RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16780
(202 letters)
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 291 bits (748), Expect = 2e-99
Identities = 93/178 (52%), Positives = 131/178 (73%)
Query: 20 LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G + ++ S L +Y+ Q+D +++W DV WL+TIT LPI++KG++TAEDA+
Sbjct: 181 LKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDAR 240
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
+ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR GTDVFKALA
Sbjct: 241 LAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 300
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
LGA VF+GRP ++ LA G++GV+KVL ++ +EF+ +ALSGC S+ EI R + +
Sbjct: 301 LGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 358
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 291 bits (748), Expect = 3e-99
Identities = 97/185 (52%), Positives = 123/185 (66%), Gaps = 3/185 (1%)
Query: 20 LANFSG---KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAE 76
+ NF S N D S L AY+ +D +I+W D+ WL+ +T LPIV KGIL +
Sbjct: 205 MKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGD 264
Query: 77 DAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFK 136
DA+ V+ G + I+VSNHG RQLD VPA+I+ LPEI +AV KV+V+LDGGVR GTDV K
Sbjct: 265 DAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLK 324
Query: 137 ALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVH 196
ALALGAK VFVGRP +WGLA G+ GV+ VL+IL EF A+ALSGC +V I + +V
Sbjct: 325 ALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 384
Query: 197 ETYYS 201
Sbjct: 385 NPLAV 389
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 282 bits (724), Expect = 6e-96
Identities = 61/174 (35%), Positives = 90/174 (51%)
Query: 27 LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
+ + + L I + I+ D+ + + LP+ +KGI EDA + ++ GA
Sbjct: 192 VQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRGA 251
Query: 87 SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
S I VSNHG RQL P S + LP IA+ V +V + D GVR G V KALA GA +V
Sbjct: 252 SGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 311
Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYY 200
+GRP L+GLA G G VLD + + + L+G +V +++ + Y
Sbjct: 312 LGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKGLDLFDNPYG 365
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 280 bits (719), Expect = 6e-95
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 2/182 (1%)
Query: 20 LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G + ++ A ++ Q+D + NW + WL+ + +++KG+L+AEDA
Sbjct: 181 LKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDAD 240
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
+ GA +++SNHGGRQLD + +E L + G V +D G R G+D+ KALA
Sbjct: 241 RCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTG--KPVLIDSGFRRGSDIVKALA 298
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETY 199
LGA+ V +GR L+GLA G++GV +VL +L + D+ LA GC + + + + +E
Sbjct: 299 LGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEGV 358
Query: 200 YS 201
+
Sbjct: 359 TN 360
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 274 bits (702), Expect = 7e-93
Identities = 83/168 (49%), Positives = 115/168 (68%)
Query: 27 LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
+ L + + + W+D++ L++IT+LPI+LKGILT EDA++ ++
Sbjct: 180 KAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNV 239
Query: 87 SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
I+VSNHGGRQLD V ASI+AL E+ AV K++VY+DGGVR GTDV KALALGA+ +F
Sbjct: 240 QGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIF 299
Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
+GRP LWGLA G+ GV++VLDIL E + + LSGC SV EI +++
Sbjct: 300 LGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 278 bits (712), Expect = 3e-92
Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Query: 26 KLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMG 85
K + +N +S ++ +D ++ W D+ LK TKLPIV+KG+ ED E+G
Sbjct: 305 KAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIG 364
Query: 86 ASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALAL 140
S +++SNHGGRQLD+ A IE L E + K++V++DGGVR GTDV KAL L
Sbjct: 365 VSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCL 424
Query: 141 GAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHETYY 200
GAK V +GRP L+ + G++GV K ++IL +E + ++ L G TS+ E++ +++ T
Sbjct: 425 GAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLK 484
Query: 201 SK 202
++
Sbjct: 485 AR 486
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 164 bits (418), Expect = 4e-50
Identities = 31/169 (18%), Positives = 70/169 (41%), Gaps = 20/169 (11%)
Query: 46 QLDETINWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYV 102
+ + + + +P+++K + ++ A E GA+A+ + +GG +
Sbjct: 160 DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKI 219
