Query psy16785
Match_columns 1642
No_of_seqs 34 out of 36
Neff 1.8
Searched_HMMs 46136
Date Fri Aug 16 22:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 95.6 8.9 0.00019 47.3 35.5 113 850-963 171-283 (1164)
2 COG1196 Smc Chromosome segrega 95.3 13 0.00029 47.9 33.6 26 1107-1133 595-620 (1163)
3 PF04012 PspA_IM30: PspA/IM30 95.2 0.56 1.2E-05 48.8 14.6 115 29-158 27-142 (221)
4 PRK02224 chromosome segregatio 94.9 0.7 1.5E-05 56.2 16.5 61 919-979 525-585 (880)
5 TIGR00606 rad50 rad50. This fa 94.8 19 0.00041 47.0 31.7 157 849-1010 471-651 (1311)
6 KOG4643|consensus 94.7 10 0.00022 49.0 25.5 63 1178-1251 483-545 (1195)
7 PRK10698 phage shock protein P 94.1 1 2.2E-05 48.5 13.7 109 36-158 28-143 (222)
8 PRK09039 hypothetical protein; 94.0 1.5 3.3E-05 49.7 15.5 136 30-169 44-185 (343)
9 PRK09039 hypothetical protein; 93.5 3.1 6.7E-05 47.3 16.8 63 916-978 115-177 (343)
10 PF00038 Filament: Intermediat 93.3 3.3 7.2E-05 44.8 16.0 104 848-963 24-128 (312)
11 KOG0161|consensus 93.0 36 0.00079 46.9 27.5 53 913-965 988-1040(1930)
12 TIGR02977 phageshock_pspA phag 93.0 3.2 6.9E-05 44.2 15.1 109 36-158 28-143 (219)
13 PRK06569 F0F1 ATP synthase sub 92.8 1.9 4.2E-05 45.2 12.8 53 2-68 18-76 (155)
14 TIGR02168 SMC_prok_B chromosom 91.3 45 0.00097 41.2 36.4 35 1175-1209 395-429 (1179)
15 PHA02562 46 endonuclease subun 91.1 10 0.00022 43.9 17.3 50 926-975 353-402 (562)
16 KOG1029|consensus 90.7 4.6 9.9E-05 50.9 14.6 74 936-1013 435-508 (1118)
17 PRK04863 mukB cell division pr 90.6 56 0.0012 44.1 25.2 94 99-192 354-453 (1486)
18 KOG4674|consensus 90.6 12 0.00025 50.9 19.0 127 869-1011 1197-1324(1822)
19 PF04012 PspA_IM30: PspA/IM30 90.3 15 0.00033 38.5 16.3 121 873-1000 53-174 (221)
20 PRK04863 mukB cell division pr 89.6 29 0.00062 46.7 21.4 247 749-1007 198-451 (1486)
21 PF15035 Rootletin: Ciliary ro 89.2 4.8 0.0001 42.9 11.8 95 849-961 23-125 (182)
22 KOG1029|consensus 89.1 6.8 0.00015 49.5 14.4 92 70-163 409-500 (1118)
23 PRK03918 chromosome segregatio 88.9 12 0.00027 45.6 16.5 41 117-157 196-236 (880)
24 PF09726 Macoilin: Transmembra 88.7 7.4 0.00016 48.4 14.6 102 869-973 462-580 (697)
25 TIGR02977 phageshock_pspA phag 88.4 32 0.00069 36.9 17.3 110 852-974 27-142 (219)
26 PF08614 ATG16: Autophagy prot 88.4 2.9 6.2E-05 43.7 9.4 70 934-1010 112-181 (194)
27 PF09789 DUF2353: Uncharacteri 88.3 12 0.00025 43.3 14.8 79 106-197 128-209 (319)
28 PF15619 Lebercilin: Ciliary p 88.1 22 0.00047 38.4 15.8 141 844-988 7-161 (194)
29 KOG0250|consensus 88.1 23 0.00049 46.3 18.3 142 22-167 222-383 (1074)
30 PF10174 Cast: RIM-binding pro 87.7 9.9 0.00021 48.0 14.9 89 847-936 411-505 (775)
31 KOG0995|consensus 87.6 28 0.00062 43.0 18.0 89 98-197 264-352 (581)
32 PRK03918 chromosome segregatio 87.6 17 0.00036 44.6 16.5 32 35-66 528-561 (880)
33 PRK11637 AmiB activator; Provi 87.6 12 0.00027 43.0 14.6 15 852-866 43-57 (428)
34 PF08317 Spc7: Spc7 kinetochor 87.4 16 0.00034 41.2 15.0 31 860-890 149-179 (325)
35 PF12128 DUF3584: Protein of u 87.2 41 0.00089 43.9 20.4 30 151-180 745-774 (1201)
36 TIGR02169 SMC_prok_A chromosom 87.0 91 0.002 38.9 33.5 11 1513-1523 1024-1034(1164)
37 PF09726 Macoilin: Transmembra 86.7 39 0.00085 42.4 19.1 68 117-195 541-612 (697)
38 PF08614 ATG16: Autophagy prot 86.7 4.2 9.1E-05 42.5 9.5 74 113-193 108-181 (194)
39 PRK11637 AmiB activator; Provi 86.5 51 0.0011 38.1 18.8 26 872-897 108-133 (428)
40 PRK04778 septation ring format 86.5 80 0.0017 38.2 21.0 126 885-1010 257-395 (569)
41 PRK11281 hypothetical protein; 85.8 67 0.0014 42.4 21.0 134 54-187 205-366 (1113)
42 COG1842 PspA Phage shock prote 85.8 14 0.00031 40.6 13.2 148 29-185 28-177 (225)
43 PRK05759 F0F1 ATP synthase sub 85.5 26 0.00055 35.0 13.8 61 2-70 12-72 (156)
44 PF08317 Spc7: Spc7 kinetochor 85.3 24 0.00052 39.8 15.1 34 41-74 147-180 (325)
45 PRK06231 F0F1 ATP synthase sub 85.3 24 0.00053 37.8 14.4 31 38-68 78-114 (205)
46 PF05911 DUF869: Plant protein 85.2 14 0.00031 46.6 14.4 138 837-978 605-759 (769)
47 PRK10698 phage shock protein P 85.1 30 0.00064 37.7 15.1 108 853-973 28-141 (222)
48 PRK09174 F0F1 ATP synthase sub 85.1 6.9 0.00015 42.0 10.3 32 38-69 83-120 (204)
49 PHA02562 46 endonuclease subun 84.6 34 0.00075 39.7 16.3 67 106-173 350-416 (562)
50 PF04156 IncA: IncA protein; 84.4 37 0.00079 34.8 14.7 56 927-982 133-188 (191)
51 PF00038 Filament: Intermediat 83.8 72 0.0016 34.9 18.7 115 859-978 187-302 (312)
52 PRK14472 F0F1 ATP synthase sub 82.8 19 0.00042 37.0 12.1 49 29-78 46-94 (175)
53 PF05837 CENP-H: Centromere pr 82.7 17 0.00037 35.6 11.0 38 956-993 55-92 (106)
54 PF15035 Rootletin: Ciliary ro 82.7 14 0.00031 39.4 11.3 95 32-143 23-124 (182)
55 KOG0963|consensus 82.0 1.4E+02 0.003 37.8 20.3 151 849-1010 121-301 (629)
56 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.0 59 0.0013 32.6 16.4 71 908-978 50-131 (132)
57 PF05837 CENP-H: Centromere pr 82.0 11 0.00023 37.0 9.3 37 140-176 56-92 (106)
58 PF09755 DUF2046: Uncharacteri 81.7 59 0.0013 37.9 16.3 58 942-1010 139-201 (310)
59 PF05911 DUF869: Plant protein 80.9 19 0.00041 45.6 13.2 119 37-160 622-758 (769)
60 PF04156 IncA: IncA protein; 80.8 49 0.0011 33.9 14.0 50 115-164 138-187 (191)
61 PF13166 AAA_13: AAA domain 80.8 86 0.0019 37.9 18.1 74 919-994 405-479 (712)
62 KOG4643|consensus 80.6 1.1E+02 0.0024 40.4 19.4 49 28-76 411-462 (1195)
63 PF09787 Golgin_A5: Golgin sub 80.4 1.2E+02 0.0026 36.4 19.0 45 851-895 157-204 (511)
64 TIGR01843 type_I_hlyD type I s 80.0 1E+02 0.0022 34.1 18.3 28 950-977 201-228 (423)
65 PF07888 CALCOCO1: Calcium bin 79.9 1.3E+02 0.0029 37.4 19.2 82 1236-1319 410-494 (546)
66 PRK11281 hypothetical protein; 79.6 1.5E+02 0.0032 39.5 20.6 79 926-1004 280-366 (1113)
67 PF12128 DUF3584: Protein of u 79.5 1.3E+02 0.0029 39.5 20.3 33 967-999 744-776 (1201)
68 PRK10884 SH3 domain-containing 79.4 19 0.00042 39.0 11.1 34 122-155 133-166 (206)
69 KOG0018|consensus 79.0 22 0.00049 46.3 13.1 124 28-156 290-444 (1141)
70 TIGR03321 alt_F1F0_F0_B altern 78.9 25 0.00055 38.1 11.9 38 33-71 37-74 (246)
71 PF07888 CALCOCO1: Calcium bin 78.5 1.4E+02 0.003 37.2 18.8 9 25-33 127-135 (546)
72 PF15070 GOLGA2L5: Putative go 78.1 61 0.0013 40.3 16.0 37 1160-1196 415-451 (617)
73 PF09789 DUF2353: Uncharacteri 78.0 91 0.002 36.4 16.4 71 934-1014 136-209 (319)
74 PRK13428 F0F1 ATP synthase sub 77.8 20 0.00043 42.3 11.5 63 3-73 10-72 (445)
75 PRK14473 F0F1 ATP synthase sub 77.8 86 0.0019 32.0 14.8 39 32-71 39-77 (164)
76 PRK13460 F0F1 ATP synthase sub 77.6 46 0.00099 34.4 12.7 67 3-77 25-91 (173)
77 PF00261 Tropomyosin: Tropomyo 77.4 1.1E+02 0.0024 33.1 16.2 44 932-975 184-227 (237)
78 CHL00019 atpF ATP synthase CF0 77.3 84 0.0018 32.8 14.6 45 33-78 56-100 (184)
79 PF00261 Tropomyosin: Tropomyo 76.9 37 0.00081 36.7 12.4 36 935-970 194-229 (237)
80 PRK13454 F0F1 ATP synthase sub 76.7 47 0.001 34.9 12.7 35 33-68 63-97 (181)
81 TIGR00606 rad50 rad50. This fa 76.6 2.7E+02 0.0058 37.0 29.6 42 1246-1287 1050-1091(1311)
82 KOG0243|consensus 76.2 76 0.0016 41.8 16.5 53 915-967 460-512 (1041)
83 KOG1962|consensus 75.7 25 0.00054 39.1 10.7 46 915-960 163-208 (216)
84 KOG1850|consensus 75.4 1.8E+02 0.004 34.6 18.7 137 848-986 108-249 (391)
85 PRK10884 SH3 domain-containing 75.3 34 0.00074 37.2 11.6 37 937-973 131-167 (206)
86 PRK13453 F0F1 ATP synthase sub 74.3 58 0.0013 33.8 12.5 41 32-73 49-89 (173)
87 COG4694 Uncharacterized protei 74.2 61 0.0013 40.5 14.3 141 831-1001 351-497 (758)
88 PF10186 Atg14: UV radiation r 74.0 1.3E+02 0.0028 32.1 15.7 21 1105-1126 192-212 (302)
89 PF13870 DUF4201: Domain of un 73.9 81 0.0018 32.6 13.4 115 853-977 17-137 (177)
90 COG1579 Zn-ribbon protein, pos 73.7 71 0.0015 36.0 13.7 72 905-979 29-102 (239)
91 PF13166 AAA_13: AAA domain 73.5 1.8E+02 0.004 35.2 18.1 84 92-177 395-479 (712)
92 PF10212 TTKRSYEDQ: Predicted 73.1 48 0.001 40.7 13.1 90 872-972 414-514 (518)
93 CHL00118 atpG ATP synthase CF0 72.8 67 0.0015 32.8 12.3 41 29-70 50-90 (156)
94 PF12072 DUF3552: Domain of un 72.6 1.4E+02 0.003 31.9 15.7 18 1-18 1-18 (201)
95 TIGR01843 type_I_hlyD type I s 72.5 1.6E+02 0.0035 32.6 16.3 31 132-162 200-230 (423)
96 PRK13729 conjugal transfer pil 71.9 9.2 0.0002 46.1 7.0 53 923-975 68-120 (475)
97 PF04859 DUF641: Plant protein 71.7 6.2 0.00013 40.7 4.8 77 879-973 53-129 (131)
98 TIGR02894 DNA_bind_RsfA transc 71.6 35 0.00076 36.7 10.3 38 54-94 54-93 (161)
99 PF10212 TTKRSYEDQ: Predicted 71.2 84 0.0018 38.8 14.5 99 52-155 411-514 (518)
100 PF05667 DUF812: Protein of un 70.8 41 0.00089 41.6 12.1 92 919-1011 323-414 (594)
101 smart00787 Spc7 Spc7 kinetocho 70.8 1.1E+02 0.0024 35.2 14.8 33 41-73 142-174 (312)
102 PF12718 Tropomyosin_1: Tropom 70.1 26 0.00056 36.1 8.8 80 926-1005 9-90 (143)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.4 1.3E+02 0.0028 30.2 15.0 30 132-161 102-131 (132)
104 KOG4674|consensus 69.2 2E+02 0.0044 40.1 18.4 163 80-243 1210-1382(1822)
105 PRK04406 hypothetical protein; 69.0 20 0.00044 33.8 7.2 50 935-984 8-57 (75)
106 PF10805 DUF2730: Protein of u 69.0 35 0.00075 33.6 9.0 50 930-979 41-92 (106)
107 PRK13461 F0F1 ATP synthase sub 69.0 1.4E+02 0.003 30.4 14.1 26 53-78 56-81 (159)
108 COG1842 PspA Phage shock prote 68.7 1.7E+02 0.0036 32.6 15.0 121 874-1001 55-176 (225)
109 PF15619 Lebercilin: Ciliary p 68.6 1.5E+02 0.0033 32.1 14.4 40 132-171 122-161 (194)
110 KOG0994|consensus 68.5 4.4E+02 0.0095 36.0 22.4 98 913-1010 1594-1705(1758)
111 PRK13729 conjugal transfer pil 68.4 12 0.00026 45.2 6.9 51 108-158 70-120 (475)
112 PRK06569 F0F1 ATP synthase sub 68.3 1E+02 0.0022 32.9 12.7 17 869-885 60-76 (155)
