus 103 ~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m 178 (202)
+ .....+.++++.+..++|||++|||.|++|+++.+.+||++|++++++++ +|+ .++..+.++|+.+|
T Consensus 221 ~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~~l 292 (310)
T PRK02506 221 DYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGP----AVFERLTKELKAIM 292 (310)
T ss_pred hhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hCh----HHHHHHHHHHHHHH
Confidence 1 23445667777776689999999999999999999999999999999986 366 57789999999999
Q ss_pred HHhCCCCHHhhhhc
Q psy16780 179 ALSGCTSVGEIQRE 192 (202)
Q Consensus 179 ~~~G~~~i~el~~~ 192 (202)
...|+++++|+++.
T Consensus 293 ~~~g~~si~e~~G~ 306 (310)
T PRK02506 293 AEKGYQSLEDFRGK 306 (310)
T ss_pred HHhCCCCHHHHhCh
Confidence 99999999999984
No 45
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.68 E-value=2.2e-16 Score=136.21 Aligned_cols=119 Identities=23% Similarity=0.251 Sum_probs=94.1
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCcC---------------------CCCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGGR---------------------QLDY 101 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg~---------------------~~~~ 101 (202)
.||+...++++++++.+++||+||++.+ .+.++.+.++|+|+|+++|+... +..+
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~s 230 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYS 230 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCccc
Confidence 4788889999999999999999999854 36788899999999998875211 1112
Q ss_pred cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780 102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
++ .+++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+||+++. +|+. ++..+.++
T Consensus 231 G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~----~g~~----~~~~i~~~ 298 (299)
T cd02940 231 GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN----QGFT----IVDDMCTG 298 (299)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc----cCCc----HHHHHhhh
Confidence 22 24778888888876679999999999999999999999999999999885 4663 34445444
No 46
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.67 E-value=1e-15 Score=139.57 Aligned_cols=148 Identities=26% Similarity=0.339 Sum_probs=120.3
Q ss_pred hccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CC--CCccchHHHHHHHHHHhC
Q psy16780 45 SQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QL--DYVPASIEALPEIAKAVG 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~--~~~~~~~~~l~~i~~~~~ 117 (202)
+.++.....+.|++||+.+ +++|+.+.+.|.+.++.+.++|+|+|.|+-++|. +. ..+.|.+.++.++++...
T Consensus 248 a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 248 AHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred cCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHH
Confidence 3556666788999999998 7999999999999999999999999998765442 11 124678888888877543
Q ss_pred C-CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH---------------------------hh-------------
Q psy16780 118 H-KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG---------------------------LA------------- 156 (202)
Q Consensus 118 ~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~---------------------------~~------------- 156 (202)
. .+|||++|||+++.|+.|++++||++||+|+.|.-. +.
T Consensus 328 ~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~ 407 (479)
T PRK07807 328 ELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRAR 407 (479)
T ss_pred hcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcc
Confidence 2 799999999999999999999999999999988521 10
Q ss_pred ----hcCh-----------HHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 157 ----HSGK-----------SGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 157 ----~~G~-----------~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+|. ..+.++++++..+||..|.++|+.+|+||+.+
T Consensus 408 ~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 408 KALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred cCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 0121 11778899999999999999999999999877
No 47
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.67 E-value=1.8e-15 Score=136.35 Aligned_cols=139 Identities=27% Similarity=0.271 Sum_probs=112.8
Q ss_pred HHHHHHHHhc-CCCEEEEecc--CHHHHHH-HHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh-----
Q psy16780 54 SDVTWLKTIT-KLPIVLKGIL--TAEDAKI-GVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV----- 116 (202)
Q Consensus 54 ~~i~~i~~~~-~~Pv~vK~~~--~~~~a~~-l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~----- 116 (202)
+.|.++|+.. ..||.||++. ..+++.. ..+++||.|+|+|+ |||.. +.|.|....|.++.+.+
T Consensus 292 qlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~gl 371 (485)
T COG0069 292 QLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGL 371 (485)
T ss_pred HHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCC
Confidence 3677777765 4679999983 3555555 88999999999997 56643 23555555677766543
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc-----------------------------ChHHHHHHH
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-----------------------------GKSGVRKVL 167 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~i 167 (202)
+.++.|+++||++|+.|++|++++|||.|.+|++.+.++.|. .++.|.+++
T Consensus 372 Rd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~ 451 (485)
T COG0069 372 RDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYF 451 (485)
T ss_pred cceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHH
Confidence 567999999999999999999999999999999988776542 257799999
Q ss_pred HHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 168 DILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 168 ~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
..+.+|++.+|+.+|.+++++|+++
T Consensus 452 ~~~a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 452 TFVAEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcc
Confidence 9999999999999999999999976
No 48
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.64 E-value=2.7e-15 Score=129.24 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=93.5
Q ss_pred CccccHHHHHHHHHhcCCCEEEEecc--C----HHHHHHHHHc--CCcEEEeeccCc---------CC--C-----CCcc
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGIL--T----AEDAKIGVEM--GASAIMVSNHGG---------RQ--L-----DYVP 103 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~--~----~~~a~~l~~a--G~d~I~v~~~gg---------~~--~-----~~~~ 103 (202)
||+...++++++++.+++||+||++. + .+.++.+.++ |+|+|++.|+-+ +. + .++.
T Consensus 141 ~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~ 220 (294)
T cd04741 141 DFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGL 220 (294)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCc
Confidence 78888899999999999999999984 2 2335556677 999999876531 11 0 1121
Q ss_pred c-------hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780 104 A-------SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQ 176 (202)
Q Consensus 104 ~-------~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~ 176 (202)
+ .+..+.++++.++.++|||++|||.|++|+.+++.+|||+||++|++++ +|+ .+++.+.++|+.
T Consensus 221 SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~----~gp----~~~~~i~~~L~~ 292 (294)
T cd04741 221 AGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK----EGP----KVFARIEKELED 292 (294)
T ss_pred CchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh----cCc----hHHHHHHHHHHh
Confidence 1 2344566667775569999999999999999999999999999999985 366 466788888887
Q ss_pred HH
Q psy16780 177 AL 178 (202)
Q Consensus 177 ~m 178 (202)
+|
T Consensus 293 ~~ 294 (294)
T cd04741 293 IW 294 (294)
T ss_pred hC
Confidence 64
No 49
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.5e-15 Score=128.46 Aligned_cols=146 Identities=24% Similarity=0.293 Sum_probs=118.7
Q ss_pred ccCccccHHHHHHHHHhcC-CCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 46 QLDETINWSDVTWLKTITK-LPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
..+|+...++|+++++.++ +||.||.+. ..+.++.+.++|++.++|+++...+...++.+++.+.++++.+
T Consensus 117 l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~ 196 (323)
T COG0042 117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAV 196 (323)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhC
Confidence 4589999999999999994 999999872 2357889999999999997765445556678999999999988
Q ss_pred CCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHH-----HHHHh---hhcCh---HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRP-----ALWGL---AHSGK---SGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~-----~l~~~---~~~G~---~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+. +|||++|+|.|.+|+.++++ .|+|+||+||. +++.. ...|. ....+..+.+..+++.+....|..
T Consensus 197 ~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 275 (323)
T COG0042 197 PS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKK 275 (323)
T ss_pred CC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 43 99999999999999999999 58999999995 44331 12333 456778888999999999999866
Q ss_pred CHHhhhhc
Q psy16780 185 SVGEIQRE 192 (202)
Q Consensus 185 ~i~el~~~ 192 (202)
.+..+++.
T Consensus 276 ~~~~~r~h 283 (323)
T COG0042 276 GLRRLRKH 283 (323)
T ss_pred HHHHHHHH
Confidence 77777766
No 50
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.61 E-value=1.7e-14 Score=125.81 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=112.2
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.||++..++++++++.+++||.+|.+. ..+.++.+.++|+|.|+++++...+...+..+++.+.++++.+
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~-- 193 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV-- 193 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--
Confidence 478999999999999999999999862 2366788999999999997654334455667888999998877
Q ss_pred CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH-----Hhh----hcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW-----GLA----HSG----KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~-----~~~----~~G----~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
++|||++|||+|++|+.+++. .|||+||+||+++. ... ..| +....+.++.+.++++.+....|..
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPA 273 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChH
Confidence 799999999999999999997 69999999997653 211 112 2335567788888888888887753
Q ss_pred -CHHhhhhc
Q psy16780 185 -SVGEIQRE 192 (202)
Q Consensus 185 -~i~el~~~ 192 (202)
.+.++|+.
T Consensus 274 ~~~~~~rk~ 282 (321)
T PRK10415 274 KGYRIARKH 282 (321)
T ss_pred HHHHHHHHH
Confidence 45666655
No 51
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.56 E-value=2.4e-14 Score=125.03 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=91.2
Q ss_pred ccCccccHHHHHHHHHhcC-----CCEEEEecc--C----HHHHHHHHHcCCcEEEeeccCc-------------CCCCC
Q psy16780 46 QLDETINWSDVTWLKTITK-----LPIVLKGIL--T----AEDAKIGVEMGASAIMVSNHGG-------------RQLDY 101 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~-----~Pv~vK~~~--~----~~~a~~l~~aG~d~I~v~~~gg-------------~~~~~ 101 (202)
..|++...++++++++.++ +||++|+.. + .+.++.+.++|+|+|+++|+.. ++..+
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 3466677789999999886 999999973 2 3457888999999999988421 00011
Q ss_pred cc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780 102 VP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 102 ~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
++ ..++.+..+++.++.++|||++|||+|++|+.+++.+|||+|++||+++. +|+ .++..++++
T Consensus 259 G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP----~~~~~i~~~ 326 (327)
T cd04738 259 GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGP----GLVKRIKRE 326 (327)
T ss_pred ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCc----HHHHHHHhc
Confidence 22 23566777888776679999999999999999999999999999999986 466 344555554
No 52
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.56 E-value=8.9e-14 Score=120.80 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=97.8
Q ss_pred ccCccccHHHHHHHHHhc--CCCEEEEecc-------CHHHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHH
Q psy16780 46 QLDETINWSDVTWLKTIT--KLPIVLKGIL-------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKA 115 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~--~~Pv~vK~~~-------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~ 115 (202)
..+|++..++++++++.+ ++||.||.+. ..+.++.+.++|+|.|+|+++...+...+++ +++.+.++++.
T Consensus 113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~ 192 (312)
T PRK10550 113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR 192 (312)
T ss_pred hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh
Confidence 358888999999999988 4999999862 2356788999999999997654444445554 78889999888
Q ss_pred hCCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH-----HhhhcC--hHHHHHHHHHHHHHHHH
Q psy16780 116 VGHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW-----GLAHSG--KSGVRKVLDILINEFDQ 176 (202)
Q Consensus 116 ~~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~-----~~~~~G--~~~v~~~i~~l~~~L~~ 176 (202)
+ ++|||++|||.|++|+.++++ .|||+||+||+++. .....| .....+.++.+.++++.
T Consensus 193 ~--~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~ 259 (312)
T PRK10550 193 L--TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRL 259 (312)
T ss_pred c--CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHH
Confidence 7 799999999999999999996 68999999996553 221222 12344555666666643
No 53
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.55 E-value=8.4e-14 Score=138.25 Aligned_cols=139 Identities=24% Similarity=0.224 Sum_probs=109.8
Q ss_pred HHHHHHHHhc-CCCEEEEeccC--H-HHHHHHHHcCCcEEEeecc-CcCCC-------CCccchHHHHHHHHHHh-----
Q psy16780 54 SDVTWLKTIT-KLPIVLKGILT--A-EDAKIGVEMGASAIMVSNH-GGRQL-------DYVPASIEALPEIAKAV----- 116 (202)
Q Consensus 54 ~~i~~i~~~~-~~Pv~vK~~~~--~-~~a~~l~~aG~d~I~v~~~-gg~~~-------~~~~~~~~~l~~i~~~~----- 116 (202)
+.|.++|+.. +.||.||++.. . ..+..+.++|+|.|+|+|+ |||.. +.+.|....|.++.+.+
T Consensus 985 qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~gl 1064 (1485)
T PRK11750 985 QLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGL 1064 (1485)
T ss_pred HHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCC
Confidence 3567777766 67999999832 2 3344677899999999997 44532 23445444576665543
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc----------------------------ChHHHHHHHH
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS----------------------------GKSGVRKVLD 168 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~----------------------------G~~~v~~~i~ 168 (202)
++++.++++||++|+.|++|++++|||.|.+|++++.++.|. .++.|.+++.
T Consensus 1065 R~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~ 1144 (1485)
T PRK11750 1065 RHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFE 1144 (1485)
T ss_pred CcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHH
Confidence 567999999999999999999999999999999999876542 1467999999
Q ss_pred HHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 169 ILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 169 ~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+.+|++.+|..+|.++++||.+.
T Consensus 1145 ~~~~el~~~la~lG~~s~~elvGr 1168 (1485)
T PRK11750 1145 FIAEETREWMAQLGVRSLEDLIGR 1168 (1485)
T ss_pred HHHHHHHHHHHHhCCCCHHHhcCc
Confidence 999999999999999999999543
No 54
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.55 E-value=1.4e-14 Score=124.59 Aligned_cols=123 Identities=23% Similarity=0.278 Sum_probs=88.7
Q ss_pred CccccHHHHHHHHHhcCCCEEEEecc---CH---HHHHHHHHcCCcEEEeeccCcC----------CC----C---Ccc-
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGIL---TA---EDAKIGVEMGASAIMVSNHGGR----------QL----D---YVP- 103 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~---~~---~~a~~l~~aG~d~I~v~~~gg~----------~~----~---~~~- 103 (202)
+++...++++.+++..++||++|+.. +. +.+..+.+.|+++|++.|+-.. .. . +|+
T Consensus 146 ~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~ 225 (295)
T PF01180_consen 146 DPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPA 225 (295)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGG
T ss_pred CHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchh
Confidence 34455668888888889999999984 22 3355566889999998774210 01 1 122
Q ss_pred ---chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780 104 ---ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL 178 (202)
Q Consensus 104 ---~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m 178 (202)
.....+.++++.++.++|||++|||+|++|+.+++.+||++|+++|.+++ .|+ .+++.+.++|+.+|
T Consensus 226 i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~----~Gp----~~~~~i~~~L~~~l 295 (295)
T PF01180_consen 226 IRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY----RGP----GVIRRINRELEEWL 295 (295)
T ss_dssp GHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH----HGT----THHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh----cCc----HHHHHHHHHHHhhC
Confidence 24456777888886679999999999999999999999999999999986 366 46678888888887
No 55
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.55 E-value=1.6e-13 Score=119.42 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=107.8
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.+|++..++++++++.+++||++|.+. ..+.++.+.++|+|.|+++++...+...+++.++.+.++++.+
T Consensus 114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~-- 191 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV-- 191 (319)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--
Confidence 478889999999999999999999852 2466788999999999997643223333456788888888877
Q ss_pred CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHHH------hh---hcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALWG------LA---HSG----KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~~------~~---~~G----~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
++|||++|||++++|+.+++. .|||+||+||+++.. +. ..| +....+.++.+.++++...+..|..
T Consensus 192 ~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (319)
T TIGR00737 192 RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGES 271 (319)
T ss_pred CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence 799999999999999999995 789999999987742 10 112 1234556677777777777777643
Q ss_pred -CHHhhhhc
Q psy16780 185 -SVGEIQRE 192 (202)
Q Consensus 185 -~i~el~~~ 192 (202)
.+..+++.
T Consensus 272 ~~~~~~r~~ 280 (319)
T TIGR00737 272 KGLRIARKH 280 (319)
T ss_pred hHHHHHHHH
Confidence 34555443
No 56
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.54 E-value=8.2e-14 Score=119.25 Aligned_cols=106 Identities=23% Similarity=0.291 Sum_probs=84.4
Q ss_pred CccccHHHHHHHHHhcCCCEEEEec--cC----HHHHHHHHHcCCcEEEeeccC-cCC------------CC---Ccc--
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGI--LT----AEDAKIGVEMGASAIMVSNHG-GRQ------------LD---YVP-- 103 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~--~~----~~~a~~l~~aG~d~I~v~~~g-g~~------------~~---~~~-- 103 (202)
++++..++++++++.+++||++|+. .+ .+.++.+.++|+|+|+++|+. ++. .. ++.
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~ 225 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI 225 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence 5667788999999999999999987 33 466788999999999998752 110 01 111
Q ss_pred --chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 104 --ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 104 --~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||+++.
T Consensus 226 ~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 226 RPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 23556777777765479999999999999999999999999999999986
No 57
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.53 E-value=8.5e-14 Score=115.99 Aligned_cols=146 Identities=16% Similarity=0.010 Sum_probs=103.9
Q ss_pred hhhhhhccccccCCcceecccCCCccccc-----------CCCCcc--hhHHHhh-------hccCccccHHHHHHHHHh
Q psy16780 3 IYWMKSSLVCLVLSQYLLANFSGKLSQLS-----------NTSDSS--SLLAYIT-------SQLDETINWSDVTWLKTI 62 (202)
Q Consensus 3 ~~~~~~~~~~~~p~~~~~~n~~~~~~~~~-----------~~~~~~--~~~~~~~-------~~~d~~~~~~~i~~i~~~ 62 (202)
..|+..++...--+.+++.|+......+. +.++-| =.|..+. -..||+...++++.+++
T Consensus 54 ~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~- 132 (231)
T TIGR00736 54 NSYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE- 132 (231)
T ss_pred HHHHHHHHHHHhhcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-
Confidence 46888877664444567788776421111 111111 0111111 13388889999999994
Q ss_pred cCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q psy16780 63 TKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK 136 (202)
Q Consensus 63 ~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k 136 (202)
.++||+||++. +.+.++.+.++|+|+|+|+.. +.. .+..+++.++++++.++ .+|||++|||+|.+|+.+
T Consensus 133 ~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~--~~g-~~~a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e 208 (231)
T TIGR00736 133 LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAM--YPG-KPYADMDLLKILSEEFN-DKIIIGNNSIDDIESAKE 208 (231)
T ss_pred CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeC--CCC-CchhhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHH
Confidence 58999999984 247789999999999999632 110 12257888999988772 399999999999999999
Q ss_pred HHHhCCCEEEEcHHHHH
Q psy16780 137 ALALGAKMVFVGRPALW 153 (202)
Q Consensus 137 al~~GAd~V~ig~~~l~ 153 (202)
++..|||+||+||+.+.
T Consensus 209 ~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 209 MLKAGADFVSVARAILK 225 (231)
T ss_pred HHHhCCCeEEEcHhhcc
Confidence 99999999999998875
No 58
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.52 E-value=7.5e-14 Score=122.39 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=89.5
Q ss_pred ccCccccHHHHHHHHHhcC-------CCEEEEeccC------HHHHHHHHHcCCcEEEeeccCc-------------CCC
Q psy16780 46 QLDETINWSDVTWLKTITK-------LPIVLKGILT------AEDAKIGVEMGASAIMVSNHGG-------------RQL 99 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~-------~Pv~vK~~~~------~~~a~~l~~aG~d~I~v~~~gg-------------~~~ 99 (202)
..+++...++++++++.++ +||++|+..+ .+.++.+.++|+|+|++.|+-- ...
T Consensus 185 ~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GG 264 (335)
T TIGR01036 185 LQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGG 264 (335)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCc
Confidence 3466777889999998876 9999999842 3557888999999999988521 000
Q ss_pred CCcc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHH
Q psy16780 100 DYVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 100 ~~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
-+|+ .....+.++++.+++++|||++|||.+++|+.+++.+||++|++||++++ +|+. +++.+.++
T Consensus 265 lSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~----~Gp~----~~~~i~~~ 334 (335)
T TIGR01036 265 LSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY----WGPP----LVKEIVKE 334 (335)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH----hCch----HHHHHHhh
Confidence 1122 13345566666666679999999999999999999999999999999986 4663 44455544
No 59
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.50 E-value=9.7e-14 Score=120.43 Aligned_cols=144 Identities=26% Similarity=0.325 Sum_probs=102.0
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEecc--------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGIL--------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.||+...++++.+++.+++||.+|.+. +.+.++.+.++|+++|+|+++...+...++++|+.+.++++.+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~-- 182 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL-- 182 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---
T ss_pred cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--
Confidence 488889999999999999999999872 2566899999999999998876666677788999999999888
Q ss_pred CcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHH-----HHHHh---hhcC----hHHHHHHHHHHHHHHHHHHHHhC-CC
Q psy16780 119 KVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRP-----ALWGL---AHSG----KSGVRKVLDILINEFDQALALSG-CT 184 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~-----~l~~~---~~~G----~~~v~~~i~~l~~~L~~~m~~~G-~~ 184 (202)
++|||++|||.|.+|+.+.+.. |+|+||+||. +++.. ...| ...+.+.++.+.++++.+....| ..
T Consensus 183 ~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (309)
T PF01207_consen 183 PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEK 262 (309)
T ss_dssp TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCc
Confidence 6999999999999999999984 9999999995 44431 1111 11145667777888887777775 34
Q ss_pred CHHhhhhc
Q psy16780 185 SVGEIQRE 192 (202)
Q Consensus 185 ~i~el~~~ 192 (202)
.+..+++.
T Consensus 263 ~~~~~~k~ 270 (309)
T PF01207_consen 263 ALRQMRKH 270 (309)
T ss_dssp HHHHHHTT
T ss_pred hHHHHHHH
Confidence 45555554
No 60
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.49 E-value=7.8e-13 Score=115.20 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=100.2
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEecc--C--------HHHHHHHHHcCCcEEEeeccCc-CCCC-------CccchHHH
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGIL--T--------AEDAKIGVEMGASAIMVSNHGG-RQLD-------YVPASIEA 108 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~--~--------~~~a~~l~~aG~d~I~v~~~gg-~~~~-------~~~~~~~~ 108 (202)
.+|++..++++.+++.+++||.||++. + .+.++.+.++|++.|+|+++.. .+.. ..+..++.
T Consensus 106 ~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~ 185 (318)
T TIGR00742 106 GNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYER 185 (318)
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHH
Confidence 488889999999999999999999873 1 2447888999999999976431 1111 12236777
Q ss_pred HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH-----Hhh----hcC---hHHHHHHHHHHHHHHHH
Q psy16780 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW-----GLA----HSG---KSGVRKVLDILINEFDQ 176 (202)
Q Consensus 109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~-----~~~----~~G---~~~v~~~i~~l~~~L~~ 176 (202)
+.++++.+. ++|||++|||+|.+|+.+++. |||+|||||+++. ... .+| .....+.++.+.++++.
T Consensus 186 i~~vk~~~~-~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~ 263 (318)
T TIGR00742 186 VYQLKKDFP-HLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEE 263 (318)
T ss_pred HHHHHHhCC-CCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 778777653 699999999999999999996 9999999996553 211 112 12344566666677766
Q ss_pred HHHHhCCCCHHhhhhc
Q psy16780 177 ALALSGCTSVGEIQRE 192 (202)
Q Consensus 177 ~m~~~G~~~i~el~~~ 192 (202)
.... ...+.++++.
T Consensus 264 ~~~~--~~~~~~~rk~ 277 (318)
T TIGR00742 264 YLSQ--GLSLNHITRH 277 (318)
T ss_pred HHHc--cchHHHHHHH
Confidence 4333 2355566555
No 61
>KOG2550|consensus
Probab=99.48 E-value=6.8e-14 Score=122.90 Aligned_cols=150 Identities=25% Similarity=0.315 Sum_probs=117.9
Q ss_pred hhhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----C--CCCccchHHHHHHHHHH
Q psy16780 43 ITSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----Q--LDYVPASIEALPEIAKA 115 (202)
Q Consensus 43 ~~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~ 115 (202)
-.++|+..+..+.|++||+.+ ..+|+...+.+.+.++.|+++|||++.|+-..|. + ...+.|...++.++++.
T Consensus 270 DSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~ 349 (503)
T KOG2550|consen 270 DSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEF 349 (503)
T ss_pred ecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHH
Confidence 466899999999999999998 5778888889999999999999999999765552 2 23455555555544433
Q ss_pred hC-CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------H------hh------------
Q psy16780 116 VG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW--------------------G------LA------------ 156 (202)
Q Consensus 116 ~~-~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~--------------------~------~~------------ 156 (202)
.. -.+|+|++|||++..+++||+.+||+.||+|+.+.. + +.
T Consensus 350 A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~d 429 (503)
T KOG2550|consen 350 ANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVD 429 (503)
T ss_pred HHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccc
Confidence 21 279999999999999999999999999999985431 0 10
Q ss_pred ----hcC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 157 ----HSG-------KSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 157 ----~~G-------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+| .-++..++..+..+++..++..|++++++++..
T Consensus 430 kvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 430 KVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred eEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 001 123778999999999999999999999999865
No 62
>KOG1436|consensus
Probab=99.43 E-value=1.7e-12 Score=111.04 Aligned_cols=121 Identities=22% Similarity=0.318 Sum_probs=97.2
Q ss_pred CCCEEEEeccC-----H-HHHHHHHHcCCcEEEeeccCc-C-------------C-CCCc---cchHHHHHHHHHHhCCC
Q psy16780 64 KLPIVLKGILT-----A-EDAKIGVEMGASAIMVSNHGG-R-------------Q-LDYV---PASIEALPEIAKAVGHK 119 (202)
Q Consensus 64 ~~Pv~vK~~~~-----~-~~a~~l~~aG~d~I~v~~~gg-~-------------~-~~~~---~~~~~~l~~i~~~~~~~ 119 (202)
+.|+.+|...+ . +.+..+.+.+.|+++++|..- + . +.+. +.....+++++...+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 46999998743 2 345556689999999998521 1 0 1111 22455678888888889
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
||||++|||.|+.|+++.+.+||+.|+++++|.+ +|+ .+++++++||...|...|+.++.|+++.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999875 577 4778999999999999999999999875
No 63
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.41 E-value=8.4e-12 Score=109.37 Aligned_cols=143 Identities=16% Similarity=0.248 Sum_probs=102.0
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEecc------C----HHHHHHHHHcCCcEEEeeccCc-CCCCC-------ccchHH
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGIL------T----AEDAKIGVEMGASAIMVSNHGG-RQLDY-------VPASIE 107 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~----~~~a~~l~~aG~d~I~v~~~gg-~~~~~-------~~~~~~ 107 (202)
..+|++..++++.+++.+++||.+|.+. + .+.++.+.++|+|.++++++.+ .+... .+..++
T Consensus 115 ~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 115 MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYD 194 (333)
T ss_pred hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHH
Confidence 4588999999999999999999999752 1 3557888999999999976432 11111 234577
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----hh---hcCh----HHHHHHHHHHHHHHH
Q psy16780 108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG-----LA---HSGK----SGVRKVLDILINEFD 175 (202)
Q Consensus 108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~-----~~---~~G~----~~v~~~i~~l~~~L~ 175 (202)
.+.++++.+ .++|||++|||+|.+|+.++++ |||+||+||+++.. -. ..|. ....+.++.+.++++
T Consensus 195 ~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T PRK11815 195 RVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIE 272 (333)
T ss_pred HHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 788887654 2699999999999999999987 79999999987642 10 1121 234566677777777
Q ss_pred HHHHHhCCCCHHhhhhc
Q psy16780 176 QALALSGCTSVGEIQRE 192 (202)
Q Consensus 176 ~~m~~~G~~~i~el~~~ 192 (202)
..... |. .+..+++.
T Consensus 273 ~~~~~-~~-~~~~~rk~ 287 (333)
T PRK11815 273 RHLAQ-GG-RLNHITRH 287 (333)
T ss_pred HHHHc-Cc-hHHHHHHH
Confidence 76653 43 35555544
No 64
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.40 E-value=2.8e-12 Score=106.01 Aligned_cols=105 Identities=29% Similarity=0.292 Sum_probs=85.6
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 119 (202)
.++++..++++++++.+++|+.+|.... .+.++.+.++|+|+|++++....+...++..++.+..+++.. +
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--S 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--C
Confidence 4888899999999999999999998631 244677889999999997643222223455777788887755 7
Q ss_pred cEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780 120 VDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW 153 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~ 153 (202)
+||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 999999999999999999998 8999999999985
No 65
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.37 E-value=3.7e-12 Score=106.48 Aligned_cols=94 Identities=22% Similarity=0.185 Sum_probs=77.7
Q ss_pred CccccHHHHHHHHHhcCCCEEEEecc-----CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGIL-----TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~-----~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi 122 (202)
||+...++++.+++ .++||++|++. +.+.++.+.++|+|+|++++.. .+...+++.+.+++ . ++||
T Consensus 124 ~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~----~g~~ad~~~I~~i~--~--~ipV 194 (233)
T cd02911 124 DPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD----PGNHADLKKIRDIS--T--ELFI 194 (233)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCC----CCCCCcHHHHHHhc--C--CCEE
Confidence 78888999999998 59999999972 3577889999999998875421 11245667777764 3 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 123 YLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 123 ia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
|++|||.|.+|+.+++..|||+||+||+
T Consensus 195 IgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 195 IGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 9999999999999999999999999996
No 66
>KOG2335|consensus
Probab=99.36 E-value=5.7e-12 Score=109.55 Aligned_cols=106 Identities=25% Similarity=0.263 Sum_probs=90.5
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCC
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~ 118 (202)
-+|+++-++++.+++.+++||.+|++ -|.+.++.+.++|++.++|+|+...+ ...++.+++.++.+++.++.
T Consensus 124 ~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ 203 (358)
T KOG2335|consen 124 DNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD 203 (358)
T ss_pred cCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC
Confidence 47888899999999999999999997 25788999999999999996653222 22457799999999998854
Q ss_pred CcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~ 153 (202)
+|||++|+|.+.+|+-.++. .|||+||+|+.+|.
T Consensus 204 -ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 204 -IPVIANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred -CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 99999999999999999999 89999999996553
No 67
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.32 E-value=3e-11 Score=104.85 Aligned_cols=95 Identities=25% Similarity=0.344 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 54 SDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
+.++++++. +++|+. .+.+.+.++.+.++|+|.|++.++ +|+. +..+++..++++++.+ ++|||++|||.++
T Consensus 100 ~~i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~ 173 (307)
T TIGR03151 100 KYIPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADG 173 (307)
T ss_pred HHHHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCH
Confidence 578888875 777775 567899999999999999999875 3332 2235788889998877 7999999999999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 132 TDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
+|+.+++++||++|++|+.|+..
T Consensus 174 ~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 174 RGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HHHHHHHHcCCCEeecchHHhcc
Confidence 99999999999999999999864
No 68
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.24 E-value=1e-10 Score=102.34 Aligned_cols=97 Identities=27% Similarity=0.380 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
.+.++++++ .++.|+. .+.+++.++.+.++|+|+|++.|. ||.......++...++++++.+ ++|||+.|||.+
T Consensus 126 ~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPViaAGGI~d 201 (330)
T PF03060_consen 126 PEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH---SS-EEEESS--S
T ss_pred HHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc--CCcEEEecCcCC
Confidence 346677665 4777776 468899999999999999999874 5543311114666788888888 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+.++..++++||++|++||.|+.
T Consensus 202 g~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 202 GRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHHHCT-SEEEESHHHHT
T ss_pred HHHHHHHHHcCCCEeecCCeEEe
Confidence 99999999999999999999995
No 69
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.21 E-value=9.9e-11 Score=102.69 Aligned_cols=98 Identities=29% Similarity=0.404 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCC--CCccchHHHHHHHHHHhCCC-cEEEEecC
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQL--DYVPASIEALPEIAKAVGHK-VDVYLDGG 127 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipiia~GG 127 (202)
.++++.+++ .+.+|+.+ +.+...++++.++|+|+|++.+. ||..- +..+.+...++++++.+ + +|||+.||
T Consensus 117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 347777776 57777764 57899999999999999999774 44322 22455677889999988 5 99999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
|.++.++..++++||++|+|||.|+..
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t 219 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLAT 219 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhcc
Confidence 999999999999999999999999953
No 70
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.17 E-value=1.2e-09 Score=87.90 Aligned_cols=101 Identities=25% Similarity=0.222 Sum_probs=74.7
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-CccchHHHHHHHHHHhCCCcEEEEec
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-YVPASIEALPEIAKAVGHKVDVYLDG 126 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipiia~G 126 (202)
.|....+++++|++.. -+++--+.+.|++..+.++|+|.|--...|.|... +..|+++.+.++++. .+|||+.|
T Consensus 77 Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEG 151 (192)
T PF04131_consen 77 RPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEG 151 (192)
T ss_dssp -SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEES
T ss_pred CCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecC
Confidence 3444567999999987 55556789999999999999999976555444321 145788888888763 79999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+|.+++++.+++.+||++|.+|+++.+
T Consensus 152 ri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 152 RIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp S--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 999999999999999999999999875
No 71
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.14 E-value=1.1e-09 Score=90.46 Aligned_cols=101 Identities=23% Similarity=0.175 Sum_probs=78.8
Q ss_pred cccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 50 TINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
+...++++++++..++|+++ .+.+.++++.+.++|+|++.+++++-+.. ....+..+.++++++.+ ++||++.||
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GG 181 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGR 181 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECC
Confidence 34456788887645778775 56788999999999999998754432221 12234567788888777 799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|++++|+.+++++|||+|++|+.++.
T Consensus 182 I~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 182 INTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 99999999999999999999999864
No 72
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.12 E-value=5.8e-10 Score=96.98 Aligned_cols=102 Identities=27% Similarity=0.194 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCCCCC--------ccchHH
Q psy16780 50 TINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQLDY--------VPASIE 107 (202)
Q Consensus 50 ~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~--------~~~~~~ 107 (202)
.+..++++++|+.+ ++||.+|+.. +. +.++.+.++|+|+|.+++........ ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 44678999999998 7899999872 33 34678899999999998753321111 122345
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780 108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW 153 (202)
Q Consensus 108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~ 153 (202)
.+..+++.+ ++||+++|||++++++.++++. |||+|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 667777777 7999999999999999999998 7999999999986
No 73
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.11 E-value=1.3e-09 Score=89.97 Aligned_cols=100 Identities=23% Similarity=0.221 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
...+.++++++..++|+++ .+.+++++..+.++|+|++.+..+|-+. .....++++.+.++++.+ ++|+++.|||
T Consensus 110 ~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI 186 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRI 186 (219)
T ss_pred CHHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCC
Confidence 5567888888776688877 4578899999999999999765443221 112234677888888777 7999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 129 RYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++++|+.+++++|||+|++||+++.
T Consensus 187 ~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 187 NSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CCHHHHHHHHHCCCCEEEEchHHhC
Confidence 9999999999999999999999875
No 74
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.10 E-value=4.7e-10 Score=98.57 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=79.8
Q ss_pred ccccHHHHHHHHHhcCCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCC--CC-CccchHHHHHHHH
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQ--LD-YVPASIEALPEIA 113 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~--~~-~~~~~~~~l~~i~ 113 (202)
..|..++|+.||+.++.||.+|+.. +. +.++.+.++|+|+|.|+++.-.. .. .....+.....++
T Consensus 192 ~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 271 (337)
T PRK13523 192 YRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIR 271 (337)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHH
Confidence 3557789999999999999999872 43 44578889999999997642111 01 0112345566777
Q ss_pred HHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 114 KAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 114 ~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
+.+ ++||+++|+|++++++.++++.| ||+|++||+++.
T Consensus 272 ~~~--~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 272 EHA--NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred hhc--CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 776 79999999999999999999987 999999999995
No 75
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.05 E-value=3.7e-09 Score=86.98 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=78.7
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC--------------CC-----------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR--------------QL----------------- 99 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~--------------~~----------------- 99 (202)
..+.++.+++.+++||++|.. .+.+.++.+.++|+|+|++....-. .+
T Consensus 60 ~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~ 139 (217)
T cd00331 60 SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALA 139 (217)
T ss_pred CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHH
Confidence 568999999999999999864 5677999999999999997542100 00
Q ss_pred -----------C--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 100 -----------D--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 100 -----------~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+ ...++.+.+.++++.++.++|+++.|||.+++|+.+++.+||++|.+||+++.
T Consensus 140 ~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 140 LGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred cCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 0 01123444566655543478999999999999999999999999999999985
No 76
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.04 E-value=6e-09 Score=88.52 Aligned_cols=99 Identities=27% Similarity=0.274 Sum_probs=82.5
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC------------------------C------C
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL------------------------D------Y 101 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~------------------------~------~ 101 (202)
..++++.+|+.++.|+.. .+.+.+++..+.++|+|.|--...|+|.- . .
T Consensus 100 ~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~ 178 (283)
T cd04727 100 ADEEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKE 178 (283)
T ss_pred HHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcc
Confidence 467999999988888875 67899999999999999998776555542 0 0
Q ss_pred ccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 102 VPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 102 ~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
..+.++.|.++++.+ ++||+ +.|||.+++++.+++.+||++|++|++++.
T Consensus 179 ~~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 179 IQAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred cCCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 135677888887766 79997 999999999999999999999999999974
No 77
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.02 E-value=1.2e-09 Score=95.11 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=76.0
Q ss_pred hccCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhC-----
Q psy16780 45 SQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVG----- 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~----- 117 (202)
..++|. .++++++ .+++|+. .+.++..++++.++|+|+|++.|+ ||+. +..++...++++.+.+.
T Consensus 89 ~~G~P~----~~~~lk~-~Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~ 160 (320)
T cd04743 89 AGGRPD----QARALEA-IGISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGP 160 (320)
T ss_pred cCCChH----HHHHHHH-CCCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcc
Confidence 355664 2466664 4788875 467899999999999999999885 4543 12234444555544431
Q ss_pred ---CCcEEEEecCCCCHHHHHHHHHhCC--------CEEEEcHHHHHH
Q psy16780 118 ---HKVDVYLDGGVRYGTDVFKALALGA--------KMVFVGRPALWG 154 (202)
Q Consensus 118 ---~~ipiia~GGI~~~~D~~kal~~GA--------d~V~ig~~~l~~ 154 (202)
.++|||+.|||.++..+..++++|| ++|+||+.|+..
T Consensus 161 ~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 161 DKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred cccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 2699999999999999999999998 799999999963
No 78
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.01 E-value=3.3e-09 Score=94.66 Aligned_cols=104 Identities=23% Similarity=0.217 Sum_probs=78.5
Q ss_pred CccccHHHHHHHHHhc--CCCEEEEecc----------------------CH----HHHHHHHHcCCcEEEeeccCcCCC
Q psy16780 48 DETINWSDVTWLKTIT--KLPIVLKGIL----------------------TA----EDAKIGVEMGASAIMVSNHGGRQL 99 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~----------------------~~----~~a~~l~~aG~d~I~v~~~gg~~~ 99 (202)
...|..++|+.||+.+ +.||.+|+.. +. +.++.+.++|+|+|.|+++...+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 4566789999999998 5799999862 22 346778889999999976421111
Q ss_pred C-Ccc------c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 100 D-YVP------A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 100 ~-~~~------~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
. ..+ . .+.....+++.+ ++||+++|||++++++.++++.| ||+|++||+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 1 111 1 133456677777 79999999999999999999986 999999999986
No 79
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.00 E-value=2.7e-09 Score=89.52 Aligned_cols=104 Identities=17% Similarity=0.061 Sum_probs=76.8
Q ss_pred cCccccHHHHHHHHHhc--CCCE---EEEec------cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780 47 LDETINWSDVTWLKTIT--KLPI---VLKGI------LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~--~~Pv---~vK~~------~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~ 114 (202)
.||++..+.++.+.+.+ .+|+ .+|.. .+ .+.++.+.++|++.+++++....+...+ ++++.+.++++
T Consensus 109 ~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~ 187 (241)
T PRK14024 109 ENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCA 187 (241)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHh
Confidence 46776666766665554 2343 23221 12 4678999999999999976433222334 48899999888
Q ss_pred HhCCCcEEEEecCCCCHHHHHHHHH---hCCCEEEEcHHHHH
Q psy16780 115 AVGHKVDVYLDGGVRYGTDVFKALA---LGAKMVFVGRPALW 153 (202)
Q Consensus 115 ~~~~~ipiia~GGI~~~~D~~kal~---~GAd~V~ig~~~l~ 153 (202)
.+ ++|||++|||+|.+|+.++.. .||++|++||+++.
T Consensus 188 ~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 188 RT--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred hC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 76 799999999999999999875 49999999999985
No 80
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.00 E-value=1.1e-08 Score=84.88 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccC--cCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG--GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
.+.++++++ .++|++++ +.+.+.++.+.+.|+|+|.+.+.+ |.........++.+.++++.+ ++||++.|||++
T Consensus 92 ~~~~~~~~~-~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~ 167 (236)
T cd04730 92 AEVVERLKA-AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIAD 167 (236)
T ss_pred HHHHHHHHH-cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 446666664 46888775 456788899999999999986641 221111124566778887766 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHhhhcCh
Q psy16780 131 GTDVFKALALGAKMVFVGRPALWGLAHSGK 160 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~~~~~~G~ 160 (202)
++|+.+++..|||+|++||+++....+.+.
T Consensus 168 ~~~v~~~l~~GadgV~vgS~l~~~~e~~~~ 197 (236)
T cd04730 168 GRGIAAALALGADGVQMGTRFLATEESGAS 197 (236)
T ss_pred HHHHHHHHHcCCcEEEEchhhhcCcccCCC
Confidence 999999999999999999999976444443
No 81
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.99 E-value=2.7e-09 Score=94.28 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=76.8
Q ss_pred ccccHHHHHHHHHhcC------CCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCcCCCC--CccchHHH
Q psy16780 49 ETINWSDVTWLKTITK------LPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEA 108 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~------~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~ 108 (202)
..+..++++.||+.++ +||.+|+.. +. +.++.+.++|+|+|.|+.+..+... ........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 4557789999999874 466666542 23 3467888999999999864322111 11112344
Q ss_pred HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+..+++.+..++|||++|||++++++.++++.|||+|++||+++.
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 555666554579999999999999999999999999999999986
No 82
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.98 E-value=4.8e-09 Score=92.39 Aligned_cols=103 Identities=19% Similarity=0.116 Sum_probs=75.0
Q ss_pred ccccHHHHHHHHHhcCCC--EEEEecc--------CH----HHHHHHHHcC-CcEEEeeccCcCCC----------CCc-
Q psy16780 49 ETINWSDVTWLKTITKLP--IVLKGIL--------TA----EDAKIGVEMG-ASAIMVSNHGGRQL----------DYV- 102 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~P--v~vK~~~--------~~----~~a~~l~~aG-~d~I~v~~~gg~~~----------~~~- 102 (202)
..+..++++.||+.++.+ |.+|+.. +. +.++.+.++| +|+|.|+...-... ...
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPP 270 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCc
Confidence 366788999999998554 5555441 23 4467888898 89999965311110 001
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
...++....+++.+ ++|||++|+|++++++.++++.| ||+|++||+++.
T Consensus 271 ~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 271 GPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred chhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 12355667777777 79999999999999999999976 999999999986
No 83
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.97 E-value=4.1e-09 Score=83.29 Aligned_cols=98 Identities=28% Similarity=0.251 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHhc-CCCEEEEeccCHHHHHH-HHHcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEe
Q psy16780 50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKI-GVEMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~-l~~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~ 125 (202)
++..+.++++++.+ +.|+++|.....+.... +.+.|+|.+.++++.++....... ....+..+++. .++||+++
T Consensus 99 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~ 176 (200)
T cd04722 99 REDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAG 176 (200)
T ss_pred HHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEE
Confidence 44677999999988 89999998743322222 688999999998764433222111 11233333333 37999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 126 GGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 126 GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
|||++++++.+++..|||+|++||
T Consensus 177 GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 177 GGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCHHHHHHHHHhCCCEEEecC
Confidence 999999999999999999999986
No 84
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.97 E-value=9.5e-09 Score=85.18 Aligned_cols=103 Identities=23% Similarity=0.334 Sum_probs=81.3
Q ss_pred ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC--------------cC----------------
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG--------------GR---------------- 97 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g--------------g~---------------- 97 (202)
....++.++++++.+++||++.+. .++++++.+.+.|+|.|+++... +.
T Consensus 58 ~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~ 137 (234)
T cd04732 58 EPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVAT 137 (234)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEE
Confidence 344678999999999999999864 78999999999999999875310 00
Q ss_pred -------CC------------------------C--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780 98 -------QL------------------------D--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM 144 (202)
Q Consensus 98 -------~~------------------------~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~ 144 (202)
.. + ...++++.+.++++.+ ++|++++|||++.+|+.+++..||++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~g 215 (234)
T cd04732 138 KGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAG 215 (234)
T ss_pred CCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCE
Confidence 00 0 0113456677776665 79999999999999999999999999
Q ss_pred EEEcHHHHH
Q psy16780 145 VFVGRPALW 153 (202)
Q Consensus 145 V~ig~~~l~ 153 (202)
|++||.++.
T Consensus 216 v~vg~~~~~ 224 (234)
T cd04732 216 VIVGKALYE 224 (234)
T ss_pred EEEeHHHHc
Confidence 999999985
No 85
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.97 E-value=1.3e-08 Score=86.67 Aligned_cols=99 Identities=27% Similarity=0.242 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCC---------------------C----------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL---------------------D---------- 100 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~---------------------~---------- 100 (202)
..+.+..+|+.+++|+.. .+.+.+++.++.+.|+|.|--.+.+||.- .
T Consensus 102 ade~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~ 180 (287)
T TIGR00343 102 ADWTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAK 180 (287)
T ss_pred HHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhc
Confidence 467899999989999886 67899999999999999998876666542 0
Q ss_pred CccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 101 YVPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 101 ~~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
...+.++.+.++++.. ++||+ +.|||.|++|+..++.+||++|.+||.+..
T Consensus 181 ~~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 181 ELRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred ccCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 0135667788887765 79998 999999999999999999999999999874
No 86
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.94 E-value=7.3e-09 Score=90.82 Aligned_cols=103 Identities=22% Similarity=0.183 Sum_probs=79.1
Q ss_pred ccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeeccCcCCC--CCc-c-chHHHHH
Q psy16780 49 ETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNHGGRQL--DYV-P-ASIEALP 110 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~gg~~~--~~~-~-~~~~~l~ 110 (202)
+++..++++.||+.+ +.||.+|+. .+. +.++.+.+.|+|+|.++.++.+.. ... + ...+...
T Consensus 204 ~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 283 (336)
T cd02932 204 MRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAE 283 (336)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHH
Confidence 445589999999998 789999976 233 345678889999999975432211 111 1 1345566
Q ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
.+++.+ ++||+++|+|.+++++.++++.| ||+|++||+++.
T Consensus 284 ~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 284 RIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 777777 79999999999999999999998 999999999986
No 87
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.94 E-value=6.6e-09 Score=86.92 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|+|.+++++..... ......++.+.++++.. ++|||++|||++.+|+.+++.. |||+|++||+|+.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 467789999999999997632111 11224677788887766 8999999999999999999997 9999999999985
No 88
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.94 E-value=2.4e-08 Score=84.76 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcC--C------------C-----------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGR--Q------------L----------------- 99 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~--~------------~----------------- 99 (202)
..+.++.+++.+++||+.|.. .++.++..+.++|||+|.+...--+ + +
T Consensus 99 ~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~ 178 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALK 178 (260)
T ss_pred CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 588999999999999999965 5677899999999999998753210 0 0
Q ss_pred --------C-----CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 100 --------D-----YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 100 --------~-----~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+ .-.++.+...++.+.+++.+|+|+.|||.+++|+.+++.+|||+|.+|++++.
T Consensus 179 ~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 179 LGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred cCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 0 01233445566666554457999999999999999999999999999999985
No 89
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.93 E-value=1.3e-08 Score=89.58 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=78.3
Q ss_pred ccccHHHHHHHHHhcCC-CEEEEecc-----------CH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780 49 ETINWSDVTWLKTITKL-PIVLKGIL-----------TA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~-Pv~vK~~~-----------~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i 112 (202)
..|..++|+.||+.++. ||.+|++. +. +.++.+.+.|+|+|.|+... +........++....+
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHH
Confidence 45577899999998854 89999862 22 44678889999999996531 1111123455667778
Q ss_pred HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
++.+ ++||+++|||+ ++++.++++.| ||+|++||+++.
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 8877 89999999997 99999999986 999999999986
No 90
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.88 E-value=3.6e-08 Score=82.24 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=79.6
Q ss_pred cccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccC--------------cC-----------------
Q psy16780 50 TINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHG--------------GR----------------- 97 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~g--------------g~----------------- 97 (202)
...++.|+++.+.+++|+++.+ +.+.++++.+.++|+|.|+++... |.
T Consensus 62 ~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 62 RKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred cccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 3456788999999999999964 478999999999999999886410 00
Q ss_pred ------CC------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780 98 ------QL------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV 145 (202)
Q Consensus 98 ------~~------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V 145 (202)
.. ++ ..++++.+.++++.+ ++||++.|||++.+|+.++..+||++|
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv 219 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGV 219 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 00 00 123456677777666 799999999999999999988999999
Q ss_pred EEcHHHHH
Q psy16780 146 FVGRPALW 153 (202)
Q Consensus 146 ~ig~~~l~ 153 (202)
++||+++.
T Consensus 220 ~vgsa~~~ 227 (241)
T PRK13585 220 VVGSALYK 227 (241)
T ss_pred EEEHHHhc
Confidence 99999985
No 91
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.88 E-value=5.1e-08 Score=83.19 Aligned_cols=99 Identities=25% Similarity=0.264 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC------------------CC------------C
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ------------------LD------------Y 101 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~------------------~~------------~ 101 (202)
..+.+..+|+.+++|+.. .+.+.+++.++.+.|+|.|--.|-.||. +. .
T Consensus 109 ad~~~~~~K~~f~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~ 187 (293)
T PRK04180 109 ADEEYHIDKWDFTVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKE 187 (293)
T ss_pred hHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccc
Confidence 457899999999999886 6789999999999999999877533332 00 0
Q ss_pred ccchHHHHHHHHHHhCCCcEEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 102 VPASIEALPEIAKAVGHKVDVY--LDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 102 ~~~~~~~l~~i~~~~~~~ipii--a~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
..++++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+||.++.