Query: 103 P----------------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
++ +L EI + GG++ DV KA+ALGA
Sbjct: 220 ENLRRQRQISFFNSWGISTAASLAEIRSEFP-ASTMIASGGLQDALDVAKAIALGASCTG 278
Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
+ L L SG+ G+ + + +++ E + + G ++ ++Q+ +V
Sbjct: 279 MAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLV 327
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 152 bits (386), Expect = 3e-45
Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 53 WSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS---- 105
++ +LP +LK + + + + +++G + +S GG Y+
Sbjct: 195 KKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGN 254
Query: 106 -----------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
+ L A+ + KV++ GG+R+ D+ KAL LGAK V + R L
Sbjct: 255 RSYLNQWGQTTAQVLLN-AQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLEL 313
Query: 155 LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQR 191
+ V +++ + + C ++ E++
Sbjct: 314 VEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRN 350
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 138 bits (350), Expect = 6e-40
Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 28/169 (16%)
Query: 53 WSDVTWLKTITKLPIV---LKGILTAEDAKIGVEMGASAIMVSNHGGR------------ 97
+ + +PI+ ++ E AK+ G S GG
Sbjct: 176 LEKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIR 235
Query: 98 -----------QLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
LD+ + ++ E+ +V + GG+R G D KA+ALGA +
Sbjct: 236 RGNWKAESAKNFLDWGVPTAASIMEVRYSVP-DSFLVGSGGIRSGLDAAKAIALGADIAG 294
Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
+ P L GK + + +I E A+ L+G V +++ +V
Sbjct: 295 MALPVLKSAIE-GKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIV 342
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 123 bits (309), Expect = 3e-34
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 23/164 (14%)
Query: 52 NWSDVTWLKTITKLPIVLKGI---LTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS--- 105
+ P+++K + L+ E A ++ +A+ V+ GG V
Sbjct: 169 GLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRF 228
Query: 106 ---------------IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
A+ E+ + V + + GGV GTD KALALGA ++ V RP
Sbjct: 229 GEVRHPELCEIGIPTARAILEV-REVLPHLPLVASGGVYTGTDGAKALALGADLLAVARP 287
Query: 151 ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
L + V + + E AL G + E + +
Sbjct: 288 LLRPALEGAE-RVAAWIGDYLEELRTALFAIGARNPKEARGRVE 330
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 48.9 bits (116), Expect = 2e-07
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126
+ + + +D +GA I + G D L + G V +G
Sbjct: 131 LTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDAG--CRVIAEG 188
Query: 127 GVRYGTDVFKALALGAKMVFVG 148
+A+ GA V VG
Sbjct: 189 RYNSPALAAEAIRYGAWAVTVG 210
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 48.4 bits (115), Expect = 3e-07
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
++ I + G T +DAK V++G + + +L + + + L ++ + +++
Sbjct: 111 EIQIEIYGNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELS 170
Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
+ GG+ ++ + K GR
Sbjct: 171 ITGGIVPED-IYLFEGIKTKTFIAGRA 196
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 47.2 bits (113), Expect = 8e-07
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDYV 102
+ +K+ + +++ ++T E K +E GA I +V+ G V
Sbjct: 137 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG------V 190
Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
P I A+ + + + + DGG+RY D+ KALA+GA V +G
Sbjct: 191 P-QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 46.8 bits (112), Expect = 1e-06
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 21/107 (19%)
Query: 56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDYV 102
+ +K+ + +++ ++T E K +E GA I +V+ G V
Sbjct: 176 LKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVG------V 229
Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
P I A+ + + + + DGG+RY D+ KALA+GA V +G
Sbjct: 230 P-QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 45.7 bits (108), Expect = 2e-06
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 47 LDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG----GRQLDYV 102
LDE +++ ++ I T E+AK +G I + HG +
Sbjct: 106 LDELVSYIRTHAPNVE-----IMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLY 160
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ L ++ ++V V +G V + + LG VG
Sbjct: 161 QNDFQFLKDVLQSVD--AKVIAEGNVITPDMYKRVMDLGVHCSVVG 204
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 44.4 bits (105), Expect = 7e-06
Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 49 ETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMV-----SNHGGRQLDYVP 103
++ +P++ G+ A + GA I+V +N ++ V