113 KOG0977|consensus 68.0 1.9E+02 0.0042 36.0 16.7 129 856-988 70-198 (546)
114 PF10498 IFT57: Intra-flagella 68.0 1.3E+02 0.0028 35.4 14.7 22 957-978 333-354 (359)
115 PRK04406 hypothetical protein; 67.9 22 0.00048 33.6 7.2 50 118-167 8-57 (75)
116 PRK06568 F0F1 ATP synthase sub 67.4 1.1E+02 0.0023 32.5 12.6 37 37-73 33-75 (154)
117 PF07798 DUF1640: Protein of u 67.1 1.3E+02 0.0029 31.5 13.3 30 906-935 76-105 (177)
118 PF00430 ATP-synt_B: ATP synth 67.0 50 0.0011 31.5 9.5 59 3-69 8-66 (132)
119 KOG0980|consensus 66.7 1.8E+02 0.004 38.1 16.5 92 871-963 428-519 (980)
120 PRK01156 chromosome segregatio 66.6 2.5E+02 0.0055 35.3 17.8 18 1441-1458 874-891 (895)
121 PRK04778 septation ring format 66.6 3.1E+02 0.0067 33.5 25.1 98 100-197 289-399 (569)
122 PF05278 PEARLI-4: Arabidopsis 66.5 1.1E+02 0.0024 35.1 13.5 108 844-976 144-252 (269)
123 smart00787 Spc7 Spc7 kinetocho 66.0 1.6E+02 0.0034 34.0 14.7 11 1001-1011 277-287 (312)
124 COG2900 SlyX Uncharacterized p 65.9 5 0.00011 38.3 2.6 38 1190-1227 11-48 (72)
125 PF10267 Tmemb_cc2: Predicted 65.6 1.1E+02 0.0024 36.5 13.8 94 848-966 218-312 (395)
126 KOG0161|consensus 65.5 5.8E+02 0.012 36.3 35.0 150 847-1010 843-1001(1930)
127 PF04102 SlyX: SlyX; InterPro 65.5 18 0.00038 33.2 5.9 50 936-985 2-51 (69)
128 KOG0250|consensus 65.1 4.7E+02 0.01 35.1 34.9 104 874-981 277-380 (1074)
129 KOG1962|consensus 65.0 59 0.0013 36.3 10.7 53 95-147 153-205 (216)
130 PRK10328 DNA binding protein, 64.9 47 0.001 34.4 9.4 15 875-889 3-17 (134)
131 KOG0962|consensus 64.7 1.3E+02 0.0028 40.6 15.2 66 36-101 796-870 (1294)
132 PF06160 EzrA: Septation ring 64.6 3.4E+02 0.0073 33.3 21.3 196 849-1061 320-542 (560)
133 PF05667 DUF812: Protein of un 64.2 68 0.0015 39.7 12.2 93 104-197 325-417 (594)
134 PRK08476 F0F1 ATP synthase sub 64.2 1.4E+02 0.0031 30.3 12.6 16 53-68 58-73 (141)
135 PRK07352 F0F1 ATP synthase sub 63.8 1.9E+02 0.004 30.0 14.7 37 37-73 48-90 (174)
136 KOG0018|consensus 63.7 85 0.0018 41.5 13.2 116 851-972 319-443 (1141)
137 PF10473 CENP-F_leu_zip: Leuci 63.5 70 0.0015 33.6 10.4 44 935-978 21-64 (140)
138 PRK10929 putative mechanosensi 63.3 5E+02 0.011 34.9 20.0 128 869-1004 210-346 (1109)
139 PRK02793 phi X174 lysis protei 63.3 29 0.00064 32.4 7.0 51 934-984 4-54 (72)
140 COG1340 Uncharacterized archae 63.2 1.6E+02 0.0035 34.3 14.0 24 27-50 64-87 (294)
141 TIGR03007 pepcterm_ChnLen poly 63.1 2.4E+02 0.0053 32.9 15.8 26 842-867 161-186 (498)
142 PF04102 SlyX: SlyX; InterPro 63.0 24 0.00053 32.4 6.3 50 119-168 2-51 (69)
143 KOG0804|consensus 62.9 1.5E+02 0.0031 36.5 14.1 60 99-161 388-447 (493)
144 PRK14471 F0F1 ATP synthase sub 62.9 1.8E+02 0.004 29.7 14.8 37 33-70 40-76 (164)
145 COG4026 Uncharacterized protei 62.9 1.4E+02 0.0031 34.1 13.2 89 78-171 115-206 (290)
146 PF09738 DUF2051: Double stran 62.8 1.2E+02 0.0027 35.0 13.1 86 851-976 79-164 (302)
147 KOG0995|consensus 62.6 4.1E+02 0.0089 33.6 24.5 78 922-1010 271-348 (581)
148 PRK14474 F0F1 ATP synthase sub 62.6 2.1E+02 0.0046 31.8 14.5 37 33-70 37-73 (250)
149 PF10153 DUF2361: Uncharacteri 62.4 1.7E+02 0.0037 29.9 12.6 31 854-884 2-34 (114)
150 PF15066 CAGE1: Cancer-associa 62.2 76 0.0017 38.9 11.7 106 1171-1286 381-507 (527)
151 cd07627 BAR_Vps5p The Bin/Amph 61.6 1.4E+02 0.0029 32.1 12.5 119 822-961 46-173 (216)
152 PRK10929 putative mechanosensi 61.5 2.4E+02 0.0053 37.6 16.8 64 119-195 213-276 (1109)
153 PRK02793 phi X174 lysis protei 61.3 27 0.00058 32.7 6.4 51 117-167 4-54 (72)
154 PF10153 DUF2361: Uncharacteri 61.1 1.8E+02 0.0039 29.8 12.5 32 36-67 1-34 (114)
155 TIGR01000 bacteriocin_acc bact 61.0 2.7E+02 0.0059 32.6 15.7 20 874-893 182-201 (457)
156 PF10211 Ax_dynein_light: Axon 61.0 2.3E+02 0.005 30.5 13.9 19 54-75 88-106 (189)
157 PF10473 CENP-F_leu_zip: Leuci 60.2 85 0.0019 32.9 10.4 84 110-193 13-99 (140)
158 PF15397 DUF4618: Domain of un 60.2 3E+02 0.0066 31.6 15.3 55 117-171 182-237 (258)
159 PRK11519 tyrosine kinase; Prov 59.9 1E+02 0.0022 38.2 12.8 27 841-867 266-292 (719)
160 PRK12704 phosphodiesterase; Pr 59.7 2.3E+02 0.005 34.6 15.3 51 199-256 168-218 (520)
161 PF15397 DUF4618: Domain of un 59.7 3.2E+02 0.007 31.4 17.1 59 935-993 183-247 (258)
162 KOG0933|consensus 59.5 3.8E+02 0.0081 36.0 17.5 99 906-1009 784-882 (1174)
163 PRK07353 F0F1 ATP synthase sub 59.4 86 0.0019 30.9 9.9 41 29-70 33-73 (140)
164 PRK09173 F0F1 ATP synthase sub 59.4 2.1E+02 0.0045 29.1 15.1 31 38-68 32-68 (159)
165 KOG0982|consensus 59.2 2.9E+02 0.0063 34.0 15.6 137 830-976 193-342 (502)
166 KOG1853|consensus 59.1 2.7E+02 0.0059 32.5 14.6 30 862-891 36-66 (333)
167 PRK04325 hypothetical protein; 58.7 30 0.00065 32.5 6.2 49 935-983 6-54 (74)
168 TIGR02168 SMC_prok_B chromosom 58.6 4.6E+02 0.0099 32.8 35.3 40 1171-1210 384-423 (1179)
169 PF05278 PEARLI-4: Arabidopsis 58.5 1.9E+02 0.0041 33.4 13.4 53 36-89 145-200 (269)
170 PRK02119 hypothetical protein; 58.4 33 0.00071 32.2 6.4 49 934-982 5-53 (73)
171 COG3883 Uncharacterized protei 58.3 53 0.0011 37.5 9.2 26 1175-1200 164-189 (265)
172 TIGR01144 ATP_synt_b ATP synth 58.3 2E+02 0.0043 28.6 12.7 59 2-68 3-61 (147)
173 COG3883 Uncharacterized protei 58.2 3.5E+02 0.0075 31.3 16.3 20 880-899 93-112 (265)
174 COG4372 Uncharacterized protei 58.1 2.1E+02 0.0045 34.9 14.0 42 933-974 139-180 (499)
175 PRK00295 hypothetical protein; 57.8 31 0.00067 32.0 6.1 45 936-980 3-47 (68)
176 KOG4593|consensus 57.7 4.7E+02 0.01 33.8 17.5 123 870-1013 189-318 (716)
177 PF15254 CCDC14: Coiled-coil d 57.7 2.7E+02 0.0059 36.2 15.7 121 843-976 432-553 (861)
178 KOG0239|consensus 57.4 2.5E+02 0.0054 35.6 15.4 85 100-195 227-311 (670)
179 KOG1899|consensus 57.1 2.6E+02 0.0056 35.8 15.1 42 830-871 113-154 (861)
180 PF10146 zf-C4H2: Zinc finger- 56.5 1.8E+02 0.004 32.4 12.7 15 851-865 3-17 (230)
181 PF05529 Bap31: B-cell recepto 56.4 60 0.0013 33.8 8.7 32 945-976 154-185 (192)
182 PF04484 DUF566: Family of unk 56.2 2.9E+02 0.0063 32.0 14.6 92 935-1030 184-306 (311)
183 PRK04325 hypothetical protein; 56.0 37 0.00079 31.9 6.3 49 118-166 6-54 (74)
184 KOG4466|consensus 56.0 69 0.0015 37.1 9.6 59 27-88 30-88 (291)
185 PRK02224 chromosome segregatio 55.9 5.1E+02 0.011 32.5 31.7 6 1623-1628 849-854 (880)
186 PRK00846 hypothetical protein; 55.9 35 0.00075 32.9 6.2 52 117-168 9-60 (77)
187 PF05529 Bap31: B-cell recepto 55.8 61 0.0013 33.8 8.6 32 932-963 155-186 (192)
188 COG4026 Uncharacterized protei 55.5 1.1E+02 0.0024 34.9 10.9 69 917-985 135-203 (290)
189 PRK10947 global DNA-binding tr 55.1 87 0.0019 32.6 9.4 15 875-889 3-17 (135)
190 PRK00846 hypothetical protein; 55.1 47 0.001 32.1 7.0 52 934-985 9-60 (77)
191 KOG2991|consensus 55.1 1.2E+02 0.0027 35.1 11.3 88 885-979 218-305 (330)
192 PF04111 APG6: Autophagy prote 55.0 1.6E+02 0.0034 33.8 12.3 11 1183-1193 247-257 (314)
193 KOG0996|consensus 54.8 3.1E+02 0.0068 37.0 15.9 62 912-974 517-578 (1293)
194 PRK14475 F0F1 ATP synthase sub 54.8 2.6E+02 0.0057 28.9 14.6 32 38-69 40-77 (167)
195 PF10805 DUF2730: Protein of u 54.7 74 0.0016 31.4 8.4 51 114-164 42-94 (106)
196 PF14073 Cep57_CLD: Centrosome 54.4 1.3E+02 0.0029 32.9 11.0 61 914-974 103-163 (178)
197 PF11559 ADIP: Afadin- and alp 54.3 2.5E+02 0.0053 28.4 13.3 47 916-962 79-125 (151)
198 KOG0979|consensus 54.1 4.2E+02 0.0091 35.4 16.7 57 830-886 155-221 (1072)
199 PF10168 Nup88: Nuclear pore c 54.0 3.7E+02 0.0081 34.3 16.2 46 844-896 546-591 (717)
200 KOG0980|consensus 53.9 3.4E+02 0.0074 35.8 15.8 77 72-149 446-522 (980)
201 PF09728 Taxilin: Myosin-like 53.8 4E+02 0.0087 30.7 18.1 139 36-182 111-252 (309)
202 PRK00295 hypothetical protein; 53.7 39 0.00085 31.3 6.1 47 119-165 3-49 (68)
203 TIGR03007 pepcterm_ChnLen poly 53.6 2.7E+02 0.0059 32.5 14.1 25 848-872 253-277 (498)
204 PRK13455 F0F1 ATP synthase sub 53.5 2.9E+02 0.0062 28.9 14.3 31 38-68 57-93 (184)
205 KOG0982|consensus 53.4 2.9E+02 0.0063 34.0 14.4 115 32-159 222-342 (502)
206 PF08580 KAR9: Yeast cortical 53.4 1.6E+02 0.0036 37.1 13.1 79 36-114 203-282 (683)
207 PF13851 GAS: Growth-arrest sp 53.3 3.3E+02 0.0072 29.6 17.0 25 843-868 29-53 (201)
208 PRK00736 hypothetical protein; 53.3 52 0.0011 30.5 6.7 49 936-984 3-51 (68)
209 TIGR01005 eps_transp_fam exopo 53.2 5.3E+02 0.011 32.1 17.1 24 844-867 196-219 (754)
210 PF15254 CCDC14: Coiled-coil d 52.7 2.5E+02 0.0055 36.5 14.3 47 113-159 507-553 (861)
211 KOG0946|consensus 52.6 1.3E+02 0.0029 39.0 12.0 72 932-1010 679-753 (970)
212 PRK02119 hypothetical protein; 52.3 46 0.001 31.3 6.4 50 117-166 5-54 (73)
213 PF04111 APG6: Autophagy prote 52.2 56 0.0012 37.2 8.3 87 1165-1265 49-135 (314)
214 cd07664 BAR_SNX2 The Bin/Amphi 51.8 2.5E+02 0.0055 31.2 12.8 100 849-959 83-187 (234)
215 KOG4673|consensus 51.7 4.4E+02 0.0095 34.2 15.9 33 27-59 582-614 (961)
216 PF05701 WEMBL: Weak chloropla 51.5 5.3E+02 0.012 31.4 19.3 63 916-978 287-349 (522)
217 KOG0933|consensus 51.3 4E+02 0.0086 35.8 15.9 40 39-78 190-239 (1174)
218 PF05701 WEMBL: Weak chloropla 51.1 3.7E+02 0.0079 32.7 15.0 119 850-983 289-410 (522)
219 KOG4807|consensus 51.0 1.1E+02 0.0024 37.0 10.5 92 66-165 362-458 (593)
220 PF08826 DMPK_coil: DMPK coile 51.0 85 0.0018 29.2 7.7 49 909-958 11-59 (61)
221 PRK12704 phosphodiesterase; Pr 50.9 2.9E+02 0.0064 33.8 14.3 18 1503-1520 445-462 (520)
222 TIGR01005 eps_transp_fam exopo 50.6 5.9E+02 0.013 31.7 18.6 46 121-166 288-333 (754)
223 KOG3850|consensus 50.5 4E+02 0.0088 32.5 14.8 131 829-992 254-394 (455)
224 PF05266 DUF724: Protein of un 50.4 1.4E+02 0.0031 32.3 10.5 23 119-141 157-179 (190)
225 PF13514 AAA_27: AAA domain 50.4 7.2E+02 0.016 32.6 18.9 40 946-985 890-929 (1111)