T Consensus 188 ~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 188 LQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 235677788887765 79998 999999999999999999999999999874
No 92
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.87 E-value=2.4e-08 Score=87.66 Aligned_cols=104 Identities=19% Similarity=0.165 Sum_probs=79.2
Q ss_pred CccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeeccCcCCCCC----c-----c-
Q psy16780 48 DETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNHGGRQLDY----V-----P- 103 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~----~-----~- 103 (202)
.+.|..++|++||+.+ +.||.+|.. .+. +.++.+.++|+|.|.|+++.-.+... . +
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 3556788999999998 589999985 343 44678889999999997642111110 0 0
Q ss_pred -chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 104 -ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 104 -~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
..++...++++.+ ++||+++|+|.+.+++.++++.| ||+|++||+++.
T Consensus 278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 0134456677777 89999999999999999999987 999999999996
No 93
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.86 E-value=1.6e-07 Score=79.66 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=79.9
Q ss_pred HhhhccCccccHHHHHHHHHh-cCCCEEEEeccCH-------HHHHHHHHcCCcEEEeeccC--------------c---
Q psy16780 42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILTA-------EDAKIGVEMGASAIMVSNHG--------------G--- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~~-------~~a~~l~~aG~d~I~v~~~g--------------g--- 96 (202)
.+....+.+..++.++++|+. .++|++.=...++ +.++.+.++|+|++++.--. |
T Consensus 64 al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~ 143 (256)
T TIGR00262 64 ALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKP 143 (256)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcE
Confidence 345566777789999999977 7899763222333 55889999999998884210 0
Q ss_pred -------CC----------C---------C--Ccc------chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 97 -------RQ----------L---------D--YVP------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 97 -------~~----------~---------~--~~~------~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
+. . . .|. ...+.+.++++.. +.||++.|||++++++.++...||
T Consensus 144 i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GA 221 (256)
T TIGR00262 144 IFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGA 221 (256)
T ss_pred EEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCC
Confidence 00 0 0 111 1233456665554 679999999999999999999999
Q ss_pred CEEEEcHHHHHHh
Q psy16780 143 KMVFVGRPALWGL 155 (202)
Q Consensus 143 d~V~ig~~~l~~~ 155 (202)
|+|.+||+++..+
T Consensus 222 DgvVvGSaiv~~~ 234 (256)
T TIGR00262 222 DGVIVGSAIVKII 234 (256)
T ss_pred CEEEECHHHHHHH
Confidence 9999999998755
No 94
>KOG1799|consensus
Probab=98.85 E-value=1.4e-09 Score=94.25 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=133.0
Q ss_pred hhhhhhcccc--ccCCcceecccCCCccccc-----C---CCCcchhH-----HHhhh--------ccCccccHHHHHHH
Q psy16780 3 IYWMKSSLVC--LVLSQYLLANFSGKLSQLS-----N---TSDSSSLL-----AYITS--------QLDETINWSDVTWL 59 (202)
Q Consensus 3 ~~~~~~~~~~--~~p~~~~~~n~~~~~~~~~-----~---~~~~~~~~-----~~~~~--------~~d~~~~~~~i~~i 59 (202)
+||++...|| ..|..+.|+..+..-+... + ..-++.+. .|.|. ..+|...-++..||
T Consensus 189 e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi 268 (471)
T KOG1799|consen 189 EQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWI 268 (471)
T ss_pred HHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChhhhHHHhhhh
Confidence 6899888888 5899999998876433222 0 11111221 23333 35788888999999
Q ss_pred HHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccC----c--------------CCCCCc-------cchHHHHH
Q psy16780 60 KTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHG----G--------------RQLDYV-------PASIEALP 110 (202)
Q Consensus 60 ~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~g----g--------------~~~~~~-------~~~~~~l~ 110 (202)
+....+|++-|...+ .+.++...+.|+.+|...|+- | +.-.++ |.....+.
T Consensus 269 ~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~ 348 (471)
T KOG1799|consen 269 NAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVM 348 (471)
T ss_pred hhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHH
Confidence 999999999998753 356777888899988776531 1 110111 22344455
Q ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190 (202)
Q Consensus 111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~ 190 (202)
.+++.++ ..|+.+.|||-++.|.+..+.+|++.|++++..+. .|. ..++.+..+|+..|...|.+++++++
T Consensus 349 ~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~----~~V~~~Ca~LK~~m~~~~~~ti~~~~ 419 (471)
T KOG1799|consen 349 NIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGY----GHVKTLCAELKDFMKQHNFSTIEEFR 419 (471)
T ss_pred HHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCc----chHHHHHHHHHHHHHHcCchhhhhcc
Confidence 5666664 68999999999999999999999999999998875 344 34568899999999999999999999
Q ss_pred hccc
Q psy16780 191 REMV 194 (202)
Q Consensus 191 ~~~~ 194 (202)
++-+
T Consensus 420 G~SL 423 (471)
T KOG1799|consen 420 GHSL 423 (471)
T ss_pred Ccch
Confidence 8854
No 95
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.84 E-value=4.6e-08 Score=81.85 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=79.7
Q ss_pred ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcC---------------CC
Q psy16780 51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGR---------------QL 99 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~---------------~~ 99 (202)
...+.|+++.+.+++||.+.+- .+.++++.+.++|++.++++.. +.+ .+
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 3567999999989999999864 7899999999999999988531 100 00
Q ss_pred ------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 100 ------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 100 ------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
++ ..++.+.+.++.+.. ++||+++||+++.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 123555666666554 79999999999999999999999999999
Q ss_pred cHHHHH
Q psy16780 148 GRPALW 153 (202)
Q Consensus 148 g~~~l~ 153 (202)
|++++.
T Consensus 221 G~a~~~ 226 (234)
T PRK13587 221 GKAAHQ 226 (234)
T ss_pred hHHHHh
Confidence 999985
No 96
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.83 E-value=2.2e-08 Score=82.96 Aligned_cols=76 Identities=29% Similarity=0.266 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+......+...+ ++++.+.++++.+ ++|+|++|||++.+|+.+++..| |++|++||+++.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4678888999999888865321111223 6788889988776 69999999999999999999998 999999999986
No 97
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.81 E-value=2.4e-08 Score=84.66 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH-HhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL-ALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal-~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+++.+...-+...+ ++++.+.++++.. ++|||++|||++.+|+.+++ ..|+++|.+|++|.+
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 3667889999999999975322112223 5888888888776 79999999999999999999 799999999999987
No 98
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.81 E-value=6.7e-08 Score=80.27 Aligned_cols=100 Identities=26% Similarity=0.256 Sum_probs=76.4
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
.+|.+...+.++++++.+ .|+.+|.+ ++.++ ++.+.++|+|+|..+.+ +..+..+.+.++.+++..
T Consensus 102 ~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG----~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 102 SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG----FSTGGATVEDVKLMRETV 176 (221)
T ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHh
Confidence 455566677888888765 57889985 34333 45678999998877543 222345777777777777
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
+++++|.++|||+|.+|+.+.+.+||+.++..+.
T Consensus 177 ~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 177 GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 7789999999999999999999999999987664
No 99
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.78 E-value=5.1e-08 Score=86.55 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=74.7
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccC----HHHHHHHHHcCCcEEEeeccCcCCCC-CccchHHHHHHHHHHhCCCcE
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILT----AEDAKIGVEMGASAIMVSNHGGRQLD-YVPASIEALPEIAKAVGHKVD 121 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~----~~~a~~l~~aG~d~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ip 121 (202)
.+|++..++++++++.. |.+|...+ .+.++.+.++|+|.|.++++.-.+.+ ++..++..+.++.+.+ ++|
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IP 190 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVP 190 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCC
Confidence 56777788888888853 77887643 47789999999999999765322222 2233466677776666 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 122 VYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 122 iia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
||+ |++.+.+++.+++.+|||+|++|+
T Consensus 191 VI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 191 VIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 998 999999999999999999999875
No 100
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.78 E-value=1.7e-07 Score=78.24 Aligned_cols=100 Identities=25% Similarity=0.366 Sum_probs=82.8
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcC---------------CC-
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGR---------------QL- 99 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~---------------~~- 99 (202)
..+.+++|.+.+++||-+.+- .+.+.++.++++|++.++++.. |++ .|
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 357999999999999999864 7899999999999999998642 110 00
Q ss_pred -----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEE
Q psy16780 100 -----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFV 147 (202)
Q Consensus 100 -----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~i 147 (202)
|+ ..++.+.+.++++.+ ++|+++||||+|-+|+..+-.+ |...|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 11 136778888888888 8999999999999999988889 8999999
Q ss_pred cHHHHH
Q psy16780 148 GRPALW 153 (202)
Q Consensus 148 g~~~l~ 153 (202)
||+++.
T Consensus 221 G~ALy~ 226 (241)
T COG0106 221 GRALYE 226 (241)
T ss_pred ehHHhc
Confidence 999985
No 101
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.77 E-value=2.6e-07 Score=75.20 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=68.4
Q ss_pred HHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 56 VTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 56 i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
++.+++.. +..|.+ .+.+.++++.+.++|+|++.++....+... ..+..++.++++++.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 44555544 334444 346788999999999999976532222111 1123566777777666 7999999999 999
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q psy16780 133 DVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 133 D~~kal~~GAd~V~ig~~~l~ 153 (202)
++.+++.+||++|+++|.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999985
No 102
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.77 E-value=5.6e-08 Score=80.55 Aligned_cols=77 Identities=30% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
.+.++.+.+.|++.+++.......... .++++.+.++++.+ ++|++++|||++.+|+.+++..||++|++||+++..
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 467888999999999876532211112 35788888887765 799999999999999999999999999999999863
No 103
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.75 E-value=1.2e-07 Score=79.98 Aligned_cols=74 Identities=24% Similarity=0.283 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEeeccC--cCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHG--GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPA 151 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~ 151 (202)
.+.++.+.+.|++.++++... |+. . .++++.+.++++.. ++|||++|||++.+|+.+++.. ||++|++|++|
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~--~-g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTK--N-GYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCC--C-CcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 466788999999999986632 221 1 24678888887766 7999999999999999999975 99999999999
Q ss_pred HH
Q psy16780 152 LW 153 (202)
Q Consensus 152 l~ 153 (202)
..
T Consensus 231 ~~ 232 (253)
T PRK02083 231 HF 232 (253)
T ss_pred Hc
Confidence 85
No 104
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.75 E-value=1.6e-07 Score=78.01 Aligned_cols=75 Identities=23% Similarity=0.225 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH-HHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK-ALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k-al~~GAd~V~ig~~~l 152 (202)
.+.++.+.++|+|.+++++....+.. ..++++.+.++++.+ ++||+++|||++.+|+.+ +...||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~-~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTM-KGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCc-CCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 47789999999999999873221111 224678888888776 799999999999999999 5558999999999874
No 105
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.75 E-value=7.4e-07 Score=75.87 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=78.7
Q ss_pred HhhhccCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc----
Q psy16780 42 YITSQLDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG---- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg---- 96 (202)
.+....+.+..++.++++|+..++|+++=.=.+ ...++.+.++|+|++++..- .|
T Consensus 69 AL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 69 ALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 455566777889999999988899966421112 24578899999999998521 00
Q ss_pred ------CC-------------------CC--Ccc-----chH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 97 ------RQ-------------------LD--YVP-----ASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 97 ------~~-------------------~~--~~~-----~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
|. .. +|. ... +.+..+++.. +.||...+||++++++.++...|||
T Consensus 149 ~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GAD 226 (263)
T CHL00200 149 LLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNIN 226 (263)
T ss_pred EEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCC
Confidence 00 00 111 111 2234444433 7999999999999999999999999
Q ss_pred EEEEcHHHHHHhh
Q psy16780 144 MVFVGRPALWGLA 156 (202)
Q Consensus 144 ~V~ig~~~l~~~~ 156 (202)
+|.+||+++..+.
T Consensus 227 GvVVGSalv~~i~ 239 (263)
T CHL00200 227 GIVIGSACVQILL 239 (263)
T ss_pred EEEECHHHHHHHH
Confidence 9999999987553
No 106
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.74 E-value=9.4e-08 Score=84.75 Aligned_cols=102 Identities=28% Similarity=0.291 Sum_probs=75.5
Q ss_pred cccHHHHHHHHHhcC--CCEEEEecc---------C----HHHHHHHHHcC-CcEEEeeccCcCC---CCCccc--hHHH
Q psy16780 50 TINWSDVTWLKTITK--LPIVLKGIL---------T----AEDAKIGVEMG-ASAIMVSNHGGRQ---LDYVPA--SIEA 108 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~--~Pv~vK~~~---------~----~~~a~~l~~aG-~d~I~v~~~gg~~---~~~~~~--~~~~ 108 (202)
.|..|+++++|+.++ .||.++++. + .+.++.+.+.| +|++.+++.+... .....+ ....
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 357889999999984 589999872 2 24478889999 7999998743211 111101 1122
Q ss_pred HHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 109 LPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 109 l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
...++... ++|+|++|+|++++.+.++++.| ||+|.+||+|+.
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 34455555 69999999999999999999998 999999999996
No 107
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.73 E-value=9.6e-08 Score=78.95 Aligned_cols=121 Identities=24% Similarity=0.327 Sum_probs=90.8
Q ss_pred CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------------------------
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH-------------------------------- 94 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~-------------------------------- 94 (202)
.++...+.++++.+.+.+|+.|.+- .+.+++++++.+|||.|.+...
T Consensus 58 gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g 137 (256)
T COG0107 58 GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDG 137 (256)
T ss_pred cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCC
Confidence 3566788999999999999999864 7899999999999999887411
Q ss_pred ----------CcCC---C------------------------CCc--cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHH
Q psy16780 95 ----------GGRQ---L------------------------DYV--PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF 135 (202)
Q Consensus 95 ----------gg~~---~------------------------~~~--~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ 135 (202)
||+. + |+. ..+++.++.+++.+ ++|||+|||..+.+|.+
T Consensus 138 ~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~ 215 (256)
T COG0107 138 ENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFV 215 (256)
T ss_pred CCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHH
Confidence 1110 0 111 13556677777777 89999999999999999
Q ss_pred HHHHhC-CCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780 136 KALALG-AKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGC 183 (202)
Q Consensus 136 kal~~G-Ad~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~ 183 (202)
+++..| ||++..++-|-+. . .-..+++.+|...|.
T Consensus 216 eaf~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 216 EAFTEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred HHHHhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 999987 9999988888763 2 223456666666554
No 108
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.73 E-value=1.3e-07 Score=78.90 Aligned_cols=101 Identities=27% Similarity=0.321 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------------------Cc-C----
Q psy16780 51 INWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------------------GG-R---- 97 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------------------gg-~---- 97 (202)
...+.|+++.+.+++|+.+.+- .+.++++.+.++|++.|+++.. .| .
T Consensus 60 ~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~ 139 (229)
T PF00977_consen 60 SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATN 139 (229)
T ss_dssp HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEET
T ss_pred hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEec
Confidence 3567899999999999999864 7899999999999999998631 01 0
Q ss_pred CC------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780 98 QL------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV 145 (202)
Q Consensus 98 ~~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V 145 (202)
.+ ++ ..++.+.+.++++.+ ++|+|++|||++.+|+.++...|+++|
T Consensus 140 gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gv 217 (229)
T PF00977_consen 140 GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGV 217 (229)
T ss_dssp TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEE
T ss_pred CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEE
Confidence 00 11 135677788887777 899999999999999999999999999
Q ss_pred EEcHHHHH
Q psy16780 146 FVGRPALW 153 (202)
Q Consensus 146 ~ig~~~l~ 153 (202)
.+|++|+.
T Consensus 218 ivg~al~~ 225 (229)
T PF00977_consen 218 IVGSALHE 225 (229)
T ss_dssp EESHHHHT
T ss_pred EEehHhhC
Confidence 99999974
No 109
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.72 E-value=1.1e-07 Score=84.25 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=76.0
Q ss_pred CccccHHHHHHHHHhc--CCCEEEEecc------------CH----HHHHHHHHcCCcEEEeeccCc-CCCCCccchHHH
Q psy16780 48 DETINWSDVTWLKTIT--KLPIVLKGIL------------TA----EDAKIGVEMGASAIMVSNHGG-RQLDYVPASIEA 108 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~--~~Pv~vK~~~------------~~----~~a~~l~~aG~d~I~v~~~gg-~~~~~~~~~~~~ 108 (202)
...|..++|+.||+.+ +.||.+|+.. ++ +.++.+.++|+|+|.++...- .... .......
T Consensus 193 R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-~~~~~~~ 271 (361)
T cd04747 193 RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEF-EGSELNL 271 (361)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCc-CccchhH
Confidence 3456788999999998 5899999862 22 235567899999999876321 1111 1113344
Q ss_pred HHHHHHHhCCCcEEEEecCC------------------CCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 109 LPEIAKAVGHKVDVYLDGGV------------------RYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 109 l~~i~~~~~~~ipiia~GGI------------------~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
...+++.+ ++||+++|+| ++++++.++++.| ||+|++||+++.
T Consensus 272 ~~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 272 AGWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 45566666 7999999999 6999999999976 999999999986
No 110
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.72 E-value=1.6e-07 Score=84.50 Aligned_cols=78 Identities=27% Similarity=0.350 Sum_probs=57.2
Q ss_pred CHHHHHHHHHcC-CcEEEeec-cCcCCCCCccchHHHHHHHH---HHh------CCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 74 TAEDAKIGVEMG-ASAIMVSN-HGGRQLDYVPASIEALPEIA---KAV------GHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 74 ~~~~a~~l~~aG-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
|.++|+.+.+.| +|.|++.. .||+. + ..++...++.+. +.+ ..++||++.|||.|+.++..++++||
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGA 242 (418)
T cd04742 165 TEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGA 242 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCC
Confidence 667777777777 59999874 24432 1 123334444443 333 12599999999999999999999999
Q ss_pred CEEEEcHHHHH
Q psy16780 143 KMVFVGRPALW 153 (202)
Q Consensus 143 d~V~ig~~~l~ 153 (202)
++|++||.|+.
T Consensus 243 d~V~~GT~fla 253 (418)
T cd04742 243 DFIVTGSINQC 253 (418)
T ss_pred cEEeeccHHHh
Confidence 99999999996
No 111
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.72 E-value=3e-07 Score=76.92 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=73.8
Q ss_pred ccCcccc----HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCC
Q psy16780 46 QLDETIN----WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 46 ~~d~~~~----~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.+|++.. .+.+++.++.+ ++-++.=...++..++++.++|++.|-.-+. -|++ .+..+.+.+..+++..
T Consensus 99 i~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~-- 174 (248)
T cd04728 99 IGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA-- 174 (248)
T ss_pred ecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--
Confidence 3455543 33444444443 3333311346899999999999999954221 1222 2345677788887764
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++|||+.|||.+++|+.+++++|||+|++++++..
T Consensus 175 ~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 79999999999999999999999999999999874
No 112
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.72 E-value=1.1e-07 Score=91.88 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=77.2
Q ss_pred ccccHHHHHHHHHhc--CCCEEEEecc--------CH----HHHHHHHHcCCcEEEeeccCc-CCC--CCc-cchHHHHH
Q psy16780 49 ETINWSDVTWLKTIT--KLPIVLKGIL--------TA----EDAKIGVEMGASAIMVSNHGG-RQL--DYV-PASIEALP 110 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~--~~Pv~vK~~~--------~~----~~a~~l~~aG~d~I~v~~~gg-~~~--~~~-~~~~~~l~ 110 (202)
..+..++++.||+.+ ++||.+|++. +. +.++.+.++|+|.|.|+...- ... ..+ ........
T Consensus 601 ~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 601 LRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred hHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHH
Confidence 455778999999987 5899999872 22 456888999999999975211 110 011 11223345
Q ss_pred HHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 111 ~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
++++.+ ++||+++|+|++++++.++++.| ||+|++||+++.
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 666666 79999999999999999999976 999999999996
No 113
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.71 E-value=1.2e-07 Score=83.71 Aligned_cols=103 Identities=20% Similarity=0.075 Sum_probs=75.7
Q ss_pred ccccHHHHHHHHHhc--CCCEEEEec--------cCH----HHHHHHHHcCCcEEEeecc--CcCCC-C---Cccc-hHH
Q psy16780 49 ETINWSDVTWLKTIT--KLPIVLKGI--------LTA----EDAKIGVEMGASAIMVSNH--GGRQL-D---YVPA-SIE 107 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--------~~~----~~a~~l~~aG~d~I~v~~~--gg~~~-~---~~~~-~~~ 107 (202)
..+..++++.||+.+ ++||.+|+. .+. +.++.+.++|+|+|.|+.. ..+.. . .... ...
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~ 266 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW 266 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence 566788999999998 456777765 133 4467888999999999652 11111 0 1111 123
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 108 ~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
...++++.+ ++||+++|++++++++.++++.| +|+|++||+++.
T Consensus 267 ~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 267 ATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 456677776 89999999999999999999986 999999999986
No 114
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.68 E-value=1.9e-07 Score=84.52 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=56.8
Q ss_pred CHHHHHHHHHcC-CcEEEeec-cCcCCCCCccchHHHHHHHH---HHh------CCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 74 TAEDAKIGVEMG-ASAIMVSN-HGGRQLDYVPASIEALPEIA---KAV------GHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 74 ~~~~a~~l~~aG-~d~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
|+++|+.+.+.| +|.|++.. .||.. +..++...++.+. +.+ ..++||++.|||.|+.++..++++||
T Consensus 170 t~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGA 247 (444)
T TIGR02814 170 TREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGA 247 (444)
T ss_pred CHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 445566666666 59998863 24432 1234445555553 333 22699999999999999999999999
Q ss_pred CEEEEcHHHHHH
Q psy16780 143 KMVFVGRPALWG 154 (202)
Q Consensus 143 d~V~ig~~~l~~ 154 (202)
++|++||.|+..
T Consensus 248 dgV~~GT~flat 259 (444)
T TIGR02814 248 DFIVTGSVNQCT 259 (444)
T ss_pred cEEEeccHHHhC
Confidence 999999999963
No 115
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.67 E-value=5.2e-07 Score=75.57 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=73.1
Q ss_pred ccCcccc----HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCC
Q psy16780 46 QLDETIN----WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 46 ~~d~~~~----~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.+|+... .+.+++.++.+ +.-++-=...++..++++.++|++.|-.-+. -|+. .+..+.+.+..+++..
T Consensus 99 i~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~-- 174 (250)
T PRK00208 99 IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA-- 174 (250)
T ss_pred ecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--
Confidence 3455543 33455544443 3333311347899999999999999954221 1222 1344567788877764
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++|||+.|||.+++|+.+++++|||+|++++++..
T Consensus 175 ~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 175 DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 79999999999999999999999999999999874
No 116
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.65 E-value=1.6e-07 Score=83.37 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=73.2
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEE
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipii 123 (202)
.+|+...++++.+++. .++|.++.. ...+.++.+.++|+|.|+++++...+.+.+.. ++..+.++.+.. ++|||
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVI 191 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVI 191 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEE
Confidence 3666677788888875 555555543 24578899999999999997643223333222 455566655555 79999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 124 LDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 124 a~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+ |+|.|.+++.+++.+|||+|++|+
T Consensus 192 a-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 192 V-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 9 999999999999999999999996
No 117
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.62 E-value=7.4e-07 Score=74.46 Aligned_cols=103 Identities=25% Similarity=0.227 Sum_probs=78.7
Q ss_pred ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC-------------cC-C----CC---C-----
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG-------------GR-Q----LD---Y----- 101 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g-------------g~-~----~~---~----- 101 (202)
.....+.|+++.+.+.+|+.+.+- .+.++++.+.++|++.++++... |. . +| +
T Consensus 63 ~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~ 142 (233)
T cd04723 63 RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKP 142 (233)
T ss_pred CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccc
Confidence 334577999999988999999864 78999999999999999886421 10 0 00 0
Q ss_pred -------------------------------ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 102 -------------------------------VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 102 -------------------------------~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
..++.+.+.++.+.. .+|++++|||++.+|+.+++.+||+.|.+|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 143 TDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASA 220 (233)
T ss_pred cCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehH
Confidence 012334455555544 79999999999999999999999999999999
Q ss_pred HHH
Q psy16780 151 ALW 153 (202)
Q Consensus 151 ~l~ 153 (202)
++.
T Consensus 221 l~~ 223 (233)
T cd04723 221 LHD 223 (233)
T ss_pred HHc
Confidence 875
No 118
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.62 E-value=2.5e-06 Score=72.42 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=82.5
Q ss_pred hhhccCccccHHHHHHHH-HhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780 43 ITSQLDETINWSDVTWLK-TITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G---- 96 (202)
Q Consensus 43 ~~~~~d~~~~~~~i~~i~-~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g---- 96 (202)
+....+.+..++.++++| +..++|+++=.=.+ ....+.+.++|+|++++-.-+ |
T Consensus 67 L~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 67 LAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 444556667889999999 55689976422111 245788999999998884200 0
Q ss_pred ------CC-------------------CC--Cc-----cchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 97 ------RQ-------------------LD--YV-----PASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 97 ------~~-------------------~~--~~-----~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
+. .. .+ +... +.+..+++.. ++||+.-+||++++|+.+++.. ||
T Consensus 147 ~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-AD 223 (258)
T PRK13111 147 FLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-AD 223 (258)
T ss_pred EEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CC
Confidence 00 00 11 1222 2566666644 7999999999999999998875 99
Q ss_pred EEEEcHHHHHHhhh--cChHHHHHHHHHHH
Q psy16780 144 MVFVGRPALWGLAH--SGKSGVRKVLDILI 171 (202)
Q Consensus 144 ~V~ig~~~l~~~~~--~G~~~v~~~i~~l~ 171 (202)
+|.+||+|+..+.. .+.+.+.++++.++
T Consensus 224 GviVGSaiv~~~~~~~~~~~~~~~~~~~l~ 253 (258)
T PRK13111 224 GVIVGSALVKIIEENPEALEALAAFVKELK 253 (258)
T ss_pred EEEEcHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999986533 23344444444443
No 119
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.61 E-value=3e-07 Score=77.63 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
.+.++.+.++|+|.|.+++... ......++++.+.++++.. ++|||++|||++.+|+.+++..| |++|++|++|..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 4667899999999999965321 1112345777888888776 79999999999999999999988 999999999875
No 120
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.61 E-value=3.9e-07 Score=77.12 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=76.2
Q ss_pred Cccc---cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccC----------------c-----------
Q psy16780 48 DETI---NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHG----------------G----------- 96 (202)
Q Consensus 48 d~~~---~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~g----------------g----------- 96 (202)
|+.+ +++.+..+++.+++|+..|-. .++.++..+..+|||+|.+...- |
T Consensus 90 e~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~ 169 (254)
T PF00218_consen 90 EPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE 169 (254)
T ss_dssp -SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence 5554 688999999999999999964 78999999999999998875320 0
Q ss_pred -----------------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 97 -----------------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 97 -----------------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|.+..-..+.....++...++.++.+|+.+||.+.+|+.++...|+|+|.||++|+.
T Consensus 170 El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~ 243 (254)
T PF00218_consen 170 ELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMR 243 (254)
T ss_dssp HHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHT
T ss_pred HHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhC
Confidence 001111223334455555566678999999999999999999999999999999996
No 121
>PLN02591 tryptophan synthase
Probab=98.60 E-value=3.3e-06 Score=71.38 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=78.6
Q ss_pred HhhhccCccccHHHHHHHHHhcCCCEEEEeccC-------HHHHHHHHHcCCcEEEeeccC--------------c----
Q psy16780 42 YITSQLDETINWSDVTWLKTITKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNHG--------------G---- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~g--------------g---- 96 (202)
.+....+.+..++.++++|+..++|+++=.=.+ ....+.+.++|+|++++-.-. |
T Consensus 56 AL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 56 ALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence 455566777789999999988889976422111 245788899999998873100 0
Q ss_pred ------CC----------------------CCCc----cchHH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 97 ------RQ----------------------LDYV----PASIE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 97 ------~~----------------------~~~~----~~~~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
+. ..+. +.... .+..+++. .++||+.--||++++|+.+++..|||
T Consensus 136 ~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GAD 213 (250)
T PLN02591 136 LLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGAD 213 (250)
T ss_pred EEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCC
Confidence 00 0011 12222 35556554 38999998899999999999999999
Q ss_pred EEEEcHHHHHHh
Q psy16780 144 MVFVGRPALWGL 155 (202)
Q Consensus 144 ~V~ig~~~l~~~ 155 (202)
+|.+||++++.+
T Consensus 214 GvIVGSalVk~i 225 (250)
T PLN02591 214 GVIVGSAMVKAL 225 (250)
T ss_pred EEEECHHHHHhh
Confidence 999999998754
No 122
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.60 E-value=5.4e-07 Score=75.34 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.++|++.+.+....+ .....+++++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 4778999999999988876432 1123355777888888877 79999999999999999999999999999998874
No 123
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.57 E-value=1.1e-06 Score=73.99 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=77.4
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--------------C-----------cC----CC--
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--------------G-----------GR----QL-- 99 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--------------g-----------g~----~~-- 99 (202)
..+.|++|.+.+ .|+.+.+- .+.++++.+.++|++.|+++.. + |. .+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 567899998887 79999864 7899999999999999888531 0 10 00
Q ss_pred ----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh-----C-CC
Q psy16780 100 ----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL-----G-AK 143 (202)
Q Consensus 100 ----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~-----G-Ad 143 (202)
++ ..++.+.+.++++.. ++|||++||+++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 01 125666777776654 7999999999999999999987 6 99
Q ss_pred EEEEcHHHHH
Q psy16780 144 MVFVGRPALW 153 (202)
Q Consensus 144 ~V~ig~~~l~ 153 (202)
+|.+|++|+.
T Consensus 219 gvivg~Al~~ 228 (241)
T PRK14114 219 GVIVGRAFLE 228 (241)
T ss_pred EEEEehHHHC
Confidence 9999999875
No 124
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.55 E-value=7.3e-07 Score=75.13 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=79.0
Q ss_pred Cccc---cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc----------------Cc-----------
Q psy16780 48 DETI---NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH----------------GG----------- 96 (202)
Q Consensus 48 d~~~---~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~----------------gg----------- 96 (202)
||.+ ..+.++.+++.+++||..|-- .++.++..+...|+|+|-+.-. -|
T Consensus 88 d~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~e 167 (254)
T COG0134 88 DPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEE 167 (254)
T ss_pred CccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHH
Confidence 5555 789999999999999999964 6777777777777777654211 00
Q ss_pred -----------------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 97 -----------------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 97 -----------------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
|.+..-..+.+....+...++.+.-+|..+||++++|+.+....|||++.||+++++.
T Consensus 168 El~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 168 ELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 1111112234445556666667788999999999999999999999999999999963
No 125
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.53 E-value=1.1e-06 Score=74.04 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+....... .....+++.++++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 477889999999999997754321 23356788888888877 79999999999999999999999999999998875
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.53 E-value=4.9e-06 Score=69.90 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=79.1
Q ss_pred HhhhccCccccHHHHHHHHHhcCCCEEE--Eecc-----CHHHHHHHHHcCCcEEEeec-c--------------C----
Q psy16780 42 YITSQLDETINWSDVTWLKTITKLPIVL--KGIL-----TAEDAKIGVEMGASAIMVSN-H--------------G---- 95 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~v--K~~~-----~~~~a~~l~~aG~d~I~v~~-~--------------g---- 95 (202)
.+....+.+...+.++++|+..++|+.+ +... -...++.+.++|+|++++.. + |
T Consensus 54 al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 54 ALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 3555666778899999999988899765 3221 14568889999999999821 0 0
Q ss_pred -----cCC-----------C-----------CCcc----c-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 96 -----GRQ-----------L-----------DYVP----A-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 96 -----g~~-----------~-----------~~~~----~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
.+. . .++. + ..+.+.++++.. ++||+..|||++.+++.++... ||
T Consensus 134 ~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-AD 210 (242)
T cd04724 134 FLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-AD 210 (242)
T ss_pred EEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CC
Confidence 010 0 0111 1 223455665543 7999999999999999999999 99
Q ss_pred EEEEcHHHHHHhh
Q psy16780 144 MVFVGRPALWGLA 156 (202)
Q Consensus 144 ~V~ig~~~l~~~~ 156 (202)
+|.+||+++..+.
T Consensus 211 gvVvGSaiv~~~~ 223 (242)
T cd04724 211 GVIVGSALVKIIE 223 (242)
T ss_pred EEEECHHHHHHHH
Confidence 9999999987653
No 127
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.52 E-value=9.9e-07 Score=78.50 Aligned_cols=103 Identities=8% Similarity=-0.023 Sum_probs=72.4
Q ss_pred CccccHHHHHHHHHhcC--CCEEEEecc----------CHHH----HHHHHHcCCcEEEeeccCcCCC----CC--ccch
Q psy16780 48 DETINWSDVTWLKTITK--LPIVLKGIL----------TAED----AKIGVEMGASAIMVSNHGGRQL----DY--VPAS 105 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~--~Pv~vK~~~----------~~~~----a~~l~~aG~d~I~v~~~gg~~~----~~--~~~~ 105 (202)
...|..++++.||+.++ +||.+|+.. +.++ ++.+.+ .+|.+.++...-... .. ....
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence 45667899999999984 567777651 2332 344544 489999875311000 00 0112
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 106 ~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
++....+++.+ ++|||++|||++++++.++++.| ||+|++||+++.
T Consensus 278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 44556677766 79999999999999999999987 999999999996
No 128
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.52 E-value=3.2e-06 Score=68.79 Aligned_cols=79 Identities=25% Similarity=0.211 Sum_probs=59.7
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCC--c-cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDY--V-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~--~-~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
.+.+++..+.+.|+|+|.++.-.-+.... . ...++.+.++++.. +++||++.||| +.+++.+++.+||++|.+||
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 57788999999999999886421111111 1 12367788887766 24999999999 78999999999999999999
Q ss_pred HHHH
Q psy16780 150 PALW 153 (202)
Q Consensus 150 ~~l~ 153 (202)
.+..
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 9764
No 129
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=2.5e-06 Score=69.56 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC--CCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ--LDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
+++++ +..--++.--+.+.|++..+.++|+|+|--.-+|.|. .....|++..++++.+ . ..+||+.|.+.|++
T Consensus 119 ~i~~~--k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~ 193 (229)
T COG3010 119 LIARI--KYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPE 193 (229)
T ss_pred HHHHh--hcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHH
Confidence 45542 2344566667789999999999999988543333332 1223467777887766 3 89999999999999
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q psy16780 133 DVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 133 D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.+++..||++|.+|+++-+
T Consensus 194 ~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 194 QAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred HHHHHHHhCCeEEEECcccCC
Confidence 999999999999999998864
No 130
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.50 E-value=9.1e-06 Score=68.31 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 54 SDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
+.++.+++ .++..++=.. .+.+.++...+..-..+.++-.+|+.........+.+.++++.. .+.||+..|||++.
T Consensus 120 ~~~~~~~~-~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~ 197 (244)
T PRK13125 120 KYVEIIKN-KGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSP 197 (244)
T ss_pred HHHHHHHH-cCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCH
Confidence 45555554 3666665443 34677787777765555554344442211112233566666554 25789999999999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHH
Q psy16780 132 TDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI 171 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~ 171 (202)
+++.+++.+|||++.+||.++..+..++.+...++++.++
T Consensus 198 e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~ 237 (244)
T PRK13125 198 EDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIR 237 (244)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999986443333344444444443
No 131
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.49 E-value=1.3e-06 Score=72.92 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccC-------------cCC---C---------CC----
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHG-------------GRQ---L---------DY---- 101 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~g-------------g~~---~---------~~---- 101 (202)
..+.++++.+.+++||++.+ +.+.++++.+.+.|++.++++... |.- + ++
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 46788999888999999885 588999999999999999885321 000 0 00
Q ss_pred -ccchHHHHH------------------------HHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 102 -VPASIEALP------------------------EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 102 -~~~~~~~l~------------------------~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.....+.+. ++.+.+ .++|||++|||++.+|+.++..+|+++|.+|++|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 001111111 122221 369999999999999999999999999999999975
No 132
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.49 E-value=1.9e-06 Score=72.52 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=75.9
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc---------------------------CcC--C---
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH---------------------------GGR--Q--- 98 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~---------------------------gg~--~--- 98 (202)
..+.|+++.+.+++|+.+.+ +.+.++++.+.+.|++.|+++.. .|. .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 46789999999999999985 57999999999999999988531 010 0
Q ss_pred --C-----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---HhCC
Q psy16780 99 --L-----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL---ALGA 142 (202)
Q Consensus 99 --~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal---~~GA 142 (202)
+ ++ ..++.+.+.++++.. ++|||++||+++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 01 124555555555544 79999999999999999874 3599
Q ss_pred CEEEEcHHHHH
Q psy16780 143 KMVFVGRPALW 153 (202)
Q Consensus 143 d~V~ig~~~l~ 153 (202)
++|.+|++|+.
T Consensus 220 ~gvivg~Al~~ 230 (243)
T TIGR01919 220 SVAIGGKLLYA 230 (243)
T ss_pred eEEEEhHHHHc
Confidence 99999999874
No 133
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.48 E-value=9.9e-07 Score=72.87 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=78.8
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
.++.+.+.+.|+.+++.+.-++.+|.+ ++-+. .+.+.++|+|+|.-|.+. ..+..+.+.+.-+++.+
T Consensus 105 ~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf----~~~gAT~edv~lM~~~v 180 (228)
T COG0274 105 SGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF----SAGGATVEDVKLMKETV 180 (228)
T ss_pred cCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHh
Confidence 677788889999999998766888876 33332 456789999999986532 23455777777677777
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
++++.|=++|||||.+|+.+++.+||+-++..+.
T Consensus 181 g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 181 GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred ccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 7789999999999999999999999877766553
No 134
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.48 E-value=1.9e-06 Score=72.78 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+....+. ......+++.+.++++.+ ++||++.|||++.+|+.+++.+||+.|.+|++++.
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 37788999999999999774321 123456778888888877 79999999999999999999999999999999875
No 135
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.48 E-value=1.9e-06 Score=71.55 Aligned_cols=97 Identities=20% Similarity=0.131 Sum_probs=65.7
Q ss_pred HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
.+.++.-+..+ +.-|+-=...++-.+++++++|+..|---+. -|+. .|..+...++.+++.+ ++|||.++||.
T Consensus 110 ~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg--~Gi~n~~~l~~i~~~~--~vPvIvDAGiG 185 (247)
T PF05690_consen 110 IETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--RGIQNPYNLRIIIERA--DVPVIVDAGIG 185 (247)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---
T ss_pred hHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccC--cCCCCHHHHHHHHHhc--CCcEEEeCCCC
Confidence 34454444433 4444433346789999999999999986543 1221 2455777888888888 89999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++.|+.+++++|||+|.+.+++..
T Consensus 186 ~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 186 TPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CHHHHHHHHHcCCceeehhhHHhc
Confidence 999999999999999999998864
No 136
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.48 E-value=5.8e-07 Score=79.08 Aligned_cols=102 Identities=27% Similarity=0.299 Sum_probs=75.5
Q ss_pred cccHHHHHHHHHhc--CCCEEEEecc--------C-H---HHHHHHHHcCCcEEEeeccCcCC-------CCC-cc--ch
Q psy16780 50 TINWSDVTWLKTIT--KLPIVLKGIL--------T-A---EDAKIGVEMGASAIMVSNHGGRQ-------LDY-VP--AS 105 (202)
Q Consensus 50 ~~~~~~i~~i~~~~--~~Pv~vK~~~--------~-~---~~a~~l~~aG~d~I~v~~~gg~~-------~~~-~~--~~ 105 (202)
.|..++|+.||+.+ +.||.+|++. + . +.++.+.++|+|.+.++...... ... .. ..
T Consensus 200 Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (341)
T PF00724_consen 200 RFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYN 279 (341)
T ss_dssp HHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchh
Confidence 44688999999987 6889999872 1 2 23677888999998776432110 011 11 12
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 106 ~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
......+++.+ ++|||++|||++++.+.++++.| ||+|++||+++.
T Consensus 280 ~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 280 LDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 34456667777 89999999999999999999988 999999999996
No 137
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.45 E-value=5.1e-06 Score=70.03 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=78.5
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--C--------------c------------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--G--------------G------------------ 96 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--g--------------g------------------ 96 (202)
+.+.++.+++.+++||+.|.. .++.++..+..+|||+|.+.-. + |
T Consensus 90 s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~ 169 (247)
T PRK13957 90 SLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD 169 (247)
T ss_pred CHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh
Confidence 788999999999999999975 7888888888899999987532 1 0
Q ss_pred ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
|.+..-..+.....++...++.+..+|+.+||.+++|+.++... +|+|.||+.++..
T Consensus 170 ~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 170 CGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 00011122334455666667777889999999999999987776 9999999999963
No 138
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.45 E-value=3.3e-06 Score=72.27 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=70.9
Q ss_pred cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC---CCcEEEEec
Q psy16780 52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG---HKVDVYLDG 126 (202)
Q Consensus 52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipiia~G 126 (202)
..+.++++|+..+ .+|.+ ++.+.++++.+.++|+|.|-+.+. +.+.+.++.+..+ +++.+.++|
T Consensus 168 i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsG 236 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASG 236 (273)
T ss_pred HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEEC
Confidence 3568899988775 45555 778999999999999999988663 4455555544332 468899999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
|| +++.+.++..+|+|.+.+|++..
T Consensus 237 gI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 237 NI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99 99999999999999999999765
No 139
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.44 E-value=1.9e-06 Score=71.08 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=72.4
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
.++.+...+.++++++.++ .+.+|.+ ++.+. ++.+.++|+|+|..+.+- ..+..+...+..+++.+
T Consensus 98 ~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf----~~~gat~~dv~~m~~~v 172 (211)
T TIGR00126 98 DGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGF----GAGGATVEDVRLMRNTV 172 (211)
T ss_pred CCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCC----CCCCCCHHHHHHHHHHh
Confidence 5667777889999998874 3344544 33333 466789999999986531 11234566666666667
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+++++|-++|||++.+++.+.+.+||+.++..+
T Consensus 173 ~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 173 GDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred ccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 678999999999999999999999999877644
No 140
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.44 E-value=9.3e-06 Score=66.76 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
...++++..+ ..+.|++.. +.+++++..+.+.|+|+|.+.-. ....++.+..+++.++.++|+++.||| +
T Consensus 92 ~~~~v~~~~~-~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~ 161 (206)
T PRK09140 92 TDPEVIRRAV-ALGMVVMPG-VATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGGV-T 161 (206)
T ss_pred CCHHHHHHHH-HCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECCC-C
Confidence 3344555544 557888875 88999999999999999998321 122356677776665336999999999 8
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+++.+.+++||++|.++|.+..
T Consensus 162 ~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 162 PENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHHCCCeEEEEehHhcc
Confidence 89999999999999999999874
No 141
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=98.42 E-value=2.7e-06 Score=77.59 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=91.4
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc--Cc--------------------------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH--GG-------------------------------- 96 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~--gg-------------------------------- 96 (202)
+.+.++.+|+.+++||..|-. .++.++..+..+|||+|-+... +.
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~ 177 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA 177 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence 788999999999999999964 7788888888888888776421 00
Q ss_pred ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHH
Q psy16780 97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKV 166 (202)
Q Consensus 97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~ 166 (202)
|.+..-..+.....++...+++++.+|+.+||+|++|+..+ ..|||+|.||++++.. +...+.
T Consensus 178 ~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~ 250 (454)
T PRK09427 178 LGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELA 250 (454)
T ss_pred CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHH
Confidence 00111122334445566667778889999999999999886 4589999999999963 222233
Q ss_pred HHHHHHHHHHHHHHhCCCCHHhhhh
Q psy16780 167 LDILINEFDQALALSGCTSVGEIQR 191 (202)
Q Consensus 167 i~~l~~~L~~~m~~~G~~~i~el~~ 191 (202)
++.+.. ....-||.++.++.+.
T Consensus 251 ~~~L~~---~~vKICGit~~eda~~ 272 (454)
T PRK09427 251 VRKLIL---GENKVCGLTRPQDAKA 272 (454)
T ss_pred HHHHhc---cccccCCCCCHHHHHH
Confidence 333322 3456799999888763
No 142
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.41 E-value=9.8e-06 Score=66.97 Aligned_cols=95 Identities=19% Similarity=0.249 Sum_probs=73.4
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.+..++++..+ ..++|++- ++.|+.++..+.++|+|+|.+.-.. ......++.++..+ +.+|++++||
T Consensus 94 sP~~~~~v~~~~~-~~~i~~iP-G~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip~~atGG 163 (213)
T PRK06552 94 SPSFNRETAKICN-LYQIPYLP-GCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVNVMVTGG 163 (213)
T ss_pred CCCCCHHHHHHHH-HcCCCEEC-CcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCEEEEECC
Confidence 4555556777665 45889886 6789999999999999999984311 11245566665555 3699999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|. .+++.+.+++||++|.+|+.+..
T Consensus 164 I~-~~N~~~~l~aGa~~vavgs~l~~ 188 (213)
T PRK06552 164 VN-LDNVKDWFAAGADAVGIGGELNK 188 (213)
T ss_pred CC-HHHHHHHHHCCCcEEEEchHHhC
Confidence 97 69999999999999999999974
No 143
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.40 E-value=4.5e-06 Score=74.13 Aligned_cols=99 Identities=12% Similarity=-0.069 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHhcC-CCEEEEec-----------cCHHH-----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780 50 TINWSDVTWLKTITK-LPIVLKGI-----------LTAED-----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~-~Pv~vK~~-----------~~~~~-----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i 112 (202)
.|..|+|++||+.++ -+|.+|++ .+.++ ++.+.+.|+|+|.|+.... ....+........+
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~--~~~~~~~~~~~~~i 287 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW--AGGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc--cCCccccHHHHHHH
Confidence 346789999999883 25888874 13333 5778889999999986311 01111122333556
Q ss_pred HHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 113 AKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 113 ~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
++.+ ++||+++|++ +++.+.++++.| ||+|++||+++.
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 6666 6899999996 899999999998 999999999996
No 144
>KOG2333|consensus
Probab=98.39 E-value=4.8e-06 Score=75.30 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHhc-CCCEEEEecc--------CHHHHHHHH-HcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 51 INWSDVTWLKTIT-KLPIVLKGIL--------TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 51 ~~~~~i~~i~~~~-~~Pv~vK~~~--------~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
...+++......+ ++|+.||++. ..+.+..+. +-|+++|+++|+...|.+....+|+.+.++++.+...+
T Consensus 376 rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l 455 (614)
T KOG2333|consen 376 RLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSAL 455 (614)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCc
Confidence 3455666666666 4699999972 134455555 88999999988776677777889999999988887679
Q ss_pred EEEEecCCCCHHHHHHHHHhC--CCEEEEcH-----HHHHH
Q psy16780 121 DVYLDGGVRYGTDVFKALALG--AKMVFVGR-----PALWG 154 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~G--Ad~V~ig~-----~~l~~ 154 (202)
|+|++|.|-|.+|-.+.+..+ .+.||||| ||+|.
T Consensus 456 ~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 456 PLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred eeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 999999999999999888865 89999999 66664
No 145
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.39 E-value=4.5e-06 Score=70.09 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 53 WSDVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 53 ~~~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
.+.++.-+..+ +.-|..=...++-.++++.++|+..|---+. -|+. .|..+...|+.+.+.. ++||+.++||.
T Consensus 124 ~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg--~Gl~n~~~l~~i~e~~--~vpVivdAGIg 199 (267)
T CHL00162 124 IGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSG--QGLQNLLNLQIIIENA--KIPVIIDAGIG 199 (267)
T ss_pred HHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCcC
Confidence 44555544443 3333332336788999999999999876443 1221 2355777788777754 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+++|+.+++++|||+|.+.|++..
T Consensus 200 t~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 200 TPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred CHHHHHHHHHcCCCEEeecceeec
Confidence 999999999999999999999875
No 146
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.35 E-value=6.9e-06 Score=78.30 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=79.9
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc--C--------------c------------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH--G--------------G------------------ 96 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~--g--------------g------------------ 96 (202)
+.+.+..+|+.+++||..|. +.++.++..+..+|||+|.+... + |
T Consensus 99 s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~ 178 (695)
T PRK13802 99 SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIA 178 (695)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh
Confidence 78999999999999999997 47888888888899999887532 0 0
Q ss_pred ----------CCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 97 ----------RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 97 ----------~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
|.+..-..+.....++...++.++.+|+.+||++++|+..+..+|||+|.||++++..
T Consensus 179 ~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 179 AGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred CCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 0011112234444556666667788999999999999999999999999999998863
No 147
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.33 E-value=6.4e-06 Score=67.33 Aligned_cols=97 Identities=27% Similarity=0.308 Sum_probs=68.2
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGI-----LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
.++.+...+.+.++++.+. ++.+|.+ ++.+. ++.+.++|+|+|..+.+ +.....+...+..+++.+
T Consensus 97 ~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG----~~~~~at~~~v~~~~~~~ 171 (203)
T cd00959 97 SGDYEAVYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG----FGPGGATVEDVKLMKEAV 171 (203)
T ss_pred CCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC----CCCCCCCHHHHHHHHHHh
Confidence 3455667778888888874 3334433 34333 56789999999998632 111234555555555555
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 117 ~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
+.++||-++|||+|.+++.+.+.+||+.++.
T Consensus 172 ~~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 172 GGRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 5689999999999999999999999987653
No 148
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.32 E-value=8.8e-06 Score=67.38 Aligned_cols=76 Identities=28% Similarity=0.345 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+..-.+. ..+..++.+.+.++++.+ .+||++.|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46688889999999998764222 123346778888887776 79999999999999999999999999999999875
No 149
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.31 E-value=1.3e-05 Score=63.71 Aligned_cols=87 Identities=24% Similarity=0.182 Sum_probs=63.4
Q ss_pred CCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC-C--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q psy16780 64 KLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD-Y--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139 (202)
Q Consensus 64 ~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~ 139 (202)
+.+..+... .+.++++.+.+.|+|+|.++....+... + .+..++.+.++++.. ++||++.|||. .+++.+++.