Sbjct: 196 TGGEALNLKEFIGSLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGME-VS 254
Query: 104 ASIEALPEIAKA--------VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
A+ ++A A G V + DG + DV KA+A GA V +G P
Sbjct: 255 -MATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSP 308
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 42.7 bits (100), Expect = 2e-05
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQLDYVPASIEALPEIAKAVGHKVDVYLD 125
+ + T + + G I + G + V + + +++ A V +
Sbjct: 131 LAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---GCRVIAE 187
Query: 126 GGVRYGTDVFKALALGAKMVFVG 148
G A+ GA V VG
Sbjct: 188 GRYNTPALAANAIEHGAWAVTVG 210
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 42.6 bits (100), Expect = 2e-05
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 56 VTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA 115
+ +K +++ I T ++ + + G + + G + + I
Sbjct: 124 IRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS-RQEAGPDVALIEAL 182
Query: 116 VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ V +G + + K LG + VG
Sbjct: 183 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 42.9 bits (102), Expect = 2e-05
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 56 VTWLKTI--TKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLD 100
+ W++ K+ + I+ E + + GA I G Q
Sbjct: 274 IGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQAT 333
Query: 101 YVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
V + + + G + V DGG+ Y + ALA+GA + +GR
Sbjct: 334 AVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGR 382
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 42.6 bits (101), Expect = 3e-05
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 56 VTWLKTI-TKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ + L I+ + TAE A+ +E G SA+ +V+ G
Sbjct: 140 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVG------ 193
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ + A + + V DGG+R+ D+ KA+A GA V VG
Sbjct: 194 VP-QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 41.8 bits (99), Expect = 6e-05
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ +K L ++ I+T E A + +GA + +V+ G
Sbjct: 185 IKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVG------ 238
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ ++ +A + + DGG+R+ DV KA+A GA V +G
Sbjct: 239 VP-QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 41.2 bits (96), Expect = 6e-05
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
+ I L G T E A+ + G ++ Q V + I + V
Sbjct: 108 DVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT 167
Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
+ GG+ + + + GR
Sbjct: 168 VTGGLALED-LPLFKGIPIHVFIAGRS 193
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 41.3 bits (98), Expect = 9e-05
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ +K LP+V + T E + ++ GA A+ +V+ G
Sbjct: 269 LEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVG------ 322
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP + A+ E ++ + V + DGG+RY D+ KALA GA+ V VG
Sbjct: 323 VP-QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 40.7 bits (95), Expect = 1e-04
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 60 KTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119
++ + L G T + A+ ++ G S + L + L ++ K +
Sbjct: 109 PDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIEMG 168
Query: 120 VDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
V + GG+ T + + GR
Sbjct: 169 FRVSVTGGLSVDT-LKLFEGVDVFTFIAGRG 198
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 41.0 bits (97), Expect = 1e-04
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
V ++ L I+ + TAE K +E GA+ + +V+ G
Sbjct: 288 VKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVG------ 341
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP + A+ + A H + V DGG++Y D+ KALA GA +V +G
Sbjct: 342 VP-QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 40.9 bits (97), Expect = 1e-04
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 56 VTWLKTIT-KLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ + L I+ + TAE A+ +E G SA+ +V+ G
Sbjct: 263 IRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVG------ 316
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP I A+ + A + + V DGG+R+ D+ KA+A GA V VG
Sbjct: 317 VP-QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 40.5 bits (96), Expect = 2e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ ++ ++ I TAE A+ + G + +V+ G
Sbjct: 265 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVG------ 318
Query: 102 VPASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP + A+ + A + + DGG++Y D+ KALA G V +G
Sbjct: 319 VP-QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLG 365