226 KOG0976|consensus 50.3 6.1E+02 0.013 33.6 16.9 54 930-983 350-404 (1265)
227 PF09730 BicD: Microtubule-ass 50.2 3.4E+02 0.0073 34.9 15.0 111 33-158 28-144 (717)
228 PF04859 DUF641: Plant protein 50.1 24 0.00051 36.6 4.5 49 108-156 81-129 (131)
229 COG1579 Zn-ribbon protein, pos 50.0 4.1E+02 0.0088 30.3 14.1 37 941-977 92-128 (239)
230 PF10211 Ax_dynein_light: Axon 50.0 3.6E+02 0.0078 29.0 14.2 114 855-975 69-186 (189)
231 KOG0971|consensus 49.8 6E+02 0.013 34.0 16.9 111 1188-1300 672-831 (1243)
232 COG0711 AtpF F0F1-type ATP syn 49.8 3.2E+02 0.007 28.5 13.1 58 2-73 14-77 (161)
233 TIGR03017 EpsF chain length de 49.8 4.4E+02 0.0096 30.3 14.8 21 176-196 344-364 (444)
234 KOG4438|consensus 49.6 5.1E+02 0.011 32.0 15.5 202 919-1202 143-359 (446)
235 KOG0977|consensus 49.6 5.7E+02 0.012 32.2 16.4 114 54-171 85-198 (546)
236 KOG0249|consensus 49.4 2.5E+02 0.0053 36.4 13.4 96 856-951 135-236 (916)
237 PF09755 DUF2046: Uncharacteri 49.1 4.8E+02 0.01 30.9 14.8 65 118-195 139-203 (310)
238 PF05266 DUF724: Protein of un 49.1 2.2E+02 0.0049 30.9 11.7 48 117-164 127-174 (190)
239 KOG0996|consensus 49.0 4E+02 0.0086 36.2 15.5 129 847-975 403-565 (1293)
240 KOG0964|consensus 49.0 3.1E+02 0.0067 36.6 14.4 155 847-1012 326-502 (1200)
241 PRK10328 DNA binding protein, 48.6 88 0.0019 32.6 8.3 26 58-89 3-28 (134)
242 PRK00736 hypothetical protein; 48.6 67 0.0015 29.8 6.7 49 119-167 3-51 (68)
243 KOG0964|consensus 48.5 8.5E+02 0.018 32.9 18.9 150 837-996 736-910 (1200)
244 KOG0999|consensus 48.5 72 0.0016 39.8 8.7 91 1192-1282 48-160 (772)
245 KOG0804|consensus 48.4 3.1E+02 0.0067 33.9 13.6 24 953-976 422-445 (493)
246 PF15290 Syntaphilin: Golgi-lo 48.0 2.1E+02 0.0045 33.6 11.7 36 835-870 54-89 (305)
247 PF10186 Atg14: UV radiation r 48.0 3.7E+02 0.0081 28.7 16.8 23 226-249 194-216 (302)
248 TIGR03319 YmdA_YtgF conserved 47.6 3.6E+02 0.0077 33.1 14.2 19 1503-1521 439-457 (514)
249 PF02403 Seryl_tRNA_N: Seryl-t 47.4 1.4E+02 0.003 28.6 8.8 14 883-896 28-41 (108)
250 PF06810 Phage_GP20: Phage min 47.1 1.7E+02 0.0036 30.8 10.1 63 936-999 39-105 (155)
251 TIGR02338 gimC_beta prefoldin, 46.9 2.1E+02 0.0046 28.0 10.2 30 119-148 72-101 (110)
252 KOG0612|consensus 46.7 6.9E+02 0.015 34.2 17.2 87 109-195 576-665 (1317)
253 PF05010 TACC: Transforming ac 46.6 4.5E+02 0.0098 29.2 15.3 34 35-72 79-112 (207)
254 COG4942 Membrane-bound metallo 46.6 6.4E+02 0.014 30.9 18.6 41 848-888 65-108 (420)
255 PF12761 End3: Actin cytoskele 46.5 85 0.0018 34.7 8.2 86 848-958 102-194 (195)
256 PF00170 bZIP_1: bZIP transcri 46.5 1.6E+02 0.0036 26.1 8.6 35 117-151 29-63 (64)
257 PF11932 DUF3450: Protein of u 46.5 4.3E+02 0.0093 28.9 14.1 42 934-975 66-107 (251)
258 PF09325 Vps5: Vps5 C terminal 46.3 3.7E+02 0.008 28.1 13.2 101 850-960 86-192 (236)
259 TIGR03321 alt_F1F0_F0_B altern 46.1 3.1E+02 0.0068 30.0 12.4 35 853-888 40-74 (246)
260 KOG0239|consensus 45.4 4.5E+02 0.0098 33.4 15.0 84 917-1011 227-310 (670)
261 PF15294 Leu_zip: Leucine zipp 44.7 2.6E+02 0.0056 32.4 11.9 113 41-160 32-171 (278)
262 PF11559 ADIP: Afadin- and alp 44.5 3.5E+02 0.0076 27.3 11.8 35 931-965 73-107 (151)
263 PF09728 Taxilin: Myosin-like 44.2 5.6E+02 0.012 29.6 18.3 145 845-998 103-251 (309)
264 TIGR00634 recN DNA repair prot 43.8 6.8E+02 0.015 30.5 20.1 76 931-1010 266-341 (563)
265 cd00632 Prefoldin_beta Prefold 43.7 3.1E+02 0.0067 26.5 10.7 27 119-145 75-101 (105)
266 PF06785 UPF0242: Uncharacteri 43.6 6E+02 0.013 30.8 14.6 129 2-159 44-172 (401)
267 PF08826 DMPK_coil: DMPK coile 43.5 1.4E+02 0.0031 27.8 8.0 42 105-146 16-57 (61)
268 PF08647 BRE1: BRE1 E3 ubiquit 43.5 1.7E+02 0.0037 28.4 8.9 45 938-982 24-68 (96)
269 PF00769 ERM: Ezrin/radixin/mo 43.4 4.9E+02 0.011 29.1 13.4 26 121-146 89-114 (246)
270 PF09730 BicD: Microtubule-ass 43.0 5.3E+02 0.012 33.3 15.2 58 915-979 81-141 (717)
271 PF04880 NUDE_C: NUDE protein, 41.9 28 0.0006 37.3 3.7 17 904-920 8-24 (166)
272 PF00170 bZIP_1: bZIP transcri 41.7 2.1E+02 0.0046 25.5 8.5 33 935-967 30-62 (64)
273 PRK09841 cryptic autophosphory 41.5 2.6E+02 0.0056 35.0 12.2 27 841-867 266-292 (726)
274 PF04508 Pox_A_type_inc: Viral 41.4 27 0.00058 27.7 2.6 21 1237-1257 2-22 (23)
275 PF05622 HOOK: HOOK protein; 41.0 9 0.0002 47.0 0.0 27 877-903 314-341 (713)
276 PF13851 GAS: Growth-arrest sp 40.8 2.7E+02 0.0058 30.2 10.8 102 1176-1281 30-131 (201)
277 COG5185 HEC1 Protein involved 40.8 8.5E+02 0.018 30.7 15.9 120 50-193 253-384 (622)
278 KOG4466|consensus 40.8 3.6E+02 0.0079 31.6 12.2 48 853-903 39-86 (291)
279 KOG2891|consensus 40.7 4.7E+02 0.01 30.9 13.1 46 57-102 334-379 (445)
280 PF09731 Mitofilin: Mitochondr 40.6 7.4E+02 0.016 29.9 19.1 18 328-345 556-573 (582)
281 KOG1656|consensus 40.5 6.1E+02 0.013 28.9 15.6 57 855-911 23-79 (221)
282 PF10168 Nup88: Nuclear pore c 40.1 2.5E+02 0.0055 35.7 11.9 19 288-306 72-90 (717)
283 KOG0978|consensus 39.8 3.7E+02 0.0081 34.6 13.1 117 1105-1226 171-304 (698)
284 KOG0796|consensus 39.8 3.5E+02 0.0077 32.0 12.1 108 865-983 54-180 (319)
285 KOG0810|consensus 39.6 3.2E+02 0.0069 31.7 11.6 114 35-166 92-223 (297)
286 PF07889 DUF1664: Protein of u 39.6 2.7E+02 0.0058 29.1 10.0 66 917-985 50-115 (126)
287 PRK08475 F0F1 ATP synthase sub 39.4 4.6E+02 0.01 27.5 11.9 35 33-68 54-88 (167)
288 PF12709 Kinetocho_Slk19: Cent 39.2 4.1E+02 0.0089 26.6 11.4 36 119-154 47-82 (87)
289 PF04849 HAP1_N: HAP1 N-termin 39.1 7.2E+02 0.016 29.4 14.6 60 915-974 218-277 (306)
290 PF07106 TBPIP: Tat binding pr 38.7 2E+02 0.0043 29.7 9.0 140 1104-1285 16-166 (169)
291 PF12325 TMF_TATA_bd: TATA ele 38.6 4.6E+02 0.0099 27.1 11.4 57 111-167 58-114 (120)
292 PRK11519 tyrosine kinase; Prov 38.5 5E+02 0.011 32.5 14.0 21 298-318 504-524 (719)
293 KOG0612|consensus 38.5 1.3E+03 0.027 32.0 18.6 19 431-449 213-231 (1317)
294 KOG0946|consensus 38.1 3.3E+02 0.0071 35.8 12.3 89 101-192 661-752 (970)
295 TIGR02680 conserved hypothetic 38.1 6.6E+02 0.014 34.1 15.7 42 917-958 283-324 (1353)
296 COG4942 Membrane-bound metallo 38.0 8.5E+02 0.018 29.9 17.2 68 937-1007 86-160 (420)
297 KOG0962|consensus 38.0 8.5E+02 0.018 33.5 16.3 125 838-969 781-916 (1294)
298 PRK10947 global DNA-binding tr 37.7 1.6E+02 0.0035 30.7 8.2 26 58-89 3-28 (135)
299 PF04880 NUDE_C: NUDE protein, 37.2 52 0.0011 35.3 4.8 36 938-977 14-49 (166)
300 PF00435 Spectrin: Spectrin re 36.6 2.3E+02 0.0049 24.6 7.9 57 925-984 35-91 (105)
301 PF02841 GBP_C: Guanylate-bind 36.5 4.1E+02 0.0088 29.8 11.7 6 703-708 40-45 (297)
302 COG2433 Uncharacterized conser 36.4 4E+02 0.0086 34.1 12.4 14 38-51 358-371 (652)
303 COG2900 SlyX Uncharacterized p 36.2 1.4E+02 0.003 29.1 6.8 46 935-980 5-50 (72)
304 PRK10361 DNA recombination pro 36.1 9.4E+02 0.02 29.9 19.3 38 852-890 39-76 (475)
305 PF07889 DUF1664: Protein of u 35.8 1.2E+02 0.0026 31.5 6.9 53 116-168 63-115 (126)
306 PF10146 zf-C4H2: Zinc finger- 35.8 1.8E+02 0.004 32.4 8.8 63 919-988 13-75 (230)
307 PRK03598 putative efflux pump 35.7 5.8E+02 0.013 28.4 12.6 56 917-974 145-200 (331)
308 PF10205 KLRAQ: Predicted coil 35.5 3.2E+02 0.0069 28.0 9.5 51 907-957 23-73 (102)
309 KOG0796|consensus 35.1 5.1E+02 0.011 30.8 12.4 78 53-134 63-142 (319)
310 PRK05431 seryl-tRNA synthetase 35.1 2.4E+02 0.0053 33.4 10.2 34 854-896 7-40 (425)
311 PF15294 Leu_zip: Leucine zipp 34.8 8E+02 0.017 28.7 14.4 41 936-976 130-170 (278)
312 PRK06231 F0F1 ATP synthase sub 34.7 6.3E+02 0.014 27.5 12.4 17 869-885 98-114 (205)
313 PRK00409 recombination and DNA 34.7 7.2E+02 0.016 32.0 14.6 11 1101-1111 708-718 (782)
314 COG4694 Uncharacterized protei 34.6 6.6E+02 0.014 32.2 13.7 36 106-142 438-473 (758)
315 PF02841 GBP_C: Guanylate-bind 34.6 5E+02 0.011 29.1 12.0 28 54-81 215-242 (297)
316 PRK09343 prefoldin subunit bet 34.6 4.1E+02 0.0088 26.8 10.2 37 118-154 75-111 (121)
317 KOG1853|consensus 34.4 8.3E+02 0.018 28.8 14.0 31 108-138 95-125 (333)
318 KOG2891|consensus 34.3 4.4E+02 0.0096 31.1 11.6 37 875-911 335-371 (445)
319 PRK13428 F0F1 ATP synthase sub 34.3 5.7E+02 0.012 30.7 13.0 38 848-886 31-68 (445)
320 cd00632 Prefoldin_beta Prefold 34.0 4.4E+02 0.0096 25.5 11.1 48 912-962 54-101 (105)
321 KOG4572|consensus 34.0 3.9E+02 0.0085 35.2 11.9 69 899-969 964-1033(1424)
322 PF07794 DUF1633: Protein of u 33.6 1E+02 0.0023 38.1 7.0 33 981-1013 658-699 (790)
323 COG0419 SbcC ATPase involved i 33.5 1.2E+03 0.025 30.2 20.0 149 35-193 287-436 (908)
324 KOG0577|consensus 33.5 5.5E+02 0.012 33.3 12.9 108 38-151 500-624 (948)
325 PF10174 Cast: RIM-binding pro 33.5 1E+03 0.023 31.0 15.7 140 839-978 228-383 (775)
326 KOG1899|consensus 33.3 1.2E+03 0.026 30.3 16.0 120 35-162 107-251 (861)
327 KOG0243|consensus 33.3 1.4E+03 0.03 31.0 23.6 123 72-194 481-613 (1041)
328 COG4717 Uncharacterized conser 33.2 9.4E+02 0.02 32.2 15.1 22 846-867 178-199 (984)
329 PRK09174 F0F1 ATP synthase sub 32.9 6.9E+02 0.015 27.3 14.8 17 869-885 103-119 (204)
330 PRK00106 hypothetical protein; 32.8 1.1E+03 0.023 29.6 18.3 34 221-256 200-233 (535)
331 PRK10869 recombination and rep 32.7 1E+03 0.022 29.3 19.9 143 53-199 153-317 (553)
332 PF08702 Fib_alpha: Fibrinogen 32.4 6.1E+02 0.013 26.6 13.3 94 35-132 32-129 (146)
333 PF09787 Golgin_A5: Golgin sub 32.3 1E+03 0.022 29.0 14.9 36 1165-1205 361-396 (511)
334 PRK03598 putative efflux pump 32.3 7.5E+02 0.016 27.6 13.3 18 35-52 77-94 (331)
335 KOG3564|consensus 32.2 2.1E+02 0.0045 35.7 9.1 62 76-137 46-107 (604)
336 PF12252 SidE: Dot/Icm substra 32.1 1.5E+03 0.033 31.1 16.9 327 894-1252 1010-1408(1439)
337 KOG4673|consensus 32.0 8.1E+02 0.018 32.1 14.0 65 1238-1311 752-816 (961)
338 PLN02678 seryl-tRNA synthetase 32.0 2.4E+02 0.0053 34.1 9.6 15 882-896 31-45 (448)
