RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16780
(202 letters)
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 245 bits (627), Expect = 7e-82
Identities = 77/145 (53%), Positives = 103/145 (71%)
Query: 52 NWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPE 111
W D+ WL+ K P+V+KGIL+ EDAK VE G I+VSNHGGRQLD PA+I+ALPE
Sbjct: 158 TWDDLAWLRDQWKGPLVVKGILSPEDAKRAVEAGVDGIVVSNHGGRQLDGAPATIDALPE 217
Query: 112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI 171
I AVG ++ V +DGG+R GTDV KALALGA V +GRP L+GLA G++GV L+IL
Sbjct: 218 IVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEILR 277
Query: 172 NEFDQALALSGCTSVGEIQREMVVH 196
+E ++ +AL GCTS+ ++ ++
Sbjct: 278 DELERTMALLGCTSIADLTPSLLRR 302
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
family occurs in both prokaryotes and eukaryotes.
Members of this family include flavocytochrome b2
(FCB2), glycolate oxidase (GOX), lactate monooxygenase
(LMO), mandelate dehydrogenase (MDH), and long chain
hydroxyacid oxidase (LCHAO). In green plants, glycolate
oxidase is one of the key enzymes in photorespiration
where it oxidizes glycolate to glyoxylate. LMO catalyzes
the oxidation of L-lactate to acetate and carbon
dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
It is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate.
Length = 299
Score = 243 bits (623), Expect = 2e-81
Identities = 79/141 (56%), Positives = 105/141 (74%)
Query: 51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALP 110
+ W D+ WL++ K P++LKGILT EDA V+ GA I+VSNHGGRQLD PA+I+ALP
Sbjct: 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALP 218
Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDIL 170
EI AVG +++V LDGG+R GTDV KALALGA V +GRP L+GLA G++GV VL+IL
Sbjct: 219 EIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEIL 278
Query: 171 INEFDQALALSGCTSVGEIQR 191
+E ++A+AL GC S+ ++
Sbjct: 279 RDELERAMALLGCASLADLDP 299
>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase.
Length = 364
Score = 215 bits (550), Expect = 1e-69
Identities = 95/178 (53%), Positives = 125/178 (70%)
Query: 20 LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G LS + S L A+ + D +++W D+ WL++IT LPI++KG+LT EDA
Sbjct: 179 LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAI 238
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
VE+G + I+VSNHG RQLDY PA+I L E+ +AVG +V V LDGGVR GTDVFKALA
Sbjct: 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
LGA+ V VGRP ++GLA G+ GVRKV+++L +E + +ALSGC SV +I R V E
Sbjct: 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTE 356
>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase.
Length = 366
Score = 209 bits (533), Expect = 4e-67
Identities = 99/179 (55%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 20 LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
L NF G L ++ +DS L +Y+ Q+D T++W DV WL+TITKLPI++KG+LT EDA
Sbjct: 179 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 237
Query: 79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
+I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR GTDVFKAL
Sbjct: 238 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 297
Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
ALGA +F+GRP ++ LA G++GVRKVL +L +EF+ +ALSGC S+ EI R + E
Sbjct: 298 ALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 356
>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid
oxidase.
Length = 367
Score = 203 bits (518), Expect = 8e-65
Identities = 99/179 (55%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 20 LANFSG-KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDA 78
L NF G L ++ +DS L +Y+ Q+D T++W DV WL+TITKLPI++KG+LT EDA
Sbjct: 180 LKNFEGLDLGKMDEANDSG-LASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDA 238
Query: 79 KIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKAL 138
+I ++ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR GTDVFKAL
Sbjct: 239 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 298
Query: 139 ALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
ALGA +F+GRP ++ LA G++GVRKVL +L +EF+ +ALSGC S+ EI R + E
Sbjct: 299 ALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357
>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain.
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a
respiratory enzyme located in the intermembrane space of
fungal mitochondria which catalyzes the oxidation of
L-lactate to pyruvate. FCB2 also participates in a short
electron-transport chain involving cytochrome c and
cytochrome oxidase which ultimately directs the reducing
equivalents gained from L-lactate oxidation to oxygen,
yielding one molecule of ATP for every L-lactate
molecule consumed. FCB2 is composed of 2 domains: a
C-terminal flavin-binding domain, which includes the
active site for lacate oxidation, and an N-terminal
b2-cytochrome domain, required for efficient cytochrome
c reduction. FCB2 is a homotetramer and contains two
noncovalently bound cofactors, FMN and heme per subunit.
Length = 344
Score = 198 bits (506), Expect = 4e-63
Identities = 75/150 (50%), Positives = 99/150 (66%), Gaps = 3/150 (2%)
Query: 43 ITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYV 102
++ +D T+ W D+ WL+ TKLPIVLKG+ T EDA + E G I++SNHGGRQLD
Sbjct: 192 MSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTA 251
Query: 103 PASIEALPEI---AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
PA IE L EI V K++VY+DGGVR GTDV KAL LGAK V +GRP L+ L+ G
Sbjct: 252 PAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYG 311
Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEI 189
+ GV K + IL +E + + L G TS+ ++
Sbjct: 312 EEGVEKAIQILKDEIETTMRLLGVTSLDQL 341
>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding
domain. LMO is a FMN-containing enzyme that catalyzes
the conversion of L-lactate and oxygen to acetate,
carbon dioxide, and water. LMO is a member of the family
of alpha-hydroxy acid oxidases. It is thought to be a
homooctamer with two- and four- fold axes in the center
of the octamer.
Length = 383
Score = 197 bits (503), Expect = 3e-62
Identities = 71/140 (50%), Positives = 95/140 (67%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
W D+ +L+ T LPIVLKGIL +DA+ VE G ++VSNHGGRQ+D A+++ALPEI
Sbjct: 242 WEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEI 301
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
+AVG ++ V D GVR G D+ KALALGAK V +GRP +GLA G+ GV VL L+
Sbjct: 302 VEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLA 361
Query: 173 EFDQALALSGCTSVGEIQRE 192
E D + L+G S+ E+ R+
Sbjct: 362 ELDLTMGLAGIRSIAELTRD 381
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 190 bits (485), Expect = 9e-60
Identities = 71/162 (43%), Positives = 102/162 (62%)
Query: 38 SLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGR 97
S+ Y+++ I+ D + P+VLKGIL EDA GA I VSNHGGR
Sbjct: 192 SIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGR 251
Query: 98 QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH 157
QLD+ ++ ++LPEI +AVG +++V DGG+R G DV KALALGA V +GRP L+GLA
Sbjct: 252 QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAA 311
Query: 158 SGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
G++GV +VL+I+ E A+AL+G ++ E++R +V
Sbjct: 312 GGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353
>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain.
LOX is a member of the family of FMN-containing
alpha-hydroxyacid oxidases and catalyzes the oxidation
of l-lactate using molecular oxygen to generate pyruvate
and H2O2. This family occurs in both prokaryotes and
eukaryotes. Members of this family include
flavocytochrome b2 (FCB2), glycolate oxidase (GOX),
lactate monooxygenase (LMO), mandelate dehydrogenase
(MDH), and long chain hydroxyacid oxidase (LCHAO).