T Consensus 93 ~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~ 169 (196)
T cd00564 93 GPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLA 169 (196)
T ss_pred CCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHH
Confidence 334444443 5778899999999999998643111111 1 234566777776654 79999999995 799999999
Q ss_pred hCCCEEEEcHHHHH
Q psy16780 140 LGAKMVFVGRPALW 153 (202)
Q Consensus 140 ~GAd~V~ig~~~l~ 153 (202)
+||++|.+|+.++.
T Consensus 170 ~Ga~~i~~g~~i~~ 183 (196)
T cd00564 170 AGADGVAVISAITG 183 (196)
T ss_pred cCCCEEEEehHhhc
Confidence 99999999999874
No 150
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.31 E-value=8.4e-06 Score=67.49 Aligned_cols=76 Identities=34% Similarity=0.416 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|+|.+.+....+. ..+...+++.+.++++.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 47788899999999999753221 122345677888888877 79999999999999999999999999999998764
No 151
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.30 E-value=7.8e-06 Score=66.09 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 54 SDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
+.++.. +..+.|+++ ++.|++++..+.++|+|+|.+... .+...+.++.+++.+ +++|+++.||| +.++
T Consensus 88 ~~~~~~-~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~-~~~p~~a~GGI-~~~n 156 (190)
T cd00452 88 EVVKAA-NRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPF-PQVRFMPTGGV-SLDN 156 (190)
T ss_pred HHHHHH-HHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhC-CCCeEEEeCCC-CHHH
Confidence 444444 446888887 556999999999999999998431 112345566665544 35999999999 9999
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q psy16780 134 VFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 134 ~~kal~~GAd~V~ig~~~l~ 153 (202)
+.+.+.+||++|.+++.+..
T Consensus 157 ~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 157 AAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred HHHHHHCCCEEEEEchhcch
Confidence 99999999999999998763
No 152
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.30 E-value=1.1e-05 Score=68.51 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=75.2
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc---C---------------cCC---------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH---G---------------GRQ--------------- 98 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~---g---------------g~~--------------- 98 (202)
..+.|++|++ +++||.+.+-...++++.++++||+.|+++.. . |.+
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 4778999998 88999999764459999999999999998631 0 100
Q ss_pred ------C------------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 99 ------L------------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 99 ------~------------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
+ |+ ..++.+.+.++++.. ++|||++|||++.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 0 11 124555666666654 7999999999999999999987
Q ss_pred --CCCEEEEcHHHH
Q psy16780 141 --GAKMVFVGRPAL 152 (202)
Q Consensus 141 --GAd~V~ig~~~l 152 (202)
|...|.+|++++
T Consensus 229 g~g~~gvIvGkAl~ 242 (262)
T PLN02446 229 GGGRVDVTVGSALD 242 (262)
T ss_pred CCCCEEEEEEeeHH
Confidence 468899999984
No 153
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.27 E-value=1e-05 Score=75.25 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA-LGAKMVFVGRPALW 153 (202)
Q Consensus 105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~-~GAd~V~ig~~~l~ 153 (202)
+.+.+..+++.+ ++|||+|||+.+.+|+.+++. .||+++..++.|-+
T Consensus 470 d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 470 DIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 344455555555 799999999999999999998 67999999998876
No 154
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.26 E-value=5.6e-06 Score=68.73 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 103 ~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.++.+.+.++++.. ++|+|++|||++.+|+.++...||++|.+|++|+.
T Consensus 170 G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 170 GPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 35778888887766 79999999999999999988899999999999875
No 155
>KOG0399|consensus
Probab=98.24 E-value=7.4e-06 Score=80.51 Aligned_cols=141 Identities=24% Similarity=0.213 Sum_probs=100.9
Q ss_pred cHHHHHHHHHh----c-CCCEEEEeccCH---HHHHHHHHcCCcEEEeecc-CcCCCC---C---ccchHHH-HHHHHHH
Q psy16780 52 NWSDVTWLKTI----T-KLPIVLKGILTA---EDAKIGVEMGASAIMVSNH-GGRQLD---Y---VPASIEA-LPEIAKA 115 (202)
Q Consensus 52 ~~~~i~~i~~~----~-~~Pv~vK~~~~~---~~a~~l~~aG~d~I~v~~~-gg~~~~---~---~~~~~~~-l~~i~~~ 115 (202)
+.|.++++.-. - +..|.||++... -.|.-..++.||.|.|+|| |||..+ + ..-+|+. +.+.++.
T Consensus 1081 SIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQt 1160 (2142)
T KOG0399|consen 1081 SIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQT 1160 (2142)
T ss_pred cHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhH
Confidence 45555554322 1 457888987432 2244566788999999998 555422 1 1224443 5554443
Q ss_pred -----hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhc--------------------------C-hHHH
Q psy16780 116 -----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS--------------------------G-KSGV 163 (202)
Q Consensus 116 -----~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~--------------------------G-~~~v 163 (202)
++.++-+-.+|+++|+.|+.-|..+||+-.++++.-+.++.|. | ++.|
T Consensus 1161 Lv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Pehv 1240 (2142)
T KOG0399|consen 1161 LVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHV 1240 (2142)
T ss_pred HhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHH
Confidence 4567888899999999999999999999999999655443321 2 5678
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 164 RKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 164 ~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+++-.+.+|++.+|..+|+++++|+.+.
T Consensus 1241 VNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1241 VNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 89999999999999999999999999765
No 156
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.24 E-value=1.2e-05 Score=70.44 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=74.8
Q ss_pred Cccc---cHHHHHHHHHh-cCCCEEEEe-ccCHHHHHHHHHcCCcEEEeecc--C-------------------------
Q psy16780 48 DETI---NWSDVTWLKTI-TKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH--G------------------------- 95 (202)
Q Consensus 48 d~~~---~~~~i~~i~~~-~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~--g------------------------- 95 (202)
|+.+ +.+.++.+|+. +++||..|. +.++.++..+..+|||+|-+... .
T Consensus 161 d~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~ 240 (338)
T PLN02460 161 DEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDE 240 (338)
T ss_pred CcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4544 78999999998 999999997 46777777777778887665321 0
Q ss_pred ----------c--------CCCCCccchHHHHHHHHH-----Hh-CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780 96 ----------G--------RQLDYVPASIEALPEIAK-----AV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 96 ----------g--------~~~~~~~~~~~~l~~i~~-----~~-~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~ 151 (202)
| |.+..-..+.....++.. .+ +.++.+|+.+||++++|+..+..+|||+|.||..|
T Consensus 241 ~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsL 320 (338)
T PLN02460 241 REMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESL 320 (338)
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 0 001111122333334433 23 23566899999999999999999999999999999
Q ss_pred HH
Q psy16780 152 LW 153 (202)
Q Consensus 152 l~ 153 (202)
++
T Consensus 321 Mr 322 (338)
T PLN02460 321 VK 322 (338)
T ss_pred hC
Confidence 96
No 157
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.21 E-value=4.6e-05 Score=63.29 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=67.8
Q ss_pred HHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCC-CCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 56 VTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQL-DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 56 i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
+...|+..+--.+++.+ .+.+++..+.+.|+|+|.++.-.-+.. ...+...+.+.++++.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 45555554323455553 467888888899999999865311111 11223455666676665 7999999999 899
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q psy16780 133 DVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 133 D~~kal~~GAd~V~ig~~~l~ 153 (202)
++.+++.+||++|.+-|.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999874
No 158
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.21 E-value=2.3e-05 Score=65.52 Aligned_cols=99 Identities=17% Similarity=0.066 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeecc---------------CcCC-----------------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNH---------------GGRQ----------------- 98 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~---------------gg~~----------------- 98 (202)
..+.|+++.+....|+.+.+- .+.++++.+.+.|++.|+++.. |+..
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 357899998854459999864 7899999999999999988531 1100
Q ss_pred C-----------------------------CC--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 99 L-----------------------------DY--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 99 ~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
+ ++ ..++.+.+..+.+. ..|+|++|||++.+|+.++..+|+++|.+
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 0 00 01344444444332 34699999999999999999999999999
Q ss_pred cHHHHH
Q psy16780 148 GRPALW 153 (202)
Q Consensus 148 g~~~l~ 153 (202)
|++++.
T Consensus 218 g~Aly~ 223 (232)
T PRK13586 218 GMAFYL 223 (232)
T ss_pred ehhhhc
Confidence 999874
No 159
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.19 E-value=4.2e-05 Score=62.16 Aligned_cols=96 Identities=25% Similarity=0.221 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCCEEEEec--cC-HHHHHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LT-AEDAKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~-~~~a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
.+.++.+++ .++|+++-.. .+ .+.++.+.+.|+|.|.+.. |.. ...++...+.+.++++.++ ..++.++|||
T Consensus 92 ~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI 167 (206)
T TIGR03128 92 KGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI 167 (206)
T ss_pred HHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc
Confidence 456666665 5899988643 22 5788889999999998842 211 1122345556677766553 4677779999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 129 RYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+.+++.+++..||+.|.+||.++.
T Consensus 168 -~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 168 -NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred -CHHHHHHHHHcCCCEEEEeehhcC
Confidence 888999999999999999999764
No 160
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.19 E-value=2e-05 Score=66.17 Aligned_cols=75 Identities=28% Similarity=0.241 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|+|.+.+..-.+. .+...+.+.+.++.+.+ .+|+.+.|||+|.+|+.+++.+||+.|.+|+.++.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 47788889999998887543221 13346778888888877 79999999999999999999999999999998874
No 161
>KOG2334|consensus
Probab=98.18 E-value=1.2e-05 Score=71.61 Aligned_cols=106 Identities=26% Similarity=0.196 Sum_probs=84.9
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
-||+....++..+.+...+|+.+|++. +.+..+++.+.|+.++.|+++..-.....+++.+.+++++..++ .+
T Consensus 132 t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~-~V 210 (477)
T KOG2334|consen 132 TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQ-MV 210 (477)
T ss_pred cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhc-cc
Confidence 477777889999999999999999872 46778999999999999976432122234677888999888874 39
Q ss_pred EEEEecCCCC---HHHHHHHHH-hCCCEEEEcHHHHH
Q psy16780 121 DVYLDGGVRY---GTDVFKALA-LGAKMVFVGRPALW 153 (202)
Q Consensus 121 piia~GGI~~---~~D~~kal~-~GAd~V~ig~~~l~ 153 (202)
|||++||..+ +.|+.+... .|++.||++|...+
T Consensus 211 ~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 211 PVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred eEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 9999999998 888888776 69999999996554
No 162
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00016 Score=61.40 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=79.0
Q ss_pred HhhhccCccccHHHHHHHHHh-cCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780 42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG--- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg--- 96 (202)
.+.....++.+++.++.+|+. .++|+++=.-.+ ....+.+.++|+|++.+--- .|
T Consensus 71 AL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 71 ALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDP 150 (265)
T ss_pred HHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcE
Confidence 456667778889999999966 689988743222 24578899999999988411 00
Q ss_pred -------CC-------------------C---CCcc-c----hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 97 -------RQ-------------------L---DYVP-A----SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 97 -------~~-------------------~---~~~~-~----~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
+. . .+.. + ..+.+..+++.. ++||+.-=||++++++.++... |
T Consensus 151 I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-A 227 (265)
T COG0159 151 IFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-A 227 (265)
T ss_pred EEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-C
Confidence 00 0 0111 1 122345555544 8999987799999999999999 9
Q ss_pred CEEEEcHHHHHHhhh
Q psy16780 143 KMVFVGRPALWGLAH 157 (202)
Q Consensus 143 d~V~ig~~~l~~~~~ 157 (202)
|+|.+||++...+..
T Consensus 228 DGVIVGSAiV~~i~~ 242 (265)
T COG0159 228 DGVIVGSAIVKIIEE 242 (265)
T ss_pred CeEEEcHHHHHHHHh
Confidence 999999999986543
No 163
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=2.7e-05 Score=63.05 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=68.0
Q ss_pred HHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH
Q psy16780 57 TWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK 136 (202)
Q Consensus 57 ~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k 136 (202)
...++..+++.+++ +.|++++..+.+.|+|+|-+.-+ . .....+.+..++..+ +++|+++.||| +.+++..
T Consensus 98 ~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt---~---~~~G~~~l~~~~~~~-~~ipvvaiGGI-~~~n~~~ 168 (187)
T PRK07455 98 IEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV---Q---AVGGADYIKSLQGPL-GHIPLIPTGGV-TLENAQA 168 (187)
T ss_pred HHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC---C---cccCHHHHHHHHhhC-CCCcEEEeCCC-CHHHHHH
Confidence 33455567788776 89999999999999999998321 0 112356677776655 36999999999 7799999
Q ss_pred HHHhCCCEEEEcHHHH
Q psy16780 137 ALALGAKMVFVGRPAL 152 (202)
Q Consensus 137 al~~GAd~V~ig~~~l 152 (202)
.+++||++|.++|.++
T Consensus 169 ~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 169 FIQAGAIAVGLSGQLF 184 (187)
T ss_pred HHHCCCeEEEEehhcc
Confidence 9999999999999875
No 164
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.14 E-value=3.6e-05 Score=62.19 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCEEEE--eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 53 WSDVTWLKTITKLPIVLK--GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK--~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
.+.++.+++ .++++++= ...+++++..+...|+|.+.+.-....+..+.....+.++++++. .++|++++|||+
T Consensus 93 ~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~- 168 (202)
T cd04726 93 KKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT- 168 (202)
T ss_pred HHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcC-
Confidence 446666664 47777753 346788887788999999888421000111123345566666544 379999999996
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+++.+++..|||+|.+||++..
T Consensus 169 ~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHHhcCCCEEEEeehhcC
Confidence 99999999999999999999863
No 165
>PLN02411 12-oxophytodienoate reductase
Probab=98.14 E-value=2.7e-05 Score=69.82 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=68.7
Q ss_pred cccHHHHHHHHHhcC-CCEEEEeccC---------------HHHHHHHHHc------CCcEEEeeccCcCC---CC---C
Q psy16780 50 TINWSDVTWLKTITK-LPIVLKGILT---------------AEDAKIGVEM------GASAIMVSNHGGRQ---LD---Y 101 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~-~Pv~vK~~~~---------------~~~a~~l~~a------G~d~I~v~~~gg~~---~~---~ 101 (202)
.|..++|++||+.++ -+|.+|++.. .+.++.+.+. |+|+|.|+...... .. .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 346789999999984 2588887621 1234444442 59999998632110 00 0
Q ss_pred ccc-h-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 102 VPA-S-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 102 ~~~-~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
... . ......+++.+ ++|||++|++ +.+++.++++.| ||+|.+||+|+.
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 111 1 12345677777 7899999999 579999999998 999999999996
No 166
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.10 E-value=5.1e-05 Score=68.77 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCEEEEe-c-cC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 54 SDVTWLKTITKLPIVLKG-I-LT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~-~-~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
+.++.+++ .+.++++.. . .+ .+.++.+.+.|+|+|.++. +.+.....+...+.++++++.+ ++||++.||| +
T Consensus 98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~ 172 (430)
T PRK07028 98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence 45666665 578888753 2 23 5667888999999997753 1111111223455677776655 6999999999 6
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.+.+++++||+.+.+||.++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcC
Confidence 89999999999999999999874
No 167
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.10 E-value=5.8e-05 Score=63.85 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc---C---------------cCC--------C---C--
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH---G---------------GRQ--------L---D-- 100 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~---g---------------g~~--------~---~-- 100 (202)
..+.|++|.+.+++||.+.+-...++++.+.++||+.|.+++. . |.+ . +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 7789999999999999998765569999999999999999751 0 100 0 0
Q ss_pred ------Cc-----------------------------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH
Q psy16780 101 ------YV-----------------------------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139 (202)
Q Consensus 101 ------~~-----------------------------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~ 139 (202)
++ .++++.+.++++.. ++|||+|||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 00 12233333333333 799999999999999998855
Q ss_pred h--CCCEEEEcHHHHH
Q psy16780 140 L--GAKMVFVGRPALW 153 (202)
Q Consensus 140 ~--GAd~V~ig~~~l~ 153 (202)
+ |...+.+|++++.
T Consensus 222 ~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKGKVDLTIGSALDI 237 (253)
T ss_pred hcCCCCcEEeeehHHH
Confidence 4 5555788887663
No 168
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.09 E-value=0.00013 Score=62.07 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=76.8
Q ss_pred HhhhccCccccHHHHHHHH-HhcCCCEEEEecc------C-HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780 42 YITSQLDETINWSDVTWLK-TITKLPIVLKGIL------T-AEDAKIGVEMGASAIMVSNH--------------GG--- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~-~~~~~Pv~vK~~~------~-~~~a~~l~~aG~d~I~v~~~--------------gg--- 96 (202)
.+....+.+..++.++++| +..++|+++=.=. . ...++.+.++|+|++++-.- .|
T Consensus 64 AL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~ 143 (259)
T PF00290_consen 64 ALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDL 143 (259)
T ss_dssp HHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EE
T ss_pred HHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeE
Confidence 4566778888899999999 7779998863211 1 24678889999999988421 00
Q ss_pred -------CC----------------------CCCcc----ch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 97 -------RQ----------------------LDYVP----AS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 97 -------~~----------------------~~~~~----~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
+. ..+.. .. .+.+..+++.. +.||+.-=||++++++.+.. .||
T Consensus 144 I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~a 220 (259)
T PF00290_consen 144 IPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGA 220 (259)
T ss_dssp EEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTS
T ss_pred EEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccC
Confidence 00 01111 11 22355565544 89999977999999998887 999
Q ss_pred CEEEEcHHHHHHhhhcC
Q psy16780 143 KMVFVGRPALWGLAHSG 159 (202)
Q Consensus 143 d~V~ig~~~l~~~~~~G 159 (202)
|+|.+||+++..+...+
T Consensus 221 DGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 221 DGVIVGSAFVKIIEENG 237 (259)
T ss_dssp SEEEESHHHHHHHHHTC
T ss_pred CEEEECHHHHHHHHHcc
Confidence 99999999998765433
No 169
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=98.08 E-value=8.6e-05 Score=59.82 Aligned_cols=79 Identities=24% Similarity=0.160 Sum_probs=59.2
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCC-C--ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLD-Y--VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
.+.+++..+.+.|+|++.++.-.-+..+ . .+..++.+.++++.. .++||++.||| +.+++.+++.+|+++|.+++
T Consensus 104 h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~ 181 (196)
T TIGR00693 104 HNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-IDIPIVAIGGI-TLENAAEVLAAGADGVAVVS 181 (196)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhH
Confidence 5778888899999999998653222111 1 122466677776554 25999999999 58999999999999999999
Q ss_pred HHHH
Q psy16780 150 PALW 153 (202)
Q Consensus 150 ~~l~ 153 (202)
.++.
T Consensus 182 ~i~~ 185 (196)
T TIGR00693 182 AIMQ 185 (196)
T ss_pred HhhC
Confidence 9874
No 170
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.07 E-value=7.3e-05 Score=64.47 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=67.7
Q ss_pred cHHHHHHHHHhcCCCEEEE-eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 52 NWSDVTWLKTITKLPIVLK-GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
..+.++.+|+..+....+- .+.+.+++..+.++|+|+|-+++.+ .+.+.++.+.+ .+++|+.++||
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~----------~e~l~~av~~~~~~~~~i~leAsGG 251 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP----------VDLMQQAVQLIRQQNPRVKIEASGN 251 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4557888888765322222 4578999999999999999997632 23334433322 45799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
| +.+.+.+..++|+|.+.+|++..
T Consensus 252 I-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 252 I-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred C-CHHHHHHHHHcCCCEEEEchhhh
Confidence 9 69999999999999999999765
No 171
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.07 E-value=0.00011 Score=64.86 Aligned_cols=83 Identities=24% Similarity=0.245 Sum_probs=63.1
Q ss_pred EEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCE
Q psy16780 68 VLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM 144 (202)
Q Consensus 68 ~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~ 144 (202)
+++.+ .+.++++.+.+.|+|+|.++.-..|.- ...+..++.+..+++.. ++|+++-|||. .+++.+.+.+||++
T Consensus 242 iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ni~~l~~~Ga~g 318 (347)
T PRK02615 242 IIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSNIPEVLQAGAKR 318 (347)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCcE
Confidence 44443 578999999999999999865322211 11234566777776655 79999999995 89999999999999
Q ss_pred EEEcHHHHH
Q psy16780 145 VFVGRPALW 153 (202)
Q Consensus 145 V~ig~~~l~ 153 (202)
|.+++.++.
T Consensus 319 VAvisaI~~ 327 (347)
T PRK02615 319 VAVVRAIMG 327 (347)
T ss_pred EEEeHHHhC
Confidence 999999974
No 172
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.06 E-value=0.00019 Score=59.54 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=79.8
Q ss_pred ccCccc--cHHHHHHHHHh-cCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------c
Q psy16780 46 QLDETI--NWSDVTWLKTI-TKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------G 96 (202)
Q Consensus 46 ~~d~~~--~~~~i~~i~~~-~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g 96 (202)
.+=|++ ..+.++++|+. ++.|+=+=+ +.+| ..++.+.++|+|.|+++-- | .
T Consensus 37 ~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~ 116 (220)
T PRK08883 37 HYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPA 116 (220)
T ss_pred cccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCC
Confidence 334554 45799999987 688866554 3445 4578888999999998621 0 0
Q ss_pred CC----------C-----------CCc----cchHHHHHHHHHHhCC---CcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 97 RQ----------L-----------DYV----PASIEALPEIAKAVGH---KVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 97 ~~----------~-----------~~~----~~~~~~l~~i~~~~~~---~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|. . .++ +...+.++++++.... ++||.++|||. .+.+.++.++|||.+.+|
T Consensus 117 Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 117 TPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEe
Confidence 11 0 122 2244456666554421 48999999998 889999999999999999
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780 149 RPALWGLAHSGKSGVRKVLDILINEF 174 (202)
Q Consensus 149 ~~~l~~~~~~G~~~v~~~i~~l~~~L 174 (202)
|++.. .+...+.++.+++.+
T Consensus 196 SaIf~------~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 196 SAIFG------QPDYKAVIDEMRAEL 215 (220)
T ss_pred HHHhC------CCCHHHHHHHHHHHH
Confidence 99763 122334455555443
No 173
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.05 E-value=8.9e-05 Score=63.13 Aligned_cols=91 Identities=22% Similarity=0.324 Sum_probs=64.7
Q ss_pred cHHHHHHHHHh---cCCCEEEEe------c---cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780 52 NWSDVTWLKTI---TKLPIVLKG------I---LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA 115 (202)
Q Consensus 52 ~~~~i~~i~~~---~~~Pv~vK~------~---~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 115 (202)
..+.++++++. +++|+++=. . .+.+. ++.+.+.|+|+|..+-. ...+.+.++.+.
T Consensus 124 ~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~ 194 (267)
T PRK07226 124 MLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEG 194 (267)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHh
Confidence 44566666654 489987731 1 23333 57788999999987521 134566666554
Q ss_pred hCCCcEEEEecCCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q psy16780 116 VGHKVDVYLDGGVR--YGTDVFKAL----ALGAKMVFVGRPALW 153 (202)
Q Consensus 116 ~~~~ipiia~GGI~--~~~D~~kal----~~GAd~V~ig~~~l~ 153 (202)
. ++||+++|||+ +.+++.+.+ .+||+++.+||.++.
T Consensus 195 ~--~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 195 C--PVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred C--CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 4 79999999999 778777765 899999999999875
No 174
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.04 E-value=0.0001 Score=61.22 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=65.1
Q ss_pred cHHHHHHHHH---hcCCCEEEEecc---------CHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH
Q psy16780 52 NWSDVTWLKT---ITKLPIVLKGIL---------TAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA 115 (202)
Q Consensus 52 ~~~~i~~i~~---~~~~Pv~vK~~~---------~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 115 (202)
..+.++++++ ..++|+++=... +.+. ++.+.++|+|+|-+... .+.+.++++++.
T Consensus 107 ~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~---------~~~~~~~~i~~~ 177 (235)
T cd00958 107 MLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT---------GDAESFKEVVEG 177 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC---------CCHHHHHHHHhc
Confidence 3445666654 358999883211 2333 45588999999998532 145667777766
Q ss_pred hCCCcEEEEecCC--CCHHH----HHHHHHhCCCEEEEcHHHHH
Q psy16780 116 VGHKVDVYLDGGV--RYGTD----VFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 116 ~~~~ipiia~GGI--~~~~D----~~kal~~GAd~V~ig~~~l~ 153 (202)
. .+||+++||+ .|.+| +.+++.+||++|.+||.++.
T Consensus 178 ~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 178 C--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred C--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 5 7999999997 67766 77778899999999999985
No 175
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.04 E-value=7e-05 Score=62.15 Aligned_cols=76 Identities=25% Similarity=0.279 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+..-.+ .......+.+.+.++++.+ ++||++.|||++.+|+.+++..||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 4667888899999888765322 1112345777788887776 79999999999999999999999999999998874
No 176
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.04 E-value=8.2e-05 Score=61.25 Aligned_cols=103 Identities=26% Similarity=0.285 Sum_probs=74.7
Q ss_pred cCccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc-----CcCCC----------------------
Q psy16780 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH-----GGRQL---------------------- 99 (202)
Q Consensus 47 ~d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-----gg~~~---------------------- 99 (202)
-|-.-.-+.++.+++.+++||.|- ...++..-.+.++|+|.|.++|. -|+.+
T Consensus 44 vDIAadp~LV~~~~~~s~lPICVS-aVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~Ls 122 (242)
T PF04481_consen 44 VDIAADPELVKLAKSLSNLPICVS-AVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLS 122 (242)
T ss_pred EEecCCHHHHHHHHHhCCCCeEee-cCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceE
Confidence 344445678999999999999984 35678888889999999999874 22210
Q ss_pred -----------------------------CCc-----------------cchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 100 -----------------------------DYV-----------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 100 -----------------------------~~~-----------------~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
+++ .|++.+..++.+.+ ++||++..|+.+- .
T Consensus 123 VTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~v-T 199 (242)
T PF04481_consen 123 VTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAV-T 199 (242)
T ss_pred EecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchh-h
Confidence 111 23444455565666 8999999998764 4
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q psy16780 134 VFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 134 ~~kal~~GAd~V~ig~~~l~ 153 (202)
+=-++++||++|++|++.=+
T Consensus 200 ~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 200 APMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred HHHHHHcCCcccchhHHhhh
Confidence 55688999999999998753
No 177
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.02 E-value=5.9e-05 Score=62.63 Aligned_cols=77 Identities=23% Similarity=0.196 Sum_probs=61.9
Q ss_pred cCHHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~ 151 (202)
-++-.+++++++|+..|-=-+. -|+. -|..+...|..+.+.. ++|||.+-||.++.|+..++++|+|+|.+-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGSg--~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGSG--LGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccCC--cCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 4677899999999988763322 1221 2455777788887777 899999999999999999999999999999988
Q ss_pred HH
Q psy16780 152 LW 153 (202)
Q Consensus 152 l~ 153 (202)
..
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 75
No 178
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.02 E-value=0.00016 Score=59.96 Aligned_cols=97 Identities=25% Similarity=0.277 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--CcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVR 129 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~ 129 (202)
.++..++ .++.+++ .+.+.+.++.+.+.|.|.|-+-.. .|+.......+.+.+.++.+.+ ..++||++-|||+
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 3444443 3665554 456778888888889998876432 1221110011222233322222 2369999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+++++..++..|||+|.+|++++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhC
Confidence 999999999999999999999985
No 179
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.02 E-value=0.00012 Score=62.50 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=66.2
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
..++++|+..+ .++.+ .+.+.++++.+.++|+|+|-+++- ..+.++++.+.++.++|+.++||| +.
T Consensus 166 ~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~ 233 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TL 233 (265)
T ss_pred HHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CH
Confidence 36788888764 33332 557899999999999999988652 235566665555446999999999 68
Q ss_pred HHHHHHHHhCCCEEEEcHHH
Q psy16780 132 TDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~ 151 (202)
+.+.+..+.|+|.+.+|...
T Consensus 234 ~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 234 DNLEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHHHcCCCEEEeCHHH
Confidence 99999999999999996543
No 180
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.02 E-value=5.3e-05 Score=65.99 Aligned_cols=95 Identities=19% Similarity=0.151 Sum_probs=66.7
Q ss_pred HHHHHHHhc--CCCEEEEeccCHHHHHHHHHcCCcEEEe-eccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 55 DVTWLKTIT--KLPIVLKGILTAEDAKIGVEMGASAIMV-SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 55 ~i~~i~~~~--~~Pv~vK~~~~~~~a~~l~~aG~d~I~v-~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
.+++.++.+ +.-+++=...++..++++.++|+-+|-- ..--|+. .+..+.+.+..+.+.. ++||+.++||.++
T Consensus 186 ~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg--~gv~~p~~i~~~~e~~--~vpVivdAGIg~~ 261 (326)
T PRK11840 186 TLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSG--LGIQNPYTIRLIVEGA--TVPVLVDAGVGTA 261 (326)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCCCCH
Confidence 444444432 3334332347899999999999955543 1111211 1234677788777764 7999999999999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q psy16780 132 TDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+|+.+++++|||+|.+.|++..
T Consensus 262 sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 262 SDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHHHHcCCCEEEEcceecc
Confidence 9999999999999999998864
No 181
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.01 E-value=0.0001 Score=63.26 Aligned_cols=86 Identities=14% Similarity=0.280 Sum_probs=65.4
Q ss_pred HHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 55 DVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 55 ~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
-++.+|+..+ .+|.+ .+-+.++++.+.++|+|+|-+++. +.+.+.++.+..++++|+.++||| +.+.
T Consensus 179 av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence 4666666542 33333 457899999999999999988542 345556655555568999999999 6899
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q psy16780 134 VFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 134 ~~kal~~GAd~V~ig~~~l 152 (202)
+.+..++|+|.+.+|+...
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998654
No 182
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.00 E-value=0.00017 Score=58.49 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHhcCCCEE--EEeccCHHHHHHHHHcCCcEEEeeccC--------------cCC------C--------
Q psy16780 50 TINWSDVTWLKTITKLPIV--LKGILTAEDAKIGVEMGASAIMVSNHG--------------GRQ------L-------- 99 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~~Pv~--vK~~~~~~~a~~l~~aG~d~I~v~~~g--------------g~~------~-------- 99 (202)
.+..+.++++++..+.|+. ++.....+.++.+.++|+|+|+++... |.. .
T Consensus 42 ~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~ 121 (210)
T TIGR01163 42 TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLE 121 (210)
T ss_pred ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 3567788888876667752 443344566777788888888775321 000 0
Q ss_pred ------C-----------Cc----cchHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 100 ------D-----------YV----PASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 100 ------~-----------~~----~~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+ ++ +...+.+.++++.++ ..+|+++.|||+ .+++.+++..|||.+.+||+++.
T Consensus 122 ~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 122 YVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 0 01 111223344444332 237999999996 69999999999999999999973
No 183
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.00 E-value=8.9e-05 Score=61.77 Aligned_cols=76 Identities=33% Similarity=0.422 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+-...+ ...........+.++++.. .+|++..|||++.+|+..++.+||+.|.+|+..+.
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~-~~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG-AFEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh-hhcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4778899999999998754321 1112244667788887766 79999999999999999999999999999997763
No 184
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.99 E-value=0.0002 Score=59.56 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcC-CcEEEeec-cCcCCC-CCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780 53 WSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMG-ASAIMVSN-HGGRQL-DYVPASIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG-~d~I~v~~-~gg~~~-~~~~~~~~~l~~i~~~~~~~ipiia~ 125 (202)
.+.++++++. +. .+.... + .+.++...+.| +|+|.+.. +.|+.. ...+...+.+.++++.. .++||.+.
T Consensus 105 ~~~~~~i~~~-g~--~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~ 180 (229)
T PLN02334 105 HRLIQQIKSA-GM--KAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVD 180 (229)
T ss_pred HHHHHHHHHC-CC--eEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEe
Confidence 4566666643 33 333332 3 45566666664 99997643 222221 12233455566666543 35899999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHH
Q psy16780 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL 178 (202)
Q Consensus 126 GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m 178 (202)
||| +.+++.+...+|||.+.+||+++. .+...+.++.+++.++..|
T Consensus 181 GGI-~~e~i~~l~~aGad~vvvgsai~~------~~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 181 GGV-GPSTIDKAAEAGANVIVAGSAVFG------APDYAEVISGLRASVEKAA 226 (229)
T ss_pred CCC-CHHHHHHHHHcCCCEEEEChHHhC------CCCHHHHHHHHHHHHHHhh
Confidence 999 789999999999999999999763 2234455666666666553
No 185
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.96 E-value=0.0001 Score=58.60 Aligned_cols=97 Identities=27% Similarity=0.295 Sum_probs=72.1
Q ss_pred CccccHHHHHHHHHhc--CCCEEEEec---c-CHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780 48 DETINWSDVTWLKTIT--KLPIVLKGI---L-TAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~--~~Pv~vK~~---~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
+++...+.++++++.+ ++|++++.. . +++.. +.+.+.|+++|..+.... .+..++..+.++++.++
T Consensus 95 ~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~ 170 (201)
T cd00945 95 DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVG 170 (201)
T ss_pred CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcc
Confidence 3566778888888884 899999976 2 44443 345689999999865211 12235566677766664
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.++|+++.||+.+.+++..++.+||+++.+|
T Consensus 171 ~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 171 GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 4689999999999999999999999999875
No 186
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.94 E-value=0.00016 Score=61.99 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.++.+|+..+-..++.. +.+.++++.+.+.|+|+|-+.+ ...+.+.++++.++.++|+.++||| +
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t 242 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-T 242 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-C
Confidence 44577888887653334443 4789999999999999998843 2345667766666556889999999 8
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.+.+..+.|+|.+.+|++..
T Consensus 243 ~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 243 LENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHHcCCCEEEEChhhc
Confidence 8999999999999999998654
No 187
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.94 E-value=0.00024 Score=60.95 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=66.2
Q ss_pred cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.|++|++.+++||+.|.... ..+++.+.++|+|.|+-+..- .|.-+.+..+++.+ ++|+++ |++|
T Consensus 62 ~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~fma--d~~~ 130 (293)
T PRK04180 62 DPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPFVC--GARN 130 (293)
T ss_pred CHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCEEc--cCCC
Confidence 45689999999999999998754 789999999999999632211 12224455555555 677777 8999
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy16780 131 GTDVFKALALGAKMVFV 147 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~i 147 (202)
.+++..++.+|||+|.-
T Consensus 131 l~EAlrai~~GadmI~T 147 (293)
T PRK04180 131 LGEALRRIAEGAAMIRT 147 (293)
T ss_pred HHHHHHHHHCCCCeeec
Confidence 99999999999998864
No 188
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.94 E-value=0.00021 Score=61.24 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCC
Q psy16780 53 WSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGV 128 (202)
Q Consensus 53 ~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI 128 (202)
.+.++.+|+..+ .++.+ .+.+.+++..+.++|+|+|-+++-. + ..+.++.+.+ ..++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgV-ev~t~eea~~A~~~gaD~I~ld~~~-------p---~~l~~~~~~~~~~~~~i~i~AsGGI 239 (272)
T cd01573 171 LKALARLRATAPEKKIVV-EVDSLEEALAAAEAGADILQLDKFS-------P---EELAELVPKLRSLAPPVLLAAAGGI 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEE-EcCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHhccCCCceEEEECCC
Confidence 457777777653 22222 4578999999999999999986531 1 1222332222 236999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHH
Q psy16780 129 RYGTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~~~ 151 (202)
+.+.+.+....|+|++.+++.+
T Consensus 240 -~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 -NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred -CHHHHHHHHHcCCcEEEEChhh
Confidence 8899999999999999777653
No 189
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.94 E-value=0.00014 Score=62.11 Aligned_cols=87 Identities=25% Similarity=0.266 Sum_probs=67.7
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH
Q psy16780 54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~ 131 (202)
..++.+|+..+ .++.+ .+.+.++++.+.++|+|+|-+++- ..+.+.++.+.++.++|+.++||| +.
T Consensus 170 ~~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~ 237 (268)
T cd01572 170 EAVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TL 237 (268)
T ss_pred HHHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CH
Confidence 46778888764 23322 457899999999999999999653 245666666655446999999999 68
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q psy16780 132 TDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l 152 (202)
+.+.+..+.|+|++.+++...
T Consensus 238 ~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 238 ENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHHcCCCEEEEEeeec
Confidence 999999999999999998654
No 190
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.92 E-value=0.00011 Score=61.09 Aligned_cols=98 Identities=29% Similarity=0.360 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEeec---------c------------CcCCC------------
Q psy16780 54 SDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVSN---------H------------GGRQL------------ 99 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~~---------~------------gg~~~------------ 99 (202)
+.|++|.+.+.+||..|.+. ..-+|+.+...|+|+|+=|- | |.+++
T Consensus 67 ~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAa 146 (296)
T COG0214 67 KMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAA 146 (296)
T ss_pred HHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHH
Confidence 37888888999999999874 56788999999999998541 0 11110
Q ss_pred ----CC--c------------------------------------cchHHHHHHHHHHhCCCcEE--EEecCCCCHHHHH
Q psy16780 100 ----DY--V------------------------------------PASIEALPEIAKAVGHKVDV--YLDGGVRYGTDVF 135 (202)
Q Consensus 100 ----~~--~------------------------------------~~~~~~l~~i~~~~~~~ipi--ia~GGI~~~~D~~ 135 (202)
.+ + ..+.+.+.++++. +++|| ++.|||.|+.|+.
T Consensus 147 MIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAA 224 (296)
T COG0214 147 MIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAA 224 (296)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHH
Confidence 00 0 0112222333221 36666 5699999999999
Q ss_pred HHHHhCCCEEEEcHHHHH
Q psy16780 136 KALALGAKMVFVGRPALW 153 (202)
Q Consensus 136 kal~~GAd~V~ig~~~l~ 153 (202)
-.+.+|||+|.+||.+++
T Consensus 225 LMM~LGadGVFVGSGIFK 242 (296)
T COG0214 225 LMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHhCCCeEEecccccC
Confidence 999999999999998765
No 191
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.91 E-value=0.00013 Score=58.31 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=59.2
Q ss_pred EEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 67 IVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 67 v~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
.++..+ -+.++++.+.+.|+|++.++.-..|.- +..+..++.+.++++.. ++||++-||| +.+++.++..+||+
T Consensus 96 ~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 96 KIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGAD 172 (180)
T ss_dssp SEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-S
T ss_pred eEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCC
Confidence 344444 678889999999999999975322211 11234567788887777 7999999999 78999999999999
Q ss_pred EEEEcHHH
Q psy16780 144 MVFVGRPA 151 (202)
Q Consensus 144 ~V~ig~~~ 151 (202)
+|.+-|++
T Consensus 173 gvAvi~aI 180 (180)
T PF02581_consen 173 GVAVISAI 180 (180)
T ss_dssp EEEESHHH
T ss_pred EEEEEeeC
Confidence 99998763
No 192
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.91 E-value=0.00021 Score=59.16 Aligned_cols=76 Identities=33% Similarity=0.398 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+..-.+. ..+...+.+.+.++++.+ .+|+...|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 46688889999999988653322 122344677788887766 79999999999999999999999999999987764
No 193
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.90 E-value=0.00048 Score=58.92 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=65.5
Q ss_pred cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.|++|++.+++||+-+.... ..+++.+.++|+|.|.-+... .|..+.+..++..+ ++|+++ +++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 57799999999999999776543 788999999999999532211 12334556666555 677776 8999
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy16780 131 GTDVFKALALGAKMVFV 147 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~i 147 (202)
.+++..+..+|||+|.-
T Consensus 122 leEal~a~~~Gad~I~T 138 (283)
T cd04727 122 LGEALRRISEGAAMIRT 138 (283)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 99999999999998853
No 194
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.89 E-value=0.00024 Score=60.95 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh-----CCCcEEEEec
Q psy16780 53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV-----GHKVDVYLDG 126 (202)
Q Consensus 53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipiia~G 126 (202)
.+.++.+|+.. ..+|.| ++.+.+++..+.++|+|.|.++|. +.+.+.++.+.+ ++++.+.+||
T Consensus 170 ~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSG 238 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSG 238 (278)
T ss_pred HHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEEC
Confidence 45677777754 355555 678999999999999999999774 233333433322 2478999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
|| +.+.+.+...+|+|.+.+|++..
T Consensus 239 GI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 239 GI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 99 89999999999999999998764
No 195
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.89 E-value=7.2e-05 Score=62.39 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.++.+.+. ++.+.+....|+ ..+.+++.+.+.++.+.. .+||+++|||+|.+|+.+++.+||+.|.+|++.+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 556777776 888877443222 123346788888887765 7999999999999999999999999999999755
No 196
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.87 E-value=0.00023 Score=60.35 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.++.+.+.|++.+.+..-.+. .....++.+.+.++.+.. .+||++.|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 46689999999999988653211 112346778888887765 79999999999999999999999999999998763
No 197
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.87 E-value=0.00026 Score=59.88 Aligned_cols=89 Identities=24% Similarity=0.403 Sum_probs=62.4
Q ss_pred HHHHHHHHh---cCCCEEEEec--------cCHH---H-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 54 SDVTWLKTI---TKLPIVLKGI--------LTAE---D-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 54 ~~i~~i~~~---~~~Pv~vK~~--------~~~~---~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
+.++++++. +++|+++... .+.+ . ++.+.++|+|+|.++.. ...+.+.++.+..
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~-- 191 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC-- 191 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--
Confidence 456666654 5899888432 1222 2 46678899999987521 2456677776654
Q ss_pred CcEEEEecCCC--CHHHHH----HHHHhCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVR--YGTDVF----KALALGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~--~~~D~~----kal~~GAd~V~ig~~~l~ 153 (202)
++||++.|||+ +.+++. +++.+||+++.+||.++.
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 79999999999 655554 445899999999999885
No 198
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.85 E-value=0.00016 Score=58.56 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcCCCEE--EEec---------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 52 NWSDVTWLKTITKLPIV--LKGI---------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~--vK~~---------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
..+.|+.||+.+++||| +|-. .+.++++.+.++|+|.|-++.+..... .+-.+.+.++++.. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~---~ 93 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY---Q 93 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT---S
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC---c
Confidence 56899999999999997 4421 467999999999999999987543211 22233456665532 4
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
++++ .+.|.+|+..+..+|+|+|.-.
T Consensus 94 l~MA--Dist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 94 LVMA--DISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred EEee--ecCCHHHHHHHHHcCCCEEEcc
Confidence 5555 6899999999999999998643
No 199
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.84 E-value=9.4e-05 Score=62.71 Aligned_cols=97 Identities=27% Similarity=0.306 Sum_probs=68.4
Q ss_pred hccCccccHHHHHHHHHhcCCCEEEEec-----cCHHH-----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH
Q psy16780 45 SQLDETINWSDVTWLKTITKLPIVLKGI-----LTAED-----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~~~-----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~ 114 (202)
..+|-+...+.|+++++.++-++.+|.+ ++.++ .+.+.++|+|+|.-|.+.+ .+..+.+.++-+++
T Consensus 110 k~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~ 185 (257)
T PRK05283 110 MAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLE 185 (257)
T ss_pred hCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHH
Confidence 3567777788899999876535778876 34332 3567899999999865321 12345555554444
Q ss_pred Hh-----CCCcEEEEecCCCCHHHHHHHHHhCCCEE
Q psy16780 115 AV-----GHKVDVYLDGGVRYGTDVFKALALGAKMV 145 (202)
Q Consensus 115 ~~-----~~~ipiia~GGI~~~~D~~kal~~GAd~V 145 (202)
.+ ++++.|=++|||||.+++.+++.+|.+..
T Consensus 186 ~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 186 VIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred HHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh
Confidence 44 35799999999999999999999986643
No 200
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.84 E-value=0.00023 Score=59.59 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=60.1
Q ss_pred CH-HHHHHHHH-cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780 74 TA-EDAKIGVE-MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 74 ~~-~~a~~l~~-aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~ 151 (202)
++ +.|+...+ .|+|.+.+.--.+. ..+.+.+.+.+.++++.+ .+||...|||||.+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 67788888 69999887543221 123356778888888766 799999999999999999999999999999976
Q ss_pred H
Q psy16780 152 L 152 (202)
Q Consensus 152 l 152 (202)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 5
No 201
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.84 E-value=0.00063 Score=56.19 Aligned_cols=95 Identities=21% Similarity=0.155 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 56 VTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 56 i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
+...++..+-..+++.+ .+.+++..+.+.|+|+|-++.-..|.-. ..+..++.+..+++.. .+|+++-||| +.+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi-~~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGI-NLE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34444444444556554 5789999999999999998653333321 2233566777776665 5999999997 678
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q psy16780 133 DVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 133 D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+...+..||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 899999999999999999985
No 202
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.82 E-value=0.00033 Score=58.24 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=72.7
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.+..++++..++ .++|++- +++|+.++..+.++|++.|.+.-.+ ..+ ...++.++.-+ +.++++.+||
T Consensus 97 sP~~~~~v~~~~~~-~~i~~iP-G~~TpsEi~~A~~~Ga~~vKlFPA~----~~G---~~~ikal~~p~-p~i~~~ptGG 166 (222)
T PRK07114 97 TPLFNPDIAKVCNR-RKVPYSP-GCGSLSEIGYAEELGCEIVKLFPGS----VYG---PGFVKAIKGPM-PWTKIMPTGG 166 (222)
T ss_pred CCCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEECccc----ccC---HHHHHHHhccC-CCCeEEeCCC
Confidence 44455557777664 5888875 6899999999999999999996421 112 34455554434 4799999999
Q ss_pred CCC-HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRY-GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~-~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|.- .+++.+.+.+|+.+|++|+.+..
T Consensus 167 V~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 167 VEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred CCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 985 58999999999999999998863
No 203
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.81 E-value=0.00014 Score=59.27 Aligned_cols=96 Identities=20% Similarity=0.118 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCCCEEEEecc-CHHH--HHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 53 WSDVTWLKTITKLPIVLKGIL-TAED--AKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~-~~~~--a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.+.++.+++..+.+++..... +... .......|+|++.+.+...... .+.+.+++.++++. .++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECC
Confidence 356788887777787733332 2222 2345568999998866322111 22345677776654 3799999999
Q ss_pred CCCHHHHHHHHHhC-CCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALG-AKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~G-Ad~V~ig~~~l~ 153 (202)
| +++.+.+++..| +++|.+.|.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 999999999999 999999998763
No 204
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.80 E-value=0.00042 Score=59.56 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
..+.++++|+..+ .||.| ++.+.+++..+.++|+|.|-+.|. +.+.+.++.+.++.+.|+-+||||
T Consensus 180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI- 247 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRI- 247 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCC-
Confidence 3457888888764 55665 678999999999999999999874 345556665666668899999998
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.+.+.+....|+|.+.+|+...
T Consensus 248 ~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 248 TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 56888888889999999998653
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.80 E-value=0.00042 Score=56.91 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.+..++++..+ ..++|++- ++.|+.++..+.++|+|.|.+.-.+ . -++ ...++.++.-+ +.+|++.+||
T Consensus 86 sP~~~~~v~~~~~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~--~-~GG---~~yikal~~pl-p~i~~~ptGG 156 (204)
T TIGR01182 86 SPGLTPELAKHAQ-DHGIPIIP-GVATPSEIMLALELGITALKLFPAE--V-SGG---VKMLKALAGPF-PQVRFCPTGG 156 (204)
T ss_pred CCCCCHHHHHHHH-HcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCch--h-cCC---HHHHHHHhccC-CCCcEEecCC
Confidence 3444556777766 45888886 7899999999999999999995421 0 111 23445554444 4799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|.- +++.+.+++|+.+|++|+.+..
T Consensus 157 V~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 157 INL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 866 8999999999999999998874
No 206
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.79 E-value=0.00031 Score=60.13 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=65.8
Q ss_pred cHHHHHHHHHhcCCCEEEEeccC-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILT-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.|++|++.+++||+-|.... ..+++.+.++|+|.|+-+... .|.-+.+..++..+ ++|+++ |++|
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfma--d~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFVC--GARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEEc--cCCC
Confidence 56699999999999999887644 789999999999999633211 22333455555555 677776 8999
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy16780 131 GTDVFKALALGAKMVFV 147 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~i 147 (202)
.+++..++..|||+|.-
T Consensus 124 l~EAlrai~~GadmI~T 140 (287)
T TIGR00343 124 LGEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHHCCCCEEec
Confidence 99999999999998753
No 207
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.78 E-value=9.7e-05 Score=61.58 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=65.0
Q ss_pred ccccHHHHHHHHHhc---CCCEEEEeccCHH-------------HHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780 49 ETINWSDVTWLKTIT---KLPIVLKGILTAE-------------DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~---~~Pv~vK~~~~~~-------------~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i 112 (202)
-+...+.++++++.+ ++|+++=..++.+ .++.+.++|+|+|..+..+. ......+.+.+.++
T Consensus 107 ~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~ 184 (236)
T PF01791_consen 107 EDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKA 184 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHH
Confidence 334556677777665 7788876333322 24677899999999976411 11112233344444
Q ss_pred HHHhCCCcE----EEEecCC------CCHHHHHHHHHhCC--CEEEEcHHHH
Q psy16780 113 AKAVGHKVD----VYLDGGV------RYGTDVFKALALGA--KMVFVGRPAL 152 (202)
Q Consensus 113 ~~~~~~~ip----iia~GGI------~~~~D~~kal~~GA--d~V~ig~~~l 152 (202)
.+.. .+| |.++||+ ++.+++.+++.+|| .++..||.+.
T Consensus 185 ~~~~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 185 VEAA--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp HHTH--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred HHhc--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 4433 455 9999999 99999999999999 7777887654
No 208
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.77 E-value=0.00058 Score=58.33 Aligned_cols=87 Identities=24% Similarity=0.273 Sum_probs=64.4
Q ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC--CcEEEEecCCC
Q psy16780 54 SDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH--KVDVYLDGGVR 129 (202)
Q Consensus 54 ~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipiia~GGI~ 129 (202)
..++++|+..+ .++.+ .+.+.+++..+.++|+|+|-+++. ..+.+.++.+.++. ++|+.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~~----------~~e~l~~~v~~i~~~~~i~i~asGGIt 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLKGLPRVLLEASGGIT 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhccCCCeEEEEECCCC
Confidence 46788888764 33333 457899999999999999999663 22344444443333 79999999984
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.+.+..++|||++.+|+.+.