339 TIGR03545 conserved hypothetic 32.0 2.7E+02 0.0059 34.5 10.2 91 849-957 164-259 (555)
340 COG2433 Uncharacterized conser 31.6 5.2E+02 0.011 33.1 12.3 17 852-868 355-371 (652)
341 PF00769 ERM: Ezrin/radixin/mo 31.6 7.7E+02 0.017 27.5 14.4 24 849-872 5-28 (246)
342 PF03962 Mnd1: Mnd1 family; I 31.6 6.5E+02 0.014 27.2 11.8 105 841-969 61-166 (188)
343 PF06120 Phage_HK97_TLTM: Tail 31.6 8.1E+02 0.018 28.8 13.2 149 15-182 53-205 (301)
344 PF05483 SCP-1: Synaptonemal c 31.6 1.3E+03 0.029 30.2 16.7 109 869-984 178-286 (786)
345 PF07200 Mod_r: Modifier of ru 31.3 2.2E+02 0.0047 28.6 7.8 45 116-160 43-87 (150)
346 PRK14472 F0F1 ATP synthase sub 31.3 6.2E+02 0.013 26.3 12.4 37 853-890 53-89 (175)
347 PF06005 DUF904: Protein of un 31.1 2.8E+02 0.0062 26.4 8.0 33 926-958 13-45 (72)
348 COG3206 GumC Uncharacterized p 31.0 7.2E+02 0.016 29.2 13.0 89 78-170 306-394 (458)
349 COG1322 Predicted nuclease of 30.8 1E+03 0.022 29.3 14.3 28 140-167 162-189 (448)
350 COG0598 CorA Mg2+ and Co2+ tra 30.7 8E+02 0.017 27.8 12.9 42 850-903 155-196 (322)
351 cd07623 BAR_SNX1_2 The Bin/Amp 30.7 7.3E+02 0.016 27.0 13.0 100 849-959 73-177 (224)
352 PF00804 Syntaxin: Syntaxin; 30.5 4E+02 0.0088 24.0 10.6 44 935-986 60-103 (103)
353 PF05600 DUF773: Protein of un 30.4 9.5E+02 0.02 29.7 14.2 95 77-176 411-505 (507)
354 TIGR02680 conserved hypothetic 30.2 1.6E+03 0.034 30.7 18.6 43 933-975 335-377 (1353)
355 PLN02320 seryl-tRNA synthetase 30.1 2.6E+02 0.0056 34.5 9.5 42 25-77 62-103 (502)
356 KOG2991|consensus 29.9 5.3E+02 0.011 30.3 11.2 46 117-162 260-305 (330)
357 PF07200 Mod_r: Modifier of ru 29.7 2.5E+02 0.0055 28.2 8.0 33 917-949 55-87 (150)
358 PF00435 Spectrin: Spectrin re 29.6 3.3E+02 0.0071 23.6 7.8 58 108-168 35-92 (105)
359 KOG0992|consensus 29.6 9.3E+02 0.02 30.5 13.7 25 945-969 315-339 (613)
360 TIGR02894 DNA_bind_RsfA transc 29.5 3.1E+02 0.0067 29.9 8.9 86 68-163 54-139 (161)
361 PF10481 CENP-F_N: Cenp-F N-te 29.4 9.4E+02 0.02 28.5 13.1 54 923-976 66-119 (307)
362 PF12718 Tropomyosin_1: Tropom 29.3 6.7E+02 0.015 26.1 15.1 15 851-865 16-30 (143)
363 PF06156 DUF972: Protein of un 29.3 2E+02 0.0044 29.0 7.1 47 118-164 5-51 (107)
364 KOG0979|consensus 29.0 1.6E+03 0.034 30.6 16.2 121 36-167 185-312 (1072)
365 PF10205 KLRAQ: Predicted coil 28.8 5.1E+02 0.011 26.6 9.7 63 915-977 10-72 (102)
366 KOG0971|consensus 28.3 1.7E+03 0.036 30.3 17.8 37 1231-1267 777-819 (1243)
367 PRK09841 cryptic autophosphory 28.0 4E+02 0.0087 33.4 10.8 21 176-196 372-392 (726)
368 KOG0992|consensus 27.9 1.3E+03 0.029 29.3 14.6 82 925-1010 309-390 (613)
369 PF04849 HAP1_N: HAP1 N-termin 27.8 8.6E+02 0.019 28.8 12.6 109 110-234 86-241 (306)
370 PF09403 FadA: Adhesion protei 27.8 7E+02 0.015 26.1 10.8 99 848-959 26-124 (126)
371 PRK13453 F0F1 ATP synthase sub 27.8 7.3E+02 0.016 26.0 12.4 20 869-888 68-87 (173)
372 PF07246 Phlebovirus_NSM: Phle 27.5 5E+02 0.011 30.2 10.5 42 936-977 200-241 (264)
373 PF09440 eIF3_N: eIF3 subunit 26.8 1.7E+02 0.0037 30.3 6.3 87 95-193 31-122 (133)
374 PF02601 Exonuc_VII_L: Exonucl 26.8 5E+02 0.011 29.0 10.3 76 1177-1252 147-229 (319)
375 PF15272 BBP1_C: Spindle pole 26.7 8.6E+02 0.019 27.3 11.8 36 853-888 30-65 (196)
376 PF10267 Tmemb_cc2: Predicted 26.7 1.1E+03 0.024 28.6 13.6 66 917-985 244-317 (395)
377 PF13815 Dzip-like_N: Iguana/D 26.7 4E+02 0.0087 26.5 8.7 41 934-974 76-116 (118)
378 PTZ00464 SNF-7-like protein; P 26.6 9.2E+02 0.02 26.8 15.3 52 989-1043 119-170 (211)
379 PF03357 Snf7: Snf7; InterPro 26.3 6.5E+02 0.014 25.0 10.5 79 926-1024 53-131 (171)
380 TIGR02338 gimC_beta prefoldin, 26.3 6.3E+02 0.014 24.8 10.1 48 912-962 58-105 (110)
381 PF05384 DegS: Sensor protein 26.2 8.5E+02 0.018 26.3 16.7 65 90-167 76-140 (159)
382 KOG0288|consensus 26.2 1.2E+03 0.025 29.1 13.5 19 1114-1132 198-216 (459)
383 PRK00409 recombination and DNA 26.2 5.8E+02 0.013 32.7 11.9 13 351-363 746-758 (782)
384 TIGR00634 recN DNA repair prot 26.1 1.3E+03 0.027 28.3 20.2 144 54-198 158-321 (563)
385 PF05600 DUF773: Protein of un 26.1 1.1E+03 0.024 29.2 13.7 65 926-993 441-505 (507)
386 PF14182 YgaB: YgaB-like prote 26.1 2.4E+02 0.0051 28.0 6.7 38 924-961 17-56 (79)
387 smart00338 BRLZ basic region l 25.9 1.6E+02 0.0034 26.3 5.2 24 119-142 38-61 (65)
388 PF14662 CCDC155: Coiled-coil 25.8 9.9E+02 0.021 26.9 18.2 104 904-1010 64-177 (193)
389 TIGR01069 mutS2 MutS2 family p 25.6 1.1E+03 0.025 30.3 14.2 26 869-894 520-545 (771)
390 TIGR01541 tape_meas_lam_C phag 25.5 1.1E+03 0.023 27.8 12.9 42 855-896 47-91 (332)
391 PF05791 Bacillus_HBL: Bacillu 25.4 8.5E+02 0.018 26.0 12.3 17 874-890 83-100 (184)
392 TIGR03185 DNA_S_dndD DNA sulfu 25.1 1.4E+03 0.03 28.4 23.5 298 892-1253 185-500 (650)
393 KOG0963|consensus 25.0 1.6E+03 0.034 29.0 20.3 38 106-143 188-225 (629)
394 PF05377 FlaC_arch: Flagella a 24.9 95 0.0021 28.7 3.7 41 35-75 3-46 (55)
395 COG2882 FliJ Flagellar biosynt 24.8 4.9E+02 0.011 27.9 9.2 98 1165-1265 7-107 (148)
396 TIGR01069 mutS2 MutS2 family p 24.7 1.3E+03 0.029 29.7 14.6 7 818-824 475-481 (771)
397 PF05010 TACC: Transforming ac 24.7 1E+03 0.022 26.6 16.9 35 851-889 78-112 (207)
398 PF06705 SF-assemblin: SF-asse 24.4 9.6E+02 0.021 26.3 17.2 20 1105-1124 222-241 (247)
399 PF12777 MT: Microtubule-bindi 24.3 2E+02 0.0044 32.8 7.0 32 126-157 240-271 (344)
400 PF06156 DUF972: Protein of un 24.2 3.3E+02 0.0071 27.5 7.5 39 925-963 16-54 (107)
401 COG4487 Uncharacterized protei 24.2 8.2E+02 0.018 30.2 12.0 93 855-959 113-205 (438)
402 KOG3119|consensus 24.0 2.8E+02 0.0062 31.2 7.9 25 935-959 226-250 (269)
403 PLN02320 seryl-tRNA synthetase 23.8 5.3E+02 0.011 32.0 10.6 31 857-896 75-105 (502)
404 KOG4005|consensus 23.8 2.9E+02 0.0063 31.9 7.8 20 1117-1136 268-287 (292)
405 PRK10869 recombination and rep 23.7 5.6E+02 0.012 31.5 10.8 46 918-963 321-366 (553)
406 PF08656 DASH_Dad3: DASH compl 23.7 1.5E+02 0.0033 28.9 4.9 23 963-985 38-60 (78)
407 PRK10476 multidrug resistance 23.5 1E+03 0.022 26.8 11.9 16 35-50 82-97 (346)
408 PF14988 DUF4515: Domain of un 23.4 1E+03 0.022 26.2 13.8 107 847-975 16-123 (206)
409 KOG0163|consensus 22.9 1.2E+03 0.026 31.0 13.4 63 824-886 840-908 (1259)
410 PF12777 MT: Microtubule-bindi 22.8 2.1E+02 0.0047 32.7 6.8 26 935-960 246-271 (344)
411 COG3206 GumC Uncharacterized p 22.8 1.1E+03 0.024 27.8 12.5 26 961-986 368-393 (458)
412 KOG1161|consensus 22.7 8.4E+02 0.018 29.0 11.4 64 1178-1241 222-289 (310)
413 TIGR03752 conj_TIGR03752 integ 22.6 4.9E+02 0.011 32.2 9.9 71 914-985 64-135 (472)
414 PRK14473 F0F1 ATP synthase sub 22.5 8.5E+02 0.018 25.0 14.5 19 869-887 58-76 (164)
415 PRK05561 DNA topoisomerase IV 22.4 1.3E+03 0.029 29.7 14.0 74 910-983 408-482 (742)
416 PF07851 TMPIT: TMPIT-like pro 22.3 4.4E+02 0.0096 31.2 9.2 67 926-993 41-108 (330)
417 CHL00118 atpG ATP synthase CF0 22.2 8.7E+02 0.019 25.0 13.0 34 852-886 56-89 (156)
418 PF14182 YgaB: YgaB-like prote 22.1 2.7E+02 0.0059 27.5 6.3 36 108-143 18-55 (79)
419 TIGR01010 BexC_CtrB_KpsE polys 22.1 9.5E+02 0.021 27.3 11.6 27 122-148 279-305 (362)
420 PF02183 HALZ: Homeobox associ 22.0 1.9E+02 0.0041 25.5 4.8 37 126-162 3-39 (45)
421 cd00187 TOP4c DNA Topoisomeras 22.0 1.5E+03 0.033 27.7 13.7 39 937-975 404-442 (445)
422 TIGR01061 parC_Gpos DNA topois 21.9 1.5E+03 0.032 29.3 14.2 121 44-165 343-471 (738)
423 PF11544 Spc42p: Spindle pole 21.9 2.4E+02 0.0052 27.7 5.9 45 931-975 5-49 (76)
424 PF08172 CASP_C: CASP C termin 21.7 1.5E+02 0.0033 33.2 5.3 44 118-161 90-133 (248)
425 KOG3091|consensus 21.6 1.3E+03 0.028 29.2 13.0 78 917-1001 376-469 (508)
426 PF12325 TMF_TATA_bd: TATA ele 21.6 9.1E+02 0.02 25.0 12.2 48 935-982 65-112 (120)
427 PF13870 DUF4201: Domain of un 21.6 9.3E+02 0.02 25.1 14.7 39 935-973 88-126 (177)
428 cd07597 BAR_SNX8 The Bin/Amphi 21.3 1.1E+03 0.025 26.0 11.9 101 851-962 86-197 (246)
429 KOG2264|consensus 21.3 2.2E+02 0.0048 36.1 6.8 71 1197-1267 82-152 (907)
430 PF10224 DUF2205: Predicted co 21.1 3.9E+02 0.0084 26.2 7.1 41 917-957 23-63 (80)
431 KOG2010|consensus 21.1 2.4E+02 0.0052 33.7 6.8 70 97-166 116-185 (405)
432 COG3096 MukB Uncharacterized p 21.1 1.4E+03 0.031 30.4 13.5 108 848-973 512-630 (1480)
433 PF04728 LPP: Lipoprotein leuc 21.0 3.2E+02 0.0069 25.6 6.2 44 122-165 4-47 (56)
434 PF08581 Tup_N: Tup N-terminal 20.8 7.9E+02 0.017 24.0 10.1 20 869-888 6-25 (79)
435 PF14073 Cep57_CLD: Centrosome 20.7 1.1E+03 0.024 26.2 11.1 51 106-156 112-162 (178)
436 PRK13460 F0F1 ATP synthase sub 20.6 9.8E+02 0.021 25.0 15.5 42 849-890 40-87 (173)
437 KOG2398|consensus 20.6 1.8E+03 0.04 28.1 15.0 31 973-1003 189-219 (611)
438 PLN02939 transferase, transfer 20.1 2.3E+03 0.049 29.0 16.8 25 847-871 262-286 (977)
439 TIGR00414 serS seryl-tRNA synt 20.1 5.4E+02 0.012 30.6 9.4 33 857-896 10-42 (418)
440 smart00338 BRLZ basic region l 20.1 2.3E+02 0.005 25.2 5.1 26 935-960 37-62 (65)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.56 E-value=8.9 Score=47.32 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 850 LVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 929 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae 929 (1642)
...+....|..+...+. +..+...+-++|+......+.++++-..+...-....+..-..+-.-++.++.....++..-
T Consensus 171 ~~~~~~~~l~~~~~~l~-el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 249 (1164)
T TIGR02169 171 KKEKALEELEEVEENIE-RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASL 249 (1164)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544442 34444456666666666666655544444222111111111111111223344444444444
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
..+...++.++..++.++..+..++..++..+..