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 39.5 bits (93), Expect = 3e-04
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ +K + + ++ + T E + GA A + + G
Sbjct: 140 IQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFG------ 193
Query: 102 VPAS-IEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ AL AKA + DGG+R DV K++ GA MV +G
Sbjct: 194 TGGWQLAALRWCAKAAS--KPIIADGGIRTNGDVAKSIRFGATMVMIG 239
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 39.0 bits (92), Expect = 6e-04
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 56 VTWLKTITKLPIVLKGILTAE--------DA-KIGVEMGASAI----MVSNHGGRQLDYV 102
+ ++ ++ I + DA K+G+ G +I +V+ G V
Sbjct: 260 MKEMRQKVDADFIVGNIANPKAVDDLTFADAVKVGI--GPGSICTTRIVAGVG------V 311
Query: 103 PASIEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
P I A+ +A + + V DGG+RY D+ KA+A GA V +G
Sbjct: 312 P-QITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 38.3 bits (90), Expect = 9e-04
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 26/110 (23%)
Query: 56 VTWLK-TITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHG-GRQLDYVPASI------- 106
V ++K L ++ ++TA AK ++ G + V G G SI
Sbjct: 287 VHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRV---GMG------CGSICITQEVM 337
Query: 107 -------EALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
A+ ++A+ V + DGG++ V KALALGA V +G
Sbjct: 338 ACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMG 387
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily;
structural genomics, predicted mandelate racemase, PSI;
2.02A {Rhodobacter sphaeroides}
Length = 401
Score = 37.7 bits (88), Expect = 0.002
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 74 TAEDAKIGVEMGASAI--MVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
T E A+ G +A+ G + I A + +G D+ +D G +G
Sbjct: 149 TLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMA---AREGLGPDGDLMVDVGQIFG 205
Query: 132 TDVFKALALGAKM 144
DV A A +
Sbjct: 206 EDVEAAAARLPTL 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 41/218 (18%)
Query: 3 IYWM----KSSLVCLVLSQY-LLANFSGK---LSQLSNTSDSSSLLAYITSQLDETINWS 54
I + K+ + V Y + K L+ L N + ++L + +L I+ +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLE-MLQKLLYQIDPN 212
Query: 55 DVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114
+ + + + + I + + + ++V L V +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-------LLNV-----QNAKAWN 260
Query: 115 AVGHKVDVYL---DGGVRYGTDVFKALALGAKMVFVGRPALWGLAHS-GKSGVRKVLDIL 170
A + L V TD L+ L KS + K LD
Sbjct: 261 AFNLSCKILLTTRFKQV---TDF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 171 INEF-DQA-----LALSGCTSVGEIQREMVVHETYYSK 202
+ + LS + E R+ + +
Sbjct: 315 PQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKH 349
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase,
potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB:
2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Length = 351
Score = 37.2 bits (87), Expect = 0.002
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 106 IEALPEIAKAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+ A+ E A A G K + DGG DV KA GA V +G
Sbjct: 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLG 252
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Length = 361
Score = 37.2 bits (87), Expect = 0.002
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 24/107 (22%)
Query: 56 VTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAI-------------MVSNHGGRQLDY 101
+ L+ + ++ G + T A GA I + + G
Sbjct: 132 LKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFG------ 185
Query: 102 VPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
VP + + + ++A + DGG++ D+ KALA GA V +G
Sbjct: 186 VP-MLTCIQDCSRA---DRSIVADGGIKTSGDIVKALAFGADFVMIG 228
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 32.9 bits (75), Expect = 0.044
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
++ + + + +E + ++ + G Q I+ L + K K +
Sbjct: 105 QVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRR-KARIA 163
Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
+ GG+ T V LG +V VG
Sbjct: 164 VAGGISSQT-VKDYALLGPDVVIVGSA 189
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 32.9 bits (75), Expect = 0.061
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG 162
P ++ + K + + + GGV G D F+ + GA MV +G L G
Sbjct: 259 PTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGT----ALHQEGPQI 314
Query: 163 VRKVLDILINEFDQALALSGCTSVGEI 189
+++ E + G ++ +
Sbjct: 315 FKRI----TKELXAIMTEKGYETLEDF 337
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 32.5 bits (75), Expect = 0.071
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 41/165 (24%)
Query: 56 VTWLKTITKLPIVLKGILT--------AEDAKIGVEMGASAIMVSNHGGRQL-------- 99
+ + T P+ +K L A+I + + + N G L
Sbjct: 150 LKEVFTFFTKPLGVK--LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAES 207