T Consensus 238 -~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 -LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred -HHHHHHHHHcCCCEEEEcHHHc
Confidence 7889999999999999976543
No 209
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.75 E-value=0.00016 Score=61.17 Aligned_cols=69 Identities=23% Similarity=0.135 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|++.+++--- +.++.+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+.++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 58899999999999987543 233778888888876 799999999998 9999999999999999998764
No 210
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.74 E-value=0.00035 Score=58.50 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=51.6
Q ss_pred cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc-EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV-DVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.|...+.+..+++. +.+.+.+.+..+++.+ +. |++..|||++.+++.+++..|||.|.+|+.+..
T Consensus 153 ~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 153 LGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred cCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 46666666543322 3456778888888776 56 999999999999999999999999999999985
No 211
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.74 E-value=0.00024 Score=59.15 Aligned_cols=76 Identities=29% Similarity=0.336 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|++.+.+..-.+. ..+.+.+.+.+.++++.+ .+|+...||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 47788888999999887542111 123355777888888877 69999999999999999999999999999998775
No 212
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.73 E-value=0.00055 Score=59.05 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 53 WSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 53 ~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
.+.++++|+..+ .+|.| ++.+.++++.+.++|+|.|-+.|. +.+.+.++.+.++.++.+.+|||| +
T Consensus 184 ~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~ 251 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-D 251 (290)
T ss_pred HHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-C
Confidence 457888887764 45555 568999999999999999999874 345556665556668899999998 5
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.+.+...+|+|.+.+|++..
T Consensus 252 ~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 252 MTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 7888888889999999998654
No 213
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.69 E-value=0.00041 Score=56.97 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=63.4
Q ss_pred CccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780 48 DETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G 126 (202)
+.....+.|+++++.+ ++.|.++.+++.++++.+.++|+++++- -+ .+.+.+..+ +.. ++|.+-
T Consensus 42 ~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs-P~---------~~~~v~~~~-~~~--~i~~iP-- 106 (204)
T TIGR01182 42 RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS-PG---------LTPELAKHA-QDH--GIPIIP-- 106 (204)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHH-HHc--CCcEEC--
Confidence 3344577899999877 4667777789999999999999999943 21 122333333 333 677777
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q psy16780 127 GVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~i 147 (202)
|+.|+.++.+|+.+||+.|=+
T Consensus 107 G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 107 GVATPSEIMLALELGITALKL 127 (204)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999998754
No 214
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.67 E-value=0.0011 Score=61.15 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=65.0
Q ss_pred HHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780 58 WLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV 134 (202)
Q Consensus 58 ~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~ 134 (202)
..|+..+-..+++.+ .+.++++.+.+.|+|+|.++--..+.- +..+..++.++++++.. ++||++-|||. .+++
T Consensus 382 ~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~~ 458 (502)
T PLN02898 382 LARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASNA 458 (502)
T ss_pred HHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHHH
Confidence 334433333445544 577889999999999998754211111 11223466677776554 79999999995 8999
Q ss_pred HHHHHhCCC---EEEEcHHHHH
Q psy16780 135 FKALALGAK---MVFVGRPALW 153 (202)
Q Consensus 135 ~kal~~GAd---~V~ig~~~l~ 153 (202)
.+++++||+ +|.+++.+..
T Consensus 459 ~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 459 ASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHcCCCcCceEEEEeHHhc
Confidence 999999999 9999999874
No 215
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.67 E-value=0.00029 Score=58.80 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.|+...+.|+|.+.+..-.+. .+...+.+.+.++.+.+ .+|+...||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 47789999999999988653322 23456777888887766 6999999999999999999999999999999654
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.66 E-value=0.00078 Score=57.89 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhcC--CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 52 NWSDVTWLKTITK--LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 52 ~~~~i~~i~~~~~--~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
..+.++++|+..+ .+|.| ++.+.+++..+.++|+|.|-+.|. +.+.+.++.+.++++..+.+||||
T Consensus 179 i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI- 246 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV- 246 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-
Confidence 4457888887764 45655 678999999999999999999874 344555555556667889999997
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.+.+.+....|+|.+.+|+...
T Consensus 247 ~~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 247 NLNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred CHHHHHHHHhcCCCEEEeCcccc
Confidence 67888888889999999998543
No 217
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.66 E-value=0.0018 Score=53.38 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=60.6
Q ss_pred EEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCC---CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCC
Q psy16780 68 VLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLD---YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143 (202)
Q Consensus 68 ~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd 143 (202)
++..+ -+.+++..+.+.|+|++.++--..|.-. ..+..++.+.++.+.. .++||++-|||. .+++.++++.||+
T Consensus 104 ~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~ 181 (211)
T PRK03512 104 RLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVG 181 (211)
T ss_pred EEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCC
Confidence 44443 5778888899999999998753222111 1123455566655442 269999999986 7999999999999
Q ss_pred EEEEcHHHHH
Q psy16780 144 MVFVGRPALW 153 (202)
Q Consensus 144 ~V~ig~~~l~ 153 (202)
+|.+-+.+..
T Consensus 182 GiAvisai~~ 191 (211)
T PRK03512 182 SIAVVSAITQ 191 (211)
T ss_pred EEEEhhHhhC
Confidence 9999999874
No 218
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00045 Score=57.45 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|+|-+++-.-.. ..++..+..+.+.++++.+ -+|+..-|||++.+|+.+.|.+|||=|.+.|+-+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 5889999999999987632110 1122345677888888877 79999999999999999999999999999998764
No 219
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.64 E-value=0.0019 Score=53.26 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVR 129 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~ 129 (202)
.+.++.+++. ++++-+-.+.+.+++..+.++|+++|.. .-||--+.+......+.++.+.+ +-+..|++ .|++
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r 166 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIR 166 (211)
T ss_pred HHHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccC
Confidence 3455555544 7888888889999999999999999654 44443333444455555554433 21344444 5699
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALWGLAH 157 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~~~~~ 157 (202)
++.++..++.+|||.|-+.-.++..+..
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 9999999999999999999988876543
No 220
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.61 E-value=0.0016 Score=59.02 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=59.0
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCC---CCccchHHHHHHHHHHhC-------CCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQL---DYVPASIEALPEIAKAVG-------HKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~---~~~~~~~~~l~~i~~~~~-------~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
-+.+++.++.+.|+|+|.++----|.- ...+..++.+.++++.+. ..+|+++-||| +.+++.++++.||
T Consensus 308 Hs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa 386 (437)
T PRK12290 308 HGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGV 386 (437)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCC
Confidence 357788888899999998864221211 122335566666555442 26999999999 8899999999999
Q ss_pred CEEEEcHHHHH
Q psy16780 143 KMVFVGRPALW 153 (202)
Q Consensus 143 d~V~ig~~~l~ 153 (202)
++|.+-|++..
T Consensus 387 ~GVAVVSAI~~ 397 (437)
T PRK12290 387 SSLAVVRAITL 397 (437)
T ss_pred CEEEEehHhhc
Confidence 99999999874
No 221
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.61 E-value=0.0019 Score=53.78 Aligned_cols=123 Identities=13% Similarity=0.142 Sum_probs=79.6
Q ss_pred ccCccc--cHHHHHHHHHhc-CCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCC-C--------------------
Q psy16780 46 QLDETI--NWSDVTWLKTIT-KLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQ-L-------------------- 99 (202)
Q Consensus 46 ~~d~~~--~~~~i~~i~~~~-~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~-~-------------------- 99 (202)
.+-|++ ..+.++++|+.+ ++|+-+|+- .++ ..++.+.++|+|.++++.-.+.. +
T Consensus 44 ~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p 123 (228)
T PTZ00170 44 HFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKP 123 (228)
T ss_pred ccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECC
Confidence 444554 467999999987 899999975 555 44688899999999997432211 0
Q ss_pred ----------------C-----------Ccc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 100 ----------------D-----------YVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 100 ----------------~-----------~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+ .+. ...+-+.++++.. +...|..+|||+. +.+.++..+|||.+.+|
T Consensus 124 ~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvG 201 (228)
T PTZ00170 124 KTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAG 201 (228)
T ss_pred CCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEc
Confidence 0 001 1122233343333 2478999999976 67888889999999999
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHHH
Q psy16780 149 RPALWGLAHSGKSGVRKVLDILINEFDQ 176 (202)
Q Consensus 149 ~~~l~~~~~~G~~~v~~~i~~l~~~L~~ 176 (202)
|++..+ +...+.++.+++.++.
T Consensus 202 saI~~a------~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 202 SSIFKA------KDRKQAIELLRESVQK 223 (228)
T ss_pred hHHhCC------CCHHHHHHHHHHHHHH
Confidence 997531 2233455555555443
No 222
>KOG1606|consensus
Probab=97.60 E-value=0.00076 Score=55.51 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCEEEEecc-CHHHHHHHHHcCCcEEEee
Q psy16780 54 SDVTWLKTITKLPIVLKGIL-TAEDAKIGVEMGASAIMVS 92 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~~-~~~~a~~l~~aG~d~I~v~ 92 (202)
..|++|++.+.+||..|.+. ..-+++.+...|+|+|+=|
T Consensus 68 ~mIKei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiDES 107 (296)
T KOG1606|consen 68 RMIKEIKNAVSIPVMAKVRIGHFVEAQILEALGVDYIDES 107 (296)
T ss_pred HHHHHHHHhccchhhhhhhhhhhhHHHHHHHhccCccchh
Confidence 48999999999999999873 4567888899999998743
No 223
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.57 E-value=0.0012 Score=52.63 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=67.6
Q ss_pred HhhhccCccccHHHHHHHHHhcC-CC-EEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHH-HHHHHHHhCC
Q psy16780 42 YITSQLDETINWSDVTWLKTITK-LP-IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA-LPEIAKAVGH 118 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~-~P-v~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~-l~~i~~~~~~ 118 (202)
|+.-.|+ ..+.++++++..+ .+ |.| ++.+.++++.+.++|+|.|.+.+.. +.++.. +..+ +...+
T Consensus 59 Hi~~~g~---i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~~-------~~~~~~~v~~l-~~~~~ 126 (169)
T PF01729_consen 59 HIAFFGG---IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNMS-------PEDLKEAVEEL-RELNP 126 (169)
T ss_dssp HHHHHSS---HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-C-------HHHHHHHHHHH-HHHTT
T ss_pred HHHHhCC---HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCcC-------HHHHHHHHHHH-hhcCC
Confidence 4444455 3447777777763 33 555 6678999999999999999998742 222222 2222 34566
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
++.|.+|||| +.+.+.+....|+|.+.+|+...
T Consensus 127 ~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 127 RVKIEASGGI-TLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp TSEEEEESSS-STTTHHHHHHTT-SEEEECHHHH
T ss_pred cEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhc
Confidence 8999999997 56788888899999999998755
No 224
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.56 E-value=0.0012 Score=55.30 Aligned_cols=75 Identities=19% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|++.+.+..-.+. .+..++.+.+.++.+.. ..|+...|||||.+|+.+++.+||+-|.+||..+.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--~~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--EGVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--CCCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 46788888999999987653332 13345667777776633 25999999999999999999999999999997653
No 225
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.56 E-value=0.00053 Score=56.93 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=54.9
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|..+...|...|.+.+ .|. ..+.+.+..+++.+. ++|++..|||||.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe~-SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEY-SGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4566778888888862 222 245667777776542 69999999999999999999999999999999874
No 226
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.54 E-value=0.0014 Score=56.72 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.++++|+.. ..|+.| ++.+.+++..+.++|+|.|-+.|. +.+.+.++.+.+++++.+.+|||| +
T Consensus 195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI-~ 262 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNV-T 262 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCC-C
Confidence 345677777665 356555 678899999999999999999874 235555555555668999999997 5
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~ 151 (202)
.+.+.+...+|+|.+.+|++.
T Consensus 263 ~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 263 LETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHHhcCCCEEEeCccc
Confidence 688888888999999999854
No 227
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.53 E-value=0.0015 Score=56.41 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=66.1
Q ss_pred HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hCCCcEEEEecCC
Q psy16780 53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VGHKVDVYLDGGV 128 (202)
Q Consensus 53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipiia~GGI 128 (202)
.+.++++|+.. ..|+.| ++.+.+++..+.++|+|.|-++|.. .+.++++.+. ..+++.+.+||||
T Consensus 187 ~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~ieaSGGI 255 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLLESSGGL 255 (289)
T ss_pred HHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEEEEECCC
Confidence 34677777754 356655 6789999999999999999998742 2333333322 3567899999997
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 129 RYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.+.+.+...+|+|.+.+|+...
T Consensus 256 -~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 -TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -CHHHHHHHHhcCCCEEEeChhhc
Confidence 67888888889999999998664
No 228
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.53 E-value=0.00072 Score=55.61 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=52.5
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+..+...|++.|.+....|. ..+.+.+.+..+++.+ ++|++.-||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45567789999988653333 1234567788888877 799999999999999999999999999986
No 229
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.51 E-value=0.0058 Score=50.55 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
++++-+=.+.+.+++..+.++|+++|.. .-||-.+.+......+.++.+.+ +.+..|++. .+|+..++.++..+
T Consensus 101 Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaA-S~r~~~~v~~~~~~ 177 (213)
T TIGR00875 101 GIKTNVTLVFSAAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAA-SVRHPRHVLEAALI 177 (213)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEe-ccCCHHHHHHHHHc
Confidence 6777776678889999999999998876 33443333334455555554433 346776665 59999999999999
Q ss_pred CCCEEEEcHHHHHHhh
Q psy16780 141 GAKMVFVGRPALWGLA 156 (202)
Q Consensus 141 GAd~V~ig~~~l~~~~ 156 (202)
|||.|-+.-.++..+.
T Consensus 178 G~d~vTip~~vl~~l~ 193 (213)
T TIGR00875 178 GADIATMPLDVMQQLF 193 (213)
T ss_pred CCCEEEcCHHHHHHHH
Confidence 9999999999887764
No 230
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.50 E-value=0.0012 Score=56.14 Aligned_cols=71 Identities=23% Similarity=0.162 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+.|+...+.|++.++|---.| +.+.+.+.+.++++ + .+||-.-||||+ +++.+++.+||+-|.+||..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4778999999999988754322 22446777888877 5 699999999996 9999999999999999998774
No 231
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.49 E-value=0.0022 Score=55.12 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=70.8
Q ss_pred HhhhccCccccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C
Q psy16780 42 YITSQLDETINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G 117 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~ 117 (202)
|..-.++.+...+.++.+|+.. ..+|.| ++.+.++++.+.++|+|.|.++|. +.+.+.++.+.+ .
T Consensus 165 Hi~~~g~~~~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 165 HRTFLNDNFDWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFD 233 (277)
T ss_pred HHHHhCCcccHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccC
Confidence 3333444344556888888765 345555 567999999999999999999763 223333333333 4
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~ 151 (202)
+++.+.++||| +.+.+.+...+|+|.+.+|.+.
T Consensus 234 ~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 234 HIPTLAAAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 57889999997 6788988889999999999874
No 232
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.46 E-value=0.0013 Score=54.43 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHhcC----CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780 49 ETINWSDVTWLKTITK----LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~----~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia 124 (202)
.....+.|+++++.++ +.|.++.+++.++++.+.++|+++++- - + .+.+.+... +.. ++|++-
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P--~-------~~~~v~~~~-~~~--~i~~iP 114 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-P--S-------FNRETAKIC-NLY--QIPYLP 114 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-C--C-------CCHHHHHHH-HHc--CCCEEC
Confidence 3445678999998773 445566679999999999999999973 1 1 122333333 333 677776
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 125 DGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 125 ~GGI~~~~D~~kal~~GAd~V~i 147 (202)
|..|+.++.+++.+|||.|.+
T Consensus 115 --G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 115 --GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --CcCCHHHHHHHHHcCCCEEEE
Confidence 899999999999999999998
No 233
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.45 E-value=0.00079 Score=56.24 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=43.9
Q ss_pred cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.|...+-+-.+.|+. ++++ ..+.++++.+ .++|+|..|||||.+++.+++.+|||.|.+|+.|..
T Consensus 152 ~g~~~iYLEaGSGa~---~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAY---GPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp TT-SEEEEE--TTSS---S-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred hCCCEEEEEeCCCCC---CCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 567777765433321 1222 3344445554 489999999999999999999999999999999975
No 234
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.45 E-value=0.0006 Score=55.67 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=67.9
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.+..++++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+ . -+| ...++.++.-+ ++++++.+||
T Consensus 86 SP~~~~~v~~~~~~-~~i~~iP-G~~TptEi~~A~~~G~~~vK~FPA~--~-~GG---~~~ik~l~~p~-p~~~~~ptGG 156 (196)
T PF01081_consen 86 SPGFDPEVIEYARE-YGIPYIP-GVMTPTEIMQALEAGADIVKLFPAG--A-LGG---PSYIKALRGPF-PDLPFMPTGG 156 (196)
T ss_dssp ESS--HHHHHHHHH-HTSEEEE-EESSHHHHHHHHHTT-SEEEETTTT--T-TTH---HHHHHHHHTTT-TT-EEEEBSS
T ss_pred CCCCCHHHHHHHHH-cCCcccC-CcCCHHHHHHHHHCCCCEEEEecch--h-cCc---HHHHHHHhccC-CCCeEEEcCC
Confidence 45555667777764 4888875 6899999999999999999995421 1 111 34455554434 4799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|.- +++.+.+.+|+.+|++|+.+..
T Consensus 157 V~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 157 VNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp --T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred CCH-HHHHHHHhCCCEEEEECchhcC
Confidence 976 7899999999999999998774
No 235
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.44 E-value=0.0069 Score=52.15 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=73.3
Q ss_pred cCHHHHHHHH-HcCCcEEEee--ccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEE
Q psy16780 73 LTAEDAKIGV-EMGASAIMVS--NHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~--~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~i 147 (202)
.++++++.+. +.|+|++-++ +-.|+........++.|+++++.+ ++|+++-| || +.+++.+++..|++.|.+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGI-SPEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCC-CHHHHHHHHHcCCcEEEE
Confidence 3688888887 4699999994 322332222234778899998877 79999999 76 458899999999999999
Q ss_pred cHHHHHHhh-------hcCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 148 GRPALWGLA-------HSGK-----SGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 148 g~~~l~~~~-------~~G~-----~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.|.+..... ...+ +-.....+.+++..+..|..+|..
T Consensus 230 ~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 230 ATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998775311 0110 112333345566666666666643
No 236
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.43 E-value=0.0024 Score=55.20 Aligned_cols=87 Identities=14% Similarity=0.254 Sum_probs=65.6
Q ss_pred HHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 54 SDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 54 ~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
+.++++|+.. ..+|.| ++.+.++++.+.++|+|.|-+.|. +.+.+.++.+.+++++.+-+|||| +.+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHH
Confidence 3566666543 244444 568899999999999999999874 344555555555567899999998 578
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q psy16780 133 DVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 133 D~~kal~~GAd~V~ig~~~l 152 (202)
.+.+...+|+|.+.+|+...
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 88888889999999998543
No 237
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.43 E-value=0.0071 Score=50.34 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=77.5
Q ss_pred ccCccc--cHHHHHHHHHh-cCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------c
Q psy16780 46 QLDETI--NWSDVTWLKTI-TKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------G 96 (202)
Q Consensus 46 ~~d~~~--~~~~i~~i~~~-~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g 96 (202)
.+=|++ ..+.++++|+. ++.|+=+=+ +.++ ..+..+.++|+|.|+++-- | +
T Consensus 41 ~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~ 120 (223)
T PRK08745 41 HYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPA 120 (223)
T ss_pred ccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCC
Confidence 334554 46799999998 688876654 3445 4578889999999998621 0 0
Q ss_pred CCC---------------------CCc----cchHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 97 RQL---------------------DYV----PASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 97 ~~~---------------------~~~----~~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|.. .+| +...+-+.++++... .++.|-.+|||. .+.+.++.++|||.+.+|
T Consensus 121 T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 121 TPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAG 199 (223)
T ss_pred CCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 110 112 223344455444332 247799999997 678888899999999999
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780 149 RPALWGLAHSGKSGVRKVLDILINEF 174 (202)
Q Consensus 149 ~~~l~~~~~~G~~~v~~~i~~l~~~L 174 (202)
|++.. .+...+.++.+++.+
T Consensus 200 SaiF~------~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 200 SAIFN------APDYAQVIAQMRAAV 219 (223)
T ss_pred hhhhC------CCCHHHHHHHHHHHH
Confidence 98652 222445555665443
No 238
>PRK08999 hypothetical protein; Provisional
Probab=97.41 E-value=0.0011 Score=57.37 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=56.8
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCC--CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
-+.++++.+.+.|+|++.++--..|.-+ ..+..++.+.++++.. ++||++-||| +.+++..++++||++|.+-+.
T Consensus 234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 4667788888899999988653222111 1223456677776665 7999999999 999999999999999998765
Q ss_pred H
Q psy16780 151 A 151 (202)
Q Consensus 151 ~ 151 (202)
|
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 4
No 239
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.38 E-value=0.0011 Score=58.02 Aligned_cols=68 Identities=31% Similarity=0.319 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.++++|+|.|.++.+.|.. ....+.+..+++..+ ++||++ |.+.+.+++.+++.+|||++.++
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 466788999999999987643321 123456677766553 688888 99999999999999999999873
No 240
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.38 E-value=0.013 Score=48.83 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=63.4
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH---hCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA---VGHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
++|+-+-.+++++++..+.++|+++|.. .-||--+.+......+.++++. ...+..|++.+ +|+..++.++..+
T Consensus 105 Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~a~~~ 181 (222)
T PRK12656 105 GYHITATAIYTVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKNVAQVNKAFAL 181 (222)
T ss_pred CCceEEeeeCCHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCCHHHHHHHHHc
Confidence 6777776678889999999999988765 3344323222223444444333 33456666655 9999999999999
Q ss_pred CCCEEEEcHHHHHHhh
Q psy16780 141 GAKMVFVGRPALWGLA 156 (202)
Q Consensus 141 GAd~V~ig~~~l~~~~ 156 (202)
|||.+-+.-.++..+.
T Consensus 182 G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 182 GAQAVTAGPDVFEAAF 197 (222)
T ss_pred CCCEEecCHHHHHHHh
Confidence 9999999998887653
No 241
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.38 E-value=0.0023 Score=53.90 Aligned_cols=73 Identities=27% Similarity=0.139 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.++...+.|++.+.+.--.+. .+.+.+.+.++++.+.+ .+|+...|||||.+|+.+++.+||+-|.+||..+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 5566778889988877543221 13455777888888776 6999999999999999999999999999999765
No 242
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.38 E-value=0.0014 Score=55.24 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.|+...+.|+|.+.+.--.+. ..+.+.+.+.+.++.+.+ .|+...|||||.+|+.+++.+||+-|.+||..+
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 36688889999999887542221 123355777888887764 699999999999999999999999999999655
No 243
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.37 E-value=0.0091 Score=49.92 Aligned_cols=125 Identities=16% Similarity=0.227 Sum_probs=78.1
Q ss_pred ccCccc--cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeeccC--c-----------------------
Q psy16780 46 QLDETI--NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNHG--G----------------------- 96 (202)
Q Consensus 46 ~~d~~~--~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~g--g----------------------- 96 (202)
.+-|++ ..++++++|+.++.|+=+=+ +.+| ..++.+.++|+|.|+++--. .
T Consensus 39 ~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~ 118 (229)
T PRK09722 39 HFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPE 118 (229)
T ss_pred ccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCC
Confidence 344554 45699999988888866554 3445 45788899999999885310 0
Q ss_pred CC----------CC-----------Ccc----chHHHHHHHHHHhC---CCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 97 RQ----------LD-----------YVP----ASIEALPEIAKAVG---HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 97 ~~----------~~-----------~~~----~~~~~l~~i~~~~~---~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|. .| +|. ...+-+.++++... .++.|-.+|||. .+.+.++.++|||.+.+|
T Consensus 119 T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 119 TPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVG 197 (229)
T ss_pred CCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 10 01 121 23333444444332 247799999998 568889999999999999
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780 149 RPALWGLAHSGKSGVRKVLDILINEFD 175 (202)
Q Consensus 149 ~~~l~~~~~~G~~~v~~~i~~l~~~L~ 175 (202)
|..++. ..+...+.++.++..++
T Consensus 198 ss~iF~----~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 198 TSGLFN----LDEDIDEAWDIMTAQIE 220 (229)
T ss_pred hHHHcC----CCCCHHHHHHHHHHHHH
Confidence 875552 11223455666665444
No 244
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.35 E-value=0.0011 Score=54.29 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhcCCCEEEEec---cCHHH-HHHHHHcCCcEEEeeccCcCC---------------------CC------
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI---LTAED-AKIGVEMGASAIMVSNHGGRQ---------------------LD------ 100 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~---~~~~~-a~~l~~aG~d~I~v~~~gg~~---------------------~~------ 100 (202)
..++++++|+..++|+=+|.- .+++. ++.+.++|+|.++++.-.|.. ..
T Consensus 43 G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 43 GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE 122 (215)
T ss_pred CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence 357899999877666668874 23443 477889999999997532210 00
Q ss_pred ------------------Cc----cchHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHhhh
Q psy16780 101 ------------------YV----PASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRPALWGLAH 157 (202)
Q Consensus 101 ------------------~~----~~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~~l~~~~~ 157 (202)
.+ ....+-+.++++....++.+ .+|||+.. .++.+++.+|||.+.+||+++.+
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~--- 198 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNA--- 198 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---
Confidence 00 01112233343333222334 88999875 36778888999999999997632
Q ss_pred cChHHHHHHHHHHHHHHH
Q psy16780 158 SGKSGVRKVLDILINEFD 175 (202)
Q Consensus 158 ~G~~~v~~~i~~l~~~L~ 175 (202)
+...+.++.++++++
T Consensus 199 ---~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---ADPREAAKAINEEIR 213 (215)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 123455666666554
No 245
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.35 E-value=0.0027 Score=51.27 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 52 NWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
..+.++.+++.++ +++....+.+.+.++.+.++|+|++...+. +.+ +.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~----------~~~-~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL----------DPE-VVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC----------CHH-HHHHHHHc--CCcEEC--CcCC
Confidence 4558999998874 666776778899999999999999964221 122 23333434 567776 8899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q psy16780 131 GTDVFKALALGAKMVFVG 148 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig 148 (202)
.+++.+++.+|||.+.+.
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999983
No 246
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.34 E-value=0.0022 Score=52.63 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 51 INWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 51 ~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
...+.|+++++.++ +-|.+..+++.++++.+.++|+++++--+ .+.+.+... +.. ++|.+- |+.
T Consensus 41 ~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~----------~~~~vi~~a-~~~--~i~~iP--G~~ 105 (201)
T PRK06015 41 AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPG----------TTQELLAAA-NDS--DVPLLP--GAA 105 (201)
T ss_pred cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHH-HHc--CCCEeC--CCC
Confidence 35678888887763 44666677999999999999999986411 122333333 333 566665 899
Q ss_pred CHHHHHHHHHhCCCEEEE
Q psy16780 130 YGTDVFKALALGAKMVFV 147 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~i 147 (202)
|+.++..++.+||+.|=+
T Consensus 106 TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 106 TPSEVMALREEGYTVLKF 123 (201)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998754
No 247
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.34 E-value=0.0042 Score=53.51 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=86.7
Q ss_pred ccCccccHHHHHHHHHhc--CCCEE-EEec-------cC--------HHHHHHHHHcCCcEEEeeccCcCCCCCccchHH
Q psy16780 46 QLDETINWSDVTWLKTIT--KLPIV-LKGI-------LT--------AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE 107 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~--~~Pv~-vK~~-------~~--------~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~ 107 (202)
...|-++...++++++.. +.+.. +... .+ .+.|..+++.|+..++++-++...-.-..|.+-
T Consensus 98 l~sPiL~~~~l~~l~~~~~~~~~~~~l~~~f~~~~~~~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lL 177 (287)
T PF04898_consen 98 LDSPILSNGQLEKLRSLDDPGFKAATLDATFPAEGGDEGLEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLL 177 (287)
T ss_dssp ESSSB--HHHHHHHHHH--CCCCEEEEESEEESTTSTTCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHH
T ss_pred ecCCEECHHHHHHHHHhhccCCCccEEEEEEECCcChhHHHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHH
Confidence 445666677788888752 23221 1111 11 245778899999999998754211111123344
Q ss_pred HHHHHHHHh-----CCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcHHH--HHHhhhcC-------hHHHHHHHHHHHH
Q psy16780 108 ALPEIAKAV-----GHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGRPA--LWGLAHSG-------KSGVRKVLDILIN 172 (202)
Q Consensus 108 ~l~~i~~~~-----~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~~~--l~~~~~~G-------~~~v~~~i~~l~~ 172 (202)
++..+.+.+ +.++-||+ +|-+|+.-|+.-.+-.|||+|.=--+| +..+..+| .+.+.++++.+.+
T Consensus 178 Av~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~k 257 (287)
T PF04898_consen 178 AVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGELPELSPEEAIKNYRKALEK 257 (287)
T ss_dssp HHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 445554442 44677777 888999999999999999998522111 11111223 3678899999999
Q ss_pred HHHHHHHHhCCCCHHhhhhc
Q psy16780 173 EFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 173 ~L~~~m~~~G~~~i~el~~~ 192 (202)
+|...|..+|.++++.-++.
T Consensus 258 GllKimSKMGIstl~SY~ga 277 (287)
T PF04898_consen 258 GLLKIMSKMGISTLQSYRGA 277 (287)
T ss_dssp HHHHHHHCTT--BHHHHCCS
T ss_pred HHHHHHHhcChHHhhhcccc
Confidence 99999999999999887765
No 248
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.34 E-value=0.0041 Score=53.62 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=70.3
Q ss_pred HhhhccCccccHHHHHHHHHhcC-CCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---C
Q psy16780 42 YITSQLDETINWSDVTWLKTITK-LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---G 117 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~-~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~ 117 (202)
|+.-.++.+...+.++.+|+..+ .+|.| ++.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ .
T Consensus 166 Hi~~~g~~~~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~ 234 (284)
T PRK06096 166 HRHFLHDPQDWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLA 234 (284)
T ss_pred HHHHhCCcccHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccC
Confidence 33434444445568888887653 44444 668999999999999999999764 233344443333 3
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
+++.+-++||| +.+.+.+...+|+|.+.+|.+
T Consensus 235 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 235 PHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence 57889999998 578888888899999998876
No 249
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.31 E-value=0.0019 Score=57.24 Aligned_cols=90 Identities=24% Similarity=0.232 Sum_probs=60.8
Q ss_pred HHHHHHHHHhc---------CCCEEEEecc---CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 53 WSDVTWLKTIT---------KLPIVLKGIL---TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 53 ~~~i~~i~~~~---------~~Pv~vK~~~---~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
.+.++++++.. +..|.+-... +.+-++.+.++|+|.++++...|.. .-..+.++.+++.++ ++
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s----~~~~~~ik~ik~~~~-~~ 150 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS----EHVIDMIKKIKKKFP-DV 150 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS----HHHHHHHHHHHHHST-TS
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH----HHHHHHHHHHHHhCC-Cc
Confidence 34677776532 2333333322 3577889999999999998754432 223456777777764 79
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|||+ |.|-|.+-+...+.+|||+|-+|
T Consensus 151 ~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 151 PVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp EEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred eEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 9996 88999999999999999999887
No 250
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.31 E-value=0.0057 Score=50.17 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=69.9
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.+..++++..+ +.++|++- +++|+.++..+.++|++.|.+.-.+ .-++ ...++.++.-+ +++|++.+||
T Consensus 82 SP~~~~~vi~~a~-~~~i~~iP-G~~TptEi~~A~~~Ga~~vK~FPa~---~~GG---~~yikal~~pl-p~~~l~ptGG 152 (201)
T PRK06015 82 SPGTTQELLAAAN-DSDVPLLP-GAATPSEVMALREEGYTVLKFFPAE---QAGG---AAFLKALSSPL-AGTFFCPTGG 152 (201)
T ss_pred CCCCCHHHHHHHH-HcCCCEeC-CCCCHHHHHHHHHCCCCEEEECCch---hhCC---HHHHHHHHhhC-CCCcEEecCC
Confidence 4555566777766 45888875 6899999999999999999995421 0011 24455555445 4799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
|.. +++.+.+++|+.+++.|+.+.
T Consensus 153 V~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 153 ISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred CCH-HHHHHHHhCCCeEEEEchhhC
Confidence 865 799999999988777777665
No 251
>PRK01362 putative translaldolase; Provisional
Probab=97.31 E-value=0.012 Score=48.74 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCH
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYG 131 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~ 131 (202)
.++.+++. ++|+-+=.+.+...+..+.++|+++|.. .-||--+.+......+.++.+.+ +.+..|++ ..+|+.
T Consensus 93 a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~ 168 (214)
T PRK01362 93 AVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHP 168 (214)
T ss_pred HHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCH
Confidence 34444332 6777776678888899999999998876 33443344444455555554443 22455555 559999
Q ss_pred HHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 132 TDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
.++.++..+|||.+-+.-.++..+.
T Consensus 169 ~~v~~~~~~G~d~iTi~~~vl~~l~ 193 (214)
T PRK01362 169 MHVLEAALAGADIATIPYKVIKQLF 193 (214)
T ss_pred HHHHHHHHcCCCEEecCHHHHHHHH
Confidence 9999999999999999988887654
No 252
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.30 E-value=0.0073 Score=52.00 Aligned_cols=108 Identities=16% Similarity=0.233 Sum_probs=75.2
Q ss_pred CHHHHHHHHH-cCCcEEEeecc--CcCCCCCccchHHHHHHHHHHhCCCcEEEEec--CCCCHHHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVE-MGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDG--GVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~-aG~d~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G--GI~~~~D~~kal~~GAd~V~ig 148 (202)
++++++.+.+ .|+|++.++.+ .|+.......+++.|.++++.+ ++|+++-| ||. .+++.+++..|++.|-++
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKINID 230 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEEEC
Confidence 7899999886 99999997521 2221112234677889998887 79999999 875 577999999999999999
Q ss_pred HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
|.+..+.. ... ..-.....+.+.+.++..|..+|..
T Consensus 231 T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 231 TDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97654311 011 1223344566777777788877753
No 253
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.30 E-value=0.002 Score=52.56 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=58.7
Q ss_pred cccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
....+.|+.+++++ ++-|.+..+.+.++++.+.++|+++++--+ .+.+.+..++ .. ++|++- |+
T Consensus 44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~-~~--~i~~iP--G~ 108 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAR-EY--GIPYIP--GV 108 (196)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHH-HH--TSEEEE--EE
T ss_pred ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCcccC--Cc
Confidence 34567899888877 455666667999999999999999996421 1233444433 33 688877 89
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy16780 129 RYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~i 147 (202)
.|+.++.+|+.+||+.|=+
T Consensus 109 ~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 109 MTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp SSHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998876
No 254
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.009 Score=49.31 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=72.1
Q ss_pred HhcCCCEEEEec--cCHHHH-HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH
Q psy16780 61 TITKLPIVLKGI--LTAEDA-KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137 (202)
Q Consensus 61 ~~~~~Pv~vK~~--~~~~~a-~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka 137 (202)
+++++-+.+=+. .+++.. +++.++|+|.+.++-+-..+..+..+.++.+..+++.......|-..||| +++++..+
T Consensus 103 ~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~ 181 (217)
T COG0269 103 KEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLF 181 (217)
T ss_pred HHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHH
Confidence 345777777654 456665 55555999999994321112223344467777877766444788889997 68999999
Q ss_pred HHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHH
Q psy16780 138 LALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFD 175 (202)
Q Consensus 138 l~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~ 175 (202)
...|++.|.+||++..+ .+ ..+..+.++++++
T Consensus 182 ~~~~~~ivIvGraIt~a---~d---p~~~a~~~~~~i~ 213 (217)
T COG0269 182 KGIGADIVIVGRAITGA---KD---PAEAARKFKEEID 213 (217)
T ss_pred hcCCCCEEEECchhcCC---CC---HHHHHHHHHHHHh
Confidence 99999999999998742 33 3344455555553
No 255
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.28 E-value=0.0038 Score=54.27 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=67.8
Q ss_pred HHHHHHHHhc-----CCCEEEEeccCHHHHHHHHH------cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780 54 SDVTWLKTIT-----KLPIVLKGILTAEDAKIGVE------MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 54 ~~i~~i~~~~-----~~Pv~vK~~~~~~~a~~l~~------aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi 122 (202)
+.++++++.. ..+|.| ++.+.++++.+.+ +|+|.|-+.|..-. ......+.+.+.+..+.++++.|+
T Consensus 188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~-~~~~~~~~e~l~~av~~~~~~~~l 265 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVP-LENGDVDVSMLKEAVELINGRFET 265 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCccc-ccccCCCHHHHHHHHHhhCCCceE
Confidence 3566666522 234444 5678999999999 99999999885110 011123556666666666667999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 123 YLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 123 ia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
-+|||| +.+.+.+...+|+|.+.+|....
T Consensus 266 EaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 266 EASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 999998 56888888889999999998543
No 256
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.25 E-value=0.0058 Score=54.90 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
.+.++.+++. ++-+.+-.. .++ +.++.+ ..++|.|.+...-..+ +..+.++.+.++++. ..+++|.++|||.
T Consensus 266 ~~ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~-~~~~~I~VdGGI~ 340 (391)
T PRK13307 266 EKAIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKA-GGKILVAVAGGVR 340 (391)
T ss_pred HHHHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHh-CCCCcEEEECCcC
Confidence 3455555543 555555222 234 445554 7899999885311111 223455667777654 3478999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.+++.+++.+|||.+.+||++..
T Consensus 341 -~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 341 -VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred -HHHHHHHHHcCCCEEEEeHHHhC
Confidence 78899999999999999999763
No 257
>KOG4201|consensus
Probab=97.25 E-value=0.0061 Score=50.44 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=60.7
Q ss_pred eccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 71 GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 71 ~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
++.+.++.+++++.|+.-|-+.|+.-..++-...+. ..+.+.++.++-+++-.||+|++|+.+.-..|..+|.+|..
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstT---skL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEs 268 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTT---SKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGES 268 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccceeeechhhH---HHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHH
Confidence 467788889999999998888775432222222222 33333455578899999999999999999999999999999
Q ss_pred HHHH
Q psy16780 151 ALWG 154 (202)
Q Consensus 151 ~l~~ 154 (202)
+++.
T Consensus 269 lmk~ 272 (289)
T KOG4201|consen 269 LMKQ 272 (289)
T ss_pred HHhc
Confidence 9873
No 258
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.22 E-value=0.0025 Score=53.02 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=49.6
Q ss_pred cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 84 aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.|...+-+-.++|. +.+.+.+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 45665555433222 12345667788777653 69999999999999999999999999999998875
No 259
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.19 E-value=0.0051 Score=49.66 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeecc-CcC-CCCCccchHHHHHHHHHHhC---CCcEEEEec
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNH-GGR-QLDYVPASIEALPEIAKAVG---HKVDVYLDG 126 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~-gg~-~~~~~~~~~~~l~~i~~~~~---~~ipiia~G 126 (202)
+.++.+++ .++.+++=.. .+ .+.++... .++|++.+.+. .|+ .........+.+.++++... .++|+++.|
T Consensus 96 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G 173 (211)
T cd00429 96 RTIQLIKE-LGMKAGVALNPGTPVEVLEPYL-DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG 173 (211)
T ss_pred HHHHHHHH-CCCeEEEEecCCCCHHHHHHHH-hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34555543 2444443222 22 34445443 44898877542 222 21111222334555554441 248999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
||+. +++.+++..|||.|.+||+++.
T Consensus 174 GI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 174 GINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred CCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 9996 9999999999999999999984
No 260
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.15 E-value=0.0054 Score=62.67 Aligned_cols=119 Identities=11% Similarity=0.127 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-----hCCCcEEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYL-DGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-----~~~~ipiia-~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.|..+++.|+..+++|-++-..-....|.+-++..+.+. ++.++.||+ +|.+|+.-|++.++..||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 4467788899999999876421111123444445555443 345788888 9999999999999999999995333
Q ss_pred HHH--HHhhhcC------hHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhccc
Q psy16780 150 PAL--WGLAHSG------KSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194 (202)
Q Consensus 150 ~~l--~~~~~~G------~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~~~ 194 (202)
++- ..+...| .+.+.++++.+.++|..+|..+|.++++.-++..+
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqi 733 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQL 733 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccc
Confidence 321 1111223 36788999999999999999999999998876543
No 261
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.15 E-value=0.0093 Score=48.68 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCCEEEEec-cC-HHHHHHHHHcCCcEEEeecc-CcC-CCCCccchHHHHHHHHHHhCC---CcEEEEec
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LT-AEDAKIGVEMGASAIMVSNH-GGR-QLDYVPASIEALPEIAKAVGH---KVDVYLDG 126 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~-~~~a~~l~~aG~d~I~v~~~-gg~-~~~~~~~~~~~l~~i~~~~~~---~ipiia~G 126 (202)
+.++.+++. ++.+++-.. .+ .+.++. ...++|++.+... .|+ .....+...+.+.++++.... ..+|.+.|
T Consensus 100 ~~~~~~~~~-~~~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T PRK05581 100 RLLQLIKSA-GIKAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG 177 (220)
T ss_pred HHHHHHHHc-CCEEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 455555543 555444332 23 444444 3445888877542 222 111111223334444443321 14466889
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
||+. +++.+++..|+|.|.+||+++.
T Consensus 178 GI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 178 GINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 9998 7999999999999999999874
No 262
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.10 E-value=0.004 Score=52.90 Aligned_cols=91 Identities=21% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 76 EDAKIGVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 76 ~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
+.++.+...| +|+|+++|.+ .+.+++++.+..+++.. .++|++..||+ +++.+.+++.. ||++.+||.|=..
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~-~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~ 233 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETV-KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKD 233 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhcc-CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccC
Confidence 5577777666 9999998842 12356788888887644 36899999996 67888888887 9999999986421
Q ss_pred hh----hcChHHHHHHHHHHHHHH
Q psy16780 155 LA----HSGKSGVRKVLDILINEF 174 (202)
Q Consensus 155 ~~----~~G~~~v~~~i~~l~~~L 174 (202)
. ....+.+.++++.+++.+
T Consensus 234 -G~~~n~~D~~rV~~Fm~~v~~~~ 256 (257)
T TIGR00259 234 -GVFNNFVDQARVSQFVEKVAHGL 256 (257)
T ss_pred -CccCCCcCHHHHHHHHHHHHHhc
Confidence 0 112455666666655443
No 263
>PRK12376 putative translaldolase; Provisional
Probab=97.07 E-value=0.03 Score=47.02 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHhcCCCEEEEeccCHHHHHHHHHc----CCcEEEeeccCcCCCCCccchHHHHHHHHHHhC--CCcEEEEecCCC
Q psy16780 56 VTWLKTITKLPIVLKGILTAEDAKIGVEM----GASAIMVSNHGGRQLDYVPASIEALPEIAKAVG--HKVDVYLDGGVR 129 (202)
Q Consensus 56 i~~i~~~~~~Pv~vK~~~~~~~a~~l~~a----G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipiia~GGI~ 129 (202)
++.+++. ++|+-+-.++++.++..+..+ |+++|.. .-||-.+.+......+.++.+.+. .+..|++.+ +|
T Consensus 105 i~~L~~~-GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR 180 (236)
T PRK12376 105 IKKLSAD-GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PR 180 (236)
T ss_pred HHHHHHC-CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cC
Confidence 4444333 677777667777777644444 5777665 334433333334445555544332 356677755 99
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+..++.+++.+|||.+-+.-.++..+.
T Consensus 181 ~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T PRK12376 181 EVYNIIQADQLGCDIITVTPDVLKKLP 207 (236)
T ss_pred CHHHHHHHHHcCCCEEEcCHHHHHHHH
Confidence 999999999999999999988887654
No 264
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.06 E-value=0.031 Score=46.43 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
++++-+=.+++.+++..+..+|+++|... -||--+.+......+.++.+.+ ..+..|++. .+|+..++.+++.+
T Consensus 103 GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaA-S~r~~~~v~~~~~~ 179 (220)
T PRK12653 103 GIPTLGTAVYGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAA-SFKTPRQALDCLLA 179 (220)
T ss_pred CCCeeEEEecCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEE-ecCCHHHHHHHHHc
Confidence 67777666778888888888999988653 2332222333333444443333 335656664 49999999999999
Q ss_pred CCCEEEEcHHHHHHhh
Q psy16780 141 GAKMVFVGRPALWGLA 156 (202)
Q Consensus 141 GAd~V~ig~~~l~~~~ 156 (202)
|||.+-+.-.++..+.
T Consensus 180 G~d~vTip~~vl~~l~ 195 (220)
T PRK12653 180 GCESITLPLDVAQQMI 195 (220)
T ss_pred CCCEEECCHHHHHHHH
Confidence 9999999998887654
No 265
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.0034 Score=58.10 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.+.++|+|.|.+....|+. ...++.++++++.. +++||++ |.|.|.+++..++.+|||++-+|
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~-~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNY-PHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhC-CCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 366788999999999998644422 22356788887765 3688888 99999999999999999999754
No 266
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.05 E-value=0.0037 Score=58.42 Aligned_cols=77 Identities=22% Similarity=0.148 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEeeccCcC--CCCCccchHHHHHHHHHHhCCCcEEEEecCCCCH-----------HHHHHHHHhC
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGR--QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG-----------TDVFKALALG 141 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~-----------~D~~kal~~G 141 (202)
.+.|+...+.|||-+++-.-.+. ......+..+.++++++.+ .+|+..-||||+. +++.+++.+|
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G 347 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG 347 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcC
Confidence 36789999999999887553221 1112234577788888777 7999999999998 5589999999
Q ss_pred CCEEEEcHHHHH
Q psy16780 142 AKMVFVGRPALW 153 (202)
Q Consensus 142 Ad~V~ig~~~l~ 153 (202)
||-|.+++..+.
T Consensus 348 adkV~i~s~Av~ 359 (538)
T PLN02617 348 ADKISIGSDAVY 359 (538)
T ss_pred CCEEEEChHHHh
Confidence 999999997765
No 267
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.05 E-value=0.003 Score=56.94 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.+.++|+|.|.++...|. +....+.+.++++.+ ++++|++ |+|.|.+++..++.+|||+|.+|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~-p~~~vi~-g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKY-PNLDLIA-GNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhC-CCCcEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence 36789999999999998765432 122345677777665 3566555 88999999999999999999876
No 268
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.04 E-value=0.0078 Score=49.74 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 50 TINWSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 50 ~~~~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
....+.|+.+++.+ ++-|....+.+.++++.+.++|+++++.-+. +.+.+..+.+ . .+|++- |+
T Consensus 51 ~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~-~--~i~~iP--G~ 115 (212)
T PRK05718 51 PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE-G--PIPLIP--GV 115 (212)
T ss_pred ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH-c--CCCEeC--CC
Confidence 34567899998876 4556666779999999999999999976321 2234444332 2 566664 79
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy16780 129 RYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~i 147 (202)
.|+.++.+++.+||+.|-+
T Consensus 116 ~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 116 STPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998876
No 269
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0061 Score=51.16 Aligned_cols=75 Identities=32% Similarity=0.371 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.++...+.|+..+++---.| ...+.+.+.+.+.++.+.+ ++||=.-|||||.+++.+.+.+|++.|.+|+.-+
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdg-A~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDG-AKAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccc-cccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence 4778899999999988643111 1123455778889998887 8999999999999999999999999999999543
No 270
>PRK08005 epimerase; Validated
Probab=97.03 E-value=0.025 Score=46.67 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=68.8
Q ss_pred cCccc--cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc---------------C---------cCC
Q psy16780 47 LDETI--NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH---------------G---------GRQ 98 (202)
Q Consensus 47 ~d~~~--~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~---------------g---------g~~ 98 (202)
+=|++ .-+.++++|+.++.|+=+=+ +.+| ..++.+.++|+|.|+++-- | +|.
T Consensus 39 FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp 118 (210)
T PRK08005 39 FINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATP 118 (210)
T ss_pred cCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCC
Confidence 33554 35699999998888866554 3445 4578889999999998521 0 011
Q ss_pred C---------------------CCcc----chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 99 L---------------------DYVP----ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 99 ~---------------------~~~~----~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
. .+|+ ...+-++++++.. .+..|-.+|||. .+.+.++.++|||.+.+||++.
T Consensus 119 ~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 119 LLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 0 1122 2233444444433 234699999987 6778889999999999999865
No 271
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.02 E-value=0.025 Score=48.95 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=60.2
Q ss_pred cCHHHHHHHHHcCCcEEEee--c-cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC--CCCHHHHHHHHHhCCCEEEE
Q psy16780 73 LTAEDAKIGVEMGASAIMVS--N-HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG--VRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG--I~~~~D~~kal~~GAd~V~i 147 (202)
.++++++.+.+.|+|++-++ + ||-..-......++.|.++++.+. ++|+++-|| |. .+++.+++..|++-|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 36899999999999999997 3 322211112346778899988762 499999998 64 47899999999999999
Q ss_pred cHHHHH
Q psy16780 148 GRPALW 153 (202)
Q Consensus 148 g~~~l~ 153 (202)
+|.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 272
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.02 E-value=0.011 Score=48.94 Aligned_cols=117 Identities=19% Similarity=0.116 Sum_probs=67.2
Q ss_pred HHHHHHHHHh-cCCCEEE--EeccCHHH-HHHHHHcCCcEEEeeccCcCC-----------------------C------
Q psy16780 53 WSDVTWLKTI-TKLPIVL--KGILTAED-AKIGVEMGASAIMVSNHGGRQ-----------------------L------ 99 (202)
Q Consensus 53 ~~~i~~i~~~-~~~Pv~v--K~~~~~~~-a~~l~~aG~d~I~v~~~gg~~-----------------------~------ 99 (202)
.+.++++++. .+.||++ |..-.+.. ++.+.++|+|.+++++.++.. .