Length = 351
Score = 174 bits (442), Expect = 1e-53
Identities = 68/152 (44%), Positives = 99/152 (65%)
Query: 40 LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL 99
++ I + + ++ +D+ ++ I+ LP+++KGI + EDA + + GA I VSNHGGRQL
Sbjct: 197 ISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL 256
Query: 100 DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
D PAS ++LPEIA+AV H+V + D GVR G VFKALA GA V VGRP L+GLA G
Sbjct: 257 DGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGG 316
Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
GV VL+ L E + L+G ++ +++R
Sbjct: 317 AQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348
>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin
system. Members of this protein family possess an
N-terminal heme-binding domain and C-terminal
flavodehydrogenase domain, and share homology to yeast
flavocytochrome b2, to E. coli L-lactate dehydrogenase
[cytochrome], to (S)-mandelate dehydrogenase, etc. This
enzyme appears only in the context of the mycofactocin
system. Interestingly, it is absent from the four
species detected so far with mycofactocin but without an
F420 biosynthesis system.
Length = 385
Score = 170 bits (433), Expect = 7e-52
Identities = 79/143 (55%), Positives = 98/143 (68%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
W DV WL+ P +LKGI +DA+ V+ GA+AI VSNHGG LD PA+I ALP I
Sbjct: 236 WEDVAWLREQWGGPFMLKGITRPDDARRAVDAGATAISVSNHGGNNLDGTPAAIRALPAI 295
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILIN 172
A+AVG +V+V LDGG+R G+DV KALALGA+ V +GR LWGLA +G++GV VLDIL
Sbjct: 296 AEAVGDQVEVLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDILRQ 355
Query: 173 EFDQALALSGCTSVGEIQREMVV 195
D AL G SV E+ RE +V
Sbjct: 356 GIDSALLGLGKASVHELSREDLV 378
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 163 bits (415), Expect = 4e-49
Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 20 LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L N S L + + D + ++ + D +I+W D+ W++ P+V+KGIL EDA+
Sbjct: 204 LGNISAYLGKPTGLED---YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDAR 260
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
V GA I+VSNHGGRQLD V +S ALP IA AV + + D G+R G DV + +A
Sbjct: 261 DAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
LGA V +GR ++ LA +G++GV +LD++ E A+ L+G S+ EI R+ +V
Sbjct: 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376
>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding
domain. MDH is part of a widespread family of
homologous FMN-dependent a-hydroxy acid oxidizing
enzymes that oxidizes (S)-mandelate to phenylglyoxalate.
MDH is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate. This family occurs in both
prokaryotes and eukaryotes. Members of this family
include flavocytochrome b2 (FCB2), glycolate oxidase
(GOX), lactate monooxygenase (LMO), mandelate
dehydrogenase (MDH), and long chain hydroxyacid oxidase
(LCHAO).
Length = 361
Score = 161 bits (408), Expect = 2e-48
Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 7/179 (3%)
Query: 18 YLLANFSGKLSQLSN-----TSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGI 72
+LL + QL+N D A ++ Q+D + NW D+ WL+ + +++KGI
Sbjct: 185 WLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGI 244
Query: 73 LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
+TAEDAK +E+GA +++SNHGGRQLD A IEAL EI A V +D G+R G+
Sbjct: 245 VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYK--PVLIDSGIRRGS 302
Query: 133 DVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
D+ KALALGA V +GR L+GLA G++GV +VL +L E D+ LAL GC + +
Sbjct: 303 DIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361
>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase. Members of this
protein oxidize L-lactate to pyruvate, reducing
molecular oxygen to hydrogen peroxide. The enzyme is
known in Aerococcus viridans, Streptococcus iniae, and
some strains of Streptococcus pyogenes where it appears
to contribute to virulence [Energy metabolism, Other].
Length = 367
Score = 133 bits (335), Expect = 1e-37
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 40 LAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQL 99
+ + + ++ D+ + + LP+ +KG EDA ++ GAS I V+NHGGRQL
Sbjct: 204 MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL 263
Query: 100 DYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSG 159
D PA+ ++L E+A+AV +V + D GVR G VFKALA GA +V +GRP ++GLA G
Sbjct: 264 DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323
Query: 160 KSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
G R+V + L E + + L+G ++ +++ + H Y
Sbjct: 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY 363
>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase;
Provisional.
Length = 352
Score = 76.0 bits (188), Expect = 2e-16
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 30/162 (18%)
Query: 58 WLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG---------RQ 98
WL I ++ P+++K GI + E AK + G AI V+ GG R
Sbjct: 174 WLDNIAEIVSALPVPVIVKEVGFGI-SKETAKRLADAGVKAIDVAGAGGTSWAAIENYRA 232
Query: 99 LDYVPAS---------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
D AS ++L E A+++ + + GG+R G D+ KALALGA V +
Sbjct: 233 RDDRLASYFADWGIPTAQSLLE-ARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAG 291
Query: 150 PALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
P L G+ V ++++ I E A+ L+G ++ E+++
Sbjct: 292 PFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRK 333
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
Two types of IDIs have been characterized at present.
The long known IDI-1 is only dependent on divalent
metals for activity, whereas IDI-2 requires a metal, FMN
and NADPH. IDI-2 catalyzes the interconversion of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP) in the mevalonate pathway.