T Consensus 250 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 283 (1164)
T TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555555555544444
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.32 E-value=13 Score=47.87 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=15.6
Q ss_pred HHHHHhhchhHHHHHHHHhhhhccccc
Q psy16785 1107 QKEIANNLPKVWRILIELLNTHQEQYE 1133 (1642)
Q Consensus 1107 ~eEIa~NLPKVWRVLiELLS~Hqe~~e 1133 (1642)
+-+++.--|+.=.++.-+|+ |-.-++
T Consensus 595 a~dli~~d~~~~~~~~~~l~-~t~Iv~ 620 (1163)
T COG1196 595 ASDLIDFDPKYEPAVRFVLG-DTLVVD 620 (1163)
T ss_pred HHHHhcCCHHHHHHHHHHhC-CeEEec
Confidence 34677777766666666666 444333
No 3
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.17 E-value=0.56 Score=48.84 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=61.8
Q ss_pred eeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 29 MVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAA-ELEHKTMIEKELAKNALLEAKLKEIQE 107 (1642)
Q Consensus 29 Ml~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaA-a~e~e~LiRle~~KndLeEaKl~e~~~ 107 (1642)
||.--..++...|.++..+++.. +-.+..+++++.-+...=.-|+.|++.| +.+.+.|-|.-+.++.-.+..+.
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~-~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~---- 101 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARV-MANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE---- 101 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----
Confidence 33333334444444444444322 2456667777777777778889999888 56677776644443333333332
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
.++..++.+...+..+...|..+..++...+.++..|.+++
T Consensus 102 ----------~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 102 ----------RLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555554444
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=94.89 E-value=0.7 Score=56.25 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
++.....+....++++.+++++.+|+.+++....+...++++......+...+..+++-++
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 585 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555544444444444444444444444444444333
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.82 E-value=19 Score=47.03 Aligned_cols=157 Identities=12% Similarity=0.117 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHhHHH-HHHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES-PEEIKIEYEKQMTNYKK-LRELYEQRAAA-AELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er-s~dLr~EYERQL~NIR~-LR~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
..++.|+.++.+++..|.+- .+.-..+|..++...+. ++.|=.+-.++ .++..-+-.-..+|+-.|++.++..++..
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 550 (1311)
T TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ 550 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888888888766 55556677777776553 23332233333 33444444446777777777777777766
Q ss_pred HHHHHHHh---------------------HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 926 IQAQLEKY---------------------KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 926 Lqae~eK~---------------------KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
|..-..+. ..+...+..+++++..+..++..++.++.....+...++.++.-.-..+.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~- 629 (1311)
T TIGR00606 551 IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF- 629 (1311)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 66444332 22233334444444444444444444444444455555555443222222
Q ss_pred hhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 985 MLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 985 mLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
..-++|-....|++--.-|...
T Consensus 630 ----~~~~~~~~~~~L~~~~~~l~~~ 651 (1311)
T TIGR00606 630 ----DVCGSQDEESDLERLKEEIEKS 651 (1311)
T ss_pred ----cCCCchhHHHHHHHHHHHHHHH
Confidence 2234444444554444444433
No 6
>KOG4643|consensus
Probab=94.66 E-value=10 Score=48.98 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=43.2
Q ss_pred hHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHH
Q psy16785 1178 LTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKID 1251 (1642)
Q Consensus 1178 L~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeE 1251 (1642)
..+..++.|+||.-|..|-.++ +.--..+.+++.||++.-+|=..+.-+++.=+.++.-|+.|
T Consensus 483 t~el~~~iknlnk~L~~r~~el-----------srl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E 545 (1195)
T KOG4643|consen 483 TEELLNQIKNLNKSLNNRDLEL-----------SRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE 545 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455677888898888887655 33334688999999999888777766666555555444433
No 7
>PRK10698 phage shock protein PspA; Provisional
Probab=94.07 E-value=1 Score=48.48 Aligned_cols=109 Identities=14% Similarity=0.221 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhhcCch------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESPE------EIKIEYEKQMTNYKKLRELYEQRAAAAEL-EHKTMIEKELAKNALLEAKLKEIQEE 108 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~~------DLR~EYEKQL~NIR~LRqLYEERaRaAa~-e~e~LiRle~~KndLeEaKl~e~~~e 108 (1642)
-|+.-+++|+..+.+... -.++.+++|+..+...-.-|+.||+.|-- +++.|-|.-+.++.--+.++.
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~----- 102 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA----- 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----
Confidence 345556666666664432 44677888888888888999999988744 677765544444433333333
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 109 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 109 lqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
.++..+......++.+...+..|+.++.+.+.-+..|.+..
T Consensus 103 ---------~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 103 ---------TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555444444444433
No 8
>PRK09039 hypothetical protein; Validated
Probab=93.98 E-value=1.5 Score=49.75 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred eeeehhhHHHHHHHHHHHhhcCchHHHHHHHH--HHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy16785 30 VVFKVSDLKTRLKDVEKKLLESPEEIKIEYEK--QMTN-YKKLRELYEQRAAAAELEHKTMIEKELAK---NALLEAKLK 103 (1642)
Q Consensus 30 l~~keaQLK~KL~EIE~SlaE~~~DLR~EYEK--QL~N-IR~LRqLYEERaRaAa~e~e~LiRle~~K---ndLeEaKl~ 103 (1642)
|+-..+.++.+|.+++..++.++.-|--|-.+ +++. |..||.=|+ .++..+..|......+ ..-.++++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~~~~~~~~~~~~~~~ 119 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLAELAGAGAAAEGRAG 119 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence 33444667888888888888777422211111 1111 112222222 2333333332211111 113356666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhh
Q psy16785 104 EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 169 (1642)
Q Consensus 104 e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlL 169 (1642)
..+.+|..+...+.+..-++..|..+|+.+...|..++..|..........+.++.-.-.-+...|
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777777777777777777777766665544444443
No 9
>PRK09039 hypothetical protein; Validated
Probab=93.50 E-value=3.1 Score=47.34 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 916 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 916 qr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
+..+.....+|..+...+.+..-++..|..+|+.+...+..+++.|...++.-...+.++.-+
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555555555555443
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.26 E-value=3.3 Score=44.81 Aligned_cols=104 Identities=18% Similarity=0.330 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKL-RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~L-R~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
|.+-..|..+|..+..+.+....+++.=|+.+|...|.. -.+-.+++++ .++..+ ++..+.+.+..+
T Consensus 24 E~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l-~~e~~~-----------l~~e~~~~r~k~ 91 (312)
T PF00038_consen 24 EQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARL-ELEIDN-----------LKEELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHH-hhhhhh-----------HHHHHHHHHHHH
Confidence 567778888888888887777888999999999988754 4466666554 445555 568888999999
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
..+....+.++..+..|.++++...-....++.++..
T Consensus 92 e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 92 EEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 9998889999999988888888766666666655443
No 11
>KOG0161|consensus
Probab=93.03 E-value=36 Score=46.87 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 913 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSL 965 (1642)
Q Consensus 913 ~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tk 965 (1642)
.+++..+....+.++.+-+|.+.+.+...+|+..++-+...+++-+...+.+.
T Consensus 988 k~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~E 1040 (1930)
T KOG0161|consen 988 KELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELE 1040 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777777777777777777777777766665555544444443
No 12
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=93.01 E-value=3.2 Score=44.20 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKLRELYEQRAAAAEL-EHKTMIEKELAKNALLEAKLKEIQEE 108 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~LRqLYEERaRaAa~-e~e~LiRle~~KndLeEaKl~e~~~e 108 (1642)
-|.--+++|++.|.+.. +-.++-.++|+.-+...-.-|+.|++.|-- +.+.|-| ..|.+.+-
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr-----~Al~~k~~------ 96 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR-----AALIEKQK------ 96 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHH------
Confidence 44555666666555322 234566788888888888899999987743 5666544 34332211
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 109 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 109 lqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
..+....|+.++..+...|+.+...|..|+.++...++-+..|.+.+
T Consensus 97 ---~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 97 ---AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445555555556666666666666666666666555554444
No 13
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=92.77 E-value=1.9 Score=45.15 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=32.6
Q ss_pred eeehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcC------chHHHHHHHHHHHhHHH
Q psy16785 2 VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 2 ~~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~------~~DLR~EYEKQL~NIR~ 68 (1642)
|.|.||..++.|-+++.+..++ ..|=..|.+.+.+- ...++.+|+.+|.+.|.
T Consensus 18 I~FlILy~ll~kf~~ppI~~iL--------------e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 18 VTFGLLYIFVYKFITPKAEEIF--------------NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT 76 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665555555566665443 34445555555422 23889999999998874
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.31 E-value=45 Score=41.15 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=16.7
Q ss_pred hhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhh
Q psy16785 1175 KNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTE 1209 (1642)
Q Consensus 1175 KKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~E 1209 (1642)
...+..++.+++.-...++.++...+.++..+..+
T Consensus 395 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 429 (1179)
T TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445555555555555555544444444333
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.06 E-value=10 Score=43.91 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+..-..+.+.++.++.+|+........++..+.++|.....+.+.+..+.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555555555555555555555555555554443
No 16
>KOG1029|consensus
Probab=90.67 E-value=4.6 Score=50.89 Aligned_cols=74 Identities=11% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHHhhc
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINN 1013 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dMt~~ 1013 (1642)
++++...|+-++++++..+.+|..+|--.....-.-+.++..++...--|++ .+|-|.+.|+|--.-|..++..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is----ei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS----EIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhH
Confidence 4445555555556666666666666555555555555566666666555543 4666777777766666666543
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.61 E-value=56 Score=44.14 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh-----hhC-C
Q psy16785 99 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM-----LIN-P 172 (1642)
Q Consensus 99 EaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql-----Llg-~ 172 (1642)
...+.++++.++....+..++++.+..++.+++.+..++..++.++.....+...+++++.......+.+ +.| +
T Consensus 354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~ 433 (1486)
T PRK04863 354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLP 433 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455566667777777777777777777777777777777777777777777777776666655555533 446 7
Q ss_pred CCCHHHHHHHHHHhHHHHHH
Q psy16785 173 MINLDMLIKLIQDNYLLIID 192 (1642)
Q Consensus 173 ~~DlDrLi~mLEENr~LL~d 192 (1642)
.+..+-|-.+|+.=..-+..
T Consensus 434 ~~SdEeLe~~LenF~aklee 453 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQE 453 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88888887777654333333
No 18
>KOG4674|consensus
Probab=90.55 E-value=12 Score=50.87 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh
Q psy16785 869 PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 948 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve 948 (1642)
.+..|.+|+.-..++.....+-+.=.-|..+...| .....++.+..+|..+|.+.+.++..++.
T Consensus 1197 L~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN----------------~~LRee~~~~~~k~qEl~~~i~kl~~el~ 1260 (1822)
T KOG4674|consen 1197 LTAERASSQKSAVSDDEHKEILEKVEEVNLLRESN----------------KVLREENEANLEKIQELRDKIEKLNFELA 1260 (1822)
T ss_pred HHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56667777777777777777777666666665555 22345577778888999999999999999
Q ss_pred hhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC-CCCChHHHHHHHHHhHHHHHHHh
Q psy16785 949 LKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN-PMINLDMLIKLIQDNYLLIIDLI 1011 (1642)
Q Consensus 949 ~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG-~~iDLDrL~~lLEENr~LL~dMt 1011 (1642)
-++.+++.|.++++...|+..-|+.+|.--=.=|-.++.- .++|+--+.++..+++.|=..+.