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 3578999987 4778774 44322333 335889999999998644311 0
Q ss_pred ---C-----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcC
Q psy16780 100 ---D-----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159 (202)
Q Consensus 100 ---~-----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G 159 (202)
+ +..-....+..+++..+.+..+..+|||+-... .+....|||.+.+|||+..+
T Consensus 124 ~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~-~~~~~~~ad~~VvGr~I~~a----- 197 (216)
T PRK13306 124 QWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDL-KLFKGIPVKTFIAGRAIRGA----- 197 (216)
T ss_pred HHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhH-HHHhcCCCCEEEECCcccCC-----
Confidence 0 000011122233333333455899999984321 12334599999999996642
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy16780 160 KSGVRKVLDILINEFDQ 176 (202)
Q Consensus 160 ~~~v~~~i~~l~~~L~~ 176 (202)
+...+.++.++++++.
T Consensus 198 -~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 198 -ADPAAAARAFKDEIAK 213 (216)
T ss_pred -CCHHHHHHHHHHHHHh
Confidence 2234555666666643
No 273
>PRK06801 hypothetical protein; Provisional
Probab=97.02 E-value=0.033 Score=48.06 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEEecC--CCCHHHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYLDGG--VRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia~GG--I~~~~D~~kal~~GAd~V~ig 148 (202)
++++++.+. +.|+|++-++-+.-.....+ ...++.+.++++.+ ++|+++-|| |. .+++.+++.+|++-|-++
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFY 233 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEeh
Confidence 568888877 89999999853211112222 24777889988877 799999998 66 578999999999999999
Q ss_pred HHHHHHhh-------hcCh-------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 149 RPALWGLA-------HSGK-------SGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 149 ~~~l~~~~-------~~G~-------~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
|.+..+.. ...+ .-.....+.+++.++..|..+|..
T Consensus 234 T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 234 TGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 97765311 0111 112333455666677777777653
No 274
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.019 Score=47.56 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=79.6
Q ss_pred ccCcccc--HHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc------------------------CcC
Q psy16780 46 QLDETIN--WSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH------------------------GGR 97 (202)
Q Consensus 46 ~~d~~~~--~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~------------------------gg~ 97 (202)
.+=|+++ -.+++++++.++.|+=|=+ +.++ ..+..+.++|+|.|+++-- ++|
T Consensus 41 hFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~T 120 (220)
T COG0036 41 HFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPAT 120 (220)
T ss_pred CcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCC
Confidence 4556665 4699999998889988775 3455 5578899999999998631 111
Q ss_pred CC---------------------CCc----cchHHHHHHHHHHhCC--CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q psy16780 98 QL---------------------DYV----PASIEALPEIAKAVGH--KVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 98 ~~---------------------~~~----~~~~~~l~~i~~~~~~--~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~ 150 (202)
.. .+| +...+-++++++.... ++-|-.+|||. .+.+.++.++|||.+..||+
T Consensus 121 p~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 121 PLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEE
Confidence 11 122 2344455565555432 56688899985 47777888899999999995
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILINEF 174 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~~L 174 (202)
+.. +. .....++.++..+
T Consensus 200 lF~-----~~-d~~~~i~~~~~~~ 217 (220)
T COG0036 200 LFG-----AD-DYKATIRELRGEL 217 (220)
T ss_pred EeC-----Cc-cHHHHHHHHHHHh
Confidence 542 22 2444555555443
No 275
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=96.99 E-value=0.046 Score=45.47 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=66.9
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
++++-+=.+++++++-.+..+|+++|... -||--+.+......+.++.+.+ +.+..|++. .+|+..++.+++.+
T Consensus 103 GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaA-S~r~~~~v~~~~~~ 179 (220)
T PRK12655 103 GIPTLGTAVYSAAQGLLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAA-SFKTPRQALDCLLA 179 (220)
T ss_pred CCceeEeEecCHHHHHHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEE-ecCCHHHHHHHHHc
Confidence 66666666678888888888999877653 2332222223334444443332 335666664 49999999999999
Q ss_pred CCCEEEEcHHHHHHhhhcC--hHHHHHHHHHH
Q psy16780 141 GAKMVFVGRPALWGLAHSG--KSGVRKVLDIL 170 (202)
Q Consensus 141 GAd~V~ig~~~l~~~~~~G--~~~v~~~i~~l 170 (202)
|||.+-+.-.++..+.... .+++++|.+.|
T Consensus 180 G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 180 GCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred CCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9999999998887654322 24444444433
No 276
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.95 E-value=0.0064 Score=50.62 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhc-----CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780 52 NWSDVTWLKTIT-----KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126 (202)
Q Consensus 52 ~~~~i~~i~~~~-----~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G 126 (202)
..+.|+.+++.. ++-|.+..+++.++++.+.++|+++++--+ .+.+.+..+ +.. ++|++-
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~-~~~--~i~~iP-- 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVC-NRR--KVPYSP-- 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHH-HHc--CCCEeC--
Confidence 456677776433 244566667999999999999999986421 122333333 322 677765
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q psy16780 127 GVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~i 147 (202)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 899999999999999997754
No 277
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.95 E-value=0.0062 Score=52.39 Aligned_cols=93 Identities=14% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+.+.|++++.+.|+.|....-..... +.++.+++.+.+++|||+.-|- +..++.+.. .+|||++++..|
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3467788999999999876553322122222 2345556666778999996665 666666543 379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -+.+++.++++.+.+
T Consensus 104 ~y~~---~~~~~i~~~f~~v~~ 122 (289)
T cd00951 104 YLTE---APQEGLYAHVEAVCK 122 (289)
T ss_pred CCCC---CCHHHHHHHHHHHHh
Confidence 8753 244555555555544
No 278
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.94 E-value=0.0072 Score=52.34 Aligned_cols=94 Identities=15% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+.+.|+++|.+.|+.|....-.... .+.+..+++.+.+++|||+.-|- +..++++.. .+|||+|++..|
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 446778899999999987655322211222 22445566667778999986563 666665544 379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
+++. -..+++.++++.+.+.
T Consensus 111 ~y~~---~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 111 YLTE---APQEGLAAHVEAVCKS 130 (303)
T ss_pred CCCC---CCHHHHHHHHHHHHHh
Confidence 8752 2355566666665543
No 279
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.92 E-value=0.0041 Score=57.67 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+-++.+.++|+|.|.++...|.. ...++.++++++..+ +.+||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~----~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDS----IYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCc----HHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 477899999999999998754432 234567888877652 466665 88999999999999999999765
No 280
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.92 E-value=0.02 Score=47.36 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=65.8
Q ss_pred ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
|.+..++++..++ .++|++- ++.|+.++..+.++|++.|.+.-.+ .. + ....++.++.-+ +.+|++.+|||
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP-G~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~-p~~~~~ptGGV 164 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP-GVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPF-PDVRFCPTGGI 164 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC-CCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccC-CCCeEEEeCCC
Confidence 4444467776664 5788775 5789988999999999999994311 11 1 234555555445 46999999998
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 129 RYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.. +++.+.+.+|+.+++.|+.+.
T Consensus 165 ~~-~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 165 SP-ANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred CH-HHHHHHHhCCCEEEEEChHhC
Confidence 65 899999999965555555544
No 281
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.91 E-value=0.011 Score=48.51 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=59.1
Q ss_pred cHHHHHHHHHhcCCCE--EEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 52 NWSDVTWLKTITKLPI--VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv--~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
..+.|+.+++.++.++ .++.+++.++++.+.++|+|+++..+. +.+.+.. +... .++++. |..
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~----------~~~v~~~-~~~~--~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT----------DPEVIRR-AVAL--GMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC----------CHHHHHH-HHHC--CCcEEc--ccC
Confidence 4568999988876454 444568999999999999999976321 2222222 2322 566555 399
Q ss_pred CHHHHHHHHHhCCCEEEE
Q psy16780 130 YGTDVFKALALGAKMVFV 147 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~i 147 (202)
|++++.++..+|||.+.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999987
No 282
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.91 E-value=0.015 Score=49.72 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=58.9
Q ss_pred HHHHHHHHH---hcCCCEEEEec------cC-H----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC
Q psy16780 53 WSDVTWLKT---ITKLPIVLKGI------LT-A----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH 118 (202)
Q Consensus 53 ~~~i~~i~~---~~~~Pv~vK~~------~~-~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~ 118 (202)
.+.+.++.+ .+++|+++ .. .+ . ..++.+.+.|||.|.+.- +-+.+.++.+..
T Consensus 126 l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y-----------~~~~f~~vv~a~-- 191 (264)
T PRK08227 126 IKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY-----------VEEGFERITAGC-- 191 (264)
T ss_pred HHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC-----------CHHHHHHHHHcC--
Confidence 344455444 36999987 32 11 1 236788999999998722 115667776654
Q ss_pred CcEEEEecCCCC-HHHHH----HHHHhCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVRY-GTDVF----KALALGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~~-~~D~~----kal~~GAd~V~ig~~~l~ 153 (202)
.+||+..||=+. .+|++ .++..||.+|.+||-+..
T Consensus 192 ~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 192 PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 799999999874 33344 566689999999996653
No 283
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.90 E-value=0.025 Score=54.98 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCEEEEec-cCHHHHHHHH----Hc---CCcEEEeeccCcCCCC-Cc--cchHHHHHHHHHHhCC-CcEEE
Q psy16780 56 VTWLKTITKLPIVLKGI-LTAEDAKIGV----EM---GASAIMVSNHGGRQLD-YV--PASIEALPEIAKAVGH-KVDVY 123 (202)
Q Consensus 56 i~~i~~~~~~Pv~vK~~-~~~~~a~~l~----~a---G~d~I~v~~~gg~~~~-~~--~~~~~~l~~i~~~~~~-~ipii 123 (202)
++..|+..+--.+++.+ -+.++++.+. .. |+|++.++--..|.-. +. +..++.+.++++.+.. .+||+
T Consensus 91 ~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~ 170 (755)
T PRK09517 91 YTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASV 170 (755)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEE
Confidence 34445444333455554 4666665432 23 5999998653222211 11 2256777877776621 39999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 124 LDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+-||| +.+++.+++++||++|.+.+.+..
T Consensus 171 AiGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 171 AIGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 99999 889999999999999999999874
No 284
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.89 E-value=0.0043 Score=56.74 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.+.++|+|.|.+....|.. ...++.+.++++.+ +++||++ |++.|.+++..++.+|||+|.+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 467888999999999998754421 22455677777664 4799998 99999999999999999999765
No 285
>PLN02417 dihydrodipicolinate synthase
Probab=96.89 E-value=0.0091 Score=51.14 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~ 150 (202)
+.++.+.+.|+++|.+.|+.|....-.... .+.+..+.+.+++++||++.=|=.+..|+.+. -++|||+|++..|
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 446778899999999988765322111112 22344556666778999985554455665543 3579999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -..+++.++++.+.+
T Consensus 106 ~y~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 106 YYGK---TSQEGLIKHFETVLD 124 (280)
T ss_pred ccCC---CCHHHHHHHHHHHHh
Confidence 8753 245666666665544
No 286
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.87 E-value=0.0079 Score=52.29 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+++.|+++|.+.|+.|....-..... +.+..+++.+++++|||+.=|=.+..++.+.. .+|||+|++-.|
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 4467788999999999887553221111122 23455566677789999855544556665443 369999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -..+++.++++.+.+
T Consensus 113 ~y~~---~~~~~l~~yf~~va~ 131 (309)
T cd00952 113 MWLP---LDVDTAVQFYRDVAE 131 (309)
T ss_pred cCCC---CCHHHHHHHHHHHHH
Confidence 8753 234555555555544
No 287
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.81 E-value=0.011 Score=51.93 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=51.4
Q ss_pred CHHHHHHHHHcC--CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVEMG--ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~aG--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+.+-++.+.++| +|.|+++...|.+ ...++.++.+++..+ .. .+..|.|-|++++..++.+|||+|-+|
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGhs----~~~i~~ik~ir~~~p-~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGYS----EHFVEFVKLVREAFP-EH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHhhCC-CC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 456788889885 9999998754432 224556777776653 34 444588999999999999999998776
No 288
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.80 E-value=0.013 Score=47.95 Aligned_cols=72 Identities=29% Similarity=0.258 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.|+...++|++++.+..-.+. . ....+.+..+++.+ ++||+.-|++++..++..++++|||+|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 37789999999999988543211 1 11335566666655 7999999999999999999999999999887544
No 289
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.80 E-value=0.0065 Score=56.34 Aligned_cols=69 Identities=28% Similarity=0.241 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+-++.+.++|+|.|.|....|.+ ....+.++.+++.++.+++|++ |.|.+.+++..++.+|||++-+|
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~----~~~~~~i~~ir~~~~~~~~V~a-GnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYS----EWQKRTLDWIREKYGDSVKVGA-GNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHhCCCeEeecCccccc----HHHHHHHHHHHHhCCCCceEEe-ccccCHHHHHHHHHcCCCEEEEC
Confidence 356788999999999997543321 1235667777776643455554 89999999999999999998774
No 290
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.78 E-value=0.013 Score=50.47 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~~ 150 (202)
+.++.+.+.|++++.+.|+.|....-... -.+.++.+++.+++++||++.-|-.+..|+++ +.++|||+|++..|
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 44677889999999998865532211111 12234555666777899997555556666543 34479999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
+++. -..+++.+++..+.+.
T Consensus 105 ~y~~---~~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 105 YYNK---PNQEALYDHFAEVADA 124 (294)
T ss_pred cCCC---CCHHHHHHHHHHHHHh
Confidence 8763 2345555555555443
No 291
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.78 E-value=0.015 Score=49.44 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~ 150 (202)
+.++.+.+.|+++|.+.|+.|....-.... .+.+..+++..++++||++.-|=.+..++.+. -.+|||++++..|
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 446778899999999988765432222222 23455566666678999985554555555443 3479999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -+.+++.+++..+.+
T Consensus 102 ~y~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 102 YYNK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred cCCC---CCHHHHHHHHHHHHh
Confidence 8763 234555555555444
No 292
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.77 E-value=0.013 Score=50.84 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHHHHHHHHHHhCCCcEEEE-ecCCCCHHHHH---HHHHhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIEALPEIAKAVGHKVDVYL-DGGVRYGTDVF---KALALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~---kal~~GAd~V~ig~~ 150 (202)
+.++.+++.|+|+|.+.|+.|....-... ..+.+..+++.+++++|||+ .|+..+.+-+. .+-.+|||++++-.|
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44678899999999998876632221111 22345556677778999998 44444433332 223379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILI 171 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~ 171 (202)
++.. -.++++.+.+..+.
T Consensus 109 yY~k---~~~~gl~~hf~~ia 126 (299)
T COG0329 109 YYNK---PSQEGLYAHFKAIA 126 (299)
T ss_pred CCcC---CChHHHHHHHHHHH
Confidence 8863 22344444444443
No 293
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.023 Score=46.64 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=62.9
Q ss_pred cHHHHHHHHHhcCCCEE--EEec---------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 52 NWSDVTWLKTITKLPIV--LKGI---------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~--vK~~---------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
..+.|+++++.+++|+| +|-- .+.+++..+.++|++.|.++.+-....++ +++ ++.+..+ .-
T Consensus 54 gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~k-~~ 126 (229)
T COG3010 54 GVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARIK-YP 126 (229)
T ss_pred chhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHhh-cC
Confidence 67899999999999996 4421 35799999999999999998754322221 333 2222211 12
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
-.++.-.+.|.+|..-|..+|+|.|+-
T Consensus 127 ~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 127 GQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred CcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 245555789999999999999999853
No 294
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.73 E-value=0.035 Score=45.62 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCEEEEe--------c---cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780 53 WSDVTWLKTITKLPIVLKG--------I---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD 121 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~--------~---~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 121 (202)
.+.++++++.+++|++... . .+.++++.+.++|+|.|.+........+ +....+.+..+++. ..+|
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~-~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPD-GETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCC-CCCHHHHHHHHHhC--CCCe
Confidence 6899999999999987321 1 2357899999999998887653211000 01112334444332 3678
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 122 VYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 122 iia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 5789999999999999999774
No 295
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.72 E-value=0.012 Score=51.66 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=51.6
Q ss_pred CHHHHHHHHH--cCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVE--MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~--aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+.+-++.+.+ +|+|.|+++...|.+ ....+.++.+++.+ ++++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 109 d~er~~~L~~~~~g~D~iviD~AhGhs----~~~i~~ik~ik~~~-P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVANGYS----EHFVQFVAKAREAW-PDKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHHhC-CCCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 3566777888 599999998754432 23455677787766 4677776 99999999999999999987543
No 296
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.72 E-value=0.016 Score=50.78 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeecc--Cc-CCCCCcc---chHHHHHHHHHHhCCCcE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNH--GG-RQLDYVP---ASIEALPEIAKAVGHKVD 121 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~--gg-~~~~~~~---~~~~~l~~i~~~~~~~ip 121 (202)
.+.++.+++..++||++++. .+. +.++.+.++|+|+|.+.-. .+ ....+.. ...+.+..+++.+ ++|
T Consensus 90 ~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iP 167 (334)
T PRK07565 90 LELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIP 167 (334)
T ss_pred HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCc
Confidence 44666677777899999985 333 4567788899999998431 11 1111111 1234455665555 689
Q ss_pred EEEe--cCCCCHHHHHHHHH-hCCCEEEEcH
Q psy16780 122 VYLD--GGVRYGTDVFKALA-LGAKMVFVGR 149 (202)
Q Consensus 122 iia~--GGI~~~~D~~kal~-~GAd~V~ig~ 149 (202)
|++- +++.+..++++++. .|+|+|.+..
T Consensus 168 V~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 168 VAVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 9984 55556778888765 8999887744
No 297
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.72 E-value=0.013 Score=50.48 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+.+.|+|++.+.|+.|....-...... .+..+++.+++++||++.=| .+..++++.. .+|||++++-.|
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-GNTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-ccHHHHHHHHHHHHHhCCCEEEECCC
Confidence 44677889999999998876543222222222 34555666777899998555 3455555433 379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
+++. -..+++.++++.+.+.
T Consensus 109 ~y~~---~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 109 YLIN---GEQEGLYAHVEAVCES 128 (296)
T ss_pred CCCC---CCHHHHHHHHHHHHhc
Confidence 8753 2345555555555443
No 298
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.71 E-value=0.023 Score=48.26 Aligned_cols=87 Identities=25% Similarity=0.279 Sum_probs=59.7
Q ss_pred HHHHHH-HHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 76 EDAKIG-VEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 76 ~~a~~l-~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
+.++.+ ...++|+|+|+|.. .+.+++.+.+.++++.+ .+||+..+|+ |.+.+.+.+.. ||++.+||.|-..
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKD 233 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeC
Confidence 445555 57899999998742 12366788888888877 3999998885 67888887755 9999999987532
Q ss_pred hhhc---ChHHHHHHHHHH
Q psy16780 155 LAHS---GKSGVRKVLDIL 170 (202)
Q Consensus 155 ~~~~---G~~~v~~~i~~l 170 (202)
=... .++.+.++++..
T Consensus 234 G~~~n~VD~~Rv~~fm~~v 252 (254)
T PF03437_consen 234 GKWENPVDPERVRRFMEAV 252 (254)
T ss_pred CEeCCcCCHHHHHHHHHHh
Confidence 0001 135566555543
No 299
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=96.70 E-value=0.016 Score=49.91 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=57.7
Q ss_pred HHHHHHHHcC-CcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780 76 EDAKIGVEMG-ASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR 149 (202)
Q Consensus 76 ~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~ 149 (202)
+.++.+++.| +++|.+.|+.|....-..... +.+..+++..++++||++.=|=.+..|+++. -.+|||+|++..
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4467788999 999999887664322222222 2345556666778999885333344554433 347999999999
Q ss_pred HHHHHhhhcChHHHHHHHHHHH
Q psy16780 150 PALWGLAHSGKSGVRKVLDILI 171 (202)
Q Consensus 150 ~~l~~~~~~G~~~v~~~i~~l~ 171 (202)
|+++. ...+++.++++.+.
T Consensus 105 P~y~~---~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 105 PFYYK---FSFPEIKHYYDTII 123 (290)
T ss_pred CcCCC---CCHHHHHHHHHHHH
Confidence 98753 23455555555543
No 300
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.69 E-value=0.018 Score=47.11 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCH-HHHHHHHHcCCcEEEeecc------------------------CcCCC------
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTA-EDAKIGVEMGASAIMVSNH------------------------GGRQL------ 99 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~-~~a~~l~~aG~d~I~v~~~------------------------gg~~~------ 99 (202)
..+.++++++.+++|+=+=+ +.+| ..++.+.++|+|.|.++-- .+|..
T Consensus 45 g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~ 124 (201)
T PF00834_consen 45 GPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPY 124 (201)
T ss_dssp -HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTT
T ss_pred CHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHH
Confidence 46799999999888887664 3344 5578888999998888521 01110
Q ss_pred ---------------CCcc----chHHHHHHHHHHh---CCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 100 ---------------DYVP----ASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 100 ---------------~~~~----~~~~~l~~i~~~~---~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+|. ...+-++++++.. +.++.|..+|||+. +.+.++.++|||.+.+||.+.
T Consensus 125 l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 125 LDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp GCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred hhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 1222 2334444444332 34699999999976 478888899999999999865
No 301
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.65 E-value=0.01 Score=54.80 Aligned_cols=68 Identities=25% Similarity=0.305 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.+.++|+|.|.+..+.|. +....+.++++++.+ ++++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 229 ~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~-p~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 229 AAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALD-PGVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHC-CCCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 36678899999999999875443 233556778887766 3687877 89999999999999999997633
No 302
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.62 E-value=0.012 Score=54.32 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+-++.+.++|+|.|.++.+.|+. ....+.++.+++.+ .++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 466888999999999998754542 23455677777654 4799999 77999999999999999998754
No 303
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.61 E-value=0.037 Score=47.41 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCC-CEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH--hCCCcEEEEecCCCC
Q psy16780 54 SDVTWLKTITKL-PIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA--VGHKVDVYLDGGVRY 130 (202)
Q Consensus 54 ~~i~~i~~~~~~-Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipiia~GGI~~ 130 (202)
+.+++.|+..+. |-+-=++-+.+++..+.++|+|.|-++|. +.+.++++.+. .++++-+=+|||| +
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgI-t 244 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGI-T 244 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCC-C
Confidence 477777776543 21222468999999999999999999885 23444554444 4557888889997 5
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~ 151 (202)
.+.+......|.|.+.+|.+-
T Consensus 245 ~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 245 LENIREYAETGVDVISVGALT 265 (280)
T ss_pred HHHHHHHhhcCCCEEEeCccc
Confidence 688888888999999999754
No 304
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.59 E-value=0.024 Score=49.86 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCC--cEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGA--SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.+..+.++|+ |.|.++...|. .....+.+.++++.. +++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 366788899965 99999764331 123445577777665 3477666 66889999999999999998876
No 305
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.58 E-value=0.1 Score=43.83 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHH---HHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHhC--CCcEEEEec
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKI---GVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAVG--HKVDVYLDG 126 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~---l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipiia~G 126 (202)
.+.++.+++. ++++-+-.+.++.++.. +..+| +++|... -||--|.+......+.++++.+. .+..|++.+
T Consensus 102 l~ai~~L~~~-GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS 178 (236)
T TIGR02134 102 GPLIQKLSAD-GITLNVTALTTIEQVEKVCQSFTDGVPGIVSVF--AGRIADTGVDPEPHMREALEIVAQKPGVELLWAS 178 (236)
T ss_pred HHHHHHHHHC-CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3445555443 77887777788888776 44589 5887763 34433333333344444433331 367777765
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++.++..+|||.+-+.-.++..+.
T Consensus 179 -~R~~~~v~~a~~~Gad~vTvp~~v~~~l~ 207 (236)
T TIGR02134 179 -PRELFNIIQADRIGCDIITCAHDILAKLP 207 (236)
T ss_pred -cCCHHHHHHHHHcCCCEEECCHHHHHHHH
Confidence 99999999999999999999988887653
No 306
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.56 E-value=0.066 Score=43.94 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=61.8
Q ss_pred cHHHHHHHHHhcCCCEEE---Eec--------cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 52 NWSDVTWLKTITKLPIVL---KGI--------LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~v---K~~--------~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
..+.++++++.+++|++. |.. .+.++++.+.++|+|.|.+.....+. ..+....+.+..+++.. ++
T Consensus 48 ~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p~~~~~~~~i~~~~~~g--~~ 124 (219)
T cd04729 48 GVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-PDGETLAELIKRIHEEY--NC 124 (219)
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCcCHHHHHHHHHHHh--CC
Confidence 457889998888999863 221 23568899999999988775422110 00012223445554443 57
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|++. ++.|.+++..+..+|+|.+.+.
T Consensus 125 ~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 125 LLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred eEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 7776 6899999999999999998653
No 307
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.53 E-value=0.027 Score=48.25 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+.+++++.. .+|||+|++..|
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4467788999999999776554322112222 23455566667789999844444555554333 369999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -..+.+.++++.+.+
T Consensus 103 ~y~~---~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 103 YYNK---PTQEGLYQHFKAIAE 121 (285)
T ss_pred cCCC---CCHHHHHHHHHHHHh
Confidence 8753 234555555555443
No 308
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.52 E-value=0.091 Score=43.93 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCEEEEec----cCHHHHHHHHHcCCcEEEeec-cCcCC-CCCccchHHHHHHHHHHhC---CCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI----LTAEDAKIGVEMGASAIMVSN-HGGRQ-LDYVPASIEALPEIAKAVG---HKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~----~~~~~a~~l~~aG~d~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~ipii 123 (202)
.+.+++||+. +.++-+++. ...+.++.+++. +|.|.+=. .+|.. ....+...+-+.++++... .++.|-
T Consensus 106 ~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie 183 (228)
T PRK08091 106 ALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLIS 183 (228)
T ss_pred HHHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 4578888865 554444444 345777777664 88887643 22211 1112233444555444332 257799
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 124 LDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+|||+ .+.+.++.++|||.+.+||++.
T Consensus 184 VDGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 184 IDGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred EECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 999997 5688899999999999999864
No 309
>PRK08185 hypothetical protein; Provisional
Probab=96.52 E-value=0.12 Score=44.49 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=73.6
Q ss_pred CHHHHHHHHHc-CCcEEEeecc--CcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEE
Q psy16780 74 TAEDAKIGVEM-GASAIMVSNH--GGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFV 147 (202)
Q Consensus 74 ~~~~a~~l~~a-G~d~I~v~~~--gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~i 147 (202)
++++++...+. |+|++.++-+ +|.-..+.. -+++.|.++++.+ ++|+++-||... .+++.+++.+|..=|-+
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 67888888876 9999998542 121111112 2577889998877 799999999865 46677799999999999
Q ss_pred cHHHHHHh----h---hcCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 148 GRPALWGL----A---HSGK------SGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 148 g~~~l~~~----~---~~G~------~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+|.+-.+. . .+.+ .-.....+.+.+.++..|..+|..
T Consensus 228 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 228 SSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred ChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99655431 1 0111 223344456777777888888764
No 310
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.51 E-value=0.029 Score=49.16 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=52.3
Q ss_pred HHHHHHHHcC--CcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 76 EDAKIGVEMG--ASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 76 ~~a~~l~~aG--~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+.+..+.++| +|.|+++...|.+ ..-++.++.+++.. ..|.+..|.|.+.+++..++.+|||+|-+|
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s----~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHS----NSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCch----HHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 5567788999 7999998754421 23455677777766 568888899999999999999999999877
No 311
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.48 E-value=0.023 Score=48.85 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=58.6
Q ss_pred HHHHHHHH-cCCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcH
Q psy16780 76 EDAKIGVE-MGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGR 149 (202)
Q Consensus 76 ~~a~~l~~-aG~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~ 149 (202)
+.++.+.+ .|+++|.+.|+.|....-.... ...+..+++.+++++|||+.=|=.+..++++. -.+|||+|++..
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 44677888 9999999988766432211222 22345556667778999995454556666543 357999999999
Q ss_pred HHHHHhhhcChHHHHHHHHHHH
Q psy16780 150 PALWGLAHSGKSGVRKVLDILI 171 (202)
Q Consensus 150 ~~l~~~~~~G~~~v~~~i~~l~ 171 (202)
|+++. ...+++.++++.+.
T Consensus 108 P~y~~---~~~~~l~~~f~~va 126 (293)
T PRK04147 108 PFYYP---FSFEEICDYYREII 126 (293)
T ss_pred CcCCC---CCHHHHHHHHHHHH
Confidence 98753 12344444444443
No 312
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.45 E-value=0.025 Score=48.55 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=58.5
Q ss_pred HHHHHHHHc-CCcEEEeeccCcCCCCCccch-HHHHHHHHHHhCCCcEEEEecCCCCHHHHHH----HHHhCCCEEEEcH
Q psy16780 76 EDAKIGVEM-GASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFK----ALALGAKMVFVGR 149 (202)
Q Consensus 76 ~~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipiia~GGI~~~~D~~k----al~~GAd~V~ig~ 149 (202)
..++.+.+. |++++.+.|+.|....-.... .+.++.+++.+.+++|||+.=|=.+..++.+ +..+|||++++..
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 446778889 999999988765432111112 2234555666677899998333234444443 3347999999999
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHH
Q psy16780 150 PALWGLAHSGKSGVRKVLDILINE 173 (202)
Q Consensus 150 ~~l~~~~~~G~~~v~~~i~~l~~~ 173 (202)
|+++. -..+++.++++.+.+.
T Consensus 105 P~y~~---~~~~~i~~~~~~v~~a 125 (288)
T cd00954 105 PFYYK---FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCCCC---CCHHHHHHHHHHHHHh
Confidence 98753 2345555555555443
No 313
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.44 E-value=0.047 Score=46.17 Aligned_cols=71 Identities=25% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.|+...++||.+|.|-.-+ .+. ..+.+.+..+++.+ ++||+.-+.|-++.++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~--~~F--~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQ--SYF--GGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCC--CcC--CCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 66888999999999875421 111 12567777787777 8999999999999999999999999997765554
No 314
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.43 E-value=0.029 Score=47.85 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHH----HHhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKA----LALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka----l~~GAd~V~ig~~ 150 (202)
+.++.+.+.|++++.+.|+.|....-..... +.+..+++.+.+++||++.=|=.+..++++. -.+|||+|++..|
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 4467889999999999876553322112222 2344556666678998873333455555543 3479999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
.++. -..+.+.++++.+.+
T Consensus 105 ~~~~---~~~~~l~~~~~~ia~ 123 (284)
T cd00950 105 YYNK---PSQEGLYAHFKAIAE 123 (284)
T ss_pred ccCC---CCHHHHHHHHHHHHh
Confidence 7653 234545555555443
No 315
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=96.40 E-value=0.019 Score=49.13 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
+.++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+-.++++.. .+|||++++..|
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 4567788999999999887653222112222 23445566677789999843434555554433 379999999998
Q ss_pred HHHHhhhcChHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDIL 170 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l 170 (202)
++.. -..+++.++++.+
T Consensus 106 ~~~~---~s~~~l~~y~~~i 122 (289)
T PF00701_consen 106 YYFK---PSQEELIDYFRAI 122 (289)
T ss_dssp TSSS---CCHHHHHHHHHHH
T ss_pred cccc---chhhHHHHHHHHH
Confidence 7642 2344444444443
No 316
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.043 Score=45.24 Aligned_cols=96 Identities=22% Similarity=0.162 Sum_probs=68.2
Q ss_pred CccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.|.++-++++... ..++|++- ++.|+.++..+.++|++.+.+.-... .+++ ..+..+. .-...++++.+||
T Consensus 91 sP~~~~ev~~~a~-~~~ip~~P-G~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~-gP~~~v~~~pTGG 161 (211)
T COG0800 91 SPGLNPEVAKAAN-RYGIPYIP-GVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALA-GPFPQVRFCPTGG 161 (211)
T ss_pred CCCCCHHHHHHHH-hCCCcccC-CCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHc-CCCCCCeEeecCC
Confidence 4555556666555 45888875 68999999999999999999864311 1111 2222221 1224699999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
|.. ..+.+.+++|+.+|++|+.+..
T Consensus 162 Vs~-~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 162 VSL-DNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred CCH-HHHHHHHhCCceEEecCccccC
Confidence 865 5999999999999999998774
No 317
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.34 E-value=0.024 Score=47.05 Aligned_cols=72 Identities=25% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA--LGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~--~GAd~V~ig~~~l 152 (202)
.+.|+...+.|+|.+.+.--.+. .+.+.+.+.+.++++. +|+...|||||.+|+.+++. .||+-|.+||..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 47788889999999987543222 1345567778887663 58999999999999999866 2799999999755
No 318
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.32 E-value=0.14 Score=44.17 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=74.8
Q ss_pred cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780 73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG 148 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig 148 (202)
.+|++|+... +.|+|.+-++-+.-...+.+.| +++.|.++++.+ ++|++.-||=..+ +++.+++.+|..=|-++
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3688888876 5899999887532222222333 567789998887 8999999987665 77888999999999999
Q ss_pred HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
|.+-.+.. ... ..-.....+.+++.++..|..+|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 234 TENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 96543311 011 1223344456677777777777754
No 319
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.23 E-value=0.038 Score=47.42 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
..++.+.+.|++++.+.|+.|....-..... +.+..+++.+++++||++.=|=.+..++++.. .+|||+|++..|
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4467788999999999776553322122222 23455666677789988733333444544332 379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. -+.+++.++++.+.+
T Consensus 106 ~~~~---~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 106 YYNK---PTQEGLYQHFKAIAE 124 (292)
T ss_pred cCCC---CCHHHHHHHHHHHHh
Confidence 8753 234555555555543
No 320
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=96.18 E-value=0.076 Score=45.23 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCCEEEEe---ccCHHHHHHHHHcC-CcEEEeeccCcCCCCCccchHHHHHHHHHHh-------CCCcEE
Q psy16780 54 SDVTWLKTITKLPIVLKG---ILTAEDAKIGVEMG-ASAIMVSNHGGRQLDYVPASIEALPEIAKAV-------GHKVDV 122 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~---~~~~~~a~~l~~aG-~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipi 122 (202)
+.++.+++..+.|...|. ..+.+++..+.++| +|+|.+++.+. ...+....+.+.. .+++-+
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSP-------EELDPAVLILKARAHLDGKGLPRVKI 242 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-------HHHHHHHHHHHHHHhhhhcCCCceEE
Confidence 466777766543355553 25688888999999 99999977432 1112111111111 136889
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 123 YLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 123 ia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
++||||. .+.+......|.|.+++|+.+.
T Consensus 243 ~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 243 EASGGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred EEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999997 8888888889999999999775
No 321
>PRK06852 aldolase; Validated
Probab=96.15 E-value=0.11 Score=45.34 Aligned_cols=96 Identities=19% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHHHHHHHh---cCCCEEEEec---------cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh
Q psy16780 53 WSDVTWLKTI---TKLPIVLKGI---------LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116 (202)
Q Consensus 53 ~~~i~~i~~~---~~~Pv~vK~~---------~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 116 (202)
++.+.++.+. +++|+++-.- .++ ..++.+.+.|||.|.+--.+ +.+..+.+.+.++.+..
T Consensus 153 l~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~ 228 (304)
T PRK06852 153 LSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA 228 (304)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC
Confidence 4445555444 5899986221 122 23578899999999984321 00012345666665543
Q ss_pred CCCcEEEEecCCCC-HHHHH----HHHH-hCCCEEEEcHHHHH
Q psy16780 117 GHKVDVYLDGGVRY-GTDVF----KALA-LGAKMVFVGRPALW 153 (202)
Q Consensus 117 ~~~ipiia~GGI~~-~~D~~----kal~-~GAd~V~ig~~~l~ 153 (202)
+.+||+.+||=+. .+|++ .++. .||.+|.+||-...
T Consensus 229 -g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 229 -GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred -CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 3699999999874 33444 4556 79999999997653
No 322
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.10 E-value=0.03 Score=51.72 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
.+.++.+.++|+|.+++....|.. ...++.+..+++.. +++||++ |++.|.+++..++.+|||+|.+|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 577899999999998886533321 12344566666654 3688888 99999999999999999999775
No 323
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.04 E-value=0.22 Score=42.91 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=74.2
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc-chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEcHH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP-ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVGRP 150 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig~~ 150 (202)
++++++... +.|+|.+-++-+.-...+.+| .+++.+.++++.+ ++|++.-||=..+ +++.+++.+|+.-|-++|.
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Te 231 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASD 231 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHH
Confidence 678887765 699999988753212222222 2567889998877 8999999987665 7778899999999999997
Q ss_pred HHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 151 ALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 151 ~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+..+. . ... ..-.....+.+++..+..|..+|..
T Consensus 232 l~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 232 LRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred HHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 65431 1 011 1123344456777788888888764
No 324
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.02 E-value=0.11 Score=41.04 Aligned_cols=65 Identities=23% Similarity=0.117 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC-CcEEEE-ecCCC-------CHHHHHHHHHhCCCEEE
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH-KVDVYL-DGGVR-------YGTDVFKALALGAKMVF 146 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipiia-~GGI~-------~~~D~~kal~~GAd~V~ 146 (202)
+.++.+.+.|+++|.+.+ ..+..+++..++ ++|+++ .|.-. +.+.+.++..+|||+++
T Consensus 17 ~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 446778899999998854 445666666666 799887 34333 23455566778999999
Q ss_pred EcHHHHH
Q psy16780 147 VGRPALW 153 (202)
Q Consensus 147 ig~~~l~ 153 (202)
+..++..
T Consensus 84 v~~~~~~ 90 (201)
T cd00945 84 VVINIGS 90 (201)
T ss_pred EeccHHH
Confidence 9887765
No 325
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.00 E-value=0.3 Score=42.19 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=72.8
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
+|++|+... +.|+|.+-++-+.-...+.+. -+++.|.++++.+ ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T 233 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 688888776 479999988753222222222 3677899998888 899999886433 5778889999999999999
Q ss_pred HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.+-.+.. ... ..-.....+.+++-++..|..+|..
T Consensus 234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 234 ELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654321 011 1223344455677777777777754
No 326
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.89 E-value=0.023 Score=47.43 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
...|+|.-|||||++.+.+...+|||.+..|+.+..
T Consensus 190 ~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 190 SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 356999999999999999999999999999987653
No 327
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.89 E-value=0.35 Score=42.16 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=73.1
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCC--cc--chHHHHHHHHHHhCCCcEEEEecCCCCHH----------------
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDY--VP--ASIEALPEIAKAVGHKVDVYLDGGVRYGT---------------- 132 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~--~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~~---------------- 132 (202)
+|++|+... +.|+|.+-++-+.-...+. +. -+++.|.++++.+ ++|++.-||=..++
T Consensus 156 dPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~~ 233 (307)
T PRK05835 156 NPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKGS 233 (307)
T ss_pred CHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccccc
Confidence 578888876 5799998886532112221 23 3677899998887 89999999766665
Q ss_pred ------HHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 133 ------DVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 133 ------D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
++.+++.+|..=|-+++.+..+.. ... ..-.....+.+++-.+..|..+|..
T Consensus 234 ~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 234 KGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999999999999997654311 011 1123334455666677777777753
No 328
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=95.89 E-value=0.072 Score=46.31 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=61.6
Q ss_pred HHHHHHHHhcC--CCEEEEeccCH----HHHHHHHHc---CCcEEEeeccCcCCCCCccchHHHHHHHHHH---hC-CCc
Q psy16780 54 SDVTWLKTITK--LPIVLKGILTA----EDAKIGVEM---GASAIMVSNHGGRQLDYVPASIEALPEIAKA---VG-HKV 120 (202)
Q Consensus 54 ~~i~~i~~~~~--~Pv~vK~~~~~----~~a~~l~~a---G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~-~~i 120 (202)
+.++..++..+ .|+.+ ++-+. .++..+.++ ++|.|.+++.+++ .+. +.+.+.++++. .+ +++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~--~G~--~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR--RGV--FRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC--CCC--HHHHHHHHHHHHHhCCCCCe
Confidence 46677777664 56665 44333 345555555 4899999885431 111 22333444333 32 468
Q ss_pred EEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 121 DVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
.|++|||| +.+.+.+....|+|.+.+|+.+..
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 889999998999999999997653
No 329
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.87 E-value=0.17 Score=42.81 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc---cchHHHHHHHHHHhCCCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV---PASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipii 123 (202)
.+.++++.+ ++.||++|-. .++++ ++.+.+.|..-|.+--+|-+..... ..++..+..+++.. .+|||
T Consensus 112 ~~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVi 188 (250)
T PRK13397 112 FEFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPII 188 (250)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeE
Confidence 556777664 4899999965 46555 4566778887666653332222211 34556677776655 68999
Q ss_pred Ee----cCCCC--HHHHHHHHHhCCCEEEEcHHH
Q psy16780 124 LD----GGVRY--GTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 124 a~----GGI~~--~~D~~kal~~GAd~V~ig~~~ 151 (202)
.+ +|.|. ..-...|+++|||++++=+.+
T Consensus 189 vd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 189 VDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred ECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 85 45444 233556778999999987644
No 330
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.86 E-value=0.35 Score=41.72 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=72.0
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
+|++++... +.|+|.+-++.+.-...+.+. -+++.|.++++.+ ++|++.-||=.. -+++.+++..|..=|-++|
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 156 DPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 678888876 479999988753211222222 3667899998887 799999886433 4678889999999999999
Q ss_pred HHHHHhh-------hcCh------HHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 150 PALWGLA-------HSGK------SGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 150 ~~l~~~~-------~~G~------~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.+..+.. ...+ .-.....+.+++..+..|..+|..
T Consensus 234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 234 ELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7653311 0111 113334455667777777777753
No 331
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.80 E-value=0.091 Score=44.18 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCEEEEecc---C----HHHHHHHHHcCCcEEEeeccC-----cCCCC-Cccch---HHHHHHHHHHhC
Q psy16780 54 SDVTWLKTITKLPIVLKGIL---T----AEDAKIGVEMGASAIMVSNHG-----GRQLD-YVPAS---IEALPEIAKAVG 117 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~~---~----~~~a~~l~~aG~d~I~v~~~g-----g~~~~-~~~~~---~~~l~~i~~~~~ 117 (202)
+.++.|...+++||++=.-. + .+.++.+.++|+++|.+-... |.... ...+. .+.+..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 35566666678998886543 3 344678889999999994321 10000 01122 223444444444
Q ss_pred C--CcEEEEe-----cCCCCHHHHH---H-HHHhCCCEEEEcHH
Q psy16780 118 H--KVDVYLD-----GGVRYGTDVF---K-ALALGAKMVFVGRP 150 (202)
Q Consensus 118 ~--~ipiia~-----GGI~~~~D~~---k-al~~GAd~V~ig~~ 150 (202)
. +++|++= -|-.+.++++ + +.++|||++++-.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4 7888885 2112333443 2 23479999998643
No 332
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=95.74 E-value=0.4 Score=41.44 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=73.9
Q ss_pred cCHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780 73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG 148 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig 148 (202)
.+|++++... +.|+|.+-++-+.-...+.+.| +++.|.++++.+ ++|++.-||=..+ +++.+++..|..=|-++
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 3688888876 5799999987532222222333 567789998887 8999999987666 67788999999999999
Q ss_pred HHHHHH----hh---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 149 RPALWG----LA---HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 149 ~~~l~~----~~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+.+-.+ +. ... ..-.....+.+++.++..|..+|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 234 TENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred cHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 976432 11 011 1113334455666777777777754
No 333
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.70 E-value=0.16 Score=43.86 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCEEEEecc--CH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 56 VTWLKTITKLPIVLKGIL--TA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 56 i~~i~~~~~~Pv~vK~~~--~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
.+.+++..+.|+++.+.. ++ +.++.+.+.|+++|.++..- ...+....++.+.++++.+ ++||+.- ++.
T Consensus 107 ~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~--p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~ 181 (299)
T cd02809 107 LEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDT--PVLGRRLTWDDLAWLRSQW--KGPLILK-GIL 181 (299)
T ss_pred HHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCC--CCCCCCCCHHHHHHHHHhc--CCCEEEe-ecC
Confidence 445555555788877642 33 34667788999999985421 1111113567788887776 6898885 589
Q ss_pred CHHHHHHHHHhCCCEEEEc
Q psy16780 130 YGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig 148 (202)
+.+++.++..+|||+|.+.
T Consensus 182 s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 182 TPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999999884
No 334
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=95.68 E-value=0.087 Score=44.88 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=48.1
Q ss_pred EEEEeccCHHHHHHHHHcCCcEEEeecc---CcCC-CCCccc---hHHHHHHHHH---HhCCCcEEEEecC-CCCHHHHH
Q psy16780 67 IVLKGILTAEDAKIGVEMGASAIMVSNH---GGRQ-LDYVPA---SIEALPEIAK---AVGHKVDVYLDGG-VRYGTDVF 135 (202)
Q Consensus 67 v~vK~~~~~~~a~~l~~aG~d~I~v~~~---gg~~-~~~~~~---~~~~l~~i~~---~~~~~ipiia~GG-I~~~~D~~ 135 (202)
+.+-.+.++++++...++|+|.|+++-. +|+. .+...+ ..+.+.++.+ .+++++-+++.|| |.+++|+.
T Consensus 152 ~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~ 231 (268)
T PF09370_consen 152 FTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQ 231 (268)
T ss_dssp EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHH
T ss_pred eeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 3445678999999999999999998532 2221 111111 1122333333 3455666666665 89999999
Q ss_pred HHHHh--CCCEEEEcHHH
Q psy16780 136 KALAL--GAKMVFVGRPA 151 (202)
Q Consensus 136 kal~~--GAd~V~ig~~~ 151 (202)
..+.. |++++.=||.+
T Consensus 232 ~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 232 YVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHHHH-TTEEEEEESTTT
T ss_pred HHHhcCCCCCEEecccch
Confidence 99984 68888877765
No 335
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.60 E-value=0.32 Score=38.96 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=60.1
Q ss_pred HHHHHHHHHh-cCCCEEE--Eecc-CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEe-c
Q psy16780 53 WSDVTWLKTI-TKLPIVL--KGIL-TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLD-G 126 (202)
Q Consensus 53 ~~~i~~i~~~-~~~Pv~v--K~~~-~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~-G 126 (202)
.+.++++++. .+.|+++ |... ....++.+.++|+|+++++.... +.+.. .+..++ .. .++++.+ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~-~~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAK-KY--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHH-Hc--CCeEEEEEe
Confidence 6789999987 4888887 4332 22457899999999999965321 11122 233332 22 5677664 6
Q ss_pred CCCCHHHHHHHHHhCCCEEEEc
Q psy16780 127 GVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig 148 (202)
+..|+.++.+++..|+|.|.+.
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 7899999999888899999885
No 336
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.51 E-value=0.062 Score=44.75 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=47.4
Q ss_pred HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH-----------HHHHHHHhCCCEEEE
Q psy16780 79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT-----------DVFKALALGAKMVFV 147 (202)
Q Consensus 79 ~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~-----------D~~kal~~GAd~V~i 147 (202)
+.+.+.|+|+++.+.. .+..+++..+ +-.++.++||+ +. .+..++..|||.+.+
T Consensus 142 ~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVv 206 (230)
T PRK00230 142 KLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVV 206 (230)
T ss_pred HHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEE
Confidence 4456788888876431 1244444443 34457779997 33 477788899999999
Q ss_pred cHHHHHHhhhcChHHHHHHHHHHHHHH
Q psy16780 148 GRPALWGLAHSGKSGVRKVLDILINEF 174 (202)
Q Consensus 148 g~~~l~~~~~~G~~~v~~~i~~l~~~L 174 (202)
||+++.+ ..+ ....+.+.+++
T Consensus 207 GR~I~~a---~dP---~~~a~~i~~~i 227 (230)
T PRK00230 207 GRPITQA---ADP---AAAYEAILAEI 227 (230)
T ss_pred CCcccCC---CCH---HHHHHHHHHHh
Confidence 9998853 223 23445555544
No 337
>PLN02535 glycolate oxidase
Probab=95.44 E-value=0.15 Score=45.44 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc----CcCC--------------CC----------
Q psy16780 55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH----GGRQ--------------LD---------- 100 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~----gg~~--------------~~---------- 100 (202)
-+++|.+..+-|.+..+- .+.+.++++.++|+.+++++-. |-|. ..
T Consensus 114 slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 193 (364)
T PLN02535 114 TVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSD 193 (364)
T ss_pred CHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcc
Confidence 455555555668888764 2456678899999999988531 1110 00
Q ss_pred -------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 101 -------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 101 -------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
....+|+.+..+++.. ++|||+ .||.+++|+.++..+|+|+|.+.
T Consensus 194 ~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 194 KGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred ccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123667777776654 799888 66999999999999999999885
No 338
>PRK14057 epimerase; Provisional
Probab=95.42 E-value=0.39 Score=40.83 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCC-------EEEEec----cCHHHHHHHHHcCCcEEEeec-cCcCC-CCCccchHHHHHHHHHHhC--
Q psy16780 53 WSDVTWLKTITKLP-------IVLKGI----LTAEDAKIGVEMGASAIMVSN-HGGRQ-LDYVPASIEALPEIAKAVG-- 117 (202)
Q Consensus 53 ~~~i~~i~~~~~~P-------v~vK~~----~~~~~a~~l~~aG~d~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~-- 117 (202)
.+.+++||+. +.+ +-+++. ...+.++..++. +|.|.+=. .+|.. ....+...+-++++++...
T Consensus 113 ~~~l~~Ir~~-G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~ 190 (254)
T PRK14057 113 HHTLSWLGQQ-TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDK 190 (254)
T ss_pred HHHHHHHHHc-CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhc
Confidence 4577888875 332 223333 345777777764 88877633 22211 1112334444555444332
Q ss_pred -CCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 118 -HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 118 -~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.++.|-++|||.. +.+.++.++|||.+.+||++.
T Consensus 191 ~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 191 REGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred CCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHhh
Confidence 2578999999865 578889999999999999865
No 339
>PLN02979 glycolate oxidase
Probab=95.41 E-value=0.17 Score=45.08 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-C-----------------CCC-------
Q psy16780 55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-R-----------------QLD------- 100 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~-----------------~~~------- 100 (202)
-+++|.+..+.|.+.++- .+.+.++++.++|+++++++-. .| | ...
