RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16780
(202 letters)
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 151 bits (382), Expect = 2e-45
Identities = 93/178 (52%), Positives = 131/178 (73%)
Query: 20 LANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAK 79
L NF G + ++ S L +Y+ Q+D +++W DV WL+TIT LPI++KG++TAEDA+
Sbjct: 180 LKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDAR 239
Query: 80 IGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALA 139
+ V+ GA+ I+VSNHG RQLDYVPA+I AL E+ KA ++ V+LDGGVR GTDVFKALA
Sbjct: 240 LAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALA 299
Query: 140 LGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
LGA VF+GRP ++ LA G++GV+KVL ++ +EF+ +ALSGC S+ EI R + +
Sbjct: 300 LGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 146 bits (370), Expect = 1e-43
Identities = 85/168 (50%), Positives = 116/168 (69%)
Query: 27 LSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGA 86
L L + + S + W+D++ L++IT+LPI+LKGILT EDA++ ++
Sbjct: 180 LKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNV 239
Query: 87 SAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVF 146
I+VSNHGGRQLD V ASI+AL E+ AV K++VY+DGGVR GTDV KALALGA+ +F
Sbjct: 240 QGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIF 299
Query: 147 VGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMV 194
+GRP LWGLA G+ GV++VLDIL E + + LSGC SV EI +++
Sbjct: 300 LGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 144 bits (363), Expect = 5e-42
Identities = 70/186 (37%), Positives = 111/186 (59%), Gaps = 5/186 (2%)
Query: 14 VLSQYLLANFSGKLSQLSNTSDSSSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGIL 73
+ ++ K + +N +S ++ +D ++ W D+ LK TKLPIV+KG+
Sbjct: 196 MKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 255
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKA-----VGHKVDVYLDGGV 128
ED E+G S +++SNHGGRQLD+ A IE L E + K++V++DGGV
Sbjct: 256 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 315
Query: 129 RYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGE 188
R GTDV KAL LGAK V +GRP L+ + G++GV K ++IL +E + ++ L G TS+ E
Sbjct: 316 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 375
Query: 189 IQREMV 194
++ +++
Sbjct: 376 LKPDLL 381
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 138 bits (349), Expect = 2e-40
Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 37 SSLLAYITSQLDETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG 96
A ++ Q+D + NW + WL+ + +++KG+L+AEDA + GA +++SNHGG
Sbjct: 195 EMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGG 254
Query: 97 RQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLA 156
RQLD + +E L + V +D G R G+D+ KALALGA+ V +GR L+GLA
Sbjct: 255 RQLDCAISPMEVLAQSVAKT--GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA 312
Query: 157 HSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVVHE 197
G++GV +VL +L + D+ LA GC + + + + +E
Sbjct: 313 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 353
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 120 bits (302), Expect = 9e-34
Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 53 WSDVTWLKTITKLPIVLKGILT---AEDAKIGVEMGASAIMVSNHGGRQLDYVP------ 103
+ + + +P+++K + A E GA+A+ + +GG +
Sbjct: 147 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQR 206
Query: 104 ----------ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALW 153
++ +L EI + GG++ DV KA+ALGA + L
Sbjct: 207 QISFFNSWGISTAASLAEIRSEF-PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLK 265
Query: 154 GLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREMVV 195
L SG+ G+ + + +++ E + + G ++ ++Q+ +V
Sbjct: 266 ALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLV 307
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 108 bits (270), Expect = 3e-29
Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 21/163 (12%)
Query: 51 INWSDVTWLKTITKLPIVLKGILT---AEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE 107