T Consensus 1261 plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1261 PLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877777666666 88888888888888888877774
No 19
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.31 E-value=15 Score=38.55 Aligned_cols=121 Identities=16% Similarity=0.288 Sum_probs=53.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHH
Q psy16785 873 KIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDD 952 (1642)
Q Consensus 873 r~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~d 952 (1642)
+..+++++.-+...-.-|+.|++.| +... +.++|+-+|.++ . .....+..-......+...+..|...+..+..
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~~A-l~~g---~edLAr~al~~k-~-~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAELA-LAAG---REDLAREALQRK-A-DLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcC---CHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777665 3222 246787777622 1 12222232222233344444444444444444
Q ss_pred HHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC-CCCChHHHHHHH
Q psy16785 953 EINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN-PMINLDMLIKLI 1000 (1642)
Q Consensus 953 Ei~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG-~~iDLDrL~~lL 1000 (1642)
.|..++.+.....+-.+..+.+-. ||..++.+-+| ..-.|+|+-.-+
T Consensus 127 kl~e~k~k~~~l~ar~~~a~a~~~-~~~~~~~~~~~~a~~~~er~e~ki 174 (221)
T PF04012_consen 127 KLEELKSKREELKARENAAKAQKK-VNEALASFSVSSAMDSFERMEEKI 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCCccchHHHHHHHHHHH
Confidence 444444444444333333333322 33333222222 444555554443
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.56 E-value=29 Score=46.71 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=117.5
Q ss_pred hhhhhccccCCCCchhhhhhhhcccccccCCcc-ccccccccCcchhhhcccchhccchhhhccccCCccCCCccccccc
Q psy16785 749 QDRIDTRLKSSPGINECTSAVSAVSEESSGLRS-VDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLKTC 827 (1642)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1642)
..-+.|-+..-|..+---+--.-+-+|++|+++ |+.++--+..-.||+--+.. ++.|.=.-+ .-..+-||-|--..
T Consensus 198 ~kLf~taiy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~-tq~drdlFk-~lI~~~~~~~aad~- 274 (1486)
T PRK04863 198 YRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRV-TQSDRDLFK-HLITESTNYVAADY- 274 (1486)
T ss_pred HHHHHHHHHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHH-HHhhhhhhhhHHHH-
Confidence 444444444333322222333456678888986 88888888888898865432 222221110 01123334332211
Q ss_pred ccCCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHH
Q psy16785 828 VPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEK 907 (1642)
Q Consensus 828 ~~m~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~k 907 (1642)
|....---.++-.+-..| ....+.+.+|...+..+.+- +++-.|-+.++.-+..=++-+++-....+ + +..
T Consensus 275 --~r~~eERR~liEEAag~r-~rk~eA~kkLe~tE~nL~rI-~diL~ELe~rL~kLEkQaEkA~kyleL~e---e--~lr 345 (1486)
T PRK04863 275 --MRHANERRVHLEEALELR-RELYTSRRQLAAEQYRLVEM-ARELAELNEAESDLEQDYQAASDHLNLVQ---T--ALR 345 (1486)
T ss_pred --hhCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HHH
Confidence 332222223333332233 33344444444444444332 22224444443332222222222221111 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHH----
Q psy16785 908 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS---- 983 (1642)
Q Consensus 908 e~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFS---- 983 (1642)
...+-..+...+.+....++...++..++++.+..++.+++.+..++..++.++.....+...++.++........
T Consensus 346 ~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 346 QQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223335556666666666666666666666666666666666666666665555555555555544444433
Q ss_pred -HhhcC-CCCChHHHHHHHHHhHHHH
Q psy16785 984 -NMLIN-PMINLDMLIKLIQDNYLLI 1007 (1642)
Q Consensus 984 -qmLLG-~~iDLDrL~~lLEENr~LL 1007 (1642)
+.+.| +++..+-|-.+|+.=..-+
T Consensus 426 ~~~~~~~~~~SdEeLe~~LenF~akl 451 (1486)
T PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKE 451 (1486)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 56778 8888888776665433333
No 21
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.24 E-value=4.8 Score=42.85 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHhccC----chHH-H-HHH--HHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES----PEEI-K-IEY--EKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLK 920 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er----s~dL-r-~EY--ERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~ 920 (1642)
..|.+.|.+..++|..+..+ .... + .+. .--|.+ .|..|.||++|.+.|...| ++| -
T Consensus 23 ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~--~l~rLeEEqqR~~~L~qvN---------~lL----R 87 (182)
T PF15035_consen 23 AKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEE--ALIRLEEEQQRSEELAQVN---------ALL----R 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHH--HHHHHHHHHHhHHHHHHHH---------HHH----H
Confidence 45889999999999999554 0000 1 111 111222 7899999999999998877 444 2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 921 EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 921 e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
..|+.....|..|...+.+|-.++..+.+|+...+...
T Consensus 88 ---eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 88 ---EQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23666667778888899998888888888887766544
No 22
>KOG1029|consensus
Probab=89.13 E-value=6.8 Score=49.48 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHH
Q psy16785 70 RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLA 149 (1642)
Q Consensus 70 RqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~a 149 (1642)
|+|-=||+|.++|--..--..+.+= -+-+|.+.++-+|.+=..|.+.|..+++...-++.+...+|+.++-.|...-.
T Consensus 409 RqlewErar~qem~~Qk~reqe~iv--~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is 486 (1118)
T KOG1029|consen 409 RQLEWERARRQEMLNQKNREQEWIV--YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS 486 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH
Confidence 6666777777776433221222211 13456666777777778888888888888888888888888888888888888
Q ss_pred HHHHhHHHHHHHHH
Q psy16785 150 ENHILNSQMTLVNN 163 (1642)
Q Consensus 150 E~r~L~aQM~~VN~ 163 (1642)
|+-+|++++--.|+
T Consensus 487 ei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 487 EIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887766654
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=88.86 E-value=12 Score=45.62 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 157 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQ 157 (1642)
++++..+..+.+++.....++..+.+.+.....+...|...
T Consensus 196 ~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~ 236 (880)
T PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333333
No 24
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.72 E-value=7.4 Score=48.41 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHh-HHHH-HHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H
Q psy16785 869 PEEIKIEYEKQMTN-YKKL-RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQL---------------E 931 (1642)
Q Consensus 869 s~dLr~EYERQL~N-IR~L-R~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~---------------e 931 (1642)
...+|+|+| ||+| |-+| ++.-.+|+-.+.||+. +..|+.+.+.++++|.+.+..-..+- +
T Consensus 462 L~qlr~ene-~Lq~Kl~~L~~aRq~DKq~l~~LEkr--L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e 538 (697)
T PF09726_consen 462 LSQLRQENE-QLQNKLQNLVQARQQDKQSLQQLEKR--LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQE 538 (697)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccch
Confidence 667888887 5554 2222 2334456666666665 45666666777888877665544432 2
Q ss_pred HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 932 KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 973 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~ 973 (1642)
-..-+..+.+.||.++..+..|+...++++.....|.+.|..
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467778888887777777777777777776666654443
No 25
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.44 E-value=32 Score=36.87 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhccC------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 852 SDLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 852 ~qLK~kL~qIE~sL~Er------s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
.-|.-.+++|++.|.+- .--.+.-.++|+.-+...-.-|+.|++.|=-.- + ..||+.+|.++.
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G-~---EdLAr~Al~~k~------- 95 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG-R---EDLARAALIEKQ------- 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHH-------
Confidence 34555566666655443 111234567777788888888888887743222 2 358888887322
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
...+....|+.++..+...|+.+...|..|+.++...++-...|...
T Consensus 96 --~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 96 --KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345555555555555555555555555555555555544433
No 26
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.36 E-value=2.9 Score=43.71 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
......|..|+.++..+..++..+.+++..-..-...|+.++.+.|.=|+.+ =+|+.++=+||..|+.-.
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~-------e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML-------EEKLRKLEEENRELVERW 181 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555443 378889999999998876
No 27
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.29 E-value=12 Score=43.32 Aligned_cols=79 Identities=27% Similarity=0.359 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC---CCCCHHHHHHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLDMLIKL 182 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg---~~~DlDrLi~m 182 (1642)
.+.+..++|+ +.+++..|+.|++..-||.+.+.. |+..++--+.=.|.=+|.+|-| .-+|||-|
T Consensus 128 re~lV~qLEk---~~~q~~qLe~d~qs~lDEkeEl~~-------ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaL--- 194 (319)
T PF09789_consen 128 REDLVEQLEK---LREQIEQLERDLQSLLDEKEELVT-------ERDAYKCKAHRLNHELNYILNGDENRIVDIDAL--- 194 (319)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHH---
Confidence 4566666654 567888888888888888877654 4455555555567777888888 66788875
Q ss_pred HHHhHHHHHHHHhhc
Q psy16785 183 IQDNYLLIIDLINNH 197 (1642)
Q Consensus 183 LEENr~LL~dMt~nE 197 (1642)
|.|||-|=-.+.+.+
T Consensus 195 i~ENRyL~erl~q~q 209 (319)
T PF09789_consen 195 IMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999988888766
No 28
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.11 E-value=22 Score=38.36 Aligned_cols=141 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCchH---HH----------HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Q psy16785 844 RSVILPLVSDLKTRLKDVEKKLLESPEE---IK----------IEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELA 910 (1642)
Q Consensus 844 rsvrE~Qv~qLK~kL~qIE~sL~Ers~d---Lr----------~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~a 910 (1642)
.|.|.-++.+|++.|.++...+.+-..+ |+ .-|+.+=.++.+|-.=+++=.|+..-.....-+
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~---- 82 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE---- 82 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4889999999999999998888776221 11 234444455555444444333332211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC
Q psy16785 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQIL-EMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 988 (1642)
Q Consensus 911 kn~Llqr~L~e~K~eLqae~eK~KnlEe~i~-~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG 988 (1642)
++.-+++.|.++..+|..-..+.+-|+..+. +=..+.+.+...+..++.++.........|.-++-+.|..|+..|.-
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1122344444444444433233332222222 00112344556666666666677777777888888888888887765
No 29
>KOG0250|consensus
Probab=88.06 E-value=23 Score=46.26 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=98.6
Q ss_pred ccccccceeeeehhhH---HHHHHHHHHHhhcCc---------hHHH--------HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16785 22 PLTSSTSMVVFKVSDL---KTRLKDVEKKLLESP---------EEIK--------IEYEKQMTNYKKLRELYEQRAAAAE 81 (1642)
Q Consensus 22 Vit~sKqMl~~keaQL---K~KL~EIE~SlaE~~---------~DLR--------~EYEKQL~NIR~LRqLYEERaRaAa 81 (1642)
-+..++..|..++.-+ |.++.+.+..+..+. +.|+ -+|++||.|+..+=...++|..-..
T Consensus 222 ~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~ 301 (1074)
T KOG0250|consen 222 SLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ 301 (1074)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555333 455555555555222 1222 4788999999888888888764333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHH
Q psy16785 82 LEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 161 (1642)
Q Consensus 82 ~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~V 161 (1642)
.-++.+..|+.=...|+.+|+..++.-..-..-..+.++.+-+++..+.-+.+++++++..+.-..+.++..+-..
T Consensus 302 ----~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l 377 (1074)
T KOG0250|consen 302 ----EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL 377 (1074)
T ss_pred ----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555656677788888877777777888888888999999999999999999998888888888888777
Q ss_pred HHHHHH
Q psy16785 162 NNLFSN 167 (1642)
Q Consensus 162 N~LFSq 167 (1642)
+..+..
T Consensus 378 ~k~I~~ 383 (1074)
T KOG0250|consen 378 EKQIAD 383 (1074)
T ss_pred HHHHHH
Confidence 766554
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.68 E-value=9.9 Score=47.98 Aligned_cols=89 Identities=22% Similarity=0.177 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHH-----HHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HhHhhhHHHHHHHHHHHHHHHH
Q psy16785 847 ILPLVSDLKTRLK-----DVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAE-LEHKTMIEKELAKNALLEAKLK 920 (1642)
Q Consensus 847 rE~Qv~qLK~kL~-----qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvae-le~e~~i~ke~akn~Llqr~L~ 920 (1642)
++.|+..+|.+|. .=++.+..+.+....|++|....|+-+|.--+ +.+..+ -.+.+.+..-.++..-||..|+
T Consensus 411 kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e-~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 411 KDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE-KERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6677888888887 33444445567778899999999998886654 222222 2455666777788888999999
Q ss_pred HHHHHHHHHHHHhHhH
Q psy16785 921 EIQEEIQAQLEKYKEN 936 (1642)
Q Consensus 921 e~K~eLqae~eK~Knl 936 (1642)
+..-.|..-.+....|
T Consensus 490 Ek~~~l~~~kee~s~l 505 (775)
T PF10174_consen 490 EKELQLEDAKEEASKL 505 (775)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 8876666444444433
No 31
>KOG0995|consensus
Probab=87.57 E-value=28 Score=42.98 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHH
Q psy16785 98 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLD 177 (1642)
Q Consensus 98 eEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlD 177 (1642)
++.|.+-+|.++..=+.--++|+.+.+.+++.++.++.||+.+.++|-..+.+.-.|+.++.. +++..-
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~-----------Q~iS~~ 332 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL-----------QGISGE 332 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCHH
Confidence 334444455555555555678999999999999999999999999999999999999998764 377777
Q ss_pred HHHHHHHHhHHHHHHHHhhc
Q psy16785 178 MLIKLIQDNYLLIIDLINNH 197 (1642)
Q Consensus 178 rLi~mLEENr~LL~dMt~nE 197 (1642)
-+.+|=.|+-.|-..+..-.
T Consensus 333 dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877766655444
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=87.57 E-value=17 Score=44.58 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhcCchHHH--HHHHHHHHhH
Q psy16785 35 SDLKTRLKDVEKKLLESPEEIK--IEYEKQMTNY 66 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~~DLR--~EYEKQL~NI 66 (1642)
..|+.++.++++.+.++..++. .+|++++.++
T Consensus 528 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 561 (880)
T PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAEL 561 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555444333 2445555544
No 33
>PRK11637 AmiB activator; Provisional
Probab=87.56 E-value=12 Score=42.99 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhc
Q psy16785 852 SDLKTRLKDVEKKLL 866 (1642)
Q Consensus 852 ~qLK~kL~qIE~sL~ 866 (1642)
.+++.+|++++..+.
