BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16785
         (1642 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor
            (Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At
            1.30 A Resolution
          Length = 309

 Score = 33.1 bits (74), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 21/123 (17%)

Query: 1534 GGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPI 1593
            GG  +       +K    +P FD      Y+K      Q+ F  R  P   + V  G  +
Sbjct: 1    GGGKATGTNEQSEKVVVNVPQFDADSAYLYVKN-----QVDFGPR-VPNTKEHVACGNYL 54

Query: 1594 ADRFQIDRDQHTQQCLNLV------------ISSYKPDYSK---LVSHWNCRPLAVKEEE 1638
            A + +    + T Q  +L+            I SYKP+  K   L +HW+ RP A  + +
Sbjct: 55   AGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPESKKRIALFAHWDTRPWADNDAD 114

Query: 1639 EAN 1641
            E N
Sbjct: 115  EKN 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,012,243
Number of Sequences: 62578
Number of extensions: 1641081
Number of successful extensions: 4460
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4422
Number of HSP's gapped (non-prelim): 56
length of query: 1642
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1530
effective length of database: 7,964,601
effective search space: 12185839530
effective search space used: 12185839530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)