+ P+++K + E A ++ +A+ V+ GG V +
Sbjct: 146 RGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVR 205
Query: 108 ALPEIAKA-----------------VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
V + + GGV GTD KALALGA ++ V RP
Sbjct: 206 FGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARP 265
Query: 151 ALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193
L G V + + E AL G + E + +
Sbjct: 266 LLRPAL-EGAERVAAWIGDYLEELRTALFAIGARNPKEARGRV 307
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 66.8 bits (162), Expect = 2e-14
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
S + +K +++ I T ++ + + G + + G A + + I
Sbjct: 118 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALI 176
Query: 113 AKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGR 149
+ V +G + + K LG + VG
Sbjct: 177 EALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGG 213
Score = 27.9 bits (61), Expect = 0.77
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 71 GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEAL 109
I + E+AK ++G + I+V R + IEAL
Sbjct: 191 KIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEAL 229
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 63.7 bits (154), Expect = 3e-13
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 53 WSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEI 112
V++++T ++ I T E+AK +G I + HG + +
Sbjct: 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQF 166
Query: 113 AKAVGHKVD--VYLDGGVRYGTDVFKALALGAKMVFVGR 149
K V VD V +G V + + LG VG
Sbjct: 167 LKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGG 205
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 48.0 bits (114), Expect = 3e-07
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 56 VTWLKTIT-KLPIVLK---GILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPAS------ 105
+ LK I + +K A + A I++S + G P +
Sbjct: 562 IYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSG-GTGASPQTSIKFAG 620
Query: 106 ---IEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL 155
L E+ + + H+V + DGG++ G D+ A LGA+ +G +L +
Sbjct: 621 LPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAM 678
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 45.3 bits (107), Expect = 2e-06
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 106 IEALPEIAKA-----VGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGL 155
+ E+ + + +V + DGG++ G DV A +GA+ G A+
Sbjct: 651 ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 705
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 38.8 bits (89), Expect = 2e-04
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 8/142 (5%)
Query: 48 DETINWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE 107
+ + + I E G P ++
Sbjct: 171 LVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230
Query: 108 ALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVL 167
+ + ++ + GG+ G D F+ L GA M+ +G L G + +
Sbjct: 231 NVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGT----ALHKEGPAIFDR-- 284
Query: 168 DILINEFDQALALSGCTSVGEI 189
+I E ++ + G S+ +
Sbjct: 285 --IIKELEEIMNQKGYQSIADF 304
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 33.6 bits (76), Expect = 0.008
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 64 KLPIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVY 123
+ I L G T E A+ + G ++ Q V + I + V
Sbjct: 106 DVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVT 165
Query: 124 LDGGVRYGTDVFKALALGAKMVFVGRP 150
+ GG+ + + + GR
Sbjct: 166 VTGGLALED-LPLFKGIPIHVFIAGRS 191
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 32.3 bits (73), Expect = 0.023
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 78 AKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKA 137
+I +E GA I S ++E + I + ++ V GG+R
Sbjct: 138 VEICIEAGADFIKTSTGFA----PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISM 193
Query: 138 LALGA 142
+ GA
Sbjct: 194 IEAGA 198
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 32.3 bits (73), Expect = 0.027