T Consensus 43 ~~~~~~l~~l~~qi~ 57 (428)
T PRK11637 43 SDNRDQLKSIQQDIA 57 (428)
T ss_pred hhhHHHHHHHHHHHH
Confidence 467777777776553
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.42 E-value=16 Score=41.19 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=13.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 860 DVEKKLLESPEEIKIEYEKQMTNYKKLRELY 890 (1642)
Q Consensus 860 qIE~sL~Ers~dLr~EYERQL~NIR~LR~LY 890 (1642)
.|-..|.+..+.|+.+|..=..-+..|..++
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~ 179 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELL 179 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554433333333333
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.20 E-value=41 Score=43.90 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy16785 151 NHILNSQMTLVNNLFSNMLINPMINLDMLI 180 (1642)
Q Consensus 151 ~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi 180 (1642)
+..+++++..+.+-|.+=|.|.++|.++|.
T Consensus 745 ~~~~~~~~~~le~~~~~eL~~~GvD~~~I~ 774 (1201)
T PF12128_consen 745 KQEAKEQLKELEQQYNQELAGKGVDPERIQ 774 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344556666666667777777777765543
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.02 E-value=91 Score=38.90 Aligned_cols=11 Identities=45% Similarity=0.906 Sum_probs=7.4
Q ss_pred cccccccceeE
Q psy16785 1513 FKTVNKNFMRI 1523 (1642)
Q Consensus 1513 ~~~~~~~~~~~ 1523 (1642)
|..||.+|-.|
T Consensus 1024 f~~~~~~f~~~ 1034 (1164)
T TIGR02169 1024 FEAINENFNEI 1034 (1164)
T ss_pred HHHHHHHHHHH
Confidence 66677777654
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.74 E-value=39 Score=42.38 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHH----HHHHHHhHHHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDML----IKLIQDNYLLIID 192 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrL----i~mLEENr~LL~d 192 (1642)
.-++.|.+.||.|+..+..|+..+.+.+.....|.+.|.... --+..|.+.| .-|=+.|.+|=+.
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~-----------~e~~~~~e~L~~aL~amqdk~~~LE~s 609 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE-----------KESEKDTEVLMSALSAMQDKNQHLENS 609 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 347778888888887777777777777777666664444321 1123445443 4556778887666
Q ss_pred HHh
Q psy16785 193 LIN 195 (1642)
Q Consensus 193 Mt~ 195 (1642)
|..
T Consensus 610 Lsa 612 (697)
T PF09726_consen 610 LSA 612 (697)
T ss_pred hhH
Confidence 643
No 38
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.65 E-value=4.2 Score=42.51 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIID 192 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~d 192 (1642)
..+.+.....|..|++++..+..+|.++.+++..-..-...|+.|+.+.|.=|+.+ =+++.++=+||..|+.-
T Consensus 108 ~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~-------e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 108 EKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML-------EEKLRKLEEENRELVER 180 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33445556666667777777777777777777766666777777777777766655 47888999999999875
Q ss_pred H
Q psy16785 193 L 193 (1642)
Q Consensus 193 M 193 (1642)
.
T Consensus 181 w 181 (194)
T PF08614_consen 181 W 181 (194)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>PRK11637 AmiB activator; Provisional
Probab=86.54 E-value=51 Score=38.12 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16785 872 IKIEYEKQMTNYKKLRELYEQRAAAA 897 (1642)
Q Consensus 872 Lr~EYERQL~NIR~LR~LYEER~Rva 897 (1642)
+..+-...-..|..++..|..|.|..
T Consensus 108 l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666666653
No 40
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.53 E-value=80 Score=38.23 Aligned_cols=126 Identities=11% Similarity=0.185 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 885 KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 964 (1642)
Q Consensus 885 ~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~t 964 (1642)
.+..|-++...+-.+=..-.+.+-.+++.-++..|+..-+.++.|..-.+..++...++.+.+..+......+..++...
T Consensus 257 ~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 257 EIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555433333344666778888888899998888998888888877777777777777666666666665555
Q ss_pred HHH----------HHHhHHHHhHHHHHHHHhhcC---CCCChHHHHHHHHHhHHHHHHH
Q psy16785 965 LAE----------NHILNSQMTLVNNLFSNMLIN---PMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 965 kaE----------~r~L~~QM~lVN~LFSqmLLG---~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
+.. .+.++.++.-++.-|..+.-. ..+..+.+...+++-..=+..+
T Consensus 337 ~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leei 395 (569)
T PRK04778 337 KQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEI 395 (569)
T ss_pred HHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 544 677777777777776654322 5555777766666665555555
No 41
>PRK11281 hypothetical protein; Provisional
Probab=85.84 E-value=67 Score=42.43 Aligned_cols=134 Identities=12% Similarity=0.181 Sum_probs=87.2
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH------HHHHHHH
Q psy16785 54 EIKIEYEKQ-MTNYKKLRELYEQRAAAAELEHKTMIE-------------KELAKNALLEAKLKEIQ------EEIQAQL 113 (1642)
Q Consensus 54 DLR~EYEKQ-L~NIR~LRqLYEERaRaAa~e~e~LiR-------------le~~KndLeEaKl~e~~------~elqaE~ 113 (1642)
+++.+|.+| |.+-.+|..||..|......+.+.+.. +....+...++...+.. -.++.|+
T Consensus 205 ~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~ 284 (1113)
T PRK11281 205 NAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQEL 284 (1113)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHH
Confidence 455566555 467778888888888777777663322 12222222222111100 1166777
Q ss_pred HHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHH--HHHHHHhhhC------CCCCHHHHHHHHHH
Q psy16785 114 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV--NNLFSNMLIN------PMINLDMLIKLIQD 185 (1642)
Q Consensus 114 eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~V--N~LFSqlLlg------~~~DlDrLi~mLEE 185 (1642)
+.|..|-+++..+-+++..+..+....++.+.....--+.+++|+.++ +.+||.+|.. ..+.++.|..-+.+
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~~~iAd 364 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIAD 364 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHHHHHHH
Confidence 888888888888888888877777777887777777777778877665 5688888774 45556677777777
Q ss_pred hH
Q psy16785 186 NY 187 (1642)
Q Consensus 186 Nr 187 (1642)
.|
T Consensus 365 lr 366 (1113)
T PRK11281 365 LR 366 (1113)
T ss_pred HH
Confidence 66
No 42
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.78 E-value=14 Score=40.58 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=80.9
Q ss_pred eeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 29 MVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAE-LEHKTMIEKELAKNALLEAKLKEIQE 107 (1642)
Q Consensus 29 Ml~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa-~e~e~LiRle~~KndLeEaKl~e~~~ 107 (1642)
||.--..+.+.-|.++...++..- -..+..++++.......+=|+.+++.|= .+.+.|-|.-+.++...|..+
T Consensus 28 ~l~Q~ird~~~~l~~ar~~~A~~~-a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~----- 101 (225)
T COG1842 28 MLEQAIRDMESELAKARQALAQAI-ARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA----- 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-----
Confidence 333333333444444444443322 3455677778888888888888888763 345555553333333333333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI-NPMINLDMLIKLIQD 185 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLl-g~~~DlDrLi~mLEE 185 (1642)
.+...-.....+.+..|.+.+..+...|.+++.+....++....-+++.. ||..+..+=. +.+.-|+|+-..+++
T Consensus 102 --~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~-v~~~~~~~s~~sa~~~fer~e~kiee 177 (225)
T COG1842 102 --KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEK-VNRSLGGGSSSSAMAAFERMEEKIEE 177 (225)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 33333444555566666666666666666666666666666666666654 3444433333 355667776655544
No 43
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=85.49 E-value=26 Score=34.95 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=31.1
Q ss_pred eeehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHH
Q psy16785 2 VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLR 70 (1642)
Q Consensus 2 ~~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LR 70 (1642)
|.|.||.+|+.+-....|+.+ |.=|....+..|.+.+....+ ...+..+|+.+|.+.+.-.
T Consensus 12 i~Flil~~il~~~~~~pi~~~-------l~~R~~~I~~~l~~a~~~~~~-a~~~~~e~~~~l~~a~~ea 72 (156)
T PRK05759 12 IAFLILVWFIMKFVWPPIMKA-------LEERQKKIADGLAAAERAKKE-LELAQAKYEAQLAEARAEA 72 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345555555444434444332 222334444444444443332 2367888998888876543
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.28 E-value=24 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=19.2
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHH
Q psy16785 41 LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYE 74 (1642)
Q Consensus 41 L~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYE 74 (1642)
+..|-..|.+....|+.+|..=..-+..|.+++.
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~ 180 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLP 180 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777655544444444443
No 45
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=85.26 E-value=24 Score=37.81 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHH
Q psy16785 38 KTRLKDVEKKLLESP------EEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 38 K~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~ 68 (1642)
..|=+.|++++.+.. ..+..+|+++|.+.|.
T Consensus 78 ~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~ 114 (205)
T PRK06231 78 NKRKELIEAEINQANELKQQAQQLLENAKQRHENALA 114 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554322 3778899999988774
No 46
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.19 E-value=14 Score=46.65 Aligned_cols=138 Identities=24% Similarity=0.227 Sum_probs=99.1
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHH
Q psy16785 837 SNILATTRSVILPLVSDLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELA 910 (1642)
Q Consensus 837 ~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Er------s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~a 910 (1642)
++-|.....--.+++..++++|++.|..|.+= .++.+..|+-||.+.+....--+-|...++.+... -..
T Consensus 605 K~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~----l~~ 680 (769)
T PF05911_consen 605 KEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEE----LQS 680 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHH
Confidence 33444444445578888999999998887654 78888999999999988888888888776665555 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh----------hhHH-HHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ----------LKDD-EINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 911 kn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve----------~~~d-Ei~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
|-..|+.+|...+...+.-.-|+.+|++++.+...+.. .+++ ||+.--++|+.|+.=.-.|-.|+-.+
T Consensus 681 Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksL 759 (769)
T PF05911_consen 681 KISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSL 759 (769)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777777766666667788888888888776543 3333 88888888888887777776666443
No 47
>PRK10698 phage shock protein PspA; Provisional
Probab=85.08 E-value=30 Score=37.66 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhccC------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Er------s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
-|+-.+++|+..+.+= ---.+..+++|+..+...-.-|+.|++.|=-.-. ..||+.+|.++.--.
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~----EdLAr~AL~~K~~~~----- 98 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEK----EDLARAALIEKQKLT----- 98 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHH-----
Confidence 3444555555555443 1112456778888888888888888887533221 359999887443211
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 973 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~ 973 (1642)
++...|+.++......++.+...+..|+.++...++....|..
T Consensus 99 ----~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 99 ----DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222444444444444444444444444444444444444433
No 48
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.06 E-value=6.9 Score=42.00 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHH
Q psy16785 38 KTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKL 69 (1642)
Q Consensus 38 K~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~L 69 (1642)
..|=..|.+.|.+-+ ..+..+|+++|.+.|.=
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555333 37888999999888753
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.60 E-value=34 Score=39.75 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCC
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPM 173 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~ 173 (1642)
...+..-..+.+.++..+.+|+..+.....++..+.+++.....+.+.+..+..... .|..++.+.+
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~-~i~~~~~~~g 416 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRG-IVTDLLKDSG 416 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 334555556667777778888777777777888888888777777777776654432 2444444433
No 50
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.44 E-value=37 Score=34.84 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=28.9
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 982 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LF 982 (1642)
+.=.+.++++.+++..+.+++...+.+...+...+...+.+...+...+.-.+.+-
T Consensus 133 ~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 133 DSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444455555555555555555555555555555555555554443
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.83 E-value=72 Score=34.88 Aligned_cols=115 Identities=23% Similarity=0.322 Sum_probs=52.4
Q ss_pred HHHHHHhccCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy16785 859 KDVEKKLLESPEEIKIEYEKQMTNYKKLRE-LYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENK 937 (1642)
Q Consensus 859 ~qIE~sL~Ers~dLr~EYERQL~NIR~LR~-LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlE 937 (1642)
.++|..+..+..+++....+.-..+..++. +=+-|..+..+.. .|..-.++|+-|++.|.+....+..+.. .+.
T Consensus 187 ~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~--el~~l~~~~~~Le~~l~~le~~~~~~~~---~~~ 261 (312)
T PF00038_consen 187 EELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQA--ELESLRAKNASLERQLRELEQRLDEERE---EYQ 261 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred hhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhh--hhhccccchhhhhhhHHHHHHHHHHHHH---HHH
Confidence 445544444444444444443333333332 1122223322222 2244445555555555555555543333 233
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 938 KQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 938 e~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
..|..++.++..+..++.....++.....-+..|..|++.-
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555555555555555555555555555543
No 52
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=82.83 E-value=19 Score=37.01 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=29.6
Q ss_pred eeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16785 29 MVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAA 78 (1642)
Q Consensus 29 Ml~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaR 78 (1642)
||.=|.......|.+.|+...+ ...+..+|+++|.+.+.=.+-+-..++
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~e-A~~~~~e~e~~L~~a~~ea~~ii~~A~ 94 (175)
T PRK14472 46 ALEEREKGIQSSIDRAHSAKDE-AEAILRKNRELLAKADAEADKIIREGK 94 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555444 347889999999998865554443333
No 53
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=82.69 E-value=17 Score=35.63 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCCh
Q psy16785 956 NLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINL 993 (1642)
Q Consensus 956 ~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDL 993 (1642)
.+.+++...+++.+.-...-.+|=+.||.+++|+++|.
T Consensus 55 ~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdW 92 (106)
T PF05837_consen 55 ELSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDW 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44556666666777777788889999999999999886
No 54
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.66 E-value=14 Score=39.37 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=60.3
Q ss_pred eehhhHHHHHHHHHHHhhcC---ch-HH-H-HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 32 FKVSDLKTRLKDVEKKLLES---PE-EI-K-IEYEKQMTNYK-KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKE 104 (1642)
Q Consensus 32 ~keaQLK~KL~EIE~SlaE~---~~-DL-R-~EYEKQL~NIR-~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e 104 (1642)
=||.|.|.+..++|..++.. .. .. + .+.+ ...|+- -|..|.||++|.+.+.--| .++-
T Consensus 23 ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e-~s~dLe~~l~rLeEEqqR~~~L~qvN---------~lLR----- 87 (182)
T PF15035_consen 23 AKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEE-HSPDLEEALIRLEEEQQRSEELAQVN---------ALLR----- 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcCccccccccccc-CcccHHHHHHHHHHHHHhHHHHHHHH---------HHHH-----
Confidence 36788999999999999532 00 00 1 0111 111221 7899999999999987766 2221
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 105 IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 143 (1642)
Q Consensus 105 ~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~ 143 (1642)
+.|......|..|..-+++|-.++..+.+|+......