Query: 100 --------------DYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKM 144
Y+ P ++ + + ++ + GG+ G D F+ L GA M
Sbjct: 208 VVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATM 267
Query: 145 VFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEI 189
+ +G L G + ++ I E ++ + G S+ +
Sbjct: 268 LQIGT----ALHKEGPAIFDRI----IKELEEIMNQKGYQSIADF 304
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 32.6 bits (75), Expect = 0.076
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 30/119 (25%)
Query: 56 VTWLKTITKLPIVLKGILT------AEDAKIGVEMGASAIMVSN---------------- 93
V K ++K+P+ +K L+ AK GA + + N
Sbjct: 156 VKACKAVSKVPLYVK--LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPIL 213
Query: 94 ---HGGRQLDYV-PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
GG + P +++ + ++A+ V + + GGV DV + GA V VG
Sbjct: 214 ANITGGLSGPAIKPVALKLIHQVAQDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVG 270
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.10
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 10/35 (28%)
Query: 111 EIAKAVGHKVDVYLDGGVR-YGTDVFKALALGAKM 144
+ K L ++ Y D ALA+ A M
Sbjct: 21 ALKK---------LQASLKLYADDSAPALAIKATM 46
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 31.5 bits (71), Expect = 0.12
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
+ + L GI V + + + G + + L + V
Sbjct: 105 GVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKARVPFSV- 163
Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
GGV+ T + GA++ G
Sbjct: 164 -AGGVKVAT-IPAVQKAGAEVAVAGGA 188
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 31.1 bits (71), Expect = 0.17
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 74 TAEDAKIGVEMGASAIMVSN-----HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128
+ AK ++GA A++ H G+ + + ++A A+ + V GG+
Sbjct: 119 SVALAKRMEKIGADAVIAEGMEAGGHIGK----LTTMT-LVRQVATAI--SIPVIAAGGI 171
Query: 129 RYGTDVFKALALGAKMVFVG 148
G LGA+ V VG
Sbjct: 172 ADGEGAAAGFMLGAEAVQVG 191
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 30.8 bits (70), Expect = 0.24
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 74 TAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIA-----KAVGHKVDVYL-- 124
T E+A+ GA A++ GG Q + +S + I V VD+ +
Sbjct: 154 TPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA 213
Query: 125 DGGVRYGTDVFKALALGAKMVFVG 148
GG+ G + LA GA +G
Sbjct: 214 AGGIMRGGQIAAVLAAGADAAQLG 237
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 30.7 bits (70), Expect = 0.26
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 74 TAEDAKIGVEMGASAIMVSNH--GGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYG 131
A +G A+ + G + + LP A + +V + GG G
Sbjct: 127 AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL--RVPIIASGGFADG 184
Query: 132 TDVFKALALGAKMVFVG 148
+ ALALGA + +G
Sbjct: 185 RGLVAALALGADAINMG 201
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 30.3 bits (69), Expect = 0.37
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 74 TAEDAKIGVEMGASAIMVSN-----HGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGV 128
+ A++ GA A++ H G + + +++++V + V GG+
Sbjct: 133 SDSLARMVERAGADAVIAEGMESGGHIGEV-----TTFVLVNKVSRSV--NIPVIAAGGI 185
Query: 129 RYGTDVFKALALGAKMVFVG 148
G + A ALGA+ V +G
Sbjct: 186 ADGRGMAAAFALGAEAVQMG 205
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 29.8 bits (68), Expect = 0.41
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
++ E L E+ + +V++ GG+R + ALA G V VG AL
Sbjct: 60 GSNHELLAEVVGKLDVQVEL--SGGIRDDESLAAALATGCARVNVGTAAL 107
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 29.8 bits (68), Expect = 0.41
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPAL 152
+ + E+A+A+ KV++ GG+R + ALA G V +G AL
Sbjct: 61 GDNRALIAEVAQAMDIKVEL--SGGIRDDDTLAAALATGCTRVNLGTAAL 108
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 29.5 bits (65), Expect = 0.70
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAV 116
V + + ++ GA + + P AL EIA
Sbjct: 231 FVSGNVRSGRQVTEYLDSGADYVGFAG-----ALEQPDWRSALAEIAGRR 275
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 29.3 bits (66), Expect = 0.96
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 129 RYGTDVFKALALGAKMVFVGRPA 151
R G + F++ L K +
Sbjct: 30 RLGANAFESRFLLKKTNCLKGAK 52
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 63 TKLPIVL-KGILTAEDAKIGVEMGASAIMV 91
K+P+++ G+ TA DA I +E+G A+++
Sbjct: 186 AKVPVLVDAGVGTASDAAIAMELGCEAVLM 215
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 111 EIAKAVGHKVDVYLD--GGVRYGTDVFKALALGAKMVFVG 148
+ + VDV + GG ALA +++ +G
Sbjct: 223 VLKQEYPEGVDVVYESVGG-AMFDLAVDALATKGRLIVIG 261
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 28.7 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 59 LKTI---TKLPIVL-KGILTAEDAKIGVEMGASAIMV 91
L I K+P+++ GI + +DA +E+GA +++