Length = 326
Score = 68.7 bits (169), Expect = 6e-14
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 35/170 (20%)
Query: 52 NWSDVTWLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG----- 96
++ WL+ I +L P+++K GI + E AK + G AI V+ GG
Sbjct: 162 DFRG--WLERIEELVKALSVPVIVKEVGFGI-SRETAKRLADAGVKAIDVAGAGGTSWAR 218
Query: 97 ------RQLDYVPASI---------EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALG 141
+ D A +L E+ A+ + + GG+R G D+ KALALG
Sbjct: 219 VENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALG 277
Query: 142 AKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
A +V + P L A G+ V + ++ +I E A+ L+G ++ E+++
Sbjct: 278 ADLVGMAGPFL-KAALEGEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase,
type 2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the
type 2 enzyme. FMN, NADPH, and Mg2+ are required by this
form, which lacks homology to the type 1 enzyme
(TIGR02150). IPP is precursor to many compounds,
including enzyme cofactors, sterols, and isoprenoids
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 333
Score = 65.0 bits (159), Expect = 1e-12
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 32/168 (19%)
Query: 52 NWSDVTWLKTITKL------PIVLK----GILTAEDAKIGVEMGASAIMVSNHGG----- 96
N+ WL+ I ++ P+++K GI + E AK+ + G SAI V+ GG
Sbjct: 163 NFKG--WLEKIAEICSQLSVPVIVKEVGFGI-SKEVAKLLADAGVSAIDVAGAGGTSWAQ 219
Query: 97 ----RQLDYVPAS---------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143
R AS +L E ++ + GG+R G DV KA+ALGA
Sbjct: 220 VENYRAKGSNLASFFNDWGIPTAASLLE-VRSDAPDAPIIASGGLRTGLDVAKAIALGAD 278
Query: 144 MVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
V + RP L G+ V + ++++I E A+ L+G ++ E+++
Sbjct: 279 AVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKK 326
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 51.8 bits (124), Expect = 2e-08
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 53 WSDVTWLKTIT-KLPIVLKGILTAEDAKIG-VEMGASAIMVSNHGGRQLDYVPASIEALP 110
+ L+ + +V+K T E A E G + + N GG I L
Sbjct: 102 LELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLL 161
Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
I G KV V GG+ D +ALALGA V VG
Sbjct: 162 LILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a separate
subunit in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 50.4 bits (121), Expect = 1e-07
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 59 LKTIT-KLPIVLKGILTAE----DAKIGV-EMGASAIMVSNHGG-------RQLDYVPAS 105
LK I K PI +K L + GV + GA I++ H G + +
Sbjct: 196 LKEINPKAPISVK--LVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP 253
Query: 106 IE-ALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
E AL E+ + + +V + DGG+R G DV KA ALGA V++G AL
Sbjct: 254 WELALAEVHQTLVENGLRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAAL 306
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 50.3 bits (121), Expect = 1e-07
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 59 LKTITKL-PIVLKGILTA----EDAKIGV-EMGASAIMVSNHGG-------RQLDYVPAS 105
LK I +K L A GV + GA I + G +D+
Sbjct: 297 LKEANPWAKISVK--LVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP 354
Query: 106 IE-ALPEIAKAV-----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
E L E + + KV + DGG+R G DV KA ALGA V G AL
Sbjct: 355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL 407
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 49.8 bits (120), Expect = 2e-07
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 85 GASAIMVSNHGGRQLDYVPASIEALPE-----IAKAVGHKVDVYLDGGVRYGTDVFKALA 139
GA+ + +H G +P + L + + +V + GG+R G DV KALA
Sbjct: 252 GAAPLTFIDHVG-----LP-TELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305
Query: 140 LGAKMVFVGRPAL 152
LGA V +G AL
Sbjct: 306 LGADAVGIGTAAL 318
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 40.9 bits (97), Expect = 2e-04
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 22/108 (20%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
V +K + I+ + TAE A+ +E GA A+ +V+ G
Sbjct: 260 VREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVG------ 313
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ + A+A + + V DGG+RY D+ KALA GA V +G
Sbjct: 314 VP-QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360
>gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport
and metabolism].
Length = 310
Score = 40.3 bits (95), Expect = 3e-04
Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 37/162 (22%)
Query: 56 VTWLKTITKLPIVLKGILTAED------AKIGVEMGASAIMVSN---------------- 93
+ +K TK+P+ +K L AK E GA ++ N
Sbjct: 153 LEAVKAATKVPVFVK--LAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPV 210
Query: 94 ----HGGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
GG + P ++ + E+ K +G + + GG+ G D + + GA V VG
Sbjct: 211 LANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVG 270
Query: 149 RPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQ 190
+ G V +I I + L G S+ +I
Sbjct: 271 TALI-------YKGPGIVKEI-IKGLARWLEEKGFESIQDII 304
>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase.
This model describes IMP dehydrogenase, an enzyme of GMP
biosynthesis. This form contains two CBS domains. This
model describes a rather tightly conserved cluster of
IMP dehydrogenase sequences, many of which are
characterized. The model excludes two related families
of proteins proposed also to be IMP dehydrogenases, but
without characterized members. These are related
families are the subject of separate models [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 450
Score = 40.4 bits (95), Expect = 3e-04
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQLDYVP-ASIEA 108
+ +K T L I+ + TAE AK ++ GA + V G R + V I A
Sbjct: 256 IKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITA 315
Query: 109 LPEIAK-AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ ++A+ A + V DGG+RY D+ KALA GA V +G
Sbjct: 316 VYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356
>gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine
monophosphate dehydrogenase. IMPDH catalyzes the
NAD-dependent oxidation of inosine 5'-monophosphate
(IMP) to xanthosine 5' monophosphate (XMP). It is a
rate-limiting step in the de novo synthesis of the
guanine nucleotides. There is often a CBS domain
inserted in the middle of this domain, which is proposed
to play a regulatory role. IMPDH is a key enzyme in the
regulation of cell proliferation and differentiation. It
has been identified as an attractive target for
developing chemotherapeutic agents.
Length = 325
Score = 40.2 bits (95), Expect = 3e-04
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 24/111 (21%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASI-------- 106
+ ++K + ++ ++TAE A+ ++ GA + V G SI
Sbjct: 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPG--------SICTTRIVTG 177
Query: 107 ------EALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
A+ ++A A + V V DGG+R D+ KALA GA V +G
Sbjct: 178 VGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSL 228
>gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase and restricted to the
high GC Gram-positive bacteria. All species in which a
member is found so far (Corynebacterium glutamicum,
Mycobacterium tuberculosis, Streptomyces coelicolor,
etc.) also have IMP dehydrogenase as described by
TIGRFAMs entry TIGR01302 [Unknown function, General].
Length = 475
Score = 39.9 bits (93), Expect = 5e-04
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG-----RQLDYV-----PASIEALPEIA 113
+PIV +++AE + +E GA+ I V G R + V A +E E
Sbjct: 266 GVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR 325
Query: 114 KAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
K GH V+ DGGVR+ DV ALA GA V VG
Sbjct: 326 KLGGH---VWADGGVRHPRDVALALAAGASNVMVG 357
>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 38.4 bits (90), Expect = 0.001
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 108 ALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
A+ E+A A V V DGG+RY D+ KALA GA V +G
Sbjct: 314 AVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGS 356
>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDP is a
member of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN.
Length = 236
Score = 37.8 bits (89), Expect = 0.001
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 74 TAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
+ E+A+ GA A++ GG + + + +PE+ AV + V GG+ G
Sbjct: 111 SVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADG 168
Query: 132 TDVFKALALGAKMVFVG 148
+ ALALGA V +G
Sbjct: 169 RGIAAALALGADGVQMG 185
>gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane
dioxygenase [General function prediction only].
Length = 336
Score = 36.2 bits (84), Expect = 0.006
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMV-----SNHGGRQLDYVPASIEAL-PEIAKAVGHKV 120
V+ ++T +A GA A++ H G V S AL PE+ AV +
Sbjct: 129 KVIHSVITVREALKAERAGADAVIAQGAEAGGHRGGVDLEV--STFALVPEVVDAV-DGI 185
Query: 121 DVYLDGGVRYGTDVFKALALGAKMVFVG 148
V GG+ G + ALALGA V +G
Sbjct: 186 PVIAAGGIADGRGIAAALALGADGVQMG 213
>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase;
Provisional.