Identities = 16/77 (20%), Positives = 26/77 (33%)
Query: 66 PIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125
I+ L E+ + A A+ E + + VG ++ V
Sbjct: 155 VIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVGDEMGVKAS 214
Query: 126 GGVRYGTDVFKALALGA 142
GG+R D K + GA
Sbjct: 215 GGIRTFEDAVKMIMYGA 231
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 32.3 bits (72), Expect = 0.034
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG 162
P ++ A+ IA+A+ + GG+ + L GA ++ V + + +
Sbjct: 240 PIALRAVTTIARAL-PGFPILATGGIDSAESGLQFLHSGASVLQVCS----AVQNQDFTV 294
Query: 163 VRKVLDILINEFDQ 176
++ L
Sbjct: 295 IQDYCTGLKALLYL 308
Score = 29.6 bits (65), Expect = 0.26
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 58 WLKTITKLPIV-LKGILTAEDAKIGVEMGASAIMV 91
+ + PI+ GI +AE + GAS + V
Sbjct: 249 IARALPGFPILATGGIDSAESGLQFLHSGASVLQV 283
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 31.8 bits (71), Expect = 0.053
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG 162
S + + E+ ++ + GG+ G D + + GA + + L +G
Sbjct: 326 DISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYS----CLVFNGMKS 381
Query: 163 VRKVLDILINEFDQALALSGCTSVGEI 189
++ L + Q G ++ E
Sbjct: 382 AVQIKRELNHLLYQ----RGYYNLKEA 404
Score = 28.4 bits (62), Expect = 0.63
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 64 KLPIV-LKGILTAEDAKIGVEMGASAIMV 91
++PI+ GI + DA +E GAS +
Sbjct: 342 QIPIIASGGIFSGLDALEKIEAGASVCQL 370
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 31.5 bits (70), Expect = 0.055
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 118 HKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQA 177
+ + GGV DV + GA V VG K++D L DQ
Sbjct: 240 VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFV-----CPKIIDKLPELMDQ- 293
Query: 178 LALSGCTSVGEIQREM 193
S+ + +E+
Sbjct: 294 ---YRIESLESLIQEV 306
Score = 27.3 bits (59), Expect = 1.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 67 IVLKGILTAEDAKIGVEMGASAIMV 91
I + G+ A+D GASA+ V
Sbjct: 245 IGMGGVANAQDVLEMYMAGASAVAV 269
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
1314]}
Length = 365
Score = 31.2 bits (70), Expect = 0.071
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 56 VTWLKTITKLPIVLKG-ILTAEDAKIGVEMGASAIMVS------NHGGRQLDYVPASIEA 108
+ ++ ++ G I TAE A+ + G + V + A
Sbjct: 139 IAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTA 198
Query: 109 LPEIAK-AVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
+ + A A + + DGG++Y D+ KALA G V +G
Sbjct: 199 IYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSM 241
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 30.8 bits (69), Expect = 0.100
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 112 IAKAVGHKVDVY---LDGGVRYGTDVFKALALGAKMVFVGR 149
+AKAVG K D +D G D F ++G ++ + R
Sbjct: 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLER 118
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus
delbrueckii [TaxId: 1584]}
Length = 196
Score = 29.8 bits (66), Expect = 0.18
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 70 KGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAK--AVGHKVDVYLDGG 127
+GI T E + + ++ G + P A AV + +L
Sbjct: 1 QGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADK 60
Query: 128 VRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDIL 170
G+ F+ A +V +G+ A GK+ + L
Sbjct: 61 ELDGS--FEINDESADIVLIGQGAHASAPQVGKNSATFLALFL 101
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 29.9 bits (66), Expect = 0.21
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG 162
P ++ + + K+ GGV G + F + GA MV VG L G
Sbjct: 227 PTALANVNAFFRRCPDKLVFG-CGGVYSGEEAFLHILAGASMVQVGT----ALHDEGPII 281
Query: 163 VRKVLDILINEFDQALALSGCTSVGEI 189
+ L E + + G ++ E
Sbjct: 282 FAR----LNKELQEIMTNKGYKTLDEF 304
Score = 24.5 bits (52), Expect = 9.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 60 KTITKLPIVLKGILTAEDAKIGVEMGASAIMV 91
+ KL G+ + E+A + + GAS + V
Sbjct: 239 RCPDKLVFGCGGVYSGEEAFLHILAGASMVQV 270