Sbjct: 170 LSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLL 206
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 28.7 bits (65), Expect = 1.2
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 63 TKLPIVL-KGILTAEDAKIGVEMGASAIMV 91
+ P+V+ G+ A +E+G A++V
Sbjct: 177 SLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206
>3kts_A Glycerol uptake operon antiterminator regulatory; structural
genomics, PSI-2, protein structur initiative; HET: UNL;
2.75A {Listeria monocytogenes str}
Length = 192
Score = 28.5 bits (64), Expect = 1.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 56 VTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVSNH 94
V + +P++ G I T+E + GA A+ SN
Sbjct: 142 VQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNK 181
Score = 26.2 bits (58), Expect = 7.7
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 103 PASIEALP--------EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153
P IE LP ++ + + + V G + V + +A GA V LW
Sbjct: 128 PDCIELLPGIIPEQVQKMTQKLH--IPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW 184
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 28.3 bits (64), Expect = 1.3
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
L + + AL LA + + +R L + DQA+A G++ + V
Sbjct: 198 LNEEHIAHEPRALQLLARAAEGSLRDALSLT----DQAIASGD----GQVSTQAV 244
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 28.5 bits (64), Expect = 1.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 129 RYGTDVFKALALGAKMVFVGRPAL 152
RY +D+F+A LG + +
Sbjct: 31 RYNSDLFQARLLGKNFICMTGAEA 54
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.65A {Thermus
thermophilus} PDB: 2iss_A*
Length = 297
Score = 28.2 bits (62), Expect = 1.8
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE--------ALPE 111
+ KG + T E A I E GA A+M L+ VPA I + P+
Sbjct: 16 FAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMA-------LERVPADIRAQGGVARMSDPK 68
Query: 112 IAKAVGHKVDVYLDGGVRYGTDV 134
I K + V + + VR G V
Sbjct: 69 IIKEIMAAVSIPVMAKVRIGHFV 91
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 28.0 bits (63), Expect = 2.5
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 74 TAEDAKIGVEMGASAI-------MVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDG 126
K G M R +D A + I A G+ V+ LD
Sbjct: 129 VIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAE---IRSAFGNTVEFGLDF 185
Query: 127 GVRYGTDVFKALALGAKM 144
R A L ++
Sbjct: 186 HGRV--SAPMAKVLIKEL 201
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 27.8 bits (62), Expect = 2.7
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 99 LDYV--P-ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL 155
L+YV P A+++ L E+ + V V + D +R D + A V V + G
Sbjct: 152 LEYVEQPCATVDELAEVRRRVS--VPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLG- 208
Query: 156 AHSGKSGVRKVLDI 169
GVR L +
Sbjct: 209 ------GVRAALRL 216
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase,
pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium
berghei} PDB: 4adu_A* 4ads_A
Length = 297
Score = 27.7 bits (61), Expect = 2.8
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK 114
+LKG + E AKI + GA +M+ L+ +P+ + +A+
Sbjct: 16 WCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMI-------LENIPSELRNTDGVAR 63
Score = 27.4 bits (60), Expect = 3.2
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 76 EDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF 135
+ K + S + + A I+ + K V + GG+ D
Sbjct: 172 NEIKYLCSLDESEVYNFAKK------LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAA 225
Query: 136 KALALGAKMVFVG 148
+ LG VFVG
Sbjct: 226 MCMQLGMDGVFVG 238
>2lnv_A General secretion pathway protein C; transport protein; NMR
{Dickeya dadantii}
Length = 104
Score = 26.4 bits (58), Expect = 3.0
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 63 TKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDY 101
+ L + L G++ +D AI+ + Q
Sbjct: 22 STLNLSLTGVMAGDDDSRS-----IAIISKD--NEQFSR 53
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase;
2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Length = 305
Score = 27.5 bits (60), Expect = 3.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119
+ + KG ++ AE AKI E GA A+M L+ VPA I A +A+
Sbjct: 16 MAEMQKGGVIMDVINAEQAKIAEEAGAVAVMA-------LERVPADIRAAGGVARMADPT 68
Query: 120 V 120
+
Sbjct: 69 I 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 19/75 (25%)
Query: 140 LGAK-MVFVGRPALWGLAHSGKSG-VRKVLDILINEFDQ-----------ALALSGCTSV 186
L K + +V L K G +VL++ + EF+ A L
Sbjct: 60 LVGKFLGYVSS-----LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 187 GEIQREMVVHETYYS 201
++ + ++ + Y +
Sbjct: 115 TLVKTKELI-KNYIT 128
Score = 27.3 bits (60), Expect = 4.9
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 40/136 (29%)
Query: 37 SSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG 96