Length = 495
Score = 36.1 bits (84), Expect = 0.008
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 56 VTWLKTIT-KLPIVLKGILTAEDAK---------IGVEMGASAI----MVSNHGGRQLDY 101
+ LK+ + I+ ++TA+ AK + + MG+ +I V G Q
Sbjct: 273 IKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQA-- 330
Query: 102 VPASIEALPEIAK-AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
A+ +A+ A V DGG++ D+ KALALGA V +G
Sbjct: 331 -----SAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGS 374
>gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 479
Score = 35.7 bits (83), Expect = 0.012
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 21/98 (21%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDYVPASIEALPE 111
+PIV ++TAE + VE GA + M++ G Q V A
Sbjct: 269 VPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAA--- 325
Query: 112 IAKAVG-HKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
A+ +G H V+ DGGVR+ DV ALA GA V +G
Sbjct: 326 -ARELGAH---VWADGGVRHPRDVALALAAGASNVMIG 359
>gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein. This
model represents a family of proteins, often annotated
as a putative IMP dehydrogenase, related to IMP
dehydrogenase and GMP reductase. Most species with a
member of this family belong to the high GC
Gram-positive bacteria, and these also have the IMP
dehydrogenase described by TIGRFAMs equivalog model
TIGR01302 [Unknown function, General].
Length = 369
Score = 34.8 bits (80), Expect = 0.023
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 65 LPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY-----VPASIEALPEIAKAV--- 116
+P++ G+ A + GA+ ++V G VP + A+ ++A A
Sbjct: 189 VPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMAT-AIADVAAARRDY 247
Query: 117 -----GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
G V V DGG+ D+ KA+A GA V +G P
Sbjct: 248 LDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSP 286
>gnl|CDD|235274 PRK04302, PRK04302, triosephosphate isomerase; Provisional.
Length = 223
Score = 34.1 bits (79), Expect = 0.030
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGA 142
P +E E K V V V G+ G DV AL LGA
Sbjct: 157 PEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGA 196
>gnl|CDD|240078 cd04727, pdxS, PdxS is a subunit of the pyridoxal 5'-phosphate
(PLP) synthase, an important enzyme in deoxyxylulose
5-phosphate (DXP)-independent pathway for de novo
biosynthesis of PLP, present in some eubacteria, in
archaea, fungi, plants, plasmodia, and some metazoa.
Together with PdxT, PdxS forms the PLP synthase, a
heteromeric glutamine amidotransferase (GATase), whereby
PdxT produces ammonia from glutamine and PdxS combines
ammonia with five- and three-carbon phosphosugars to
form PLP. PLP is the biologically active form of vitamin
B6, an essential cofactor in many biochemical processes.
PdxS subunits form two hexameric rings.
Length = 283
Score = 33.8 bits (78), Expect = 0.046
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+LKG + AE A+I E GA A+M L+ VPA I A
Sbjct: 3 FAQMLKGGVIMDVTNAEQARIAEEAGAVAVMA-------LERVPADIRA 44
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 33.3 bits (77), Expect = 0.070
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGA 142
HK+ + +DGG++ G DV KA LGA
Sbjct: 1066 HKIRLQVDGGLKTGLDVIKAAILGA 1090
>gnl|CDD|223292 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme
metabolism].
Length = 296
Score = 32.7 bits (75), Expect = 0.11
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+LKG ++ AE A+I E GA A+M L+ VPA I A
Sbjct: 15 FAQMLKGGVIMDVVNAEQARIAEEAGAVAVMA-------LERVPADIRA 56
>gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 368
Score = 32.5 bits (75), Expect = 0.11
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
G V V DGG+ D+ KA+A GA V +G P
Sbjct: 254 GRYVHVIADGGIGTSGDIAKAIACGADAVMLGSP 287
>gnl|CDD|235045 PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.
Length = 310
Score = 32.2 bits (74), Expect = 0.13
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GGV+ G D F+ + GA MV VG AL K G V + L E +A G S
Sbjct: 248 GGVKTGRDAFEHILCGASMVQVG-TALH------KEGP-AVFERLTKELKAIMAEKGYQS 299
Query: 186 VGE 188
+ +
Sbjct: 300 LED 302
>gnl|CDD|129505 TIGR00411, redox_disulf_1, small redox-active disulfide protein 1.
This protein is homologous to a family of proteins that
includes thioredoxins, glutaredoxins, protein-disulfide
isomerases, and others, some of which have several such
domains. The sequence of this protein at the
redox-active disufide site, CPYC, matches glutaredoxins
rather than thioredoxins, although its overall sequence
seems closer to thioredoxins. It is suggested to be a
ribonucleotide-reducing system component distinct from
thioredoxin or glutaredoxin [Unknown function, General].
Length = 82
Score = 30.6 bits (69), Expect = 0.14
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 101 YVPASIEALPEIAKAVGHKVDVY-------LDGGVRYGTDVFKALALGAKMVFVGRP 150
Y PA+ + E+AK +G V+V + YG A+ + + F+G P
Sbjct: 13 YCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGDVEFIGAP 69
>gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional.
Length = 293
Score = 32.0 bits (74), Expect = 0.14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
+LKG ++ AE AKI E GA A+M L+ VPA I A
Sbjct: 12 FAEMLKGGVIMDVVNAEQAKIAEEAGAVAVMA-------LERVPADIRA 53
>gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 404
Score = 31.9 bits (72), Expect = 0.18
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG+R+ DV KA+A GA V +G
Sbjct: 262 DGGIRFSGDVVKAIAAGADSVMIG 285
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to
Z1214 protein of Escherichia coli. Patatin-like
phospholipase similar to Z1214 protein of Escherichia
coli. This family predominantly consists of bacterial
patatin glycoproteins and some representatives from
eukaryotes and archaea. The patatin protein accounts for
up to 40% of the total soluble protein in potato tubers.
Patatin is a storage protein, but it also has the
enzymatic activity of a lipid acyl hydrolase, catalyzing
the cleavage of fatty acids from membrane lipids.
Members of this family have also been found in
vertebrates.
Length = 215
Score = 31.1 bits (71), Expect = 0.24
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 96 GRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147
G +++ AS ALP V Y DGGV T + A+ LGA + V
Sbjct: 112 GILPEHLLAS-AALPPFFPPVEIDGRYYWDGGVVDNTPLSPAIDLGADEIIV 162
>gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN
binding domain. OYE was the first flavin-dependent
enzyme identified, however its true physiological role
remains elusive to this day. Each monomer of OYE
contains FMN as a non-covalently bound cofactor, uses
NADPH as a reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 327
Score = 30.6 bits (70), Expect = 0.49
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 68 VLKGILTAED----AKIGVEMGASAIMVSNHGGRQLD--------YVPA--SIEALPEIA 113
+ G LT E+ AK E G A+ VS GG YVP +E +I
Sbjct: 220 FVPGGLTLEEAIEIAKALEEAGVDALHVS--GGSYESPPPIIPPPYVPEGYFLELAEKIK 277
Query: 114 KAVGHKVDVYLDGGVRYGTDVFKALALG-AKMVFVGRPAL 152
KAV K+ V GG+R + LA G A +V +GR L
Sbjct: 278 KAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALL 315
>gnl|CDD|213811 TIGR03427, ABC_peri_uca, ABC transporter periplasmic binding
protein, urea carboxylase region. Members of this
family are ABC transporter periplasmic binding proteins
associated with the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease for urea
degradation. The protein is restricted to bacteria with
the pathway, with its gene close to the urea carboxylase
and allophanate hydrolase genes. The substrate for this
transporter therefore is likely to be urea or a compound
from which urea is easily derived [Transport and binding
proteins, Unknown substrate].