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 29.6 bits (66), Expect = 0.22
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 67 IVLKGILTAEDAKIGVEM----GASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDV 122
I+ G + E+ E GA + S G AS+E + + + + V
Sbjct: 123 ILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG----PRGASLEDVALLVRVAQGRAQV 178
Query: 123 YLDGGVRYGTDVFKALALGA 142
GG+R + L GA
Sbjct: 179 KAAGGIRDRETALRMLKAGA 198
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 29.3 bits (66), Expect = 0.24
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 104 ASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
A +E L EI + V + GGV D + LGA VFVG
Sbjct: 174 APVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVG 218
Score = 25.9 bits (57), Expect = 3.6
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 74 TAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIE--------ALPEIAKAVGHKVDVYLD 125
AE AKI GA A+M L+ VPA I A P + + V + V + +
Sbjct: 10 NAEQAKIAEAAGAVAVMA-------LERVPADIRAAGGVARMADPTVIEEVMNAVSIPVM 62
Query: 126 GGVRYGTDV 134
VR G V
Sbjct: 63 AKVRIGHYV 71
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 29.6 bits (65), Expect = 0.25
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 129 RYGTDVFKALALGAKMVFVGRPAL 152
RY +D+F+A LG + +
Sbjct: 26 RYNSDLFQARLLGKNFICMTGAEA 49
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 29.3 bits (65), Expect = 0.26
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 60 KTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNHGG------RQLDYVPASIEALPEIA 113
LP+V + T E + ++ GA A+ V G + A+ E +
Sbjct: 135 ADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECS 194
Query: 114 KAV-GHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRP 150
+ + V + DGG+RY D+ KALA GA+ V VG
Sbjct: 195 EVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSI 232
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 28.7 bits (64), Expect = 0.37
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 111 EIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVG 148
KV V +D GV +D A+ LG + V +
Sbjct: 171 LRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMN 208
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 28.8 bits (63), Expect = 0.46
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 103 PASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSG 162
S E + ++ + ++ + GG+ + +A GA +V + G G
Sbjct: 273 LKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYS----GFIFKGPPL 328
Query: 163 VRKVLD 168
+++++
Sbjct: 329 IKEIVT 334
Score = 28.4 bits (62), Expect = 0.65
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 64 KLPIV-LKGILTAEDAKIGVEMGASAIMV 91
+LPI+ + GI + A+ + GAS + +
Sbjct: 289 RLPIIGVGGIDSVIAAREKIAAGASLVQI 317
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 28.4 bits (62), Expect = 0.62
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 52 NWSDVTWLKTITKLPIV-LKGILTAEDAKIGVEMGASAIMV 91
+ T ++PI+ + G+ + +DA + GAS + +
Sbjct: 286 QTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQL 326
Score = 27.6 bits (60), Expect = 1.1
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 126 GGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTS 185
GGV G D + + GA +V + L G V K + E + L G
Sbjct: 305 GGVSSGQDALEKIRAGASLVQLYT----ALTFWGPPVVGK----VKRELEALLKEQGFGG 356
Query: 186 VGEI 189
V +
Sbjct: 357 VTDA 360
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 27.9 bits (62), Expect = 0.77
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 78 AKIGVEMGASAIMV--SNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVF 135
A+ E+G AIM S G Q P ++ + KV V +D G+ D
Sbjct: 139 ARKLEELGVHAIMPGASPIGSGQGILNPLNLSFI-----IEQAKVPVIVDAGIGSPKDAA 193
Query: 136 KALALGAKMVFVG 148
A+ LGA V +
Sbjct: 194 YAMELGADGVLLN 206
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 27.5 bits (60), Expect = 0.90
Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 145 VFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQREM 193