T Consensus 111 slEeIa~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~ 190 (366)
T PLN02979 111 SVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKM 190 (366)
T ss_pred CHHHHHhccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCC
Confidence 344444444567777764 2456678899999999988521 11 1 000
Q ss_pred ----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 101 ----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 101 ----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
....+|+.+..+++.- ++|||. .||.+.+|+.++..+|+|+|.++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 191 DEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0123566777776654 799988 568899999999999999998875
No 340
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.38 E-value=0.083 Score=46.70 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=56.2
Q ss_pred HHHHHHHHHh---cCCCEEEEe-c---------------cCH----HHHHHHHH--cCCcEEEeeccCc----CCCCCc-
Q psy16780 53 WSDVTWLKTI---TKLPIVLKG-I---------------LTA----EDAKIGVE--MGASAIMVSNHGG----RQLDYV- 102 (202)
Q Consensus 53 ~~~i~~i~~~---~~~Pv~vK~-~---------------~~~----~~a~~l~~--aG~d~I~v~~~gg----~~~~~~- 102 (202)
.+.++++.+. .++|+++=. + ..+ +.++.+.+ .|+|.+.+--.+. ...+.+
T Consensus 142 ~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~ 221 (340)
T PRK12858 142 HAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFE 221 (340)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccc
Confidence 3356666554 489998842 1 012 23566674 9999999843211 001110
Q ss_pred -c-ch---HHHHHHHHHHhCCCcEEEE-ecCCCCHHHHHHH----HHhCC--CEEEEcHHHHHH
Q psy16780 103 -P-AS---IEALPEIAKAVGHKVDVYL-DGGVRYGTDVFKA----LALGA--KMVFVGRPALWG 154 (202)
Q Consensus 103 -~-~~---~~~l~~i~~~~~~~ipiia-~GGI~~~~D~~ka----l~~GA--d~V~ig~~~l~~ 154 (202)
. .. .+.+.++.+.. .+|+|. +||+ +.+++.+. +..|| ++|.+||.....
T Consensus 222 ~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~ 282 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQD 282 (340)
T ss_pred ccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhh
Confidence 0 11 12344544443 577666 7787 66666554 45799 999999987653
No 341
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.33 E-value=0.73 Score=39.76 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=72.9
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCcc--chHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVP--ASIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
+|++|+... +.|+|.+-++-+.-...+.+. -+++.|.++++.+ ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus 154 ~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 154 DPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 578887765 699999988753222222233 3677899998888 799999886544 4667789999999999999
Q ss_pred HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.+..+.. ... ..-.....+.+++.++..|..+|..
T Consensus 232 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 232 ELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654311 011 1223344456677777777777754
No 342
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.30 E-value=0.18 Score=41.58 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCEEEEecc--CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 55 DVTWLKTITKLPIVLKGIL--TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~--~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
+..++++.-=+||+..... ....++.+++.|++.|.+.-+. +...+.++.+++.++ =-+|+.|=|-+++
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s-------p~a~e~I~~l~~~~p--~~lIGAGTVL~~~ 76 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRT-------PAALEAIRALAKEFP--EALIGAGTVLNPE 76 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCC-------CCHHHHHHHHHHhCc--ccEEccccccCHH
Confidence 4444444323565544331 2345688999999999996542 346678888888764 3489999999999
Q ss_pred HHHHHHHhCCCEEEE
Q psy16780 133 DVFKALALGAKMVFV 147 (202)
Q Consensus 133 D~~kal~~GAd~V~i 147 (202)
++.++.++||+++.-
T Consensus 77 q~~~a~~aGa~fiVs 91 (211)
T COG0800 77 QARQAIAAGAQFIVS 91 (211)
T ss_pred HHHHHHHcCCCEEEC
Confidence 999999999998863
No 343
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.28 E-value=0.72 Score=39.89 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=74.7
Q ss_pred CHHHHHHHHH-cCCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig 148 (202)
+|++++...+ .|+|.+-++-+.-...+ ..+ -+++.|.++++.+ ++|++.-||=..+ +++.+++..|..=|=++
T Consensus 159 ~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 159 DPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred CHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 5788888774 79999998753211122 122 3677899998888 8999999987776 57888999999999999
Q ss_pred HHHHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 149 RPALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 149 ~~~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
|.+..+. . ... ..-.....+.+++.++..|..+|..
T Consensus 237 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 237 TELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9765431 1 011 1223344556677777777777754
No 344
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.27 E-value=0.81 Score=39.49 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=71.7
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
+|++|+... +.|+|.+-++.+.-...+.+.| +++.|.++++.+ ++|++.-||=.. .+++.+++.+|..=|-++|
T Consensus 156 ~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 156 NPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 678887766 5999999987532122222333 667799998887 799999886544 4667789999999999999
Q ss_pred HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.+-.+.. .+. ..-.....+.+++.++..|..+|..
T Consensus 234 ~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 234 ELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7653211 011 1113334455666677777777653
No 345
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.22 E-value=0.84 Score=39.25 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=71.7
Q ss_pred CHHHHHHHHH-cCCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~ig 148 (202)
+|++++...+ .|+|.+-++-+.-...+ ++. -+++.|.++.+.+ ++|++.-||=..+ +++.+++..|..=|-++
T Consensus 149 ~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 149 DPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 5888887765 79999998753211122 113 3677899999888 8999999987766 55888999999999999
Q ss_pred HHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCC
Q psy16780 149 RPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGC 183 (202)
Q Consensus 149 ~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~ 183 (202)
+.+..+.. ... ..-.....+.+.+.++..|..+|.
T Consensus 227 T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 227 TDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 97654311 010 011233344566666666666664
No 346
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.01 E-value=0.03 Score=44.90 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHhhhccCcccc----HHHHHHHHHhcCCCEEEEec-c---CHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780 41 AYITSQLDETIN----WSDVTWLKTITKLPIVLKGI-L---TAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE 111 (202)
Q Consensus 41 ~~~~~~~d~~~~----~~~i~~i~~~~~~Pv~vK~~-~---~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~ 111 (202)
+++...+.++.. ...++..++ .++..+-+.- . +.+. .+.+.+...|+|.+ -+| .-...+.+
T Consensus 65 ~~L~~~~~~dGIISTk~~~i~~Ak~-~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEi--lPg-------~~p~vi~~ 134 (175)
T PF04309_consen 65 EYLKEYGKPDGIISTKSNLIKRAKK-LGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEI--LPG-------VMPKVIKK 134 (175)
T ss_dssp HHHHHTT--SEEEESSHHHHHHHHH-TT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEE--ESC-------CHHHHHCC
T ss_pred HHHHHcCCCcEEEeCCHHHHHHHHH-cCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEE--chH-------HHHHHHHH
Confidence 566666666662 346666654 4777776654 2 2333 45667888999988 222 01223444
Q ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 112 i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
+++.+ ++|+|+.|=|++.+|+.+++.+||++|.-+++-+|
T Consensus 135 i~~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 135 IREET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCCCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 43333 69999999999999999999999999998876553
No 347
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.98 E-value=0.92 Score=39.20 Aligned_cols=110 Identities=19% Similarity=0.242 Sum_probs=73.7
Q ss_pred CHHHHHHH-HHcCCcEEEeeccCcCCCCCc--cc--hHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHhCCCEEEE
Q psy16780 74 TAEDAKIG-VEMGASAIMVSNHGGRQLDYV--PA--SIEALPEIAKAVGHKVDVYLDGGVRYG-TDVFKALALGAKMVFV 147 (202)
Q Consensus 74 ~~~~a~~l-~~aG~d~I~v~~~gg~~~~~~--~~--~~~~l~~i~~~~~~~ipiia~GGI~~~-~D~~kal~~GAd~V~i 147 (202)
+|++|+.. .+.|+|.+-++-+.-.....+ .| +++.|.++++.++ ++|++.-||=..+ +++.+++.+|..=|=+
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEE
Confidence 57888776 589999999875322222223 34 5667899988764 6999999986655 4888999999999999
Q ss_pred cHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 148 GRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 148 g~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+|.+..+.. .+. .+-.....+.+++.++..|..+|..
T Consensus 235 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 235 GTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 997664321 111 1223444566777778888888764
No 348
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.97 E-value=0.35 Score=42.33 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC--cC-CCCCccc---hHHHHHHHHHHhCCCcEEE
Q psy16780 55 DVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG--GR-QLDYVPA---SIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g--g~-~~~~~~~---~~~~l~~i~~~~~~~ipii 123 (202)
.++..++..+.||++-+. .+. +.++.+.++|+|+|.+.-+. .+ ...+... ..+.+..+++.+ ++||+
T Consensus 90 ~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~ 167 (325)
T cd04739 90 LIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVA 167 (325)
T ss_pred HHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEE
Confidence 444455555889988764 333 44677788999999985431 11 1111111 123445555544 68988
Q ss_pred E--ecCCCCHHHHHHHH-HhCCCEEEEcHH
Q psy16780 124 L--DGGVRYGTDVFKAL-ALGAKMVFVGRP 150 (202)
Q Consensus 124 a--~GGI~~~~D~~kal-~~GAd~V~ig~~ 150 (202)
+ +..+.+..++++++ +.|||++.+.-.
T Consensus 168 vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 168 VKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred EEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 8 55566677777765 479999887554
No 349
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=94.96 E-value=0.27 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC-----------------CC-------
Q psy16780 55 DVTWLKTITKLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ-----------------LD------- 100 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~-----------------~~------- 100 (202)
-+++|.+..+-|.+..+- .+.+.++++.++|+.+++++-. .| |. ..
T Consensus 112 slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 191 (367)
T PLN02493 112 SVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKM 191 (367)
T ss_pred CHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCC
Confidence 344444444557777653 2456678899999999988531 11 10 00
Q ss_pred ----------------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 101 ----------------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 101 ----------------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
....+|+.+..+++.- ++|||. .||.+.+|+.+++.+|+|+|.++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 192 DEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 0123566677776654 799988 568899999999999999999864
No 350
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.90 E-value=1.2 Score=38.38 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=72.2
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCccc--hHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYVPA--SIEALPEIAKAVGHKVDVYLDGGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipiia~GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
+|++++... +.|+|.+-++-+.-...+.+.| +++.|.++++.+ ++|++.-||=.. .+++.+++..|..=|-++|
T Consensus 156 ~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 156 DPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred CHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 578888775 6799999887532222222333 667889998887 799999887544 4667789999999999999
Q ss_pred HHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 150 PALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 150 ~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
-+..+.. ... ..-.....+.+++..+..|..+|..
T Consensus 234 ~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 234 NIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7654311 000 1123344455667777777777653
No 351
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.90 E-value=0.55 Score=40.11 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCC-cc--chHHHHHHHHHHhCCCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDY-VP--ASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~-~~--~~~~~l~~i~~~~~~~ipii 123 (202)
.+.++++ ..++.||++|-. .+.++. +.+...|-.-+.+.-.|++.... .. .++..+..+++.. ..||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4567777 456899999965 355553 45566787666665555433221 11 2334455555444 68999
Q ss_pred Ee-cCCCC-----HHHHHHHHHhCCCEEEEcHHHH
Q psy16780 124 LD-GGVRY-----GTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 124 a~-GGI~~-----~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+ +--.. ...+..++++||+++++=+.+-
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 93 43223 5667788889999999987544
No 352
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.74 E-value=0.35 Score=41.05 Aligned_cols=72 Identities=25% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.|+...++||+++.+-.... .. ..+.+.+..+++.+ ++||+.--=|.++.++..+..+|||+|.+.-..+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~--~f--~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER--FF--QGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc--cC--CCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 4678889999999998854211 11 12356777777776 8999987778899999999999999999876554
No 353
>PLN02591 tryptophan synthase
Probab=94.63 E-value=0.069 Score=45.21 Aligned_cols=45 Identities=27% Similarity=0.205 Sum_probs=38.5
Q ss_pred ccccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
+....+.++.+|+.+++||.++. +.++++++.+.+.|+|+++|+.
T Consensus 174 ~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 174 SGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred chhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 44456689999999999999985 4679999999999999999965
No 354
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.57 E-value=0.56 Score=41.53 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=62.0
Q ss_pred HHHHHHhc--CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---CcC---------CC-------C--------
Q psy16780 56 VTWLKTIT--KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GGR---------QL-------D-------- 100 (202)
Q Consensus 56 i~~i~~~~--~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg~---------~~-------~-------- 100 (202)
+++|.+.. +.|.++-+- .+.+..+++.++|+++++++-. .|+ +. .
T Consensus 107 ~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~ 186 (344)
T cd02922 107 LEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGG 186 (344)
T ss_pred HHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccc
Confidence 34444442 367766432 2356678899999999998642 111 00 0
Q ss_pred ----------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 101 ----------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 101 ----------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
....+++.+.++++.. ++|||.- ||.+.+|+.++...|+|++.+.-
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 187 GAGRAMSGFIDPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred hHHHHHhhccCCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0124566777777766 7899987 68999999999999999998864
No 355
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=94.55 E-value=0.23 Score=43.95 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=60.7
Q ss_pred HHHHHHHHHh---cCCCEEEEec------cC-------HH----HHHHHHHcCCcEEEeeccCc--C--CC---------
Q psy16780 53 WSDVTWLKTI---TKLPIVLKGI------LT-------AE----DAKIGVEMGASAIMVSNHGG--R--QL--------- 99 (202)
Q Consensus 53 ~~~i~~i~~~---~~~Pv~vK~~------~~-------~~----~a~~l~~aG~d~I~v~~~gg--~--~~--------- 99 (202)
++.+.++.++ +++|+++-.- .+ ++ .++.+.+.|||.|.+--.+. . ..
T Consensus 178 l~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~ 257 (348)
T PRK09250 178 IEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRV 257 (348)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccc
Confidence 4445555444 5899987321 11 22 25778999999999854321 0 00
Q ss_pred -C--CccchHHHHHHHHHHh-CCCcEEEEecCCCCH-HH----HHHH---HHhCCCEEEEcHHHHH
Q psy16780 100 -D--YVPASIEALPEIAKAV-GHKVDVYLDGGVRYG-TD----VFKA---LALGAKMVFVGRPALW 153 (202)
Q Consensus 100 -~--~~~~~~~~l~~i~~~~-~~~ipiia~GGI~~~-~D----~~ka---l~~GAd~V~ig~~~l~ 153 (202)
+ ......+.++.+.+.+ .+++||+.+||=... +| +..+ +..||.++.+||-...
T Consensus 258 ~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 258 YSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred cccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhc
Confidence 0 0112233445554443 347999999998843 33 3456 6789999999997653
No 356
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.21 Score=42.54 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=53.3
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC--HHHHH----HHHHhCCCEEEEcHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY--GTDVF----KALALGAKMVFVGRPA 151 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~--~~D~~----kal~~GAd~V~ig~~~ 151 (202)
++.+.+.|+|.|.+.-.+ +.+.++++.+.. .+||+.+||=++ ..++. .++..||.++.+||-+
T Consensus 172 aRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 172 ARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred HHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 467889999999874322 235667776666 499999999877 23333 4556799999999977
Q ss_pred HHHhhhcChHHHHHHHHHH
Q psy16780 152 LWGLAHSGKSGVRKVLDIL 170 (202)
Q Consensus 152 l~~~~~~G~~~v~~~i~~l 170 (202)
.. ..-++++.+.|..+
T Consensus 241 fQ---~~~p~~m~~Ai~~I 256 (265)
T COG1830 241 FQ---HEDPEAMVKAIQAI 256 (265)
T ss_pred hc---cCChHHHHHHHHHH
Confidence 63 23455444444443
No 357
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.45 E-value=0.86 Score=38.76 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCEEEEec-c-CHHHH----HHHHHcCCcEEEeeccCcCCCCC---ccchHHHHHHHHHHhCCCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-L-TAEDA----KIGVEMGASAIMVSNHGGRQLDY---VPASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~-~~~~a----~~l~~aG~d~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipii 123 (202)
.+.++++. .++.||++|-. . ++++. +.+.+.|.+-|.+.-.|-+.... ...++..+..+++.. .+||+
T Consensus 122 ~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~ 198 (260)
T TIGR01361 122 FELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPII 198 (260)
T ss_pred HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEE
Confidence 45666665 45899999965 3 56554 45567888766664332222211 134666777777655 69999
Q ss_pred E----ecCCCC--HHHHHHHHHhCCCEEEEcHHHH
Q psy16780 124 L----DGGVRY--GTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 124 a----~GGI~~--~~D~~kal~~GAd~V~ig~~~l 152 (202)
. ++|.|. ..-...|+++||+++++=+.|-
T Consensus 199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 199 VDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred EcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9 334322 3445577889999998877554
No 358
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=94.42 E-value=0.69 Score=41.02 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=64.4
Q ss_pred CccccHHHHHHHHHhc-CCCEEEEec------cCHHHH-HHHHHcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780 48 DETINWSDVTWLKTIT-KLPIVLKGI------LTAEDA-KIGVEMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA 113 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~-~~Pv~vK~~------~~~~~a-~~l~~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~ 113 (202)
+|+ ..+.++.+|+.. +.|+++=+. .+++.+ +.....++|++.++-..... ...+..++ +.+.+++
T Consensus 104 ~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~ 182 (352)
T PRK05437 104 DPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIV 182 (352)
T ss_pred Chh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHH
Confidence 555 556788888877 889887432 235554 44556789999886432211 11222233 3456666
Q ss_pred HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.+ ++||+. +|.-.+.+++.++..+|+|++.++.
T Consensus 183 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 183 SAL--PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred Hhh--CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 666 799997 5655778888888889999999854
No 359
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=94.23 E-value=1.3 Score=37.46 Aligned_cols=89 Identities=12% Similarity=-0.000 Sum_probs=54.3
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeecc-----CcCCC-CC-----ccchHHHHHHHHHHh---CCCcEEEEecCCC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNH-----GGRQL-DY-----VPASIEALPEIAKAV---GHKVDVYLDGGVR 129 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~-----gg~~~-~~-----~~~~~~~l~~i~~~~---~~~ipiia~GGI~ 129 (202)
++++-+=.+++++.+..+.++|+++|...-+ +.... +. +.+....+.++.+.+ ..+..|++. .++
T Consensus 139 GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~A-S~r 217 (252)
T cd00439 139 GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWA-SFS 217 (252)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEE-eeC
Confidence 4555555556778888888899888876321 11110 00 013333344443332 335667664 489
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780 130 YGTDVFKALALGAKMVFVGRPALWGL 155 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ig~~~l~~~ 155 (202)
+..++.+++ |+|.|-+.-..+..+
T Consensus 218 ~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 218 DTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CHHHHHHhh--CCCeeecCHHHHHHH
Confidence 999998766 999999988777654
No 360
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.20 E-value=0.095 Score=44.70 Aligned_cols=42 Identities=21% Similarity=0.132 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++.+|+.++.|+.+..- .++++++.+.+.|+|+++++.
T Consensus 190 ~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 190 LKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 566899999999999999854 679999999999999999965
No 361
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.19 E-value=0.34 Score=40.75 Aligned_cols=82 Identities=24% Similarity=0.248 Sum_probs=58.9
Q ss_pred HHH-HHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 78 AKI-GVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 78 a~~-l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
++. +...++|+|+++|.. .+.+++.+.|..+++.. ++|+++..|+ +.+.+.+.+.. ||++.+|+.|=.
T Consensus 169 v~dtver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~--- 237 (263)
T COG0434 169 VKDTVERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKK--- 237 (263)
T ss_pred HHHHHHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEcc---
Confidence 444 566789999998841 23467888888887777 5999998885 67778888777 999999997753
Q ss_pred hcC-------hHHHHHHHHHHH
Q psy16780 157 HSG-------KSGVRKVLDILI 171 (202)
Q Consensus 157 ~~G-------~~~v~~~i~~l~ 171 (202)
+| .+.+.++++..+
T Consensus 238 -~G~~~n~VD~~Rv~~~v~~a~ 258 (263)
T COG0434 238 -GGVTWNPVDLERVRRFVEAAR 258 (263)
T ss_pred -CCEecCccCHHHHHHHHHHHH
Confidence 33 355655555443
No 362
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=94.11 E-value=2.8 Score=35.29 Aligned_cols=83 Identities=22% Similarity=0.234 Sum_probs=53.0
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHH---HHHHHHHhCCC-cEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA---LPEIAKAVGHK-VDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~---l~~i~~~~~~~-ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
++..++..+.++|++.|.. .-||-.|++...... +.++.+..+.. ..+++. +++++.++..+..+|||.+-+.
T Consensus 124 FS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~va-s~~~~~~~~~~~l~G~d~~Tip 200 (239)
T COG0176 124 FSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVA-SARFPNHVYIAALAGADVLTIP 200 (239)
T ss_pred ecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEe-cCccHHHHHHHHHhCCCcccCC
Confidence 4555566667777666654 334544444333333 34444443333 455554 5899999999999999999999
Q ss_pred HHHHHHhhhc
Q psy16780 149 RPALWGLAHS 158 (202)
Q Consensus 149 ~~~l~~~~~~ 158 (202)
-..+..+...
T Consensus 201 ~~~l~~l~~~ 210 (239)
T COG0176 201 PDLLKQLLKH 210 (239)
T ss_pred HHHHHHHHhc
Confidence 8888765544
No 363
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=94.11 E-value=0.63 Score=38.19 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=45.7
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe-----cCC-CCH-------HHHHHHHH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD-----GGV-RYG-------TDVFKALA 139 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~-----GGI-~~~-------~D~~kal~ 139 (202)
.+++++..+.+.|||.|.+..+- ...+-.|+...++.+++.. ++||... |+. .|. +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999987631 1112246777788887766 7888773 333 233 35566667
Q ss_pred hCCCEEEEcH
Q psy16780 140 LGAKMVFVGR 149 (202)
Q Consensus 140 ~GAd~V~ig~ 149 (202)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 8999999996
No 364
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.08 E-value=0.72 Score=41.50 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+|+.+..+++.. ++|||.- ||.+.+|+.+++.+|+|+|.++-
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 566777777765 7898885 79999999999999999999863
No 365
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.08 E-value=1.2 Score=35.82 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=56.2
Q ss_pred cHHHHHHHHHhc-CCCEEEEe-ccCHH--HHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEe-
Q psy16780 52 NWSDVTWLKTIT-KLPIVLKG-ILTAE--DAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLD- 125 (202)
Q Consensus 52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~--~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~- 125 (202)
..+.|+.+++.. +.++++-. ..++. +++.+.++|+|+|.++... ...+.. .+..+ +.. .++++..
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~-~~~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAA-KKH--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHH-HHc--CCEEEEEe
Confidence 466889998875 45555433 23443 6899999999999985421 111222 33333 333 5777764
Q ss_pred cCCCC-HHHHHHHHHhCCCEEEEcH
Q psy16780 126 GGVRY-GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 126 GGI~~-~~D~~kal~~GAd~V~ig~ 149 (202)
-+..+ .+++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 34444 4777778888999998853
No 366
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.08 E-value=0.51 Score=40.81 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=63.9
Q ss_pred CccccHHHHHHHHHhcC-CCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 48 DETINWSDVTWLKTITK-LPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~-~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
+++...+.++.+|+.++ +++.++.. .+.++ ++.+.+.|++.+.= .. .+.+++.++++++.. ++
T Consensus 160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe------P~--~~~d~~~~~~L~~~~--~i 229 (316)
T cd03319 160 DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ------PV--PAGDDDGLAYLRDKS--PL 229 (316)
T ss_pred ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC------CC--CCCCHHHHHHHHhcC--CC
Confidence 44455678888888764 66777654 34444 34556667766631 00 123566777887765 79
Q ss_pred EEEEecCCCCHHHHHHHHHh-CCCEEEEcHH
Q psy16780 121 DVYLDGGVRYGTDVFKALAL-GAKMVFVGRP 150 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~-GAd~V~ig~~ 150 (202)
||++++.+.+..++.+++.. ++|.|++--.
T Consensus 230 pIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 230 PIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 99999999999999999996 5899887643
No 367
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=94.06 E-value=0.58 Score=38.91 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH--HHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR--PAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~--~~l 152 (202)
..++.+...|+++|++.. +.+.++.+++.. ++||+.|+ -.++....+.++|||.|-+|- .|+
T Consensus 31 ~i~~AA~~ggAt~vDIAa-----------dp~LV~~~~~~s--~lPICVSa--Vep~~f~~aV~AGAdliEIGNfDsFY 94 (242)
T PF04481_consen 31 AIVKAAEIGGATFVDIAA-----------DPELVKLAKSLS--NLPICVSA--VEPELFVAAVKAGADLIEIGNFDSFY 94 (242)
T ss_pred HHHHHHHccCCceEEecC-----------CHHHHHHHHHhC--CCCeEeec--CCHHHHHHHHHhCCCEEEecchHHHH
Confidence 345777889999999954 345555554433 89999988 589999999999999999998 455
No 368
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.02 E-value=0.14 Score=42.56 Aligned_cols=43 Identities=30% Similarity=0.303 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHhc-CCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 51 INWSDVTWLKTIT-KLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 51 ~~~~~i~~i~~~~-~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
...+.++++++.+ +.|+++.+. .++++++.+.++|+|.|++++
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3577999999998 999999864 799999999999999999965
No 369
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.9 Score=38.78 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=75.7
Q ss_pred HHHHHHHHhc---CCCEEEEec------cCH------------HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH
Q psy16780 54 SDVTWLKTIT---KLPIVLKGI------LTA------------EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112 (202)
Q Consensus 54 ~~i~~i~~~~---~~Pv~vK~~------~~~------------~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i 112 (202)
..|+++-+.+ ++|.++-.. .+. +.++.+.+.|+|-+.|---. .......+++..+
T Consensus 147 a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv----yveGe~~ea~~~f 222 (306)
T COG3684 147 AYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV----YVEGEQEEAAAAF 222 (306)
T ss_pred HHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce----eccCccHHHHHHH
Confidence 3566666654 899998654 111 22355667899888774321 1101233333333
Q ss_pred HHHh-CCCcE-EEEecCCCC---HHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q psy16780 113 AKAV-GHKVD-VYLDGGVRY---GTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVG 187 (202)
Q Consensus 113 ~~~~-~~~ip-iia~GGI~~---~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~ 187 (202)
.+.- ..++| |+.|.||.. ...+.-|...||++|..||+.-.+....|.+ ..+.++.-.|..+|+
T Consensus 223 ~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~v~~g~d-----------~~re~Lrt~g~~ni~ 291 (306)
T COG3684 223 QRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAGVVEQGED-----------AAREWLRTVGFPNLD 291 (306)
T ss_pred HHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhcccccCcH-----------HHHHHHHhhccccHH
Confidence 2211 12677 556889965 5667777889999999999876543334554 345667778888888
Q ss_pred hhhhc
Q psy16780 188 EIQRE 192 (202)
Q Consensus 188 el~~~ 192 (202)
+|.+.
T Consensus 292 eL~~v 296 (306)
T COG3684 292 ELNKV 296 (306)
T ss_pred HHHHH
Confidence 88754
No 370
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.97 E-value=0.48 Score=40.48 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchH-HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH----HhCCCEEEEcHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL----ALGAKMVFVGRP 150 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal----~~GAd~V~ig~~ 150 (202)
+.++.+.+.|+|+|.+.|+.|....-..... +.+..+++.. +++ +.+.|+. +..|+.+.. .+|||++++..|
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~v-i~gvg~~-~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DKV-IFQVGSL-NLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CCE-EEEeCcC-CHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4467788999999999887553221111122 2344455554 332 4445553 344444332 379999999999
Q ss_pred HHHHhhhcChHHHHHHHHHHHH
Q psy16780 151 ALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 151 ~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
+++. .-..+++.+++..+.+
T Consensus 101 ~y~~--~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 101 YYFP--GIPEEWLIKYFTDISS 120 (279)
T ss_pred cCCC--CCCHHHHHHHHHHHHh
Confidence 8752 1135666666666655
No 371
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=93.93 E-value=1.7 Score=36.47 Aligned_cols=135 Identities=18% Similarity=0.149 Sum_probs=74.8
Q ss_pred HHHHHHHHhc--CCCEEEEec---cCHHH----HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh---CCCcE
Q psy16780 54 SDVTWLKTIT--KLPIVLKGI---LTAED----AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV---GHKVD 121 (202)
Q Consensus 54 ~~i~~i~~~~--~~Pv~vK~~---~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ip 121 (202)
.+|++|++.+ +.|+...+- ..+.. +..+...|+|+|.++-.+.... ....+.+..+.+.+ ..+..
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~---~~a~e~l~~v~~av~~~~~~~~ 116 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY---DEAIEALEAVVRAVKDFDPDKK 116 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH---HHHHHHHHHHHHHHhhhCCCcE
Confidence 3666777666 478887653 23333 3344568999999976543221 11233343333332 33566
Q ss_pred EEEecC--C-----CCHHHHHHHHH-hCCCEEEEcHHHHHH---hhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhh
Q psy16780 122 VYLDGG--V-----RYGTDVFKALA-LGAKMVFVGRPALWG---LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190 (202)
Q Consensus 122 iia~GG--I-----~~~~D~~kal~-~GAd~V~ig~~~l~~---~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~ 190 (202)
+++++= - -++.++.+..+ +|++++|+-|..=-+ ..+-..+.+.+|++.- +..-....+.|.-+.+++.
T Consensus 117 vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~a-r~~gL~~aLAGSL~~~di~ 195 (235)
T PF04476_consen 117 VVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQA-RAHGLMCALAGSLRFEDIP 195 (235)
T ss_pred EEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHH-HHccchhhccccCChhHHH
Confidence 777652 1 24567776654 799999998742100 0012345566665543 3444556666766666655
Q ss_pred hc
Q psy16780 191 RE 192 (202)
Q Consensus 191 ~~ 192 (202)
.-
T Consensus 196 ~L 197 (235)
T PF04476_consen 196 RL 197 (235)
T ss_pred HH
Confidence 43
No 372
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=93.92 E-value=0.96 Score=39.63 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=62.5
Q ss_pred CccccHHHHHHHHHhcC-CCEEEEec------cCHHHHHHHH-HcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780 48 DETINWSDVTWLKTITK-LPIVLKGI------LTAEDAKIGV-EMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA 113 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~-~Pv~vK~~------~~~~~a~~l~-~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~ 113 (202)
+|+ .++.++.+|+..+ .|+++-.. .+.+.+..+. ..++|++.++-..... ...+..++ +.+..++
T Consensus 96 ~~e-~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~ 174 (326)
T cd02811 96 DPE-LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELV 174 (326)
T ss_pred Chh-hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHH
Confidence 444 3467778887775 88876542 1566665544 4789999885422111 11122233 3456666
Q ss_pred HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.+ ++||+. +|--.+.+++.++..+|+|++.++.
T Consensus 175 ~~~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 175 KAL--SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred Hhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 655 799998 4444678888878889999999754
No 373
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=93.89 E-value=0.4 Score=40.75 Aligned_cols=71 Identities=31% Similarity=0.290 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.++...++||++|.|-.-. .+ -..+.+.|..+++.+ ++|+..--=|-++.++.++..+|||+|.+=..++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~--~~--F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP--KF--FGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S--CC--CHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC--CC--CCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 66788899999999985421 11 123567778887777 8999999999999999999999999998766554
No 374
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.87 E-value=1.9 Score=38.24 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=74.1
Q ss_pred cCHHHHHHHH-HcCCcEEEeeccCcCCCCCc---c----chHHHHHHHHHHhCCCcEEEEecCCCCH-------------
Q psy16780 73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYV---P----ASIEALPEIAKAVGHKVDVYLDGGVRYG------------- 131 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipiia~GGI~~~------------- 131 (202)
.+|++|+... +.|+|.+-++-+.-...+.+ | -+++.|.++++.+ +++|++.-||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 3678887776 57999998865321112111 2 3566788888776 35999999975544
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHh----h---hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 132 ---------TDVFKALALGAKMVFVGRPALWGL----A---HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 132 ---------~D~~kal~~GAd~V~ig~~~l~~~----~---~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
+++.+++.+|..=|-++|-+-.+. . ... ..-.....+.+++-.+..|..+|..
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 324 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTA 324 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 889999999999999999655431 1 111 1223444566777788888888854
No 375
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.85 E-value=1 Score=36.87 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=31.0
Q ss_pred hccCccccHHHHHHHHHhcCCCEEEEecc-------C-------HHHHHHHHHcCCcEEEeec
Q psy16780 45 SQLDETINWSDVTWLKTITKLPIVLKGIL-------T-------AEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~~~~Pv~vK~~~-------~-------~~~a~~l~~aG~d~I~v~~ 93 (202)
+.|-...+...++.+++..++||.+=++. + .++++.+.++|+|+++++-
T Consensus 31 ~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~ 93 (201)
T PF03932_consen 31 EVGGLTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGA 93 (201)
T ss_dssp GGT-B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--
T ss_pred cCCCcCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEe
Confidence 44445556688999999999998875541 2 2557889999999999863
No 376
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=93.83 E-value=0.87 Score=39.14 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCC-CCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipiia~ 125 (202)
++.++++.+ ++.||.+|-. .++++ ++.+.+.|-..|.+.-+|-+- ...-..+...++.+++.. ...|||.+
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 456666654 5899999965 66655 677788999999998776441 111233555666665532 36899984
Q ss_pred ---------------cCCCCH--HHHHHHHHhCCCEEEEcH
Q psy16780 126 ---------------GGVRYG--TDVFKALALGAKMVFVGR 149 (202)
Q Consensus 126 ---------------GGI~~~--~D~~kal~~GAd~V~ig~ 149 (202)
||-|.. .=+..++++|||++++=.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 555542 223456678999999865
No 377
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.82 E-value=0.26 Score=39.34 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=64.2
Q ss_pred HHhhhccCcccc----HHHHHHHHHhcCCCEEEEec-c---CHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHH
Q psy16780 41 AYITSQLDETIN----WSDVTWLKTITKLPIVLKGI-L---TAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE 111 (202)
Q Consensus 41 ~~~~~~~d~~~~----~~~i~~i~~~~~~Pv~vK~~-~---~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~ 111 (202)
+++-.+..|+.. -..++.-++ .+.+.+-+.- . ..+- ...+.+.++|+|.+ -+| --...+.+
T Consensus 69 ~fi~~~~~pdGIISTk~~~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv--LPG-------v~Pkvi~~ 138 (181)
T COG1954 69 EFIKEVIKPDGIISTKSNVIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV--LPG-------VMPKVIKE 138 (181)
T ss_pred HHHHHhccCCeeEEccHHHHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE--cCc-------ccHHHHHH
Confidence 455555555552 224444443 3667666643 2 2232 35566789999988 222 13456677
Q ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 112 i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.+.. .+|||+-|=|++-+|+..|+.+||-+|.-..
T Consensus 139 i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 139 ITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred HHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 77666 8999999999999999999999998887543
No 378
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.80 E-value=1 Score=40.09 Aligned_cols=96 Identities=23% Similarity=0.254 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCC---CccchHHHHHHHHHHhCCCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLD---YVPASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipii 123 (202)
++.++++.+ ++.||++|-. .+.++. +.+.+.|.+-|++.-+|-+... ....++..+..+++.. .+||+
T Consensus 215 ~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~ 291 (360)
T PRK12595 215 FELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVM 291 (360)
T ss_pred HHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEE
Confidence 456777764 5899999965 366664 4556688866666533322221 1123667788887765 69999
Q ss_pred Eec----CCCCHH--HHHHHHHhCCCEEEEcHHH
Q psy16780 124 LDG----GVRYGT--DVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 124 a~G----GI~~~~--D~~kal~~GAd~V~ig~~~ 151 (202)
.+. |-+... -...|+++|||++++=+.|
T Consensus 292 ~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 292 VDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred EeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 943 222222 3445778999999998866
No 379
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.69 E-value=0.75 Score=40.01 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEecc---C-HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcE
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGIL---T-AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVD 121 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~~---~-~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 121 (202)
...|+...+.|+++|+.++.|+-+-... . .+.++.+.+.|++.|.++. | .|. ..+.++++. .+.
T Consensus 44 ~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~--g------~p~-~~i~~lk~~---g~~ 111 (307)
T TIGR03151 44 NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA--G------NPG-KYIPRLKEN---GVK 111 (307)
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC--C------CcH-HHHHHHHHc---CCE
Confidence 3456667778999999889998887652 2 3445778899999988742 2 122 345555432 467
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 122 VYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 122 iia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
|++ -+.+.+++.++..+|||.+.+
T Consensus 112 v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 765 568899999999999999987
No 380
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.69 E-value=1.3 Score=39.08 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCC-c--cchHHHHHHHHHHhCCCcEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDY-V--PASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~-~--~~~~~~l~~i~~~~~~~ipii 123 (202)
.+.++++. .++.||++|-. .+.++ ++.+...|-+-+.+.-.|.+.... . ..++..+..+++.. ..|||
T Consensus 190 ~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 44555555 35899999965 35555 355667888777776555444422 1 22445566666555 69998
Q ss_pred Eec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHh-hhcChHHH-HHHHHHHHHHHHHHHHHhC
Q psy16780 124 LDG----GVRY--GTDVFKALALGAKMVFVGRPALWGL-AHSGKSGV-RKVLDILINEFDQALALSG 182 (202)
Q Consensus 124 a~G----GI~~--~~D~~kal~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~i~~l~~~L~~~m~~~G 182 (202)
++- |.+. +.-...|+++|||++++=..+--.- .+.|+..+ -+-++.+.++++..-...|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 843 3322 2445677889999999877543210 12332211 1334556666666555554
No 381
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.65 E-value=0.42 Score=39.52 Aligned_cols=78 Identities=17% Similarity=0.264 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV 134 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~ 134 (202)
.+..+.+..++|++|- +..+.+.+.|+|+|+++.. + ..+...++.+++.. +|+. .+++.+++
T Consensus 56 ~~~~lc~~~~v~liIN-----d~~dlA~~~~AdGVHlGq~----------D-~~~~~ar~~~~~~~-iIG~-S~h~~eea 117 (211)
T COG0352 56 KLRALCQKYGVPLIIN-----DRVDLALAVGADGVHLGQD----------D-MPLAEARELLGPGL-IIGL-STHDLEEA 117 (211)
T ss_pred HHHHHHHHhCCeEEec-----CcHHHHHhCCCCEEEcCCc----------c-cchHHHHHhcCCCC-EEEe-ecCCHHHH
Confidence 4555666678999985 3345566899999988431 0 11233344443222 4443 46799999
Q ss_pred HHHHHhCCCEEEEcHH
Q psy16780 135 FKALALGAKMVFVGRP 150 (202)
Q Consensus 135 ~kal~~GAd~V~ig~~ 150 (202)
.++..+|||.|++|.-
T Consensus 118 ~~A~~~g~DYv~~Gpi 133 (211)
T COG0352 118 LEAEELGADYVGLGPI 133 (211)
T ss_pred HHHHhcCCCEEEECCc
Confidence 9999999999999973
No 382
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=93.64 E-value=1 Score=40.23 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=62.6
Q ss_pred HHHHHHHhc-CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC-------------------------
Q psy16780 55 DVTWLKTIT-KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ------------------------- 98 (202)
Q Consensus 55 ~i~~i~~~~-~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~------------------------- 98 (202)
-+++|.+.. +-|.+.-+- .+.+.++++.++|++++.++-. .| |.
T Consensus 122 slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~ 201 (367)
T TIGR02708 122 DLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAG 201 (367)
T ss_pred CHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCc
Confidence 445555542 456665432 3456688999999999988531 11 10
Q ss_pred --CC------CccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 99 --LD------YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 99 --~~------~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
.. ....+|+.+.++++.. ++||+.= ||.+.+|+.++..+|+|+|.++.
T Consensus 202 ~~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 202 KSMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred cchhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 00 0123567788887766 7999976 69999999999999999997764
No 383
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.60 E-value=1.3 Score=36.34 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=57.2
Q ss_pred ccccHHHHHHHHHhcCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi 122 (202)
++...+.++++++..+.|+.+.... ..+.++.+.++|+|+|.+... .....+..+++ . .+++
T Consensus 38 ~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---------~~~~~~~~~~~-~--~i~~ 105 (236)
T cd04730 38 PEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---------PPAEVVERLKA-A--GIKV 105 (236)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---------CCHHHHHHHHH-c--CCEE
Confidence 3444567788877665677666552 235678899999999998432 12233444432 2 5777
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 123 YLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 123 ia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
+. .+.+.+++.++...|+|.+.+
T Consensus 106 i~--~v~~~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 106 IP--TVTSVEEARKAEAAGADALVA 128 (236)
T ss_pred EE--eCCCHHHHHHHHHcCCCEEEE
Confidence 66 367888888888899999876
No 384
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.55 E-value=0.41 Score=39.24 Aligned_cols=42 Identities=24% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCEE--EEecc---CH-HHHHHHHHcCCcEEEeeccCc
Q psy16780 54 SDVTWLKTITKLPIV--LKGIL---TA-EDAKIGVEMGASAIMVSNHGG 96 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~--vK~~~---~~-~~a~~l~~aG~d~I~v~~~gg 96 (202)
+.++++++... |++ +|..- +. ..++.+.++|+|.++|+..+|
T Consensus 40 ~~v~~l~~~~~-~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g 87 (213)
T TIGR01740 40 KIIDELAKLNK-LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG 87 (213)
T ss_pred HHHHHHHHcCC-CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 68889988643 554 45432 22 335667899999999986544
No 385
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.51 E-value=0.18 Score=41.50 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEee
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVS 92 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~ 92 (202)
..+.++++++.++.|+++.+- .++++++.+.++|+|+|+++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 478999999999999999964 79999999999999999873
No 386
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=93.50 E-value=0.19 Score=41.83 Aligned_cols=42 Identities=29% Similarity=0.299 Sum_probs=37.5
Q ss_pred cHHHHHHHHHhc-CCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTIT-KLPIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~-~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++++++.+ +.|+++++ +.+.++++.+.++|+|.|++++
T Consensus 166 ~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 166 PPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred CHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 477999999998 99999986 4799999999999999999965
No 387
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.48 E-value=1.1 Score=38.63 Aligned_cols=86 Identities=23% Similarity=0.193 Sum_probs=50.7
Q ss_pred HHhcCCCEEEEec-cCH----HHHHHHHHcC-CcEEEeecc------CcCCCCCcc-chHHHHHHHHHHhCCCcEEEE--
Q psy16780 60 KTITKLPIVLKGI-LTA----EDAKIGVEMG-ASAIMVSNH------GGRQLDYVP-ASIEALPEIAKAVGHKVDVYL-- 124 (202)
Q Consensus 60 ~~~~~~Pv~vK~~-~~~----~~a~~l~~aG-~d~I~v~~~------gg~~~~~~~-~~~~~l~~i~~~~~~~ipiia-- 124 (202)
++..+.|+++=+. .++ +.++.+.++| +|+|.+.-+ ||..+...+ ...+.+..+++.+ ++||++
T Consensus 87 ~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl 164 (301)
T PRK07259 87 LEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKL 164 (301)
T ss_pred HhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 3345789988664 344 3367788899 999998431 121111111 1233455555555 688887
Q ss_pred ecCCCCHHHHHHHHH-hCCCEEEE
Q psy16780 125 DGGVRYGTDVFKALA-LGAKMVFV 147 (202)
Q Consensus 125 ~GGI~~~~D~~kal~-~GAd~V~i 147 (202)
+..+.+..++++.+. .|+|++.+
T Consensus 165 ~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 165 TPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEE
Confidence 333445556666554 79998765
No 388
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.46 E-value=1.2 Score=38.04 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC------cCCCCCccc-hHHHHHHHHHHhCCCcEE
Q psy16780 55 DVTWLKTITKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG------GRQLDYVPA-SIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g------g~~~~~~~~-~~~~l~~i~~~~~~~ipi 122 (202)
.+...++..+.|+++=+. .+. +.++.+.++|+|+|.+.-+- |..+...+. ..+.+..+++.+ ++||
T Consensus 80 ~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv 157 (296)
T cd04740 80 ELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPV 157 (296)
T ss_pred HHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCE
Confidence 344444445789988664 333 44677889999999985321 111111111 122344454444 6888
Q ss_pred EE--ecCCCCHHHHHHHH-HhCCCEEEE
Q psy16780 123 YL--DGGVRYGTDVFKAL-ALGAKMVFV 147 (202)
Q Consensus 123 ia--~GGI~~~~D~~kal-~~GAd~V~i 147 (202)
.. +....+..++++.+ ++|||++.+
T Consensus 158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 158 IVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 86 44444566666644 589998765
No 389
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=93.41 E-value=1.1 Score=39.24 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+=.+++.+.+..+.++|++.|... -||-.++ .-+....+.++.+.+ +.+.-|+ ...
T Consensus 148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm-aAS 224 (313)
T cd00957 148 GIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM-GAS 224 (313)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE-ecc
Confidence 44444444467788888889999887653 2322111 113344455554433 2244455 456
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 225 fRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 225 FRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred cCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 999999987 579999999988887654
No 390
>PTZ00411 transaldolase-like protein; Provisional
Probab=93.40 E-value=1.6 Score=38.57 Aligned_cols=88 Identities=18% Similarity=0.230 Sum_probs=56.4
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+=.+++...+..+.++|++.|... -||-.++ +.+....+.++.+.+ +.+. .|....
T Consensus 160 GI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T-~Im~AS 236 (333)
T PTZ00411 160 GIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT-IVMGAS 236 (333)
T ss_pred CCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe-EEEecc
Confidence 45555545567788888899999887753 2322111 223344555554433 2233 455567
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++.. .+|||.+-+.-.++..+.
T Consensus 237 fRn~~qi~~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 237 FRNTGEILE--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred cCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence 999999987 389999999988887654
No 391
>KOG2550|consensus
Probab=93.32 E-value=0.44 Score=43.11 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEE--EEcH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMV--FVGR 149 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V--~ig~ 149 (202)
+....+.++|+|.|+++...|.. .-.++.+..+++.+ ++.+||+ |.+-+.+.+...+++|||.. +||+
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVGMGs 323 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVGMGS 323 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEecccc
Confidence 44567889999999998765432 22445566666665 4788888 88999999999999999974 4444
No 392
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.31 E-value=0.94 Score=39.69 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=41.3
Q ss_pred CcE-EEEecCCCCH---HHHHHHHHhCC--CEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 119 KVD-VYLDGGVRYG---TDVFKALALGA--KMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 119 ~ip-iia~GGI~~~---~D~~kal~~GA--d~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+| |+.|+|+... +.+.-|..+|| ++|..||+.-+. ++..++..=....+.+|...|..+|++|+..
T Consensus 240 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~-------~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~v 312 (324)
T PRK12399 240 HLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLCGRATWAG-------SVKVYIEQGEAAAREWLRTEGFENIDELNKV 312 (324)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 577 5568888652 33334445799 799999987642 2222222233455666777777777777654
No 393
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.30 E-value=2.3 Score=37.74 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=73.5
Q ss_pred cCHHHHHHHH-HcCCcEEEeeccCcCCCCC---cc----chHHHHHHHHHHhCCCcEEEEecCCC---------------
Q psy16780 73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDY---VP----ASIEALPEIAKAVGHKVDVYLDGGVR--------------- 129 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~---~~----~~~~~l~~i~~~~~~~ipiia~GGI~--------------- 129 (202)
.+|++|+... +.|+|.+-++.+.-..... .| -+++.|.++++.+ +++|++.-||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v-~~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL-PNTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 3588888776 5899999887532111111 12 3566788888877 259999988643
Q ss_pred -------CHHHHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 130 -------YGTDVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 130 -------~~~D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
..+++.+++.+|..=|-++|-+..+.. ... ..-.....+.+++.++..|..+|..
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 326 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTA 326 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 347789999999999999996654311 011 1223344556777788888888854
No 394
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.28 E-value=0.84 Score=38.42 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=62.9
Q ss_pred CccccHHHHHHHHHhc--CCCEEEEec--cCHHHH----HHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCC
Q psy16780 48 DETINWSDVTWLKTIT--KLPIVLKGI--LTAEDA----KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a----~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 119 (202)
+++...+.++.+|+.+ ++++.+... .+.+++ +.+.+.|++.+.--- .+.+++.+.++++.. .
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~~~d~~~~~~l~~~~--~ 180 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPL--------PADDLEGRAALARAT--D 180 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCC--------CcccHHHHHHHHhhC--C
Confidence 4445567888888876 456655532 344443 556677777775311 112456667777665 7
Q ss_pred cEEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780 120 VDVYLDGGVRYGTDVFKALALG-AKMVFVG 148 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~G-Ad~V~ig 148 (202)
+||++++.+.+..|+.+++..+ +|.|++-
T Consensus 181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 181 TPIMADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 9999999999999999999876 8988874
No 395
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.20 E-value=0.83 Score=40.46 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcC--CCEEEEeccC----HHHHHHHHHc---CCcEEEeeccCcCCCCCccc-hHHHHHHHHH---Hh-CC
Q psy16780 53 WSDVTWLKTITK--LPIVLKGILT----AEDAKIGVEM---GASAIMVSNHGGRQLDYVPA-SIEALPEIAK---AV-GH 118 (202)
Q Consensus 53 ~~~i~~i~~~~~--~Pv~vK~~~~----~~~a~~l~~a---G~d~I~v~~~gg~~~~~~~~-~~~~l~~i~~---~~-~~ 118 (202)
.+.++.+++..+ .|+++ ++-+ .+++..+.+. |+|+|.+++.+. .+. ..+.+..+++ .. .+
T Consensus 187 ~~A~~~~~~~~p~~~~i~v-evdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~-----~~g~l~~~v~~vr~~ld~~g~~ 260 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIA-LVDTFKDEREEALRAAEALGDRLDGVRLDTPSS-----RRGNFRKIVREVRWTLDIRGYE 260 (343)
T ss_pred HHHHHHHHHHCCCCCCEEE-EEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCC-----CCccHHHHHHHHHHHHHhcCCC
Confidence 446777777664 56665 3322 3555555555 899999987531 011 1223333332 22 24
Q ss_pred CcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 119 KVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 119 ~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++.|.+|||| +.+.+.+.... +|.+.+|+.+..