Length = 328
Score = 30.1 bits (68), Expect = 0.70
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 2 DIYWMKSSLVCLVLSQYLLANF--SGKLSQ----LSNTSDSSSLLAYITSQLDETINW 53
D+ K +LV L +S YLLA S LS+ + NTSD+ + A+IT + + W
Sbjct: 103 DLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDADIVAAFITKDVTAVVTW 160
>gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase;
Provisional.
Length = 326
Score = 29.9 bits (68), Expect = 0.76
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG+R D+ K++ GA MV +G
Sbjct: 207 DGGIRTHGDIAKSIRFGATMVMIG 230
>gnl|CDD|240074 cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase (HisA) and
the cyclase subunit of imidazoleglycerol phosphate
synthase (HisF). The ProFAR isomerase catalyzes the
fourth step in histidine biosynthesis, an isomerisation
of the aminoaldose moiety of ProFAR to the aminoketose
of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene. The Imidazole glycerol phosphate synthase (IGPS)
catalyzes the fifth step of histidine biosynthesis, the
formation of the imidazole ring. IGPS converts
N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to imidazole glycerol
phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide)
ribonucleotide (AICAR). This conversion involves two
tightly coupled reactions in distinct active sites of
IGPS. The two catalytic domains can be fused, like in
fungi and plants, or peformed by a heterodimer
(HisH-glutaminase and HisF-cyclase), like in bacteria.
Length = 233
Score = 29.5 bits (67), Expect = 0.84
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 107 EALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
EA+ E+A A + +++DGG+R + + L GA V VG
Sbjct: 68 EAIRELAAAWP--LGLWVDGGIRSLENAQEWLKRGASRVIVG 107
>gnl|CDD|224333 COG1415, COG1415, Uncharacterized conserved protein [Function
unknown].
Length = 373
Score = 30.0 bits (68), Expect = 0.85
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143
M A R + L E ++ L G+ G +ALAL A+
Sbjct: 244 MDRGAFYPRYLDLRPKRLNWRRLRRLYE--LNPDDFEELLLVPGI--GPSTVRALALVAE 299
Query: 144 MVFVGRPALW------GLAHSGKSGV-----RKVLDILINEFDQAL 178
+++ G P + A GK GV RK D LI ++ +
Sbjct: 300 VIY-GEPPSFRDPVKYAFAVGGKDGVPFPVNRKTYDELIEFLEELV 344
>gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and
Dihydropyrimidine dehydrogenase (DHPD) FMN-binding
domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
DHPD catalyzes the first step in pyrimidine degradation:
the NADPH-dependent reduction of uracil and thymine to
the corresponding 5,6-dihydropyrimidines. DHPD contains
two FAD, two FMN and eight [4Fe-4S] clusters, arranged
in two electron transfer chains that pass its
homodimeric interface twice. Two of the Fe-S clusters
show a hitherto unobserved coordination involving a
glutamine residue.
Length = 289
Score = 29.6 bits (67), Expect = 0.92
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 26/124 (20%)
Query: 56 VTWLKTITKLPIVLK--GILTAED----AKIGVEMGASAIMVSNH-GGRQLDYV------ 102
+ +K +P+++K ED AK GA + N GR +D
Sbjct: 154 LKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGP 213
Query: 103 -------------PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
P ++ + +A + + + GG+ G DV + L GA V V
Sbjct: 214 KRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVAT 273
Query: 150 PALW 153
+W
Sbjct: 274 ALMW 277
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 KLPIVLK-GILTAEDAKIGVEMGASAIMV 91
+P+++ GI T DA +E+GA A+++
Sbjct: 182 DVPVIVDAGIGTPSDAAQAMELGADAVLL 210
>gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase,
bacterial. A deep split separates two families of GMP
reductase. The other (TIGR01305) is found in eukaryotic
and some proteobacterial lineages, including E. coli,
while this family is found in a variety of bacterial
lineages [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 321
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
DGG+R D+ K++ GA MV +G
Sbjct: 204 DGGIRTHGDIAKSIRFGASMVMIG 227
>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG. This family
consists of several bacterial thiazole biosynthesis
protein G sequences. ThiG, together with ThiF and ThiH,
is proposed to be involved in the synthesis of
4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an
intermediate in the thiazole production pathway.
Length = 246
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 KLPIVLK-GILTAEDAKIGVEMGASAIMV 91
+P+++ GI T DA +E+GA A+++
Sbjct: 174 DVPVIVDAGIGTPSDAAQAMELGADAVLL 202
>gnl|CDD|240092 cd04741, DHOD_1A_like, Dihydroorotate dehydrogenase (DHOD) class 1A
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively.
Length = 294
Score = 29.2 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153
++ + GGV G F+ GA V VG AL
Sbjct: 242 SEIQIIGVGGVLDGRGAFRMRLAGASAVQVG-TALG 276
>gnl|CDD|201920 pfam01680, SOR_SNZ, SOR/SNZ family. Members of this family are
enzymes involved in a new pathway of
pyridoxine/pyridoxal 5-phosphate biosynthesis. This
family was formerly known as UPF0019.
Length = 197
Score = 28.9 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 68 VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEA 108
V+ ++ AE A+I E GA A+M L+ VPA I A
Sbjct: 6 VIMDVVNAEQARIAEEAGAVAVMA-------LERVPADIRA 39
>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase
subunit Pdx1. This protein had been believed to be a
singlet oxygen resistance protein. Subsequent work
showed that it is a protein of pyridoxine (vitamin B6)
biosynthesis, and that pyridoxine quenches the highly
toxic singlet form of oxygen produced by light in the
presence of certain chemicals [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 287
Score = 29.0 bits (65), Expect = 1.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 68 VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114
V+ ++ E AKI E GA A+M L+ VPA I A +A+
Sbjct: 13 VIMDVVNPEQAKIAEEAGAVAVMA-------LERVPADIRASGGVAR 52
>gnl|CDD|180693 PRK06788, PRK06788, flagellar motor switch protein; Validated.
Length = 119
Score = 27.9 bits (62), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 72 ILTAEDAKI--GVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125
I T D I GV++G ++I + D + + E+ K +GHKVDVYL
Sbjct: 28 IDTVSDISIELGVKLGKASITLG-------DVKQLKVGDVLEVEKNLGHKVDVYLS 76
>gnl|CDD|188634 cd00945, Aldolase_Class_I, Class I aldolases. Class I aldolases.
The class I aldolases use an active-site lysine which
stabilizes a reaction intermediates via Schiff base
formation, and have TIM beta/alpha barrel fold. The
members of this family include
2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin.
Length = 201
Score = 28.4 bits (64), Expect = 1.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137
A+I E GA I S G A++E + + +AVG +V V GG++ D A
Sbjct: 135 ARIAAEAGADFIKTST--GFG--GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAA 190
Query: 138 LALGA 142
+ GA
Sbjct: 191 IEAGA 195
>gnl|CDD|227013 COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase
superfamily [General function prediction only].