VF+ P + G+ V++ + + + A ++ +IQ+++
Sbjct: 127 VFLSLPCILN-----ARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 170
>d7reqb2 c.23.6.1 (B:476-638) Methylmalonyl-CoA mutase beta subunit,
C-terminal domain {Propionibacterium freudenreichii,
subsp. shermanii [TaxId: 1744]}
Length = 163
Score = 27.2 bits (60), Expect = 1.2
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 66 PIVLKGILTAEDAKIGVEMGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLD 125
++G TAE + + GA + + +AL +YL
Sbjct: 67 TPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKA-----AGAKALYLS 121
Query: 126 GGVRYGTDVFKALALGAKMVF-VGRPAL 152
G + D +G +
Sbjct: 122 GAFKEFGDDAAEAEKLIDGRLFMGMDVV 149
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 27.0 bits (59), Expect = 1.5
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 112 IAKAVGHKVDVYLDGGVRYGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILI 171
I +A DVY+ G + Y A+ LG +V G + K + V L
Sbjct: 294 INQAKFKGADVYVTGDMYY-HVAHDAMMLGLNIVDPGH-------NVEKVMKQGVQKQLQ 345
Query: 172 NEFDQA 177
+ D
Sbjct: 346 EKVDAK 351
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 25.6 bits (56), Expect = 2.2
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 71 GILTAEDAKIGVEMGASAIMVSNHGGRQ-LDYVPASIEALPEIAKAVGHKVDVYLD---- 125
+ T++ +IG+ G +S G ++ + +P ++ L + +DV
Sbjct: 5 ALDTSQRIRIGLRKGEDLFEISYTGEKKHAEILPVVVKKLLDELDLKVKDLDVVGVGIGP 64
Query: 126 ---GGVRYGTDVFKALALGAKMVFVGRPALWGLAHS 158
G+R G L + + A S
Sbjct: 65 GGLTGLRVGIATVVGLVSPYDIPVAPLNSFEMTAKS 100
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 26.5 bits (57), Expect = 2.4
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 84 MGASAIMVSNHGGRQLDYVPASIEALPEIAKAVGHKVDVYLDGGVRYGTDVFKALALGAK 143
+ + G P I E+ K V +V V G+ G DV KA+ LG
Sbjct: 140 VAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTV 199
Query: 144 MVFVG 148
V +
Sbjct: 200 GVLLA 204
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 25.6 bits (55), Expect = 3.9
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 145 VFVGRPALWGLAHSGKSGVRKVLDILINEFDQAL 178
+F G P + G +GV +V+++ +N ++A
Sbjct: 122 IFGGTPVVLG-----ANGVEQVIELQLNSEEKAK 150
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 25.6 bits (55), Expect = 4.6
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 51 INWSDVTWLKTITKLPIVLKGILTAEDAKIGVEMGASAIMVS 92
+ +PIV G +T ++A ++ GA + +
Sbjct: 158 GVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMI 199
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 25.5 bits (55), Expect = 4.9
Identities = 9/50 (18%), Positives = 15/50 (30%)
Query: 130 YGTDVFKALALGAKMVFVGRPALWGLAHSGKSGVRKVLDILINEFDQALA 179
+V G ++ + AL KS LD ++ F
Sbjct: 192 IKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITNC 241
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 25.4 bits (55), Expect = 5.4
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 6/89 (6%)
Query: 60 KTITKLPIVLKGILTAEDAKIGVEMGASAIMVSNH------GGRQLDYVPASIEALPEIA 113
K V+K IL A + +
Sbjct: 127 KLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRLAS 186
Query: 114 KAVGHKVDVYLDGGVRYGTDVFKALALGA 142
A + V GG+R G D A+ GA
Sbjct: 187 LAKPLGMGVKASGGIRSGIDAVLAVGAGA 215
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 24.8 bits (53), Expect = 6.2
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 145 VFVGRPALWGLAHSGKSGVRKVLDILINEFDQALALSGCTSVGEIQRE 192
VF+ P + G+ ++ + + ++ T++ +IQ++
Sbjct: 124 VFLSLPCVLN-----DHGISNIVKMKLKPNEEQQLQKSATTLWDIQKD 166
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermus thermophilus [TaxId: 274]}
Length = 200
Score = 24.5 bits (52), Expect = 9.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 71 GILTAEDAKIGVEMGASAI 89
GI EDA + +GA A+
Sbjct: 7 GITRLEDALLAEALGAFAL 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,687
Number of extensions: 30006
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 55
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)