T Consensus 261 ~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~ 293 (343)
T PRK08662 261 HVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISF 293 (343)
T ss_pred CeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccC
Confidence 5889999999 78888888788 999999997764
No 396
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.19 E-value=1.4 Score=39.10 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=61.3
Q ss_pred HHHHHHHhc-CCCEEEEec------cCHHHHHHHHHcCCcEEEeecc---Cc-CC------------------CC----C
Q psy16780 55 DVTWLKTIT-KLPIVLKGI------LTAEDAKIGVEMGASAIMVSNH---GG-RQ------------------LD----Y 101 (202)
Q Consensus 55 ~i~~i~~~~-~~Pv~vK~~------~~~~~a~~l~~aG~d~I~v~~~---gg-~~------------------~~----~ 101 (202)
-+++|.+.. +-|.++++- .+.+.++++.++|+..++++-. .| |. .+ .
T Consensus 114 s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~ 193 (351)
T cd04737 114 SLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGK 193 (351)
T ss_pred CHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhcccccc
Confidence 344444444 457777754 2456678889999999888631 11 10 00 0
Q ss_pred ------------ccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 102 ------------VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 102 ------------~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
...+|+.+..+++.. ++||+.- ||.+++|+.++...|+|++.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 194 GKGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred CcchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 113566677777766 7899987 589999999999999999988
No 397
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.19 E-value=1.2 Score=40.16 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHHHhc-CCCEEEEec--cCH----HHHHHHHHcCCcEEEeecc--CcCC-CCCc---cchHHHHHHHHHHhC--
Q psy16780 53 WSDVTWLKTIT-KLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNH--GGRQ-LDYV---PASIEALPEIAKAVG-- 117 (202)
Q Consensus 53 ~~~i~~i~~~~-~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~--gg~~-~~~~---~~~~~~l~~i~~~~~-- 117 (202)
.+.+..+++.+ ++|||+=+. .+. +.++.+.++|+|++.+.-. .+.. .+.+ ..+.+.+.++.+.++
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~ 180 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK 180 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh
Confidence 33466676666 679998763 343 4577888999999998532 1110 1111 123455544433332
Q ss_pred CCcEEEE--ecCCCCHHHHHHHH-HhCCCEEEEcHHHH
Q psy16780 118 HKVDVYL--DGGVRYGTDVFKAL-ALGAKMVFVGRPAL 152 (202)
Q Consensus 118 ~~ipiia--~GGI~~~~D~~kal-~~GAd~V~ig~~~l 152 (202)
.++||++ +-.+.+..++++++ +.|||+|.+--.+.
T Consensus 181 ~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 181 ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 1689888 66777788888854 57999998865443
No 398
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.17 E-value=0.82 Score=40.85 Aligned_cols=114 Identities=13% Similarity=-0.003 Sum_probs=68.8
Q ss_pred hhHHHhhhccCccccHHHHHHHHHhcCCCEEEEec-----cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccc-hHH
Q psy16780 38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGI-----LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPA-SIE 107 (202)
Q Consensus 38 ~~~~~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~-----~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~-~~~ 107 (202)
-...++....-|.|-.+-++++....+-|++.-.. +++ +.+..+.+.|+|+|...+..|.+...... -..
T Consensus 103 ~P~~~~~~f~GP~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~ 182 (367)
T cd08205 103 LPDSLLAAFPGPRFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVR 182 (367)
T ss_pred CCHHHHhhCCCCCCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHH
Confidence 33467778888999888888888877888765432 343 44677888999999887654432211111 112
Q ss_pred HHHHHHHHhC----CCcEEEEecCCCCHHHHH----HHHHhCCCEEEEcHHHH
Q psy16780 108 ALPEIAKAVG----HKVDVYLDGGVRYGTDVF----KALALGAKMVFVGRPAL 152 (202)
Q Consensus 108 ~l~~i~~~~~----~~ipiia~GGI~~~~D~~----kal~~GAd~V~ig~~~l 152 (202)
.+.++.+... .+.+++++.. .+..++. .+..+|||+||+.-++.
T Consensus 183 ~v~~av~~a~~~TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 183 ACMEAVRRANEETGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred HHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 2333333332 3344444432 3345554 34458999999998765
No 399
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.16 E-value=1.1 Score=39.36 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=42.2
Q ss_pred CcE-EEEecCCCCH---HHHHHHHHhCCC--EEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 119 KVD-VYLDGGVRYG---TDVFKALALGAK--MVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 119 ~ip-iia~GGI~~~---~D~~kal~~GAd--~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+| |+.|+|+... +.+.-|..+||+ +|..||+.-+ +++.-++..=....+.+|...|..+|++|+..
T Consensus 242 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~v 314 (329)
T PRK04161 242 HLPYIYLSAGVSAKLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNRV 314 (329)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 577 5568888652 233344457998 9999998754 22322322334556677777788888877654
No 400
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.15 E-value=2.5 Score=37.23 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=73.0
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCCc---EEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGAS---AIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~d---~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii 123 (202)
.+..|+++.+ ++.||+++.. .+.+++ +.+.+.|.+ .+.+.............++..+..+++.+ .+||.
T Consensus 122 n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG 198 (329)
T TIGR03569 122 NAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVG 198 (329)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEE
Confidence 3567777775 4899999965 455554 445567875 44444322111111123556677777766 68999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q psy16780 124 LDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV----RKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 124 a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v----~~~i~~l~~~L~~~m~~~G~~ 184 (202)
.|+--....-...|+++||+.+ =+.|-..-...|++.- -+-+..|.++++..-..+|..
T Consensus 199 ~SdHt~G~~~~~aAvalGA~iI--EkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 199 YSDHTLGIEAPIAAVALGATVI--EKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred ECCCCccHHHHHHHHHcCCCEE--EeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8764333344456777899944 3333322122333211 133567777788887777753
No 401
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.10 E-value=0.63 Score=37.51 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
|++++.+.+.-=+||+-... ...+.++.+.+.|++.|.+.-.+ +...+.+..+++.. ..-.+..|-+.+
T Consensus 3 ~~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~-------~~~~e~~~~~~~~~--~~~~~g~gtvl~ 73 (187)
T PRK07455 3 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNS-------DQPAELISQLREKL--PECIIGTGTILT 73 (187)
T ss_pred hHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-------CCHHHHHHHHHHhC--CCcEEeEEEEEc
Confidence 56666665432234432111 12355788899999999985421 23344555554433 343466788999
Q ss_pred HHHHHHHHHhCCCEEEEcH
Q psy16780 131 GTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~ 149 (202)
.+++-.++++|||+|.++.
T Consensus 74 ~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 74 LEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred HHHHHHHHHcCCCEEECCC
Confidence 9999999999999995443
No 402
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.05 E-value=2.6 Score=37.47 Aligned_cols=112 Identities=12% Similarity=0.193 Sum_probs=73.5
Q ss_pred cCHHHHHHHH-HcCCcEEEeeccCcCCCCCc---c----chHHHHHHHHHHhCCCcEEEEecCCCCH-------------
Q psy16780 73 LTAEDAKIGV-EMGASAIMVSNHGGRQLDYV---P----ASIEALPEIAKAVGHKVDVYLDGGVRYG------------- 131 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipiia~GGI~~~------------- 131 (202)
.+|++|.... +.|+|.+-++.+.-...+.+ | -+++.+.++++.+ +++|++.-||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-~~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-PNTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 3588888776 47999998865221112111 1 3566788888877 25999999875544
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHhh-------hcC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy16780 132 ---------TDVFKALALGAKMVFVGRPALWGLA-------HSG------KSGVRKVLDILINEFDQALALSGCTS 185 (202)
Q Consensus 132 ---------~D~~kal~~GAd~V~ig~~~l~~~~-------~~G------~~~v~~~i~~l~~~L~~~m~~~G~~~ 185 (202)
+++.+++.+|..=|-++|-+-.+.. .+. ..-.....+.+++-++..|..+|..+
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8899999999999999996543311 011 12233444567777777888888643
No 403
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.04 E-value=1.5 Score=37.20 Aligned_cols=92 Identities=22% Similarity=0.152 Sum_probs=52.0
Q ss_pred HHHHHHHh-cCCCEEEEec-cCH----HHHHHHHHcCCcEEEeeccC-----cCCCCCccc-hHHHHHHHHHHhCCCcEE
Q psy16780 55 DVTWLKTI-TKLPIVLKGI-LTA----EDAKIGVEMGASAIMVSNHG-----GRQLDYVPA-SIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 55 ~i~~i~~~-~~~Pv~vK~~-~~~----~~a~~l~~aG~d~I~v~~~g-----g~~~~~~~~-~~~~l~~i~~~~~~~ipi 122 (202)
.+...++. .+.|+++=+. .++ +.++.+.++|+|+|.+..+- ++.+...+. ..+.+..+++.+ ++||
T Consensus 88 ~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv 165 (289)
T cd02810 88 DIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPL 165 (289)
T ss_pred HHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCE
Confidence 44444444 4789887654 333 44678888999999986421 111111111 123345555555 6787
Q ss_pred EE--ecCCC--CHHHHHHHH-HhCCCEEEEc
Q psy16780 123 YL--DGGVR--YGTDVFKAL-ALGAKMVFVG 148 (202)
Q Consensus 123 ia--~GGI~--~~~D~~kal-~~GAd~V~ig 148 (202)
++ ++++. +..++++++ .+|||++.+.
T Consensus 166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 166 LVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 76 34433 234445544 4799999875
No 404
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.00 E-value=0.24 Score=41.53 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=37.4
Q ss_pred cHHHHHHHHHhcCC-CEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKL-PIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~-Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++++++.++. |+++.+ +.++++++.+.++|+|+|++++
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 47899999999988 999986 4789999999999999999965
No 405
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=92.99 E-value=0.44 Score=38.48 Aligned_cols=81 Identities=23% Similarity=0.215 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHH-HHHhCCCcEEEEecCCCCH
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI-AKAVGHKVDVYLDGGVRYG 131 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i-~~~~~~~ipiia~GGI~~~ 131 (202)
..|++|.+.+++||..|.+ -..-+|+.|...|+|+|+=|--- | |.+.. ..+ +..+ ++|.++ |-++.
T Consensus 61 ~~I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESEVL-T-----pAD~~--~HI~K~~F--~vPFVc--GarnL 128 (208)
T PF01680_consen 61 KMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-T-----PADEE--NHIDKHNF--KVPFVC--GARNL 128 (208)
T ss_dssp HHHHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEETTS--------S-SS------GGG---SS-EEE--EESSH
T ss_pred HHHHHHHHheEeceeeccccceeehhhhHHHhCCceecccccc-c-----ccccc--ccccchhC--CCCeEe--cCCCH
Confidence 3799999999999999987 45788999999999999865310 0 11111 122 1223 789887 67899
Q ss_pred HHHHHHHHhCCCEEE
Q psy16780 132 TDVFKALALGAKMVF 146 (202)
Q Consensus 132 ~D~~kal~~GAd~V~ 146 (202)
.+++.-+.-||..+=
T Consensus 129 GEALRRI~EGAaMIR 143 (208)
T PF01680_consen 129 GEALRRIAEGAAMIR 143 (208)
T ss_dssp HHHHHHHHTT-SEEE
T ss_pred HHHHhhHHhhhhhhc
Confidence 999999999987653
No 406
>PRK02227 hypothetical protein; Provisional
Probab=92.94 E-value=2.7 Score=35.39 Aligned_cols=130 Identities=14% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHhcC--CCEEEEec---cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHH---HhCCCcEE
Q psy16780 55 DVTWLKTITK--LPIVLKGI---LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK---AVGHKVDV 122 (202)
Q Consensus 55 ~i~~i~~~~~--~Pv~vK~~---~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipi 122 (202)
+|++|++.++ .||...+- ..+ ..+..+...|+|+|.|+-.+.... ....+.+..+.+ ....+..+
T Consensus 41 vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~---~~~~~~~~~v~~a~~~~~~~~~v 117 (238)
T PRK02227 41 VIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTA---EEAVEVMKAVVRAVKDLDPGKIV 117 (238)
T ss_pred HHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcH---HHHHHHHHHHHHhhhhcCCCCeE
Confidence 6666666663 78887654 223 224556678999999965432211 111222322222 22335666
Q ss_pred EEec-----CCC--CHHHHHHHHH-hCCCEEEEcHH------HHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHh
Q psy16780 123 YLDG-----GVR--YGTDVFKALA-LGAKMVFVGRP------ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGE 188 (202)
Q Consensus 123 ia~G-----GI~--~~~D~~kal~-~GAd~V~ig~~------~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~e 188 (202)
++++ .+. ++.++.+..+ +|++++|+-|. ++. .-+.+.+.+|++.. +..-.+..+.|.-.+++
T Consensus 118 Vav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd---~l~~~~L~~Fv~~a-r~~Gl~~gLAGSL~~~d 193 (238)
T PRK02227 118 VAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFD---HMDEEELAEFVAEA-RSHGLMSALAGSLKFED 193 (238)
T ss_pred EEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHh---hCCHHHHHHHHHHH-HHcccHhHhcccCchhh
Confidence 6654 121 4455555554 89999999874 221 12345666665543 33344555666655555
Q ss_pred hhh
Q psy16780 189 IQR 191 (202)
Q Consensus 189 l~~ 191 (202)
+..
T Consensus 194 ip~ 196 (238)
T PRK02227 194 IPA 196 (238)
T ss_pred HHH
Confidence 543
No 407
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=92.93 E-value=1.1 Score=39.24 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=41.3
Q ss_pred CcE-EEEecCCCC---HHHHHHHHHhCC--CEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHhhhhc
Q psy16780 119 KVD-VYLDGGVRY---GTDVFKALALGA--KMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192 (202)
Q Consensus 119 ~ip-iia~GGI~~---~~D~~kal~~GA--d~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~m~~~G~~~i~el~~~ 192 (202)
.+| |+.|+|+.. .+.+.-|..+|| ++|..||+.-+. ++..++..=....+.+|...|..+|++|+..
T Consensus 241 ~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~GRAtW~~-------~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~v 313 (325)
T TIGR01232 241 HLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLCGRATWSG-------AVQVYIEQGEDAAREWLRTTGFKNIDDLNKV 313 (325)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEeehhhhHh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 677 556888865 233334445799 799999987642 2222322333455667777777777777654
No 408
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=92.93 E-value=1.4 Score=39.30 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=61.9
Q ss_pred HHHHHHHHhcC-CCEEEEecc----CHHHHHHHHHc-CCcE--EEeeccCcCCCC--------------CccchHHHHHH
Q psy16780 54 SDVTWLKTITK-LPIVLKGIL----TAEDAKIGVEM-GASA--IMVSNHGGRQLD--------------YVPASIEALPE 111 (202)
Q Consensus 54 ~~i~~i~~~~~-~Pv~vK~~~----~~~~a~~l~~a-G~d~--I~v~~~gg~~~~--------------~~~~~~~~l~~ 111 (202)
+.++..++.++ .|+++ ++- +.+++..+.++ |.|. |.++.+|. ++| ...-+.+.+.+
T Consensus 191 ~A~~a~~~~~Pe~~~iv-lVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~~~~l~~~ 268 (352)
T PRK07188 191 EACKAYHKTFPEDELIA-LVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGVNPELIKA 268 (352)
T ss_pred HHHHHHHHHCCCCCeEE-EEecCcccHHHHHHHHHHhCCCccEEEeCCcch-HhhhhcccccccccccccccccHHHHHH
Confidence 45666666663 35654 432 56666666665 8777 77765432 111 01124455566
Q ss_pred HHHHh---C-CCcEEEEecCCCCHHHHHHHHHhC--CCEEEEcHHHHH
Q psy16780 112 IAKAV---G-HKVDVYLDGGVRYGTDVFKALALG--AKMVFVGRPALW 153 (202)
Q Consensus 112 i~~~~---~-~~ipiia~GGI~~~~D~~kal~~G--Ad~V~ig~~~l~ 153 (202)
+++.+ . +++.|++|||| +...+.+..+.| +|..++|+.+..
T Consensus 269 vr~~Ld~~g~~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 269 LRKALDENGGKHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHHhhCCCCCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence 65554 2 57889999997 677788887889 699999998764
No 409
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.65 E-value=0.83 Score=38.68 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-----ecCCC-CH-------HHHHHHHH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-----DGGVR-YG-------TDVFKALA 139 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-----~GGI~-~~-------~D~~kal~ 139 (202)
.+++++..+.+.|||.|.+...- ...+-.|+...+..+++.+ ++||.. .|++. |. .|+..+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAP--KEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCc--CCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999986531 1112246777788877766 688776 34442 33 34555566
Q ss_pred hCCCEEEEcH
Q psy16780 140 LGAKMVFVGR 149 (202)
Q Consensus 140 ~GAd~V~ig~ 149 (202)
+|||+|.+|-
T Consensus 85 ~GadGvV~G~ 94 (248)
T PRK11572 85 LGFPGLVTGV 94 (248)
T ss_pred cCCCEEEEee
Confidence 8999999985
No 410
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=92.62 E-value=0.32 Score=42.95 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHH-hCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~-~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.|+...+.||++|.|-.-. .+. ..+.+.|..+++. + ++||+.-==|-++-++.++-.+|||+|.+=-+++
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~--~~F--~Gs~e~L~~vr~~~v--~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL 214 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDE--KYF--QGSFENLEAIRNAGV--KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVL 214 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCc--CcC--CCCHHHHHHHHHcCC--CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhC
Confidence 366788889999999985421 111 1246677788776 6 8999998889999999999999999997654443
No 411
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.60 E-value=1.2 Score=36.82 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHH
Q psy16780 58 WLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137 (202)
Q Consensus 58 ~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~ka 137 (202)
.+.+..++|+++-. ....+.+.|+|+|.++... ..+.++++.+.. -.+|+..-.++..++.++
T Consensus 65 ~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d-----------~~~~~~r~~~~~-~~iiG~s~~~s~~~a~~A 127 (221)
T PRK06512 65 PVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNL-----------AALAEAIEKHAP-KMIVGFGNLRDRHGAMEI 127 (221)
T ss_pred HHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccc-----------cCHHHHHHhcCC-CCEEEecCCCCHHHHHHh
Confidence 33344578888742 2556677899999884321 013444444432 236665556788889898
Q ss_pred HHhCCCEEEEcHH
Q psy16780 138 LALGAKMVFVGRP 150 (202)
Q Consensus 138 l~~GAd~V~ig~~ 150 (202)
...|||.+.+|.-
T Consensus 128 ~~~gaDYv~~Gpv 140 (221)
T PRK06512 128 GELRPDYLFFGKL 140 (221)
T ss_pred hhcCCCEEEECCC
Confidence 8899999999964
No 412
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=92.45 E-value=0.28 Score=41.60 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=37.2
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++++|+.++.||.+... .++++++.+.++|+|+++++.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 677999999988999999865 579999999999999999854
No 413
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.43 E-value=0.32 Score=41.07 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.|+.+++..++||++-. +.+++++..+.+.|+|+|.+.+
T Consensus 163 ~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 47789999998899999986 4799999999999999999855
No 414
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=92.34 E-value=0.72 Score=40.45 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHhc--CCCEEEEec--cCHHHHH----HHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCc
Q psy16780 49 ETINWSDVTWLKTIT--KLPIVLKGI--LTAEDAK----IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKV 120 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~--~~Pv~vK~~--~~~~~a~----~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 120 (202)
+++..+.++.+|+.+ +.++.+... .+.+++. .+.+.|++.+.= . ..+.+++.+.++++.. .+
T Consensus 172 ~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq---P-----~~~~~~~~~~~l~~~~--~i 241 (357)
T cd03316 172 LREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE---P-----VPPDDLEGLARLRQAT--SV 241 (357)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC---C-----CCccCHHHHHHHHHhC--CC
Confidence 355677899999886 567877653 4565553 344455555431 0 0112456677777765 79
Q ss_pred EEEEecCCCCHHHHHHHHHhC-CCEEEEc
Q psy16780 121 DVYLDGGVRYGTDVFKALALG-AKMVFVG 148 (202)
Q Consensus 121 piia~GGI~~~~D~~kal~~G-Ad~V~ig 148 (202)
||+++..+++..|+.+++..| +|+|.+-
T Consensus 242 pi~~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 242 PIAAGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred CEEeccccccHHHHHHHHHhCCCCEEecC
Confidence 999999999999999999876 7888764
No 415
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.34 E-value=1.4 Score=38.31 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEE---EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV---YLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipi---ia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
++...++|||.|-+.+ +.+.+.+..+++.+ +.|+ +..||-.-...+.+.-++|.+.|..+...+++
T Consensus 171 a~aY~eAGAD~ifi~~---------~~~~~ei~~~~~~~--~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLEA---------MLDVEEMKRVRDEI--DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEecC---------CCCHHHHHHHHHhc--CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 4566789999998843 34566677777777 3454 44454332245666667899999999887764
No 416
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=92.32 E-value=1.6 Score=33.19 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHh----CCCcEEEEecC
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV----GHKVDVYLDGG 127 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipiia~GG 127 (202)
++++.+-+..+.-|+--+. .++ +.++.+.+.++|.|.+|+..++ +.+.++++.+.+ ..+++|++ ||
T Consensus 20 ~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~-------~~~~~~~~~~~L~~~g~~~i~viv-GG 91 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELDKLGRPDILVVV-GG 91 (132)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhh-------hHHHHHHHHHHHHhcCCCCCEEEE-eC
Confidence 3555555566777665444 344 5568899999999999875322 222233333222 22566666 66
Q ss_pred CCCHHHHHHHHHhCCCEEE
Q psy16780 128 VRYGTDVFKALALGAKMVF 146 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ 146 (202)
....+|..+..++|.|.+.
T Consensus 92 ~~~~~~~~~l~~~Gvd~~~ 110 (132)
T TIGR00640 92 VIPPQDFDELKEMGVAEIF 110 (132)
T ss_pred CCChHhHHHHHHCCCCEEE
Confidence 6667888888899987664
No 417
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=92.30 E-value=1.9 Score=36.71 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia 124 (202)
++.++++.+ ++.||.+|-. .++++ ++.+...|-+-|++.-+|- ..... ..+...++.+++ . ..|||.
T Consensus 106 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~-~--~~PVi~ 180 (258)
T TIGR01362 106 TDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMRE-L--GCPVIF 180 (258)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 466777664 5899999954 56655 6778889999999987654 22211 235556666654 3 689998
Q ss_pred e---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q psy16780 125 D---------------GGVRYGTD--VFKALALGAKMVFVGR 149 (202)
Q Consensus 125 ~---------------GGI~~~~D--~~kal~~GAd~V~ig~ 149 (202)
+ ||-|...- +..++++|||++++=.
T Consensus 181 DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4 56555322 3347778999999865
No 418
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=92.29 E-value=1.5 Score=36.21 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHhcCCCEEEEeccCH---HHHHHHHHcCCcEEEeeccCc--CCCCCccchHHHHHHHHHHhCCCcEEEE
Q psy16780 50 TINWSDVTWLKTITKLPIVLKGILTA---EDAKIGVEMGASAIMVSNHGG--RQLDYVPASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 50 ~~~~~~i~~i~~~~~~Pv~vK~~~~~---~~a~~l~~aG~d~I~v~~~gg--~~~~~~~~~~~~l~~i~~~~~~~ipiia 124 (202)
+...+.++++++..++||+--.+... .........-+|.+.+..... +...+..-+|..+... ....|++.
T Consensus 84 ~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~~~~~~~L 159 (208)
T COG0135 84 DEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----RLSKPVML 159 (208)
T ss_pred CCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc----cccCCEEE
Confidence 34567899999888899884344322 234445566789999987421 1112224467766654 22678999
Q ss_pred ecCCCCHHHHHHHHHhCC-CEEEEcHHH
Q psy16780 125 DGGVRYGTDVFKALALGA-KMVFVGRPA 151 (202)
Q Consensus 125 ~GGI~~~~D~~kal~~GA-d~V~ig~~~ 151 (202)
.||+ +++.+.++++++. .+|=+.|..
T Consensus 160 AGGL-~p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 160 AGGL-NPDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred ECCC-CHHHHHHHHHhcCCceEEecccc
Confidence 9996 7899999999986 888887754
No 419
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=92.23 E-value=2.7 Score=36.32 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=55.7
Q ss_pred HHHHHHHh-c--CCCEEEEe----c-cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCC---C
Q psy16780 55 DVTWLKTI-T--KLPIVLKG----I-LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGH---K 119 (202)
Q Consensus 55 ~i~~i~~~-~--~~Pv~vK~----~-~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~---~ 119 (202)
.|+..++. . +++|+.+. . ... +-++...++|||+|-+-+ ...+.+.+.++.+.++. +
T Consensus 140 kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~~~~~~~~~~~p~ 211 (285)
T TIGR02320 140 KIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEILEFARRFRNHYPR 211 (285)
T ss_pred HHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHHHHHHHhhhhCCC
Confidence 44444443 2 46777762 1 122 335778899999999842 12345555666555542 5
Q ss_pred cEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 120 ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
+|++...+-.....+.+.-++|++.|..+..++++
T Consensus 212 ~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 212 TPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 78877543212224556667899999999877764
No 420
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=92.19 E-value=1.7 Score=36.61 Aligned_cols=41 Identities=34% Similarity=0.355 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCEEE--Eec---cCH-HHHHHHHHcCCcEEEeeccCc
Q psy16780 55 DVTWLKTITKLPIVL--KGI---LTA-EDAKIGVEMGASAIMVSNHGG 96 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~v--K~~---~~~-~~a~~l~~aG~d~I~v~~~gg 96 (202)
+++++++... +|++ |.. .|. ..++.+.+.|+|+++++..+|
T Consensus 54 ~~~el~~~~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G 100 (240)
T COG0284 54 ILEELKARGK-KVFLDLKLADIPNTVALAAKAAADLGADAVTVHAFGG 100 (240)
T ss_pred HHHHHHHhCC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCC
Confidence 7788877654 6664 433 232 335667889999999987765
No 421
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.18 E-value=1.9 Score=38.44 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCC----ccchHHHHHHHHHHhCCCcEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDY----VPASIEALPEIAKAVGHKVDV 122 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~----~~~~~~~l~~i~~~~~~~ipi 122 (202)
++.++++.+ ++.||++|-. .+.++ ++.+.+.|-+-|++.-.|-+.+.+ ...++..+..+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 456666654 5899999965 36655 455667888778776554433321 234667778776655 6999
Q ss_pred EEec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHh-hhcChHHH-HHHHHHHHHHHHHHHHHhCC
Q psy16780 123 YLDG----GVRY--GTDVFKALALGAKMVFVGRPALWGL-AHSGKSGV-RKVLDILINEFDQALALSGC 183 (202)
Q Consensus 123 ia~G----GI~~--~~D~~kal~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~i~~l~~~L~~~m~~~G~ 183 (202)
|++- |.++ ..-...|+++|||++++=..+--.- .+.+...+ -+-++.+.++++.+-...|.
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 9852 4333 3344566778999998876443210 12222111 13345666667766666654
No 422
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=92.09 E-value=0.26 Score=41.26 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
.++++..++..+.|+++++- .+.+.|+.+.++|||.|+++|
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 44666666667999999975 789999999999999999966
No 423
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.06 E-value=2.5 Score=38.20 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCC-----C--------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLD-----Y--------VPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~-----~--------~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+=.+++.+.+..+.++|++.|... -||-.+ . .-|....+.++.+.+ +.+..|++ ..
T Consensus 154 GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~-AS 230 (391)
T PRK12309 154 GIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMG-AS 230 (391)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEe-cc
Confidence 45555444567788889999999887753 233211 0 112334455554443 22455555 45
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGL 155 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~ 155 (202)
+|+..++.+ .+|||.+-+.-.++..+
T Consensus 231 fRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 231 FRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred cCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 899999987 48999999998877654
No 424
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=92.03 E-value=6.1 Score=34.75 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=57.1
Q ss_pred CHHHHHHHHH-cCCcEEEeeccCcCCCC-C------ccchHHHHHHHHHHhCCCcEEEEecCCCC---------------
Q psy16780 74 TAEDAKIGVE-MGASAIMVSNHGGRQLD-Y------VPASIEALPEIAKAVGHKVDVYLDGGVRY--------------- 130 (202)
Q Consensus 74 ~~~~a~~l~~-aG~d~I~v~~~gg~~~~-~------~~~~~~~l~~i~~~~~~~ipiia~GGI~~--------------- 130 (202)
+|++|+...+ .|+|.+-++.+.-...+ . ..-+++.|.++++.+. ++|++.-||=..
T Consensus 165 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~ 243 (321)
T PRK07084 165 QPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKL 243 (321)
T ss_pred CHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCcc
Confidence 5888888764 79999988753211111 1 1236678899988773 599999887532
Q ss_pred -------HHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 131 -------GTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 131 -------~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
-+|+.+++.+|..=|-++|-+-.
T Consensus 244 ~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 244 KDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred ccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 38899999999999999996554
No 425
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.99 E-value=2.1 Score=36.69 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCcc---chHHHHHHHHHHhCCCcEEEE
Q psy16780 54 SDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYVP---ASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipiia 124 (202)
+.++++- ..+.||++|-. .|.++ |+.....|-..|++.-+|=|..+... -++..+..+++.. ..|||+
T Consensus 143 ~LLke~G-~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPViv 219 (286)
T COG2876 143 ALLKEVG-RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIV 219 (286)
T ss_pred HHHHHhc-ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEE
Confidence 3444433 24799999954 45443 67778889888998877666555432 2445666666654 799999
Q ss_pred ec----CCCCHHH--HHHHHHhCCCEEEEc
Q psy16780 125 DG----GVRYGTD--VFKALALGAKMVFVG 148 (202)
Q Consensus 125 ~G----GI~~~~D--~~kal~~GAd~V~ig 148 (202)
+= |=|+... +..++++|||++|+-
T Consensus 220 DpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 220 DPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred CCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 42 3333222 224556899999974
No 426
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.96 E-value=2.2 Score=37.58 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
++.+.+..+..+++++. .+++.+.+..+.+.|++.+.|.... ..++..|+.+++ ...|||.|-|..+.+
T Consensus 78 ~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~~-------~~n~pLL~~~A~---~gkPvilStGmatl~ 146 (329)
T TIGR03569 78 HRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSGE-------ITNAPLLKKIAR---FGKPVILSTGMATLE 146 (329)
T ss_pred HHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECccc-------ccCHHHHHHHHh---cCCcEEEECCCCCHH
Confidence 33555555566888774 5688999999999999999996532 235566676654 378999999999999
Q ss_pred HHHHHHH
Q psy16780 133 DVFKALA 139 (202)
Q Consensus 133 D~~kal~ 139 (202)
++..++.
T Consensus 147 Ei~~Av~ 153 (329)
T TIGR03569 147 EIEAAVG 153 (329)
T ss_pred HHHHHHH
Confidence 9998886
No 427
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=91.95 E-value=0.28 Score=41.78 Aligned_cols=42 Identities=29% Similarity=0.266 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 51 INWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
...+.++.+|+.++.||.++. +.++++++.+. .|+|+++|+.
T Consensus 185 ~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 185 ELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 356799999999999999995 58899999998 9999999965
No 428
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=91.81 E-value=2.7 Score=36.31 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCEEEEec--cCH----HHHHHHHHcCCcEEEeecc--------CcCCCCCc-cchHHH---HHHHHHH-
Q psy16780 55 DVTWLKTITKLPIVLKGI--LTA----EDAKIGVEMGASAIMVSNH--------GGRQLDYV-PASIEA---LPEIAKA- 115 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~--~~~----~~a~~l~~aG~d~I~v~~~--------gg~~~~~~-~~~~~~---l~~i~~~- 115 (202)
.++.|...+++||++-.- .++ +.++.+.++|+.+|.+--. .|...... .+.-+. ++.++++
T Consensus 69 ~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~ 148 (285)
T TIGR02320 69 VVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQ 148 (285)
T ss_pred HHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhc
Confidence 556666677999988642 233 4578899999999999321 11000001 122222 3333333
Q ss_pred hCCCcEEEEecCC----CCHHHHH----HHHHhCCCEEEEc
Q psy16780 116 VGHKVDVYLDGGV----RYGTDVF----KALALGAKMVFVG 148 (202)
Q Consensus 116 ~~~~ipiia~GGI----~~~~D~~----kal~~GAd~V~ig 148 (202)
...+++|++--.. ...++++ .+.++|||+|++-
T Consensus 149 ~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 149 TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 2346888885221 1234443 2334799999984
No 429
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.78 E-value=1.1 Score=38.79 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=56.4
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC-----CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR-----QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGT 132 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~ 132 (202)
+.|+++=.+.+.-.|+.+.++|.+++-+++.+-. ..|.+..+++ .++.+.+.+ ++||+++. |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688777778999999999999999999875211 1133333333 234455545 79999954 667888
Q ss_pred HHH----HHHHhCCCEEEE
Q psy16780 133 DVF----KALALGAKMVFV 147 (202)
Q Consensus 133 D~~----kal~~GAd~V~i 147 (202)
.+. +...+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 863 444589988887
No 430
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.77 E-value=2.1 Score=36.52 Aligned_cols=92 Identities=22% Similarity=0.236 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia 124 (202)
++.++++.+ ++.||.+|-. .++++ ++.+...|-.-|++.-+|- .+... ..+...++.+++ . ..|||.
T Consensus 114 ~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp~~k~-~--~lPVi~ 188 (264)
T PRK05198 114 TDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLPIMRE-T--GAPVIF 188 (264)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhHHHhh-C--CCCEEE
Confidence 467777764 5899999954 56655 6777889999999887654 22211 234555666543 3 599998
Q ss_pred e---------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q psy16780 125 D---------------GGVRYGT--DVFKALALGAKMVFVGR 149 (202)
Q Consensus 125 ~---------------GGI~~~~--D~~kal~~GAd~V~ig~ 149 (202)
+ ||-|+.- =+..++++|||++++=.
T Consensus 189 DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 189 DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4 5555532 23366778999999864
No 431
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.65 E-value=0.44 Score=40.30 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++.+++..++||++-.. .+++++..+.+.|+|+|.+.+
T Consensus 163 ~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 163 NPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 367899999988999999854 789999999999999999855
No 432
>KOG4175|consensus
Probab=91.64 E-value=4.4 Score=33.51 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=70.6
Q ss_pred HhhhccCccccHHHHHHHHHh-cCCCEEEEeccC-------HHHHHHHHHcCCcEEEeecc--------------Cc---
Q psy16780 42 YITSQLDETINWSDVTWLKTI-TKLPIVLKGILT-------AEDAKIGVEMGASAIMVSNH--------------GG--- 96 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~~-------~~~a~~l~~aG~d~I~v~~~--------------gg--- 96 (202)
.++..-..+..++.+++.|.+ +.+|+++=.-.+ ...++.+.++|+.++++-.- .|
T Consensus 72 aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gisl 151 (268)
T KOG4175|consen 72 ALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISL 151 (268)
T ss_pred HHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceE
Confidence 355555666677888888877 789998754322 24467778899998776421 01
Q ss_pred -------CC---C-------C------------Cccch----HH-HHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCC
Q psy16780 97 -------RQ---L-------D------------YVPAS----IE-ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA 142 (202)
Q Consensus 97 -------~~---~-------~------------~~~~~----~~-~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GA 142 (202)
+. + + +...+ .. .+.++++.. ++.|+..-=||.+++++...-.. |
T Consensus 152 vpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-a 229 (268)
T KOG4175|consen 152 VPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-A 229 (268)
T ss_pred EEeeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-c
Confidence 00 0 0 11111 11 233444433 47888776699999999776555 9
Q ss_pred CEEEEcHHHHHH
Q psy16780 143 KMVFVGRPALWG 154 (202)
Q Consensus 143 d~V~ig~~~l~~ 154 (202)
|+|.+|+.++.-
T Consensus 230 DGVvvGSkiv~l 241 (268)
T KOG4175|consen 230 DGVVVGSKIVKL 241 (268)
T ss_pred cceEecHHHHHH
Confidence 999999998864
No 433
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=91.48 E-value=3.6 Score=33.73 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=0.0
Q ss_pred ccCccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHc--CCcEEEeecc----CcCCCCCccchHHHH-HHHHHHhC
Q psy16780 46 QLDETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEM--GASAIMVSNH----GGRQLDYVPASIEAL-PEIAKAVG 117 (202)
Q Consensus 46 ~~d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~a--G~d~I~v~~~----gg~~~~~~~~~~~~l-~~i~~~~~ 117 (202)
+.+-.-..+.++.+++..++|++-... .+.++...+.+. .+|++.+... ||+.. .-+|..+ ..+
T Consensus 82 QLHg~e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~---~~dw~~l~~~~----- 153 (210)
T PRK01222 82 QLHGDETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGK---TFDWSLLPAGL----- 153 (210)
T ss_pred EECCCCCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCC---ccchHHhhhcc-----
Q ss_pred CCcEEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHHHhhhcChHHHHHHHHHHHH
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALAL-GAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~-GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~ 172 (202)
..|++..||| +++.+.+++.. +..+|=+.|.+=..-..+..+.+.++++.++.
T Consensus 154 -~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~~~~ 207 (210)
T PRK01222 154 -AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEKIRAFIEAVKS 207 (210)
T ss_pred -CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHHHHHHHHHHHHh
No 434
>PRK12346 transaldolase A; Provisional
Probab=91.44 E-value=3.1 Score=36.53 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+-.+++.+.+..+.++|++.|... -||-.++ +.+....+.++.+.+ +.+..|++ ..
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-AS 225 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-AS 225 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-cc
Confidence 55555555567788888889999887653 2322111 223344445544433 22444555 55
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++. ..+|+|.+-+.-.++..+.
T Consensus 226 fRn~~qi~--alaG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 226 FRRTEQIL--ALAGCDRLTISPNLLKELQ 252 (316)
T ss_pred cCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence 99999998 3469999999988887654
No 435
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.38 E-value=2.4 Score=35.64 Aligned_cols=82 Identities=27% Similarity=0.281 Sum_probs=53.6
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---C-CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCC-HH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---R-QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRY-GT 132 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~-~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~-~~ 132 (202)
+.|+++=.+.+.-.++.+.++|.+++-+++.+- . ..|.+..+++ .++.+...+ ++||++++ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 478998888999999999999999999887421 1 1233333333 345566666 89999965 6666 44
Q ss_pred HH----HHHHHhCCCEEEE
Q psy16780 133 DV----FKALALGAKMVFV 147 (202)
Q Consensus 133 D~----~kal~~GAd~V~i 147 (202)
++ .+...+|+.++.|
T Consensus 86 ~v~~tv~~~~~aG~agi~I 104 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINI 104 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHHHcCCcEEEe
Confidence 44 4455689998887
No 436
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.33 E-value=1.6 Score=36.66 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=54.0
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCC----CCCccchHHH-H---HHHHHHhCCCcEEEEecCCC---CHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQ----LDYVPASIEA-L---PEIAKAVGHKVDVYLDGGVR---YGT 132 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~----~~~~~~~~~~-l---~~i~~~~~~~ipiia~GGI~---~~~ 132 (202)
+-|+.+=.+.+.-.|+.+.++|+|.|-+++..+.. .|....+++- + +.+++.. ...||+++.--. +++
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 46777766788999999999999999998753311 1223334443 2 3333333 247999976333 335
Q ss_pred HH----HHHHHhCCCEEEE
Q psy16780 133 DV----FKALALGAKMVFV 147 (202)
Q Consensus 133 D~----~kal~~GAd~V~i 147 (202)
++ .+.+.+||++|-+
T Consensus 90 ~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHHHHHHcCCcEEEE
Confidence 54 4566689999998
No 437
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=91.26 E-value=4.8 Score=35.34 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-----c--------cchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-----V--------PASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-----~--------~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+=.+++.+.+..+.++|++.|... -||-.++ + .+....+.++.+.+ +.+.-|+ ...
T Consensus 148 GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im-~AS 224 (317)
T TIGR00874 148 GIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVM-GAS 224 (317)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEE-eec
Confidence 45555555567788888999999888753 2322110 1 23344445554433 2244444 456
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++.+ .+|||.+-+.-.++..+.
T Consensus 225 fRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 225 FRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred cCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 999999997 579999999988887653
No 438
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=91.25 E-value=6.3 Score=32.52 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=55.3
Q ss_pred cHHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780 52 NWSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G 126 (202)
.++.++++++..+.||.+=.. .+ .+.++++.+.+-+ +.+- .|.+.+.+..++......+++.++.
T Consensus 39 ~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~~-i~iK---------IP~T~~Gl~A~~~L~~~Gi~v~~T~ 108 (213)
T TIGR00875 39 FWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAPN-IVVK---------IPMTSEGLKAVKILKKEGIKTNVTL 108 (213)
T ss_pred HHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCCC-eEEE---------eCCCHHHHHHHHHHHHCCCceeEEE
Confidence 356888888877778876443 22 3557777776543 3331 1445555544433323368888876
Q ss_pred CCCCHHHHHHHHHhCCCEEE
Q psy16780 127 GVRYGTDVFKALALGAKMVF 146 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ 146 (202)
|.|..++..+..+||+.|.
T Consensus 109 -vfs~~Qa~~Aa~aGa~yis 127 (213)
T TIGR00875 109 -VFSAAQALLAAKAGATYVS 127 (213)
T ss_pred -ecCHHHHHHHHHcCCCEEE
Confidence 9999999999999999764
No 439
>PRK05269 transaldolase B; Provisional
Probab=91.21 E-value=3.9 Score=35.90 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=55.1
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCC-------------ccchHHHHHHHHHHh---CCCcEEEEecC
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-------------VPASIEALPEIAKAV---GHKVDVYLDGG 127 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~---~~~ipiia~GG 127 (202)
++++-+=.+++.+.+..+.++|++.|...- ||-.++ +.+....+.++.+.+ +.+..|++. .
T Consensus 150 GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~A-S 226 (318)
T PRK05269 150 GINCNLTLLFSFAQARACAEAGVFLISPFV--GRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGA-S 226 (318)
T ss_pred CCceeEeEecCHHHHHHHHHcCCCEEEeec--cHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEee-c
Confidence 344444444567778888888988776532 221111 223444455554433 235566664 6
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhh
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLA 156 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~ 156 (202)
+|+..++.. ..|+|.+-+.-.++..+.
T Consensus 227 frn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 227 FRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred cCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 999999997 569999999988887654
No 440
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.80 E-value=0.55 Score=43.17 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 72 ~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
+.++++++.+.. |+|++-|+.+ +-..+.....+.++ +...+.|+ |+++.+|+..+..+|||++++
T Consensus 219 I~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L---~~~~vKIC---Git~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 219 IYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKL---ILGENKVC---GLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHH---hccccccC---CCCCHHHHHHHHhCCCCEEee
Confidence 378999998865 7999988432 11111122334443 22234443 699999999999999999987
No 441
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.78 E-value=2.3 Score=36.76 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=56.3
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGTD 133 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~D 133 (202)
+-|+++=.+.+.-.|+.+.++|.+++-+++.+-. ..|.+..+.+ .+..+.+.+ ++||+++. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588877778999999999999999999875311 1132322332 334455555 79999954 7777777
Q ss_pred H----HHHHHhCCCEEEE
Q psy16780 134 V----FKALALGAKMVFV 147 (202)
Q Consensus 134 ~----~kal~~GAd~V~i 147 (202)
+ .+...+||.++.|
T Consensus 90 v~~tv~~~~~aG~agi~I 107 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHI 107 (285)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 5 3444589988877
No 442
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=90.75 E-value=3.3 Score=36.41 Aligned_cols=99 Identities=14% Similarity=0.014 Sum_probs=59.1
Q ss_pred CccccHHHHHHHHH-hcCCCEEEEec------cCHHHHH-HHHHcCCcEEEeeccCcCC--CCCccchH----HHHHHHH
Q psy16780 48 DETINWSDVTWLKT-ITKLPIVLKGI------LTAEDAK-IGVEMGASAIMVSNHGGRQ--LDYVPASI----EALPEIA 113 (202)
Q Consensus 48 d~~~~~~~i~~i~~-~~~~Pv~vK~~------~~~~~a~-~l~~aG~d~I~v~~~gg~~--~~~~~~~~----~~l~~i~ 113 (202)
+|+. ++..+.+|+ ..++|++.-+. ...+.++ .....++|++.++-..... ...+..++ +.+..++
T Consensus 97 ~~~~-~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~ 175 (333)
T TIGR02151 97 DPET-ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEIC 175 (333)
T ss_pred Chhh-HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 4553 333466676 46899986542 1133343 3445678888874321111 11122233 4566677
Q ss_pred HHhCCCcEEEE--ecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 114 KAVGHKVDVYL--DGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 114 ~~~~~~ipiia--~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.+ ++||+. +|.-.+.+++..+..+|+|+|-++.
T Consensus 176 ~~~--~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 176 SQL--SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred Hhc--CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 766 799988 4544677777777789999999865
No 443
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=90.69 E-value=0.48 Score=40.48 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhcCCCEEEEe-ccCHHHHHHHHHcCCcEEEeec
Q psy16780 52 NWSDVTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~-~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
..+.++++|+.+++|+.++. +.+++.++.+.+. +|+|+|+.
T Consensus 193 ~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 193 VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 57799999999999999995 5889999999999 99999954
No 444
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.64 E-value=9 Score=33.75 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHHHH----HHHHHcCCc-EEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEec
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-LTAEDA----KIGVEMGAS-AIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~~~~~a----~~l~~aG~d-~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~G 126 (202)
+..++.+.+ .+.||++|.. .+.+++ ..+.+.|.. .+.+.......-.....++..+..+++.+ .+||..|+
T Consensus 124 ~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~SD 200 (327)
T TIGR03586 124 LPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF--NVPVGLSD 200 (327)
T ss_pred HHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh--CCCEEeeC
Confidence 667777775 4899999965 455554 344568874 44443221111011123455667776666 68996765
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH----HHHHHHHHHHHHHHHHHhCCC
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV----RKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v----~~~i~~l~~~L~~~m~~~G~~ 184 (202)
--..-.-...|+++||+.+ =+.|-..-...|++.- -+-++.|.+.++..-..+|..
T Consensus 201 Ht~G~~~~~aAva~GA~iI--EkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 201 HTLGILAPVAAVALGACVI--EKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred CCCchHHHHHHHHcCCCEE--EeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3222233445667899843 3333221112232110 133556777777777777753
No 445
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=90.56 E-value=2.8 Score=35.29 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHH
Q psy16780 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~ 132 (202)
|..+.+..+..++..+. -+.+.+.+..+.+.|++++.|...- ..++..|+.+++ ...|||.|-|..+-+
T Consensus 58 ~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~d-------l~n~~lL~~~A~---tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASGD-------LTNLPLLEYIAK---TGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GGG-------TT-HHHHHHHHT---T-S-EEEE-TT--HH
T ss_pred HHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEecccc-------ccCHHHHHHHHH---hCCcEEEECCCCCHH
Confidence 33344444445666554 4578999999999999999996531 234555666543 479999999999999
Q ss_pred HHHHHHH
Q psy16780 133 DVFKALA 139 (202)
Q Consensus 133 D~~kal~ 139 (202)
++.+++.
T Consensus 127 EI~~Av~ 133 (241)
T PF03102_consen 127 EIERAVE 133 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988876
No 446
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.43 E-value=2.7 Score=36.91 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=62.6
Q ss_pred hccCccccHHHHHHHHHh-cCCCEEEEecc------CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhC
Q psy16780 45 SQLDETINWSDVTWLKTI-TKLPIVLKGIL------TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 45 ~~~d~~~~~~~i~~i~~~-~~~Pv~vK~~~------~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
....|+...+.|+++++. ++.|+.|.+.. ..+..+.+.+.+++.|++++ | .|. . +..+++ .
T Consensus 35 ~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~--G------~P~-~-~~~lk~-~- 102 (320)
T cd04743 35 ALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG--G------RPD-Q-ARALEA-I- 102 (320)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC--C------ChH-H-HHHHHH-C-
Confidence 344667777889999985 68999988752 24667788899999988753 2 122 1 344432 2
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 118 ~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
.+.++. -+.|..++.++..+|||+|.+
T Consensus 103 -Gi~v~~--~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 103 -GISTYL--HVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -CCEEEE--EeCCHHHHHHHHHcCCCEEEE
Confidence 566764 467999999999999998875
No 447
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=90.33 E-value=0.84 Score=38.87 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCC--CCccchHHHHHHHHHHhCC--CcEEEEecCCC-CHH-HHHHHHHhCCCEEEEc
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQL--DYVPASIEALPEIAKAVGH--KVDVYLDGGVR-YGT-DVFKALALGAKMVFVG 148 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~--~ipiia~GGI~-~~~-D~~kal~~GAd~V~ig 148 (202)
.++++.+.+.|+|+|.+.|.+.... +-++.+..++..+...++. .+| ++.-=++ ++. -+.-|.+.||++|-+-
T Consensus 31 ~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 31 WKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 4678899999999999999876443 3344455554444333322 345 2222233 222 2333445799998773
No 448
>KOG3111|consensus
Probab=90.27 E-value=3.6 Score=33.75 Aligned_cols=114 Identities=22% Similarity=0.310 Sum_probs=67.5
Q ss_pred HHHHHHHHHhc-CCCEEEEeccCHHHHHHHHHcCCcEEEeec----cCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAIMVSN----HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 53 ~~~i~~i~~~~-~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~----~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.+++++||+.- .+-+.+|--...+.+....+ -+|.+-|-. .||..+ -..-..-++.+++.+ ++..|=.+||
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQkF--me~mm~KV~~lR~ky-p~l~ievDGG 177 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQKF--MEDMMPKVEWLREKY-PNLDIEVDGG 177 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchhhh--HHHHHHHHHHHHHhC-CCceEEecCC
Confidence 45788888752 22334443355677666554 466665432 222211 011122234444443 3566669999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHHHHHHHHHHHHHHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA 177 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v~~~i~~l~~~L~~~ 177 (202)
+. ++.+-++.++||+++..|++.+.+ ..-.++|+.++++.+..