Length = 292
Score = 28.9 bits (65), Expect = 1.8
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 98 QLDYVPASIEALPEIAKAV---GHKVDVYLDGGVRYGTDVFKALALGAKMVFV 147
LD + AS A+P ++ V G YLDGG+ V +A+ LGA + V
Sbjct: 142 WLDVIRAS-SAIPFYSEGVEINGKN---YLDGGISDSIPVKEAIRLGADKIVV 190
>gnl|CDD|129469 TIGR00373, TIGR00373, transcription factor E. This family of
proteins is, so far, restricted to archaeal genomes.
The family appears to be distantly related to the
N-terminal region of the eukaryotic transcription
initiation factor IIE alpha chain [Transcription,
Transcription factors].
Length = 158
Score = 28.3 bits (63), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 39 LLAYITSQLDETINWSDVTWLKTITKLPIVLK 70
L Y + DET W + TW K VLK
Sbjct: 57 LADYKRRKDDET-GWYEYTWRINYEKALDVLK 87
>gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase
(NMO), formerly referred to as 2-nitropropane
dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent
enzyme that uses molecular oxygen to oxidize (anionic)
alkyl nitronates and, in the case of the enzyme from
Neurospora crassa, (neutral) nitroalkanes to the
corresponding carbonyl compounds and nitrite. Previously
classified as 2-nitropropane dioxygenase, but it is now
recognized that this was the result of the slow
ionization of nitroalkanes to their nitronate (anionic)
forms. The enzymes from the fungus Neurospora crassa and
the yeast Williopsis saturnus var. mrakii (formerly
classified as Hansenula mrakii) contain non-covalently
bound FMN as the cofactor. Active towards linear alkyl
nitronates of lengths between 2 and 6 carbon atoms and,
with lower activity, towards propyl-2-nitronate. The
enzyme from N. crassa can also utilize neutral
nitroalkanes, but with lower activity. One atom of
oxygen is incorporated into the carbonyl group of the
aldehyde product. The reaction appears to involve the
formation of an enzyme-bound nitronate radical and an
a-peroxynitroethane species, which then decomposes,
either in the active site of the enzyme or after
release, to acetaldehyde and nitrite.
Length = 329
Score = 28.9 bits (65), Expect = 2.0
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMV--SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYL 124
V+ + +A++A+ GA A++ GG +V + L + V
Sbjct: 139 KVIPTVSSAKEARKAEAAGADAVVAQGPEAGGHIGTFVGVTTFLLVPTVVDA-VDIPVIA 197
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
GG+ G + ALALGA+ V +G
Sbjct: 198 AGGIADGRGIAAALALGAEGVQIG 221
>gnl|CDD|226678 COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase
involved in regulation of bacterial surface properties,
and related proteins [General function prediction only].
Length = 357
Score = 28.9 bits (65), Expect = 2.0
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAH 157
Y P + +AL + +GH + GGV GT V G + + RP +G A
Sbjct: 289 YAPVAEKALDAL---LGHIDEEGEVGGVSLGTIVGHD-LDGYRDYYPSRPTPYGQAL 341
>gnl|CDD|224329 COG1411, COG1411, Uncharacterized protein related to proFAR
isomerase (HisA) [General function prediction only].
Length = 229
Score = 28.6 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 110 PEIAKAVGHKV--DVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGK 160
E+ V V L GGV D+ L +G V V AL H G
Sbjct: 170 YELLTKVLELSEHPVLLGGGVGGMEDLELLLGMGVSGVLVAT-AL----HEGV 217
>gnl|CDD|235388 PRK05286, PRK05286, dihydroorotate dehydrogenase 2; Reviewed.
Length = 344
Score = 28.6 bits (65), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
Query: 64 KLPIV-LKGILTAEDA--KIGVEMGASAIMV 91
+LPI+ + GI +AEDA KI GAS + +
Sbjct: 289 RLPIIGVGGIDSAEDAYEKI--RAGASLVQI 317
>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase;
Validated.
Length = 502
Score = 28.5 bits (64), Expect = 2.3
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 108 ALPEIAKA-------VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
AL E+AKA G + + DGG+ Y + ALA+GA + +GR
Sbjct: 334 ALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGR 382
>gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein. Proteins
involved in steps 4 and 6 of the histidine biosynthesis
pathway are contained in this family. Histidine is
formed by several complex and distinct biochemical
reactions catalyzed by eight enzymes. The enzymes in
this Pfam entry are called His6 and His7 in eukaryotes
and HisA and HisF in prokaryotes. The structure of HisA
is known to be a TIM barrel fold. In some archaeal HisA
proteins the TIM barrel is composed of two tandem
repeats of a half barrel . This family belong to the
common phosphate binding site TIM barrel family.
Length = 230
Score = 28.2 bits (64), Expect = 2.4
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
+E E+A+AV + V GGV D+ + + G V G
Sbjct: 181 LELTRELAEAV--NIPVIASGGVGSLEDLKELFSEGVDGVIAGS 222
>gnl|CDD|240089 cd04738, DHOD_2_like, Dihydroorotate dehydrogenase (DHOD) class 2.
DHOD catalyzes the oxidation of (S)-dihydroorotate to
orotate. This is the fourth step and the only redox
reaction in the de novo biosynthesis of UMP, the
precursor of all pyrimidine nucleotides. DHOD requires
FMN as co-factor. DHOD divides into class 1 and class 2
based on their amino acid sequences, their cellular
location and their natural electron acceptor used to
reoxidize the flavin group. Members of class 1 are
cytosolic enzymes and multimers, while class 2 enzymes
are membrane associated, monomeric and use respiratory
quinones as their physiological electron acceptors.
Length = 327
Score = 28.6 bits (65), Expect = 2.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 64 KLPIV-LKGILTAEDA--KIGVEMGASAIMV 91
K+PI+ + GI + EDA KI GAS + +
Sbjct: 280 KIPIIGVGGISSGEDAYEKI--RAGASLVQL 308
>gnl|CDD|226214 COG3689, COG3689, Predicted membrane protein [Function unknown].
Length = 271
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
Query: 16 SQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKL---PIVLKG 71
QYL + S + + A +SQ D +L T+ ++ P G
Sbjct: 119 PQYLRPDTSLYFGITEYLKEMRTQGASYSSQDPIKRT--DENYLDTMEEIYNYPDEFAG 175
>gnl|CDD|240086 cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 4. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase.
Length = 353
Score = 28.3 bits (64), Expect = 2.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALW 153
G + D +AL GA +V +GR L
Sbjct: 291 GSINTPDDALEALETGADLVAIGRGLLV 318
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 28.4 bits (63), Expect = 2.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 90 MVSNHGGRQLDYVPASIEALPEIAKAVGHKVD 121
+VS G +Q Y PA+ E + EIA+A +VD
Sbjct: 10 LVSGEGEKQPVYNPATGEVILEIAEASAEQVD 41
>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase.