S LL + +++ + ++V++ A+D +I V G
Sbjct: 429 SHLLVPASDLINKDLVKNNVSF---------------NAKDIQIPVY--------DTFDG 465
Query: 97 RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA---LALGAKMVFVGRPALW 153
L + SI I + V + T FKA L G G L
Sbjct: 466 SDLRVLSGSI--SERIVDCIIRLP-VKWE-----TTTQFKATHILDFGPG----GASGLG 513
Query: 154 GLAHSGK--SGVRKVL 167
L H K +GVR ++
Sbjct: 514 VLTHRNKDGTGVRVIV 529
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 27.1 bits (61), Expect = 3.6
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 25/100 (25%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ +L E+ +A+ YL+G YG +++G P +
Sbjct: 235 YAPAA--SLVEMTEAILKDQRRVLPAIAYLEG--EYG----------YSDLYLGVPVI-- 278
Query: 155 LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
G +G+ K++++ + ++ SV + + +V
Sbjct: 279 ---LGGNGIEKIIELELLADEKEALDRSVESVRNVMKVLV 315
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 27.2 bits (61), Expect = 3.7
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 111 EIAKAVGHKVDVYLDG-GVRYGTDVFKALALGAKMVFVG 148
E+ + VD+ LD L + G
Sbjct: 200 EVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYG 238
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.5 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGA 142
H+V + DGG++ G D+ A LGA
Sbjct: 1063 HRVRLRTDGGLKTGRDIVIAAMLGA 1087
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 27.1 bits (59), Expect = 4.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 104 ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
E L E+ K V + GGV D + LG+ VFVG
Sbjct: 227 GLYEVLLEVKKLGRLPVVNFAAGGVATPADAALMMQLGSDGVFVG 271
Score = 25.9 bits (56), Expect = 9.2
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 65 LPIVLKG-----ILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHK 119
++K + E A+I E GA A+M L+ VPA I A +A+
Sbjct: 12 FAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMA-------LERVPADIRAAGGVARMSDPA 64
Query: 120 V 120
+
Sbjct: 65 L 65
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 27.1 bits (61), Expect = 4.3
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
+ PA+ A+ + + + + + Y+DG + G + V +G P
Sbjct: 230 FGPAA--AILNVVRCIVNNEKRLLTLSAYVDG--EFD---------GIRDVCIGVPVK-- 274
Query: 155 LAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193
G+ G+ +V+ I +++ + + + E+
Sbjct: 275 ---IGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 310
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 27.1 bits (61), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGA 142
+V + DGG++ G DV A +GA
Sbjct: 1098 DRVLLRADGGLKTGWDVVMAALMGA 1122
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 26.7 bits (58), Expect = 4.4
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 22/96 (22%)
Query: 49 ETINWSDVTWLKTITKL-PIVL-----KGILTAEDAK-------IGVEMGASAIMVSNHG 95
+T++ S + I + + + G + A IG++ + +
Sbjct: 8 KTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK 67
Query: 96 GRQ---------LDYVPASIEALPEIAKAVGHKVDV 122
+ + +V A+ E+LP K + + +
Sbjct: 68 IIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.7 bits (60), Expect = 4.8
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y P + A E+ +A+ Y DG YG +F+G P G
Sbjct: 225 YAPGA--AAAEMTEAILKDNKRILPCAAYCDG--EYG----------LDDLFIGVPVKLG 270
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
GV +V+++ ++ ++A
Sbjct: 271 -----AGGVEEVIEVDLDADEKAQ 289
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one
two-stranded beta-sheet, viral protein; NMR
{Enterobacteria phage lambda} SCOP: d.186.1.1 PDB:
2l6q_A 2l6r_A
Length = 68
Score = 25.4 bits (55), Expect = 4.9
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 75 AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEAL 109
A A + G V GR++++ S+ L
Sbjct: 10 ARAALHDLMTGKRVATVQ-KDGRRVEFTATSVSDL 43
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 26.7 bits (60), Expect = 5.1
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
PA+ A+ E+A++ L+G +YG +F G P +
Sbjct: 237 VAPAA--AIIEMAESYLKDLKKVLICSTLLEG--QYG----------HSDIFGGTPVV-- 280
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
G +GV +V+++ +N ++A
Sbjct: 281 ---LGANGVEQVIELQLNSEEKAK 301
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 26.7 bits (60), Expect = 5.1
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ + ++A++ V L G +YG K ++VG P +
Sbjct: 237 YAPAA--SAIQMAESYLKDKKRVLPVAAQLSG--QYG----------VKDMYVGVPTV-- 280
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
G +GV ++++I +++ ++A
Sbjct: 281 ---IGANGVERIIEIDLDKDEKAQ 301
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 26.7 bits (60), Expect = 5.6
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ + +A + + VY +G YG K +F+G PA+ G
Sbjct: 245 YAPAA--SAVAMATSFLNDEKRVIPCSVYCNG--EYG----------LKDMFIGLPAVIG 290
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
+G+ +V+++ +NE ++
Sbjct: 291 -----GAGIERVIELELNEEEKKQ 309