T Consensus 178 v~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 178 VG-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred cC-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 74 578889999999999999998753 22346677777766544
No 449
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=90.24 E-value=2.6 Score=33.92 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCc---cchHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYV---PASIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
+.++.+++ .++.+.+-.. ........+....+|+|.++.+--+..... ......+..+++.. .++||+. ||-
T Consensus 137 ~~i~~l~~-~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~via~-gVe 212 (241)
T smart00052 137 ATLQRLRE-LGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKL--GLQVVAE-GVE 212 (241)
T ss_pred HHHHHHHH-CCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHC--CCeEEEe-cCC
Confidence 34455543 2556655443 234445566666677777654211111111 11233344444444 6889997 599
Q ss_pred CHHHHHHHHHhCCCEEE
Q psy16780 130 YGTDVFKALALGAKMVF 146 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ 146 (202)
+.++...+..+|++.++
T Consensus 213 ~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 213 TPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred CHHHHHHHHHcCCCEEe
Confidence 99999999999999876
No 450
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.21 E-value=2.4 Score=35.97 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH-H---HHHHHHhCCCcE-EEEecC---CCC-
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA-L---PEIAKAVGHKVD-VYLDGG---VRY- 130 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~-l---~~i~~~~~~~ip-iia~GG---I~~- 130 (202)
+-|+.+=...+.-.|+.+.++|+|.+-++...+. . .|.+..+.+- + +.+++.. +.| |+++-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5677776678899999999999999975322111 1 1333444443 3 3333333 577 777654 434
Q ss_pred HHH----HHHHHH-hCCCEEEE
Q psy16780 131 GTD----VFKALA-LGAKMVFV 147 (202)
Q Consensus 131 ~~D----~~kal~-~GAd~V~i 147 (202)
+++ +.+.+. +||++|-+
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 444 467777 99999999
No 451
>TIGR03586 PseI pseudaminic acid synthase.
Probab=90.19 E-value=3.6 Score=36.27 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHH
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDV 134 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~ 134 (202)
.+.+..+..+++++. .+++.+.+..+.+.|++++.+..+. ..++..|..+++ ...|||.+-|..+.+++
T Consensus 81 ~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~~-------~~n~~LL~~va~---~gkPvilstG~~t~~Ei 149 (327)
T TIGR03586 81 ELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASFE-------ITDLPLIRYVAK---TGKPIIMSTGIATLEEI 149 (327)
T ss_pred HHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCcc-------ccCHHHHHHHHh---cCCcEEEECCCCCHHHH
Confidence 344556667888875 5688899999999999999995532 235566676654 27899999999999999
Q ss_pred HHHHH----hCCCEEEE
Q psy16780 135 FKALA----LGAKMVFV 147 (202)
Q Consensus 135 ~kal~----~GAd~V~i 147 (202)
..++. .|..-|.+
T Consensus 150 ~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 150 QEAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHHCCCCcEEE
Confidence 88875 47643444
No 452
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.94 E-value=1.3 Score=39.37 Aligned_cols=64 Identities=23% Similarity=0.160 Sum_probs=50.4
Q ss_pred CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEE
Q psy16780 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147 (202)
Q Consensus 74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~i 147 (202)
+.++++++.++|++.|.++-.. .....++.++++.. .+|++++-- ++..-+.+++..|+|.+=+
T Consensus 44 tv~Qi~~L~~aGceiVRvav~~-------~~~a~al~~I~~~~--~iPlvADIH-Fd~~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRVAVPD-------MEAAAALPEIKKQL--PVPLVADIH-FDYRLALAAAEAGADALRI 107 (360)
T ss_pred HHHHHHHHHHcCCCEEEEccCC-------HHHHHhHHHHHHcC--CCCEEEecC-CCHHHHHHHHHhCCCEEEE
Confidence 3567889999999999985421 23556788888877 799999875 6788889999999999854
No 453
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=89.56 E-value=3.5 Score=33.91 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHc-CCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEM-GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~a-G~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
+.++++++..+.||.+=.. .+ .+.++.+.+. |--.|.+ |.+...+..++......+++-+ +.
T Consensus 41 ~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI-----------P~T~~gl~ai~~L~~~gi~v~~-T~ 108 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI-----------PVTEDGLKAIKKLSEEGIKTNV-TA 108 (211)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE-----------cCcHhHHHHHHHHHHcCCceee-EE
Confidence 4778888877778876443 23 3556677665 3222222 2233334333322222576555 56
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHhhhcChHHH
Q psy16780 128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGV 163 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ig~~~l~~~~~~G~~~v 163 (202)
|.|..++..+..+||+.|. |++-.+...|.+++
T Consensus 109 V~s~~Qa~~Aa~AGA~yvs---P~vgR~~~~g~dg~ 141 (211)
T cd00956 109 IFSAAQALLAAKAGATYVS---PFVGRIDDLGGDGM 141 (211)
T ss_pred ecCHHHHHHHHHcCCCEEE---EecChHhhcCCCHH
Confidence 9999999999999999854 44433333344443
No 454
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.54 E-value=6.4 Score=32.44 Aligned_cols=96 Identities=13% Similarity=0.010 Sum_probs=56.4
Q ss_pred CccccH--HHHHHHHHhcCCCEEEEec-cCH-HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE
Q psy16780 48 DETINW--SDVTWLKTITKLPIVLKGI-LTA-EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123 (202)
Q Consensus 48 d~~~~~--~~i~~i~~~~~~Pv~vK~~-~~~-~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii 123 (202)
.|+..+ +.++++++.++.|+-+-+. .++ +.+..+.++|+|+|+++. +. +........++.+++. ..-+-
T Consensus 47 ~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~--~q--~~~d~~~~~~~~i~~~---g~~iG 119 (229)
T PLN02334 47 VPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHI--EQ--ASTIHLHRLIQQIKSA---GMKAG 119 (229)
T ss_pred CCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEee--cc--ccchhHHHHHHHHHHC---CCeEE
Confidence 455554 8999999988888665544 333 557788999999998843 31 0001122344444332 23222
Q ss_pred EecCCCCHHHHHHHHHhC--CCEEEEcHH
Q psy16780 124 LDGGVRYGTDVFKALALG--AKMVFVGRP 150 (202)
Q Consensus 124 a~GGI~~~~D~~kal~~G--Ad~V~ig~~ 150 (202)
.+-.-.|+.+..+.+..+ +|.++++.-
T Consensus 120 ls~~~~t~~~~~~~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 120 VVLNPGTPVEAVEPVVEKGLVDMVLVMSV 148 (229)
T ss_pred EEECCCCCHHHHHHHHhccCCCEEEEEEE
Confidence 222233566666666544 999988753
No 455
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=89.50 E-value=2.8 Score=36.19 Aligned_cols=66 Identities=32% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY---LDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipii---a~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
++...++|||.|-+-+ +.+.+.+..+.+.+ +.|++ ..+|-.-..++.+.-++|.+.|..|...+++
T Consensus 167 a~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 167 AKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 4567889999998843 33556677777777 46773 3344211234666667899999999877764
No 456
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.49 E-value=1.8 Score=33.39 Aligned_cols=74 Identities=24% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHH-----HHHHhCCCEEEEcH
Q psy16780 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF-----KALALGAKMVFVGR 149 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~-----kal~~GAd~V~ig~ 149 (202)
.+.++.+.+.|++.+.+.................+..+.+.. ++|+++.....+..+.. .+..+|+|.|.+.-
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 577888999999999886543221111111112344444444 78999988887777754 56678999998875
Q ss_pred H
Q psy16780 150 P 150 (202)
Q Consensus 150 ~ 150 (202)
.
T Consensus 93 ~ 93 (200)
T cd04722 93 A 93 (200)
T ss_pred c
Confidence 3
No 457
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.41 E-value=4.5 Score=34.96 Aligned_cols=92 Identities=21% Similarity=0.135 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCCEEEEec--cCHHH----HHHHHHcCCcEEEeeccCcCCCCCc--cchHHHHHHHHHHhCCCcEEEE
Q psy16780 53 WSDVTWLKTITKLPIVLKGI--LTAED----AKIGVEMGASAIMVSNHGGRQLDYV--PASIEALPEIAKAVGHKVDVYL 124 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~--~~~~~----a~~l~~aG~d~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipiia 124 (202)
.+.++++. .++.||.+|-. .++++ ++.+...|-+-|.+.-+|- ..... ..+...++.+++ . ..|||.
T Consensus 120 tdLL~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~-tFgy~~lv~D~r~ip~mk~-~--~lPVI~ 194 (290)
T PLN03033 120 TDLLVAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT-MFGYNDLIVDPRNLEWMRE-A--NCPVVA 194 (290)
T ss_pred HHHHHHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHh-c--CCCEEE
Confidence 44555555 35899999954 56655 6778889999999987653 22111 235556666543 3 689998
Q ss_pred e--------------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q psy16780 125 D--------------------GGVRYGT--DVFKALALGAKMVFVGR 149 (202)
Q Consensus 125 ~--------------------GGI~~~~--D~~kal~~GAd~V~ig~ 149 (202)
+ ||-|..- =+..|+++|||++++=.
T Consensus 195 DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEv 241 (290)
T PLN03033 195 DITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEV 241 (290)
T ss_pred eCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3 4444422 23456678999999865
No 458
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=89.39 E-value=6.9 Score=33.43 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH-H---HHHHHHhCCCc-EEEEe
Q psy16780 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA-L---PEIAKAVGHKV-DVYLD 125 (202)
Q Consensus 55 ~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~-l---~~i~~~~~~~i-piia~ 125 (202)
.++++++. +-|+.+=...+.-.|+.+.++|+|.|-++...+. . .|....+.+- + +.+++.. +. +|+++
T Consensus 6 ~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD 82 (264)
T PRK00311 6 DLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVAD 82 (264)
T ss_pred HHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEe
Confidence 34444432 4688776678899999999999999976422110 1 1333444443 2 3333333 44 58886
Q ss_pred cCCC----CHHH----HHHHHH-hCCCEEEE
Q psy16780 126 GGVR----YGTD----VFKALA-LGAKMVFV 147 (202)
Q Consensus 126 GGI~----~~~D----~~kal~-~GAd~V~i 147 (202)
-+.. +.++ +.+.+. +||++|-+
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 6543 4466 466777 89999998
No 459
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=89.35 E-value=2.5 Score=33.67 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=50.5
Q ss_pred HHHHHHH---HhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCC
Q psy16780 54 SDVTWLK---TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRY 130 (202)
Q Consensus 54 ~~i~~i~---~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~ 130 (202)
+.+++++ +..+.|+++-. ..+.+.+.|+|+|.+.... .+. ..+++.+.... +....+++
T Consensus 44 ~~~~~l~~~~~~~~~~l~i~~-----~~~la~~~g~~GvHl~~~~--------~~~---~~~r~~~~~~~--~ig~s~h~ 105 (196)
T TIGR00693 44 ALAEKLQELCRRYGVPFIVND-----RVDLALALGADGVHLGQDD--------LPA---SEARALLGPDK--IIGVSTHN 105 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEEC-----HHHHHHHcCCCEEecCccc--------CCH---HHHHHhcCCCC--EEEEeCCC
Confidence 3444444 34578888742 4567788999999884310 111 22233332222 33455899
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q psy16780 131 GTDVFKALALGAKMVFVGRPA 151 (202)
Q Consensus 131 ~~D~~kal~~GAd~V~ig~~~ 151 (202)
.+++.++..+|||.+.+|.-|
T Consensus 106 ~~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 106 LEELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred HHHHHHHhHcCCCEEEECCcc
Confidence 999999999999999998543
No 460
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=89.32 E-value=6.1 Score=31.49 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCC
Q psy16780 51 INWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128 (202)
Q Consensus 51 ~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI 128 (202)
+..+.++++++.++.|+.+.+. ...+.++.+.++|+|+++++. +.. ....+.++.+++ . .+.+..+=+-
T Consensus 44 ~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~--~~~----~~~~~~~~~~~~-~--~~~~g~~~~~ 114 (211)
T cd00429 44 FGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHA--EAT----DHLHRTIQLIKE-L--GMKAGVALNP 114 (211)
T ss_pred cCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECc--cch----hhHHHHHHHHHH-C--CCeEEEEecC
Confidence 3457899999876666654433 224568888899999999854 211 111223333322 2 4444444344
Q ss_pred CCHHHHHHHHHhCCCEEEEcH
Q psy16780 129 RYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 129 ~~~~D~~kal~~GAd~V~ig~ 149 (202)
.+..+..+.+..++|.+.+++
T Consensus 115 ~~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 115 GTPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred CCCHHHHHHHHhhCCEEEEEE
Confidence 455666677776799998765
No 461
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=89.27 E-value=5.9 Score=35.80 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHHHh-cCCCEEE--EeccCHHH-HHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEE-ec
Q psy16780 53 WSDVTWLKTI-TKLPIVL--KGILTAED-AKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYL-DG 126 (202)
Q Consensus 53 ~~~i~~i~~~-~~~Pv~v--K~~~~~~~-a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia-~G 126 (202)
.+.++++++. .+.||.+ |..-.++. ++.+.++|+|.+++++.++ ..+.. ++..+++ . .+-+.. .=
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~akk-~--GikvgVD~l 284 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQK-T--GIYSILDML 284 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHHH-c--CCEEEEEEc
Confidence 4678999987 4677764 33333444 7889999999999976432 12233 2333332 3 234444 45
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 127 GVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 127 GI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+..++.+.++.+..+.|.|.+.+
T Consensus 285 np~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 285 NVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred CCCCHHHHHHHhhCCCCEEEEcc
Confidence 56788888888888999998886
No 462
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=89.06 E-value=0.81 Score=41.13 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+|+.+..+++.. ++|||. .||.+.+|+.+++.+|+|+|.++.
T Consensus 233 tW~di~~lr~~~--~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 233 SWKDLEWIRDFW--DGPMVI-KGILDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred CHHHHHHHHHhC--CCCEEE-EecCCHHHHHHHHhCCCCEEEECC
Confidence 455577777766 789888 669999999999999999998763
No 463
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=88.93 E-value=8 Score=34.44 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred cCHHHHHHHH-HcCC----cEEEeeccCcCCCCC-ccc--hHHHHHHHHHHhC-------CCcEEEEecCCCCH-HHHHH
Q psy16780 73 LTAEDAKIGV-EMGA----SAIMVSNHGGRQLDY-VPA--SIEALPEIAKAVG-------HKVDVYLDGGVRYG-TDVFK 136 (202)
Q Consensus 73 ~~~~~a~~l~-~aG~----d~I~v~~~gg~~~~~-~~~--~~~~l~~i~~~~~-------~~ipiia~GGI~~~-~D~~k 136 (202)
.+|++|+... +.|+ |.+-++.+.-...+. +.| +++.|.++++.+. +++|++.-||=..+ +++.+
T Consensus 188 TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ 267 (350)
T PRK09197 188 TQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIRE 267 (350)
T ss_pred CCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHH
Confidence 4678887776 5687 888876532222222 233 5667888877762 26999999987665 77888
Q ss_pred HHHhCCCEEEEcHHHHH
Q psy16780 137 ALALGAKMVFVGRPALW 153 (202)
Q Consensus 137 al~~GAd~V~ig~~~l~ 153 (202)
++..|..=|-++|.+-.
T Consensus 268 ai~~GI~KINi~T~l~~ 284 (350)
T PRK09197 268 AVSYGVVKMNIDTDTQW 284 (350)
T ss_pred HHHCCCeeEEeCcHHHH
Confidence 99999999999997654
No 464
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=88.88 E-value=4.3 Score=34.05 Aligned_cols=65 Identities=29% Similarity=0.275 Sum_probs=46.9
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
++...++|||.|-+-+ +.+.+.+.++.+.+ +.|+...-+ ....++.+.-.+|.+.|.++..++++
T Consensus 161 ~~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~v~~~-~~~~~~~eL~~lGv~~v~~~~~~~~a 225 (238)
T PF13714_consen 161 AKAYAEAGADMIFIPG---------LQSEEEIERIVKAV--DGPLNVNPG-PGTLSAEELAELGVKRVSYGNSLLRA 225 (238)
T ss_dssp HHHHHHTT-SEEEETT---------SSSHHHHHHHHHHH--SSEEEEETT-SSSS-HHHHHHTTESEEEETSHHHHH
T ss_pred HHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEcC-CCCCCHHHHHHCCCcEEEEcHHHHHH
Confidence 4567899999998843 23455678888888 688877664 32366777778999999999988764
No 465
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=88.88 E-value=2.3 Score=36.88 Aligned_cols=82 Identities=22% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC----C-CCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR----Q-LDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGT 132 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~----~-~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~ 132 (202)
+-|+++-.+.+.-.|+.+.++|.+++-+++.+.. . .|.+..+++ .+..+...+ ++||+++. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 5688877788999999999999999998764221 1 233333333 234455555 79999964 666666
Q ss_pred HH----HHHHHhCCCEEEE
Q psy16780 133 DV----FKALALGAKMVFV 147 (202)
Q Consensus 133 D~----~kal~~GAd~V~i 147 (202)
++ .+...+||.++.|
T Consensus 93 ~v~r~V~~~~~aGaagi~I 111 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHL 111 (294)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 65 4455689988877
No 466
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=88.75 E-value=1.8 Score=34.87 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeeccCcCCCCCccc---hHHHHHHHHHHhCCCcEEEEecCCC
Q psy16780 54 SDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPA---SIEALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 54 ~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~---~~~~l~~i~~~~~~~ipiia~GGI~ 129 (202)
+.++.+++ .++.+.+... ........+....+|+|.++..--+... ... .+..+..+++.. .+.+|+.| |.
T Consensus 138 ~~l~~l~~-~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~--~~~via~g-Ve 212 (236)
T PF00563_consen 138 ENLRRLRS-LGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL--GIKVIAEG-VE 212 (236)
T ss_dssp HHHHHHHH-CT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT--T-EEEEEC-E-
T ss_pred HHHHHHHh-cCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc--ccccceee-cC
Confidence 45666554 5777777755 3334555677778888888764222222 222 223344444444 78899865 99
Q ss_pred CHHHHHHHHHhCCCEEE
Q psy16780 130 YGTDVFKALALGAKMVF 146 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~ 146 (202)
+.++...+..+|++.++
T Consensus 213 ~~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 213 SEEQLELLKELGVDYIQ 229 (236)
T ss_dssp SHHHHHHHHHTTESEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 99999999999999876
No 467
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.74 E-value=3.5 Score=35.73 Aligned_cols=66 Identities=26% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE---ecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPALWG 154 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia---~GGI~~~~D~~kal~~GAd~V~ig~~~l~~ 154 (202)
++...++|||.|-+.+ +.+.+.+.++.+.+ +.|+++ ++|-.-..++.+.-++|.+.|..|...++.
T Consensus 172 a~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 4567889999998843 33566777777777 567733 344221124555667899999999877654
No 468
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.66 E-value=1 Score=38.22 Aligned_cols=45 Identities=27% Similarity=0.189 Sum_probs=37.3
Q ss_pred CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
.+....+.++++|+.++.||++..- .++++++.+.+. +|+++|+.
T Consensus 184 ~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 184 DAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 3444567999999999999999854 689999999975 99999965
No 469
>PLN02858 fructose-bisphosphate aldolase
Probab=88.65 E-value=13 Score=38.87 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=73.6
Q ss_pred CHHHHHHHH-HcCCcEEEeeccCcCCCCCc-c--chHHHHHHHHHHhC-CCcEEEEecCCCC-HHHHHHHHHhCCCEEEE
Q psy16780 74 TAEDAKIGV-EMGASAIMVSNHGGRQLDYV-P--ASIEALPEIAKAVG-HKVDVYLDGGVRY-GTDVFKALALGAKMVFV 147 (202)
Q Consensus 74 ~~~~a~~l~-~aG~d~I~v~~~gg~~~~~~-~--~~~~~l~~i~~~~~-~~ipiia~GGI~~-~~D~~kal~~GAd~V~i 147 (202)
++++++... +.|+|.+-++-+.-...+.+ . -+++.|.++++.+. .++|++.-||=.. -+++.|++..|..=|-+
T Consensus 1251 ~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi 1330 (1378)
T PLN02858 1251 DVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKECIENGVRKFNV 1330 (1378)
T ss_pred CHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 578887776 57999998864221122211 2 36678899988873 3599999885433 57788999999999999
Q ss_pred cHHHHHH----hhhcC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16780 148 GRPALWG----LAHSG----KSGVRKVLDILINEFDQALALSGCT 184 (202)
Q Consensus 148 g~~~l~~----~~~~G----~~~v~~~i~~l~~~L~~~m~~~G~~ 184 (202)
++.+-.+ +...+ ..-.....+.+++-.+..|..+|..
T Consensus 1331 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1331 NTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred CHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9976543 21111 1223444566777778888888754
No 470
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.53 E-value=1 Score=40.17 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+|+.+..+++.. +.|+|.- ||.+.+|+.+++.+|+|+|.++
T Consensus 224 ~w~~i~~ir~~~--~~pviiK-gV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 224 NWQDLRWLRDLW--PHKLLVK-GIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CHHHHHHHHHhC--CCCEEEe-cCCCHHHHHHHHHCCcCEEEEC
Confidence 455667777666 6788887 4999999999999999999875
No 471
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=88.32 E-value=0.97 Score=37.16 Aligned_cols=48 Identities=25% Similarity=0.242 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q psy16780 104 ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153 (202)
Q Consensus 104 ~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l~ 153 (202)
++.+.+..+.... .-||+.-|||+..+|..-+..+|.++|.+||++..
T Consensus 168 ~~~E~l~~~~~~s--~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~ 215 (229)
T COG1411 168 PDYELLTKVLELS--EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHE 215 (229)
T ss_pred CCHHHHHHHHHhc--cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhc
Confidence 4555665554433 67899999999999999999999999999999875
No 472
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=88.22 E-value=6.1 Score=34.22 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Q psy16780 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPALWG 154 (202)
Q Consensus 78 a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~G-Ad~V~ig~~~l~~ 154 (202)
++...++|||+|-+-+ + ..+.+.+..+.+.+...+|++...|-.-.-.....-.+| ...|..|...++.
T Consensus 172 a~aY~eAGAD~ifv~~--~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 172 GQAYEEAGADAILIHS--R------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHHHHHcCCCEEEecC--C------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH
Confidence 4667899999998843 1 135566777777775557886654321112333455678 7889999877654
No 473
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=88.09 E-value=5.8 Score=33.33 Aligned_cols=63 Identities=24% Similarity=0.163 Sum_probs=38.5
Q ss_pred HHHHHHHhcC-CCEEEEec----cCH----HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEe
Q psy16780 55 DVTWLKTITK-LPIVLKGI----LTA----EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125 (202)
Q Consensus 55 ~i~~i~~~~~-~Pv~vK~~----~~~----~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~ 125 (202)
.++.|++.++ .||++=.- .++ +.+++++++|+++|.+-+. ....+.+..++++ .+||++=
T Consensus 63 ~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~--------~~~~~~i~ai~~a---~i~ViaR 131 (240)
T cd06556 63 HVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG--------EWHIETLQMLTAA---AVPVIAH 131 (240)
T ss_pred HHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc--------HHHHHHHHHHHHc---CCeEEEE
Confidence 5566666664 69988653 232 3368899999999999542 1122233444332 4888885
Q ss_pred cCC
Q psy16780 126 GGV 128 (202)
Q Consensus 126 GGI 128 (202)
-|.
T Consensus 132 td~ 134 (240)
T cd06556 132 TGL 134 (240)
T ss_pred eCC
Confidence 554
No 474
>PRK01362 putative translaldolase; Provisional
Probab=88.07 E-value=14 Score=30.57 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCEEEEec-cC----HHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-LT----AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG 127 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG 127 (202)
.+.++++++..+.||.+=.. .+ .++++.+.+.+-+ +.+- .|.+.+.+..++......+++-++.
T Consensus 40 ~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~~-i~iK---------IP~T~~G~~a~~~L~~~Gi~v~~T~- 108 (214)
T PRK01362 40 EEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAPN-VVVK---------IPMTPEGLKAVKALSKEGIKTNVTL- 108 (214)
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCCC-EEEE---------eCCCHHHHHHHHHHHHCCCceEEee-
Confidence 35788888887778876543 22 3556777776533 4331 1445444544433333368888876
Q ss_pred CCCHHHHHHHHHhCCCEEE
Q psy16780 128 VRYGTDVFKALALGAKMVF 146 (202)
Q Consensus 128 I~~~~D~~kal~~GAd~V~ 146 (202)
|.|..++..+..+||+.|.
T Consensus 109 vfs~~Qa~~Aa~aGa~yis 127 (214)
T PRK01362 109 IFSANQALLAAKAGATYVS 127 (214)
T ss_pred ecCHHHHHHHHhcCCcEEE
Confidence 9999999999999999764
No 475
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=88.03 E-value=4.5 Score=35.64 Aligned_cols=75 Identities=31% Similarity=0.320 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCcEEEeecc---CcCCCCCc---cchHHHHHHHHHHhCC-CcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 76 EDAKIGVEMGASAIMVSNH---GGRQLDYV---PASIEALPEIAKAVGH-KVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~---gg~~~~~~---~~~~~~l~~i~~~~~~-~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
+.++.+.++|++.|.++.. +|.....+ .++++.+.++++.++. ++-++..-|+.+.+|+..+..+|++.|-++
T Consensus 28 ~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~ 107 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVA 107 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEE
Confidence 4567889999999999632 22333322 3466777777666532 344455668889999999999999999988
Q ss_pred HH
Q psy16780 149 RP 150 (202)
Q Consensus 149 ~~ 150 (202)
..
T Consensus 108 ~~ 109 (333)
T TIGR03217 108 TH 109 (333)
T ss_pred ec
Confidence 63
No 476
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.75 E-value=14 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHHHHHhc--CCCEEEEec-cC----HHHHHHHHHcCCcEEEeec
Q psy16780 55 DVTWLKTIT--KLPIVLKGI-LT----AEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 55 ~i~~i~~~~--~~Pv~vK~~-~~----~~~a~~l~~aG~d~I~v~~ 93 (202)
+++.+.+.+ ++||++... .+ .+.++.+.++|+|++.+..
T Consensus 56 ~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 56 VIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 444444443 589998765 22 4567889999999999863
No 477
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=87.73 E-value=1.4 Score=36.94 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=36.7
Q ss_pred ccccHHHHHHHHHhcC-CCEEEE-eccCHHHHHHHHHcCCcEEEee
Q psy16780 49 ETINWSDVTWLKTITK-LPIVLK-GILTAEDAKIGVEMGASAIMVS 92 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~-~Pv~vK-~~~~~~~a~~l~~aG~d~I~v~ 92 (202)
+...|+.|+++++.++ +|||.= .+.+.+++....+.|+|+|.+.
T Consensus 175 ~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 175 PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 3357999999999984 998743 3589999999999999999884
No 478
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=87.73 E-value=9.4 Score=34.07 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=54.4
Q ss_pred cCHHHHHHHHH-c----CCcEEEeeccCcCCCC-Ccc--chHHHHHHHHHHh--CCCcE------EEEecCCCCH-HHHH
Q psy16780 73 LTAEDAKIGVE-M----GASAIMVSNHGGRQLD-YVP--ASIEALPEIAKAV--GHKVD------VYLDGGVRYG-TDVF 135 (202)
Q Consensus 73 ~~~~~a~~l~~-a----G~d~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~--~~~ip------iia~GGI~~~-~D~~ 135 (202)
.+|++|+...+ . |+|.+-++-+.-...+ .+. -+++.|.++.+.+ ..++| ++.-||=..+ +++.
T Consensus 195 TdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~ 274 (357)
T TIGR01520 195 TQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIK 274 (357)
T ss_pred CCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHH
Confidence 36788888765 3 8999887642211222 122 3667788884322 11455 9998876554 8899
Q ss_pred HHHHhCCCEEEEcHHHHH
Q psy16780 136 KALALGAKMVFVGRPALW 153 (202)
Q Consensus 136 kal~~GAd~V~ig~~~l~ 153 (202)
+++.+|..=|-+++-+-.
T Consensus 275 kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 275 EALSYGVVKMNIDTDTQW 292 (357)
T ss_pred HHHHCCCeEEEeCcHHHH
Confidence 999999999999997654
No 479
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.70 E-value=3.8 Score=35.44 Aligned_cols=83 Identities=24% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcC---C-CCCccchHHH----HHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR---Q-LDYVPASIEA----LPEIAKAVGHKVDVYLDG--GVRYGTD 133 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~---~-~~~~~~~~~~----l~~i~~~~~~~ipiia~G--GI~~~~D 133 (202)
+-|+.+=++.++-.|+.+.++|.+++.+|+.+-. . .|.+..+++. +++|.+.+ ++||+++. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 4677777788999999999999999999885321 1 2444444443 34455555 89999954 6666444
Q ss_pred HH----HHHHhCCCEEEEc
Q psy16780 134 VF----KALALGAKMVFVG 148 (202)
Q Consensus 134 ~~----kal~~GAd~V~ig 148 (202)
+. ++..+|+.++.|=
T Consensus 95 vartV~~~~~aG~agi~iE 113 (289)
T COG2513 95 VARTVRELEQAGAAGIHIE 113 (289)
T ss_pred HHHHHHHHHHcCcceeeee
Confidence 44 5556798887763
No 480
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=87.52 E-value=8.7 Score=32.67 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHhc--CCCEEEEecc-----CHHHHHHHHHcCCcEEEeec
Q psy16780 55 DVTWLKTIT--KLPIVLKGIL-----TAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 55 ~i~~i~~~~--~~Pv~vK~~~-----~~~~a~~l~~aG~d~I~v~~ 93 (202)
+++.+.+.+ ++||++.... +.+.++.+.++|+|++.+..
T Consensus 59 l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 59 LLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 445555443 6899998652 24667889999999998864
No 481
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=87.39 E-value=0.65 Score=38.50 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.+.++.+.+.|++.++++-..-.+..+......-+..+++..+.+.+++.+||||-.. ..+.-..+.|.+.+|||+.
T Consensus 117 ~t~~~~~~l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i~VtpGIr~~~-~~~~dq~rvd~iVVGR~It 195 (218)
T PRK13305 117 WTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPAD-LPLFKDIRVKAFIAGRALA 195 (218)
T ss_pred cCcchHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCcEEEeCCcCccc-cccccccCCCEEEECCccc
Confidence 455666777788887544421100000111112233455555555567799999998422 2233456789999999998
Q ss_pred HHhhhcChHHHHHHHHHHHHHHHH
Q psy16780 153 WGLAHSGKSGVRKVLDILINEFDQ 176 (202)
Q Consensus 153 ~~~~~~G~~~v~~~i~~l~~~L~~ 176 (202)
.+ ..+ ....+.++++++.
T Consensus 196 ~A---~dP---~~aa~~i~~~i~~ 213 (218)
T PRK13305 196 GA---ANP---AQVAADFHAQIDA 213 (218)
T ss_pred CC---CCH---HHHHHHHHHHHHH
Confidence 53 233 2344555555543
No 482
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=87.38 E-value=6.3 Score=38.28 Aligned_cols=71 Identities=27% Similarity=0.249 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
+.|+...+.||++|.|-.-. ... ..+.+.|..+++.+ ++||+.-==|-+..++.++..+|||+|.+=-.++
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~--~~F--~Gs~~~l~~vr~~v--~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L 144 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEG--RRF--LGSLDDFDKVRAAV--HIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL 144 (695)
T ss_pred HHHHHHHHcCCcEEEEecCc--CcC--CCCHHHHHHHHHhC--CCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc
Confidence 56788889999999986421 111 12456777777777 8999998889999999999999999998755554
No 483
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=87.27 E-value=14 Score=29.99 Aligned_cols=81 Identities=26% Similarity=0.267 Sum_probs=54.6
Q ss_pred hcCCCEEEEeccCHHHHHHHHHcCCcEEEeecc--------CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHH
Q psy16780 62 ITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH--------GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133 (202)
Q Consensus 62 ~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~--------gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D 133 (202)
..+.-||. .+.++++|+.+.++|+-+|..--+ ||- ...++...+.++.+++ .|||++---|....+
T Consensus 12 mlkGGVIM-DV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGV---aRMsDP~~I~eI~~aV--sIPVMAK~RIGHfvE 85 (208)
T PF01680_consen 12 MLKGGVIM-DVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGV---ARMSDPKMIKEIMDAV--SIPVMAKVRIGHFVE 85 (208)
T ss_dssp TTTTEEEE-EESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS------S--HHHHHHHHHH---SSEEEEEEETT-HHH
T ss_pred HhcCCeEE-EecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCc---cccCCHHHHHHHHHhe--Eeceeeccccceeeh
Confidence 34455555 467899999999999988876432 221 1135677889999998 999999999988888
Q ss_pred HHHHHHhCCCEEEEc
Q psy16780 134 VFKALALGAKMVFVG 148 (202)
Q Consensus 134 ~~kal~~GAd~V~ig 148 (202)
+.-.-++|.|.+-=.
T Consensus 86 AqiLealgVD~IDES 100 (208)
T PF01680_consen 86 AQILEALGVDYIDES 100 (208)
T ss_dssp HHHHHHTT-SEEEEE
T ss_pred hhhHHHhCCceeccc
Confidence 866667899987543
No 484
>PRK02227 hypothetical protein; Provisional
Probab=87.23 E-value=4 Score=34.36 Aligned_cols=75 Identities=28% Similarity=0.137 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEE-ecCCC-CHHHHHHH----HHhCCCEEE
Q psy16780 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL-DGGVR-YGTDVFKA----LALGAKMVF 146 (202)
Q Consensus 73 ~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia-~GGI~-~~~D~~ka----l~~GAd~V~ 146 (202)
.+.++|+.+.++|+|.|++-+-. ...-|.-....+++++..++++.||=+ .|++- .+..+..+ -..|+|.|-
T Consensus 8 r~~eEA~~Al~~GaDiIDvK~P~--~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVK 85 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVKNPK--EGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVK 85 (238)
T ss_pred CCHHHHHHHHhcCCCEEEccCCC--CCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEE
Confidence 57899999999999999996521 001122244567788888877788877 45543 34333333 236999999
Q ss_pred EcH
Q psy16780 147 VGR 149 (202)
Q Consensus 147 ig~ 149 (202)
+|-
T Consensus 86 vGl 88 (238)
T PRK02227 86 VGL 88 (238)
T ss_pred EcC
Confidence 985
No 485
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.05 E-value=2.5 Score=37.33 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=50.6
Q ss_pred CHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEc
Q psy16780 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148 (202)
Q Consensus 74 ~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig 148 (202)
|.++++.|.++|+|.|.++-.. ..+.++++++++.+ ++|++++=-.. ..-++++.+.|++.+=|-
T Consensus 38 Tv~QI~~L~~aG~dIVRvtv~~-------~e~A~A~~~Ik~~~--~vPLVaDiHf~-~rla~~~~~~g~~k~RIN 102 (361)
T COG0821 38 TVAQIKALERAGCDIVRVTVPD-------MEAAEALKEIKQRL--NVPLVADIHFD-YRLALEAAECGVDKVRIN 102 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecCC-------HHHHHHHHHHHHhC--CCCEEEEeecc-HHHHHHhhhcCcceEEEC
Confidence 4577899999999999986421 23566789998888 89999976544 777888888998887653
No 486
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=86.95 E-value=0.27 Score=39.45 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=35.9
Q ss_pred CccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 48 DETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 48 d~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
-|-..-++++++++.++.|++..+- .+.+++..++++|+++|..|+
T Consensus 124 lPg~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 124 LPGVMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp ESCCHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred chHHHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 4444467899999999999998864 789999999999999998765
No 487
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=86.88 E-value=6 Score=33.67 Aligned_cols=68 Identities=29% Similarity=0.224 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 76 ~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+.++...+.||++|.|-.-.. .+ ....+.|+.+++.+ .+||..===|-++.++..|...|||+|.+=-
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd~~-~F---~Gs~e~L~~v~~~v--~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~ 137 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTDPK-YF---QGSFEDLRAVRAAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIV 137 (254)
T ss_pred HHHHHHHHhCCeEEEEecCcc-cc---CCCHHHHHHHHHhc--CCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence 557888889999999854221 11 12456777777777 8999998889999999999999999986533
No 488
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=86.77 E-value=2 Score=33.59 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeec
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~ 93 (202)
+...++.++++++..++||++-+..+.+.++.+.++|+|++.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 135 PPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 344678899998888899998777788999999999999998854
No 489
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=86.71 E-value=1.7 Score=34.80 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHHhcCCCEEEEec-cCHHHHHHHHHcCCcEEEeec
Q psy16780 49 ETINWSDVTWLKTITKLPIVLKGI-LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 49 ~~~~~~~i~~i~~~~~~Pv~vK~~-~~~~~a~~l~~aG~d~I~v~~ 93 (202)
|-..-++++++.++++.||+.++- .+.|++..++++||-++.-++
T Consensus 129 PGv~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 129 PGVMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred CcccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 333466999999999999998864 789999999999999887655
No 490
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.67 E-value=11 Score=33.40 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=55.5
Q ss_pred cCHHHHHHHHHc-----CCcEEEeeccCcCCCCC-ccc--hHHHHHHH----HHHhC----CCcEEEEecCCCCH-HHHH
Q psy16780 73 LTAEDAKIGVEM-----GASAIMVSNHGGRQLDY-VPA--SIEALPEI----AKAVG----HKVDVYLDGGVRYG-TDVF 135 (202)
Q Consensus 73 ~~~~~a~~l~~a-----G~d~I~v~~~gg~~~~~-~~~--~~~~l~~i----~~~~~----~~ipiia~GGI~~~-~D~~ 135 (202)
.++++|....+. |+|.+-++.+.-...+. +.| +++.|.++ ++.++ .++|++.-||=..+ +++.
T Consensus 183 TdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~ 262 (345)
T cd00946 183 TQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIR 262 (345)
T ss_pred CCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHH
Confidence 368888888764 89988876532222222 223 56678887 33331 26899998876554 7788
Q ss_pred HHHHhCCCEEEEcHHHHH
Q psy16780 136 KALALGAKMVFVGRPALW 153 (202)
Q Consensus 136 kal~~GAd~V~ig~~~l~ 153 (202)
+++..|..=|-++|-+-.
T Consensus 263 kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 263 EAISYGVVKMNIDTDTQW 280 (345)
T ss_pred HHHHcCCeeEEeCcHHHH
Confidence 899999999999997654
No 491
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=86.58 E-value=0.25 Score=44.06 Aligned_cols=116 Identities=19% Similarity=0.101 Sum_probs=82.3
Q ss_pred ccCCcc-eecccCCCccccc--------------CCCC-------cchhHHHhhhccCccccH--HHHHHHHHhcCCCEE
Q psy16780 13 LVLSQY-LLANFSGKLSQLS--------------NTSD-------SSSLLAYITSQLDETINW--SDVTWLKTITKLPIV 68 (202)
Q Consensus 13 ~~p~~~-~~~n~~~~~~~~~--------------~~~~-------~~~~~~~~~~~~d~~~~~--~~i~~i~~~~~~Pv~ 68 (202)
-+|+.+ +++|.++.+.... ++++ .+.+|+..++++|+.+.. +.|+.+.+....|++
T Consensus 126 ~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i 205 (360)
T COG1304 126 FAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVI 205 (360)
T ss_pred hhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcc
Confidence 367778 8889988754331 2333 455689999999999943 367777778899999
Q ss_pred EEec---cCHHHHHHHHHcCCcE-EEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHh
Q psy16780 69 LKGI---LTAEDAKIGVEMGASA-IMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALAL 140 (202)
Q Consensus 69 vK~~---~~~~~a~~l~~aG~d~-I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~ 140 (202)
.|.. .+.+.+..+...|+.. +++.+.+|+++++.... .+ ++ =..+||+.|..-+.+....
T Consensus 206 ~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vs--------nh-gg---rqlD~g~st~~~L~ei~~a 269 (360)
T COG1304 206 SKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVS--------NH-GG---RQLDWGISTADSLPEIVEA 269 (360)
T ss_pred cHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEE--------cC-CC---ccccCCCChHHHHHHHHHH
Confidence 9987 5678888899999999 88988888775432100 00 11 3457888888877776653
No 492
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=86.53 E-value=1.1 Score=38.37 Aligned_cols=40 Identities=33% Similarity=0.293 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCEEE-EeccCHHHHHHHHHcCCcEEEee
Q psy16780 53 WSDVTWLKTITKLPIVL-KGILTAEDAKIGVEMGASAIMVS 92 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~v-K~~~~~~~a~~l~~aG~d~I~v~ 92 (202)
.+.+.++++.+++||+. ..+.+++++..++.+|+|+|.++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 57888999989999984 55689999999999999999884
No 493
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=86.46 E-value=7.2 Score=34.73 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCC-C
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVR-Y 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~-~ 130 (202)
-.+.++++++++++|++- .+.+.+.+..+.+. +|.+.+..+. ..+...|.++.+ .+.||+.+-|.. +
T Consensus 153 gl~~L~~~~~e~Gl~~~t-ev~d~~~v~~~~~~-~d~lqIga~~-------~~n~~LL~~va~---t~kPVllk~G~~~t 220 (352)
T PRK13396 153 ALELLAAAREATGLGIIT-EVMDAADLEKIAEV-ADVIQVGARN-------MQNFSLLKKVGA---QDKPVLLKRGMAAT 220 (352)
T ss_pred HHHHHHHHHHHcCCcEEE-eeCCHHHHHHHHhh-CCeEEECccc-------ccCHHHHHHHHc---cCCeEEEeCCCCCC
Confidence 356788888889999884 67888999999888 8999996532 224455565533 378999999999 9
Q ss_pred HHHHHHHHH----hCCCEEEEc
Q psy16780 131 GTDVFKALA----LGAKMVFVG 148 (202)
Q Consensus 131 ~~D~~kal~----~GAd~V~ig 148 (202)
.+|+..+.. .|..-|+++
T Consensus 221 ~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 221 IDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 999887765 376545444
No 494
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.46 E-value=8.2 Score=29.97 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCEEEEec-cCHH-HHHHHHHcCCcEEEeeccCcCCCCCccchHH-HHHHHHHHhCCCcEEEEecCCC
Q psy16780 53 WSDVTWLKTITKLPIVLKGI-LTAE-DAKIGVEMGASAIMVSNHGGRQLDYVPASIE-ALPEIAKAVGHKVDVYLDGGVR 129 (202)
Q Consensus 53 ~~~i~~i~~~~~~Pv~vK~~-~~~~-~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipiia~GGI~ 129 (202)
.+++...-+..++-|+.-.. .+++ .++.+.+..+|.|.+|+..|.. ..... .+..+++.=.+++. +..||+-
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h----~~l~~~lve~lre~G~~~i~-v~~GGvi 103 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGH----LTLVPGLVEALREAGVEDIL-VVVGGVI 103 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchH----HHHHHHHHHHHHHhCCcceE-EeecCcc
Confidence 34666666677888887654 4564 4677889999999998853321 11111 22223332223455 4679999
Q ss_pred CHHHHHHHHHhCCCEEEE
Q psy16780 130 YGTDVFKALALGAKMVFV 147 (202)
Q Consensus 130 ~~~D~~kal~~GAd~V~i 147 (202)
.++|..+.-+.|++.+.-
T Consensus 104 p~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 104 PPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CchhHHHHHHhCcceeeC
Confidence 999988888899887753
No 495
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.16 E-value=11 Score=33.16 Aligned_cols=97 Identities=18% Similarity=0.085 Sum_probs=53.6
Q ss_pred HHHHHHHh-cCCCEEEEecc--------CH-HHHHHHHHcC--CcEEEeecc-----CcCCCCCccchHHHHHHHHHHhC
Q psy16780 55 DVTWLKTI-TKLPIVLKGIL--------TA-EDAKIGVEMG--ASAIMVSNH-----GGRQLDYVPASIEALPEIAKAVG 117 (202)
Q Consensus 55 ~i~~i~~~-~~~Pv~vK~~~--------~~-~~a~~l~~aG--~d~I~v~~~-----gg~~~~~~~~~~~~l~~i~~~~~ 117 (202)
.++.+++. .++||++=+.- +. +.++.+.+++ +|++.+.-. +++.........+.+..+++.++
T Consensus 127 ~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 127 LAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQA 206 (344)
T ss_pred HHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHh
Confidence 55556554 57899987642 22 3344444444 999988532 12221111122334566666653
Q ss_pred C---CcEEEE--ecCCC--CHHHHHHHHH-hCCCEEEEcHHH
Q psy16780 118 H---KVDVYL--DGGVR--YGTDVFKALA-LGAKMVFVGRPA 151 (202)
Q Consensus 118 ~---~ipiia--~GGI~--~~~D~~kal~-~GAd~V~ig~~~ 151 (202)
. ++||++ +-++. ...++++++. .|||++.+...+
T Consensus 207 ~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 207 ELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 1 388887 43433 2455666654 699998886543
No 496
>KOG0538|consensus
Probab=86.14 E-value=3.5 Score=36.16 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q psy16780 105 SIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149 (202)
Q Consensus 105 ~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~ 149 (202)
+|.-+..++... +.||+.-| |-+++|+.+|.+.|++++.+.-
T Consensus 211 ~W~Di~wLr~~T--~LPIvvKG-ilt~eDA~~Ave~G~~GIIVSN 252 (363)
T KOG0538|consen 211 SWKDIKWLRSIT--KLPIVVKG-VLTGEDARKAVEAGVAGIIVSN 252 (363)
T ss_pred ChhhhHHHHhcC--cCCeEEEe-ecccHHHHHHHHhCCceEEEeC
Confidence 455666665544 89999865 9999999999999999999864
No 497
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.92 E-value=1.9 Score=37.22 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=44.3
Q ss_pred HhhhccCccccHHHHHHHHHhcCCCEEEEec--cCHHHHHHHHHcCCcEEEeec
Q psy16780 42 YITSQLDETINWSDVTWLKTITKLPIVLKGI--LTAEDAKIGVEMGASAIMVSN 93 (202)
Q Consensus 42 ~~~~~~d~~~~~~~i~~i~~~~~~Pv~vK~~--~~~~~a~~l~~aG~d~I~v~~ 93 (202)
|...-+.|.+.++.+++|++.+++|+.+=+. .+.++.+++.+.|+.-|.++.
T Consensus 178 HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 178 HGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred ccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 5555568999999999999999999988765 567889999999999998854
No 498
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=85.92 E-value=7.9 Score=33.51 Aligned_cols=82 Identities=20% Similarity=0.098 Sum_probs=54.2
Q ss_pred CCCEEEEeccCHHHHHHHHHcCCcEEEeeccCc---C-CCCCccchHH----HHHHHHHHhCCCcEEEEec--CCCCHHH
Q psy16780 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG---R-QLDYVPASIE----ALPEIAKAVGHKVDVYLDG--GVRYGTD 133 (202)
Q Consensus 64 ~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg---~-~~~~~~~~~~----~l~~i~~~~~~~ipiia~G--GI~~~~D 133 (202)
+-++.+-++.+.-.|+.+.++|.+++-+++.+- . ..|.+..+++ .+++|.+.+ ++||+++. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 445655567889999999999999999987521 1 1244433333 345555555 89999954 5555555
Q ss_pred H----HHHHHhCCCEEEE
Q psy16780 134 V----FKALALGAKMVFV 147 (202)
Q Consensus 134 ~----~kal~~GAd~V~i 147 (202)
+ .++..+|+.++.|
T Consensus 92 v~~tV~~~~~aGvagi~I 109 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVM 109 (290)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 5 3444589988877
No 499
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=85.89 E-value=3.8 Score=36.61 Aligned_cols=74 Identities=23% Similarity=0.174 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCcEEEeecc-CcCCCCCccchHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q psy16780 75 AEDAKIGVEMGASAIMVSNH-GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152 (202)
Q Consensus 75 ~~~a~~l~~aG~d~I~v~~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GGI~~~~D~~kal~~GAd~V~ig~~~l 152 (202)
.+.++.+.+.|.++..++|- .|. ....-.+.+..+...++.+.|....| +.++.|+..++++|+|.+=-..|..
T Consensus 198 ~~sa~~l~~~~~~G~aIGGl~~ge---~~~~~~~~v~~~~~~lp~~kPryl~G-vg~P~~i~~~v~~GvD~FD~~~p~r 272 (366)
T PRK00112 198 RESAKGLVEIDFDGYAIGGLSVGE---PKEEMYRILEHTAPLLPEDKPRYLMG-VGTPEDLVEGVARGVDMFDCVMPTR 272 (366)
T ss_pred HHHHHHHHhCCCceeEeccccCCC---CHHHHHHHHHHHHhhCCCcCCeEecC-CCCHHHHHHHHHcCCCEEeeCCccc
Confidence 35567788899999998763 221 11112234666666777789998877 9999999999999999876555544
No 500
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.87 E-value=9.8 Score=32.29 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhcCCCEEEEeccCHHHHHHHHHcCCcEEEeeccCcCCCCCccchHHHHHHHHHHhCCCcEEEEecC-CCC
Q psy16780 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGG-VRY 130 (202)
Q Consensus 52 ~~~~i~~i~~~~~~Pv~vK~~~~~~~a~~l~~aG~d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipiia~GG-I~~ 130 (202)
-.+.+.+++++.++|++- .+.+.+.+..+.+ .+|.+.+..+. ..+.+.|..+.+ ...||+.+-| ..+
T Consensus 67 gl~~L~~~~~~~Gl~~~T-ev~d~~~v~~~~e-~vdilqIgs~~-------~~n~~LL~~va~---tgkPVilk~G~~~t 134 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVS-EIMSERQLEEAYD-YLDVIQVGARN-------MQNFEFLKTLSH---IDKPILFKRGLMAT 134 (250)
T ss_pred HHHHHHHHHHHcCCCEEE-eeCCHHHHHHHHh-cCCEEEECccc-------ccCHHHHHHHHc---cCCeEEEeCCCCCC
Confidence 356788888888999886 7788999999988 69999996532 223455565543 3789999999 888
Q ss_pred HHHHHHHHH----hCCCEEEEc
Q psy16780 131 GTDVFKALA----LGAKMVFVG 148 (202)
Q Consensus 131 ~~D~~kal~----~GAd~V~ig 148 (202)
.+|+..+.. .|..-+++.
T Consensus 135 ~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 135 IEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 888887765 476544443
Done!