Length = 505
Score = 28.1 bits (63), Expect = 3.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 115 AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
A H V V DGG+ + KAL LGA V +G
Sbjct: 347 AAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380
>gnl|CDD|232779 TIGR00007, TIGR00007, phosphoribosylformimino-5-aminoimidazole
carboxamide ribotide isomerase. This protein family
consists of HisA,
phosphoribosylformimino-5-aminoimidazole carboxamide
ribotide isomerase, the enzyme catalyzing the fourth
step in histidine biosynthesis. It is closely related to
the enzyme HisF for the sixth step. Examples of this
enzyme in Actinobacteria have been found to be
bifunctional, also possessing phosphoribosylanthranilate
isomerase activity ; the trusted cutoff here has now
been raised to 275.0 to exclude the bifunctional group,
now represented by model TIGR01919. HisA from
Lactococcus lactis was reported to be inactive
(MEDLINE:93322317) [Amino acid biosynthesis, Histidine
family].
Length = 230
Score = 27.5 bits (62), Expect = 4.0
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 75 AEDAKIGVEMGASAI-MVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133
E AK E GA I +V G ++ V ++ + +I + G V V + GG+R D
Sbjct: 31 VEAAKKWEEEGAERIHVVDLDGAKEGGPV--NLPVIKKIVRETG--VPVQVGGGIRSLED 86
Query: 134 VFKALALGAKMVFVGRPAL 152
V K L LG V +G A+
Sbjct: 87 VEKLLDLGVDRVIIGTAAV 105
>gnl|CDD|233375 TIGR01361, DAHP_synth_Bsub, phospho-2-dehydro-3-deoxyheptonate
aldolase. This model describes one of at least three
types of phospho-2-dehydro-3-deoxyheptonate aldolase
(DAHP synthase). This enzyme catalyzes the first of 7
steps in the biosynthesis of chorismate, that last
common precursor of all three aromatic amino acids and
of PABA, ubiquinone and menaquinone. Some members of
this family, including an experimentally characterized
member from Bacillus subtilis, are bifunctional, with a
chorismate mutase domain N-terminal to this region. The
member of this family from Synechocystis PCC 6803, CcmA,
was shown to be essential for carboxysome formation.
However, no other candidate for this enzyme is present
in that species, chorismate biosynthesis does occur,
other species having this protein lack carboxysomes but
appear to make chorismate, and a requirement of CcmA for
carboxysome formation does not prohibit a role in
chorismate biosynthesis [Amino acid biosynthesis,
Aromatic amino acid family].
Length = 260
Score = 27.7 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 50 TINWSDVTWLKTITKLPIVL-------KGILTAEDAKIGVEMGASAIMVSNH 94
T++ S V LK T LPI++ + L AK + GA +M+ H
Sbjct: 180 TLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVH 231
>gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial protein Rv2277c and
similar proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in uncharacterized bacterial protein Rv2277c and
similar proteins. Members in this subfamily are
bacterial homologous of mammalian GDE4, a transmembrane
protein whose cellular function has not yet been
elucidated.
Length = 263
Score = 27.3 bits (61), Expect = 5.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSN 93
V + +K+ IVL GI TA+D ++ +GA A+MV +
Sbjct: 222 VDCFRRNSKVKIVLFGINTADDYRLAKCLGADAVMVDS 259
>gnl|CDD|188630 cd00408, DHDPS-like, Dihydrodipicolinate synthase family.
Dihydrodipicolinate synthase family. A member of the
class I aldolases, which use an active-site lysine which
stabilizes a reaction intermediate via Schiff base
formation, and have TIM beta/alpha barrel fold. The
dihydrodipicolinate synthase family comprises several
pyruvate-dependent class I aldolases that use the same
catalytic step to catalyze different reactions in
different pathways and includes such proteins as
N-acetylneuraminate lyase, MosA protein,
5-keto-4-deoxy-glucarate dehydratase,
trans-o-hydroxybenzylidenepyruvate hydratase-aldolase,
trans-2'-carboxybenzalpyruvate hydratase-aldolase, and
2-keto-3-deoxy- gluconate aldolase. The family is also
referred to as the N-acetylneuraminate lyase (NAL)
family.
Length = 281
Score = 27.5 bits (62), Expect = 5.3
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALP----EIAKAVGHKVDVY---LDG 126
E A+ E GA ++V Y S E + +A A V +Y
Sbjct: 81 AIELARHAEEAGADGVLVVPPY-----YNKPSQEGIVAHFKAVADASDLPVILYNIPGRT 135
Query: 127 GVRYGTDVFKALA 139
GV + LA
Sbjct: 136 GVDLSPETIARLA 148
>gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide
ribonucleotide (ProFAR) isomerase [Amino acid transport
and metabolism].
Length = 241
Score = 27.2 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 106 IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+EA+ EI +A V V + GG+R DV L G V +G
Sbjct: 64 LEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIG 104
>gnl|CDD|188632 cd00452, KDPG_aldolase, KDPG and KHG aldolase. KDPG and KHG
aldolase. This family belongs to the class I adolases
whose reaction mechanism involves Schiff base formation
between a substrate carbonyl and lysine residue in the
active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG)
aldolase, is best known for its role in the
Entner-Doudoroff pathway of bacteria, where it catalyzes
the reversible cleavage of KDPG to pyruvate and
glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate
(KHG) aldolase, which has enzymatic specificity toward
glyoxylate, forming KHG in the presence of pyruvate, and
is capable of regulating glyoxylate levels in the
glyoxylate bypass, an alternate pathway when bacteria
are grown on acetate carbon sources.
Length = 190
Score = 26.7 bits (60), Expect = 6.8
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 72 ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
+LT E A + GA I+ LD PE+ KA ++ + L GV
Sbjct: 63 VLTPEQADAAIAAGAQFIVSPG-----LD---------PEVVKA-ANRAGIPLLPGVATP 107
Query: 132 TDVFKALALGAKMV 145
T++ +AL LGA +V
Sbjct: 108 TEIMQALELGADIV 121
>gnl|CDD|225431 COG2876, AroA, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism].
Length = 286
Score = 26.9 bits (60), Expect = 6.8
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 50 TINWSDVTWLKTITKLPIVL-------KGILTAEDAKIGVEMGASAIMVSNH-------- 94
T++ S V LK T LP+++ + L AK + GA +M+ H
Sbjct: 200 TLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALS 259
Query: 95 -GGRQLDYV--PASIEALPEIAKAVGH 118
+QL ++ L +A A+G
Sbjct: 260 DAKQQLTPEEFEELVKELRALADALGR 286
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 26.7 bits (59), Expect = 7.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 102 VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
V S+ A+ E+ + V V G+ G D A LGA+ V +
Sbjct: 156 VHGSVRAVKEVNE----SVRVLCGAGISTGEDAELAAQLGAEGVLLA 198
>gnl|CDD|237142 PRK12570, PRK12570, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 296
Score = 27.0 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 102 VPASIEA-LPEIAKAVGHKVDVYLDGG 127
VP ++E LP+IA+AV V + GG
Sbjct: 33 VPLAVEKVLPQIAQAVDKIVAAFKKGG 59
>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme
that is involved in the formation of the thiazole moiety
of thiamin pyrophosphate, an essential ubiquitous
cofactor that plays an important role in carbohydrate
and amino acid metabolism. ThiG catalyzes the formation
of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP)
and dehydroglycine, with the help of the sulfur carrier
protein ThiS that carries the sulfur needed for thiazole
assembly on its carboxy terminus (ThiS-COSH).