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 26.7 bits (60), Expect = 5.9
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
+ PA+ A ++A+A + YG K +++G P +
Sbjct: 234 FAPAA--AAVKMAEAYLKDKKAVVPCSAFCSN--HYG----------VKGIYMGVPTI-- 277
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
GK+GV +L++ + +Q L
Sbjct: 278 ---IGKNGVEDILELDLTPLEQKL 298
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 26.7 bits (60), Expect = 6.1
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ + +A+A YL G +Y +FVG P +
Sbjct: 244 YAPAA--SAVAMAQAYLKDSKSVLVCSTYLTG--QYN----------VNNLFVGVPVV-- 287
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
GK+G+ V+ + +++ +++L
Sbjct: 288 ---IGKNGIEDVVIVNLSDDEKSL 308
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 26.5 bits (59), Expect = 6.6
Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 2/53 (3%)
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS-IEALPEIAKAVGHKVDVYLD 125
G + G + + PA E + D
Sbjct: 149 MRAKVARHRAQGFKGHSI-KIGASEAEGGPALDAERITACLADRQPGEWYLAD 200
>3e2d_A Alkaline phosphatase; cold-adaptation, metalloenzyme, dimer,
psychrophilic bacteria, crystallography, hydrolase;
1.40A {Vibrio SP}
Length = 502
Score = 26.8 bits (59), Expect = 6.7
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 111 EIAK-AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDI 169
+IA + DV L GG+R+ + + K + RK
Sbjct: 134 QIASDMLATGADVMLSGGLRH----WIPKSTNDKGETYKQLEKLTQGDVYLKSKRKDDRN 189
Query: 170 LINEFDQA 177
L+ E ++
Sbjct: 190 LLTEAEKD 197
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 26.3 bits (59), Expect = 6.7
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 117 GHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
+D+ L+ + + LA G ++V++G
Sbjct: 187 WGGLDLVLEVRGKEVEESLGLLAHGGRLVYIG 218
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 26.3 bits (59), Expect = 6.8
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ A ++ +AV V YL G +YG ++ G P +
Sbjct: 227 YAPAA--ATAQMVEAVLKDKKRVMPVAAYLTG--QYG----------LNDIYFGVPVI-- 270
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
G GV K+L++ +NE + AL
Sbjct: 271 ---LGAGGVEKILELPLNEEEMAL 291
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel,
pyridoxal 5-phosphate synthase, PLP G3 SNO1,
biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces
cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Length = 291
Score = 26.2 bits (57), Expect = 7.0
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 33/139 (23%)
Query: 68 VLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEAL--------PEIAKAVGHK 119
V+ ++T E AKI + GA A+M L+ +PA + P++ K + +
Sbjct: 14 VIMDVVTPEQAKIAEKSGACAVMA-------LESIPADMRKSGKVCRMSDPKMIKDIMNS 66
Query: 120 VDVYLDGGVRYGTDVFKAL--ALGAKMV---FVGRPALWGLAHSGKSGVRKVLDILINEF 174
V + + VR G V + AL + V PA W H K +
Sbjct: 67 VSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADW-THHIEKDKFK---------- 115
Query: 175 DQALALSGCTSVGEIQREM 193
+ G +GE R +
Sbjct: 116 --VPFVCGAKDLGEALRRI 132
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 26.3 bits (59), Expect = 7.6
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 25/84 (29%)
Query: 101 YVPASIEALPEIAKAVGHK------VDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWG 154
Y PA+ L +A+ +YL G YG + PA+
Sbjct: 223 YGPAA--GLVLTVEAIKRDSKRIYPYSLYLQG--EYG----------YNDIVAEVPAV-- 266
Query: 155 LAHSGKSGVRKVLDILINEFDQAL 178
GKSG+ +++++ + E ++
Sbjct: 267 ---IGKSGIERIIELPLTEDEKRK 287
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 26.1 bits (58), Expect = 9.1
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 75 AEDAKIGVEMGASAI------MVSNHGGRQLD--YVPASIEALPEIAKAVGHKVDVYLDG 126
AE A V G +A+ + GG + S+E +I AVG K D+
Sbjct: 151 AESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGT 210
Query: 127 GVRYGTDVFKALA 139
++ T L
Sbjct: 211 HGQFTTAGAIRLG 223
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair,
transc regulation, transcription, structural genomics,
structural consortium, SGC; NMR {Homo sapiens}
Length = 122
Score = 25.3 bits (55), Expect = 9.2
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 88 AIMVSNHGGRQLDYVPASI-EALPEIAKAVGHKVDVYLDGG 127
AI V+N G Q+ ++ + AL I +++ + G
Sbjct: 48 AIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFG 88
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 26.1 bits (57), Expect = 9.9
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTD 133
+ + +GA + H +Y S+ +A+ +DV+ D +
Sbjct: 169 GEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSR 228
Query: 134 VFKALALGAKMVFVGRPALWGLAH 157
+ +A A +G +H
Sbjct: 229 FVETVAALAHHEGMGARVT--ASH 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,045,509
Number of extensions: 181002
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 125
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.7 bits)