Length = 248
Score = 26.7 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 KLPIVLK-GILTAEDAKIGVEMGASAIMV 91
+P+++ GI T DA +E+GA A+++
Sbjct: 175 DVPVIVDAGIGTPSDAAQAMELGADAVLL 203
>gnl|CDD|240083 cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole
carboxamide ribonucleotide (ProFAR) isomerase catalyzes
the fourth step in histidine biosynthesis, an
isomerisation of the aminoaldose moiety of ProFAR to the
aminoketose of PRFAR
(N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-
phospho-ribosyl)-4-imidazolecarboxamide). In bacteria
and archaea, ProFAR isomerase is encoded by the HisA
gene.
Length = 234
Score = 26.7 bits (60), Expect = 7.2
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 75 AEDAKIGVEMGASAIMV------SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128
E AK E GA + V L+ IE EI KAVG V V GG+
Sbjct: 32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLEL----IE---EIVKAVGIPVQV--GGGI 82
Query: 129 RYGTDVFKALALGAKMVFVG 148
R D+ + L LG V +G
Sbjct: 83 RSLEDIERLLDLGVSRVIIG 102
>gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy
production and conversion].
Length = 257
Score = 26.7 bits (59), Expect = 7.3
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
A A G KV V+ V D+ L G + P L
Sbjct: 213 AHAAGLKVHVW---TVNEEDDIRLLLEAGVDGLITDFPDL 249
>gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD)
FMN-binding domain. DHPD catalyzes the first step in
pyrimidine degradation: the NADPH-dependent reduction of
uracil and thymine to the corresponding
5,6-dihydropyrimidines. DHPD contains two FAD, two FMN,
and eight [4Fe-4S] clusters, arranged in two electron
transfer chains that pass the dimer interface twice. Two
of the Fe-S clusters show a hitherto unobserved
coordination involving a glutamine residue.
Length = 299
Score = 26.9 bits (60), Expect = 7.4
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 33/121 (27%)
Query: 58 WLKTITKLPIVLKGILTA------EDAKIGVEMGASAIMVSN------------------ 93
W++ K+P++ K LT E A+ E GA + N
Sbjct: 162 WVREAVKIPVIAK--LTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPG 219
Query: 94 ------HGGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
+GG V P ++ A+ +IA+A + + GG+ D + L LGA +V
Sbjct: 220 VEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279
Query: 147 V 147
V
Sbjct: 280 V 280
>gnl|CDD|165216 PHA02889, PHA02889, hypothetical protein; Provisional.
Length = 241
Score = 26.9 bits (59), Expect = 7.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 6 MKSSLVCLVLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINW 53
M S++ LV+ + +F K S L +++ ++ TS E I W
Sbjct: 1 MNRSIIILVICSNINHSFPCKRSILDENGEANIIICPSTSI--ECIKW 46
>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed.
Length = 250
Score = 26.6 bits (60), Expect = 8.7
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 64 KLPIVLK-GILTAEDAKIGVEMGASAIMV 91
+P+++ GI T DA +E+GA A+++
Sbjct: 175 DVPVIVDAGIGTPSDAAQAMELGADAVLL 203
>gnl|CDD|235761 PRK06266, PRK06266, transcription initiation factor E subunit
alpha; Validated.
Length = 178
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 48 DETINWSDVTWLKTITKLPIVLK 70
DE NW TW + KLP ++K
Sbjct: 73 DEETNWYTYTWKPELEKLPEIIK 95
>gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share
three conserved carboxylate ligands for the essential
divalent metal ion (usually Mg2+), two aspartates and a
glutamate, and conserved catalytic residues, a
Lys-X-Lys motif and a conserved histidine-aspartate
dyad. Members of the MR subgroup are mandelate racemase,
D-glucarate/L-idarate dehydratase (GlucD),
D-altronate/D-mannonate dehydratase , D-galactonate
dehydratase (GalD) , D-gluconate dehydratase (GlcD), and
L-rhamnonate dehydratase (RhamD).
Length = 357
Score = 26.8 bits (60), Expect = 9.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 74 TAEDAKIGVEMGASAI-MVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGT 132
AE+AK V G +A+ + + + + + + +AVG VD+ +D R+
Sbjct: 143 LAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRW-- 200
Query: 133 DVFKALALGAKM 144
D+ +A+ L +
Sbjct: 201 DLAEAIRLARAL 212
>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol
kinase-like proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of proteobacterial glycerol kinase (GK)-like
proteins, including the glycerol kinase from Pseudomonas
aeruginosa. Most bacteria, such as Escherichia coli,
take up glycerol passively by facilitated diffusion. In
contrast, P. aeruginosa may also utilize a binding
protein-dependent active transport system to mediate
glycerol transportation. The glycerol kinase
subsequently phosphorylates the intracellular glycerol
to glycerol 3-phosphate (G3P). GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 470
Score = 26.7 bits (59), Expect = 9.2
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 25/105 (23%)
Query: 71 GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV-- 128
G DAKI GA A+ ++ G + P S LP +A +G LDGGV
Sbjct: 234 GCRQPGDAKITFGTGAFALAIT---GEVIPRAPGS-GLLPTVAWQIGEPPVYALDGGVYD 289
Query: 129 ---------RYG--------TDVFKALALGAKMVFVGRPALWGLA 156
R G A+ + FV PAL GLA
Sbjct: 290 AAAAVEWAKRLGLFSDFEELAAFPAPPAIARGLAFV--PALSGLA 332
>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus). Members of this
family catalyze the reduction of the 5,6-double bond of
a uridine residue on tRNA. Dihydrouridine modification
of tRNA is widely observed in prokaryotes and
eukaryotes, and also in some archae. Most
dihydrouridines are found in the D loop of t-RNAs. The
role of dihydrouridine in tRNA is currently unknown, but
may increase conformational flexibility of the tRNA. It
is likely that different family members have different
substrate specificities, which may overlap. Dus 1 from
Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus
2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active
as a single subunit, requiring NADPH or NADH, and is
stimulated by the presence of FAD. Some family members
may be targeted to the mitochondria and even have a role
in mitochondria.
Length = 309
Score = 26.5 bits (59), Expect = 9.3
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 23/97 (23%)
Query: 73 LTAEDAKIGVEMGASAI----------MVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV 122
L AE AK+ ++GA I + G L P + +I KAV VD+
Sbjct: 67 LLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVA---QIVKAVVKAVDI 123
Query: 123 YLDGGVRYGTD---------VFKALALGAKMVFV-GR 149
+ +R G D + GA+ + V GR
Sbjct: 124 PVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGR 160
>gnl|CDD|223212 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid
transport and metabolism].
Length = 254
Score = 26.4 bits (59), Expect = 9.9
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133
E+ + +++GA I ++N R L + +E ++A + V + + G+ D
Sbjct: 165 NEEELERALKLGAKIIGINN---RDLTTLEVDLETTEKLAPLIPKDVILISESGISTPED 221
Query: 134 VFKALALGAKMVFVG 148
V + GA VG
Sbjct: 222 VRRLAKAGADAFLVG 236
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,135,425
Number of extensions: 949809
Number of successful extensions: 1143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 121
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)