T Consensus 88 --eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~ 124 (182)
T PF15035_consen 88 --EQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAE 124 (182)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333344566777778888888888887777765543
No 55
>KOG0963|consensus
Probab=82.04 E-value=1.4e+02 Score=37.75 Aligned_cols=151 Identities=21% Similarity=0.245 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES-PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 927 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er-s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLq 927 (1642)
.+..+||..|.+++..|.+- ..+++ -.+--+=++.+-++-+++.+-+...-+....++.| ...+..+++.+
T Consensus 121 ~e~~~lk~~lee~~~el~~~k~qq~~--v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~------e~e~~L~~~~~ 192 (629)
T KOG0963|consen 121 EENEELKEELEEVNNELADLKTQQVT--VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWA------EREAGLKDEEQ 192 (629)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 55668999999998888764 11111 11111223444444444444222222221122222 22333445555
Q ss_pred HHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHH-------------------------hhhcHHHHHHhHHHHhHHHHHH
Q psy16785 928 AQLEKYKENKKQILEMEKNIQLKDDEINNLNEN-------------------------LTSSLAENHILNSQMTLVNNLF 982 (1642)
Q Consensus 928 ae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~-------------------------l~~tkaE~r~L~~QM~lVN~LF 982 (1642)
+-+++++.+++.|..|+..+..-+.++..++.+ +-....||..|..|...+|.=-
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 556677777777777766655555444444333 3344455666666666666433
Q ss_pred HHhhcCCCCChHHHHHHH----HHhHHHHHHH
Q psy16785 983 SNMLINPMINLDMLIKLI----QDNYLLIIDL 1010 (1642)
Q Consensus 983 SqmLLG~~iDLDrL~~lL----EENr~LL~dM 1010 (1642)
.+ |...|+|.+...| -+|-.|..|+
T Consensus 273 ~~---~~~~~i~~~~~~L~~kd~~i~~L~~di 301 (629)
T KOG0963|consen 273 KL---AKIDDIDALGSVLNQKDSEIAQLSNDI 301 (629)
T ss_pred hh---ccCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 32 3556777766555 4677777776
No 56
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=81.98 E-value=59 Score=32.59 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh-----------hhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 908 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ-----------LKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 908 e~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve-----------~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
|+.+.+=.-..|...+.++..-......++.....+...+. .+..+|..++..|......+..|.+|+-
T Consensus 50 El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 50 ELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444344555555555333333344433333333333 2334455555555555555555555554
Q ss_pred HH
Q psy16785 977 LV 978 (1642)
Q Consensus 977 lV 978 (1642)
.+
T Consensus 130 ~l 131 (132)
T PF07926_consen 130 SL 131 (132)
T ss_pred hc
Confidence 43
No 57
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=81.96 E-value=11 Score=37.03 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCH
Q psy16785 140 LNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINL 176 (1642)
Q Consensus 140 l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~Dl 176 (1642)
+.+++.....+...-...-.++=+.||.++.|+++|.
T Consensus 56 ~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdW 92 (106)
T PF05837_consen 56 LSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDW 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4455666666667777888899999999999999986
No 58
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=81.72 E-value=59 Score=37.86 Aligned_cols=58 Identities=29% Similarity=0.297 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhcHHHHHHhH-----HHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 942 EMEKNIQLKDDEINNLNENLTSSLAENHILN-----SQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 942 ~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~-----~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
+|.+.++.+..+...+...|.....|+-+|. .|=.+||.|..+| .+|-.|++.|=..+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm-----------~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQM-----------DKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3333333333333333333333334444443 3445677776654 34555666554443
No 59
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.94 E-value=19 Score=45.58 Aligned_cols=119 Identities=25% Similarity=0.251 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhcCch------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy16785 37 LKTRLKDVEKKLLESPE------EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL-AKNALLEAKLKEIQEEI 109 (1642)
Q Consensus 37 LK~KL~EIE~SlaE~~~------DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~-~KndLeEaKl~e~~~el 109 (1642)
++++|++.|.+|.++.+ +.+..||-||.+.+...+--+-|...++.+...++.++. ....|+..|. ..
T Consensus 622 ~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~-----~~ 696 (769)
T PF05911_consen 622 LKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERA-----LS 696 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cc
Confidence 36788888888886554 778899999999999999999999999999988887443 2333332222 12
Q ss_pred HHHHHHhhhHHHHHHHHHHh----------hhhhHH-HHHHHHHHhhhcHHHHHHhHHHHHH
Q psy16785 110 QAQLEKYKENKKQILEMEKN----------IQLKDD-EINNLNENLTSSLAENHILNSQMTL 160 (1642)
Q Consensus 110 qaE~eK~K~leeri~~LEke----------Vetk~d-Ei~~l~e~l~s~~aE~r~L~aQM~~ 160 (1642)
+.-.-|..+|+.++.+...+ ...+++ ||.---+++++|+.=.-.|-.|+-+
T Consensus 697 ~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLks 758 (769)
T PF05911_consen 697 EELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKS 758 (769)
T ss_pred hhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22234555666666655544 344555 8888888999998777767666644
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.78 E-value=49 Score=33.93 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=24.0
Q ss_pred HhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHH
Q psy16785 115 KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNL 164 (1642)
Q Consensus 115 K~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~L 164 (1642)
..+++.+.+..|.++++...+++..+...+.....+...+...+.-.+.+
T Consensus 138 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 138 SIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555544444433
No 61
>PF13166 AAA_13: AAA domain
Probab=80.78 E-value=86 Score=37.86 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC-CCCChH
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN-PMINLD 994 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG-~~iDLD 994 (1642)
+...+..+..-.+..+.++..+..+++.+..+..++..++.++....+.......-+..||..+..+ | ..+.|+
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~--g~~~~~l~ 479 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL--GFSNFSLE 479 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCeEEE
Confidence 3444444544455566777777888888888888888888877777777776777788899999988 7 555544
No 62
>KOG4643|consensus
Probab=80.58 E-value=1.1e+02 Score=40.36 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=41.6
Q ss_pred ceeeeehhhHHHHHHHHHHHhhcCch---HHHHHHHHHHHhHHHHHHHHHHH
Q psy16785 28 SMVVFKVSDLKTRLKDVEKKLLESPE---EIKIEYEKQMTNYKKLRELYEQR 76 (1642)
Q Consensus 28 qMl~~keaQLK~KL~EIE~SlaE~~~---DLR~EYEKQL~NIR~LRqLYEER 76 (1642)
.-|++|..+|-.++.++=+.+++++. +|..|-++=+.-+++++.-|.+-
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55888889999999999999887765 89999999999999998888754
No 63
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.38 E-value=1.2e+02 Score=36.42 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16785 851 VSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKLRELYEQRAA 895 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~LR~LYEER~R 895 (1642)
+..|+.||...+..+.-- --....+|-+..-+...+++.-++|..
T Consensus 157 ~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 157 PRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777666544 333345676766666666666666655
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.97 E-value=1e+02 Score=34.13 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 950 KDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 950 ~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
...++..++.++...+++...++.++..
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=79.91 E-value=1.3e+02 Score=37.35 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHh---hhhccCCCCCcccccCCCCCcCcccccccc
Q psy16785 1236 YELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFAL---RRLQYDGGRSTSESGISTDTEDDNVEIVET 1312 (1642)
Q Consensus 1236 YeLQqKRrLLsELKeELEYCReKW~~AR~KN~eSE~qwk~LR~EFA~---RK~~~d~~nnSaESGySDe~p~d~~e~~es 1312 (1642)
.+|-..||.|+|||.-|..+-.-=++.++.+.+--+.-..|+..|.- -|-..+..-.-.+.+++.-. --+.+++|
T Consensus 410 vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s 487 (546)
T PF07888_consen 410 VQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAAALTEDATAASPPS--CPADLSDS 487 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCccccccCCC--CCcCCCCc
Confidence 45667777777777766665544444555555555555566655421 12111222122233343333 33457777
Q ss_pred ccCCccc
Q psy16785 1313 NDESEDD 1319 (1642)
Q Consensus 1313 ndese~d 1319 (1642)
.|++-.|
T Consensus 488 ~de~p~~ 494 (546)
T PF07888_consen 488 EDESPED 494 (546)
T ss_pred ccCCccc
Confidence 7776543
No 66
>PRK11281 hypothetical protein; Provisional
Probab=79.57 E-value=1.5e+02 Score=39.49 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH--HHHHHHhhcC------CCCChHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV--NNLFSNMLIN------PMINLDMLI 997 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV--N~LFSqmLLG------~~iDLDrL~ 997 (1642)
++.+++.|..|-+++..+-.++.....+....+..+......-+.+++|+.++ +.+||..|.. .+..++.|.
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~ 359 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLA 359 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHH
Confidence 56667777788888888878887777777777777777777778788887775 4578877776 445556676
Q ss_pred HHHHHhH
Q psy16785 998 KLIQDNY 1004 (1642)
Q Consensus 998 ~lLEENr 1004 (1642)
.-+.+.|
T Consensus 360 ~~iAdlr 366 (1113)
T PRK11281 360 DRIADLR 366 (1113)
T ss_pred HHHHHHH
Confidence 6666666
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.47 E-value=1.3e+02 Score=39.54 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHH
Q psy16785 967 ENHILNSQMTLVNNLFSNMLINPMINLDMLIKL 999 (1642)
Q Consensus 967 E~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~l 999 (1642)
....+++++.-+..-|.+=|.|.++|.++|.++
T Consensus 744 ~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l 776 (1201)
T PF12128_consen 744 AKQEAKEQLKELEQQYNQELAGKGVDPERIQQL 776 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 445667788888899999999999998777655
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.37 E-value=19 Score=39.04 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=14.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhH
Q psy16785 122 QILEMEKNIQLKDDEINNLNENLTSSLAENHILN 155 (1642)
Q Consensus 122 ri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~ 155 (1642)
.+.+|+.+.+.+..++..++++.....++...++
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 69
>KOG0018|consensus
Probab=79.02 E-value=22 Score=46.33 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=77.2
Q ss_pred ceeeeeh--hhHHHHHHHHHHHhhcCch--------------------HHHHHHHHHHHhHHHHHH--HHHHHHHH----
Q psy16785 28 SMVVFKV--SDLKTRLKDVEKKLLESPE--------------------EIKIEYEKQMTNYKKLRE--LYEQRAAA---- 79 (1642)
Q Consensus 28 qMl~~ke--aQLK~KL~EIE~SlaE~~~--------------------DLR~EYEKQL~NIR~LRq--LYEERaRa---- 79 (1642)
.||.|++ +-+|.||..|++.+..+.. -.+.+|++.|+++++.|+ |=..=..+
T Consensus 290 ~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~ 369 (1141)
T KOG0018|consen 290 ELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYE 369 (1141)
T ss_pred HHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH
Confidence 4666776 5557888888877774332 346678888888888665 11000000
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 80 ---AELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 156 (1642)
Q Consensus 80 ---Aa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~a 156 (1642)
.++..+++..+... +.-.+..|+.|--+.++..++++++-.+.-.|+.+...+++|...+.+....-..++.
T Consensus 370 rlk~ea~~~~~~el~~l-----n~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~ 444 (1141)
T KOG0018|consen 370 RLKEEACKEALEELEVL-----NRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKH 444 (1141)
T ss_pred HHHHHHhhhhHHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111111111111 1112335567777889999999999999999988888888888888887777666654
No 70
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=78.92 E-value=25 Score=38.11 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=24.1
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE 71 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRq 71 (1642)
|.......|.+.|+...+. ..++.+|+.+|.+.+.=..
T Consensus 37 R~~~I~~~l~~Ae~~~~eA-~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 37 REKKIAGELADADTKKREA-EQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4455555566555554443 3778899999998765444
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.51 E-value=1.4e+02 Score=37.22 Aligned_cols=9 Identities=22% Similarity=0.482 Sum_probs=5.3
Q ss_pred cccceeeee
Q psy16785 25 SSTSMVVFK 33 (1642)
Q Consensus 25 ~sKqMl~~k 33 (1642)
.+.-||+|.
T Consensus 127 ~~~DmLvV~ 135 (546)
T PF07888_consen 127 GNSDMLVVT 135 (546)
T ss_pred CCcceEEEe
Confidence 455677664
No 72
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.06 E-value=61 Score=40.32 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=29.4
Q ss_pred eehhhhHHHHHHHhhhhhhHHHHhhhhHHHHHHHHhh
Q psy16785 1160 SVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRL 1196 (1642)
Q Consensus 1160 SVSKTyIRLKDLILEKKsL~KEtNRLKtLN~HLE~RL 1196 (1642)
.+.|-==++.||+-||-.|+-++.+|.-++..|...=
T Consensus 415 amekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et 451 (617)
T PF15070_consen 415 AMEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGET 451 (617)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCc
Confidence 3445566778999999999999999999888886543
No 73
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.04 E-value=91 Score=36.41 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=49.7
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC---CCCChHHHHHHHHHhHHHHHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG---~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
+.+.+++..|+.|+++.-||.+.+..+-...+ .-..=.|.=++.+|-| .-+|||- ++-||+-|=-.+
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk-------~K~~RLN~ELn~~L~g~~~rivDIDa---Li~ENRyL~erl 205 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELVTERDAYK-------CKAHRLNHELNYILNGDENRIVDIDA---LIMENRYLKERL 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCCcccHHH---HHHHHHHHHHHH
Confidence 45667777788888888777777655444444 3344446666888888 5578885 578999999888
Q ss_pred hhcc
Q psy16785 1011 INNH 1014 (1642)
Q Consensus 1011 t~~~ 1014 (1642)
.+..
T Consensus 206 ~q~q 209 (319)
T PF09789_consen 206 KQLQ 209 (319)
T ss_pred HHHH
Confidence 7653
No 74
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=77.84 E-value=20 Score=42.31 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=38.3
Q ss_pred eehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 3 VFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 3 ~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLY 73 (1642)
.|.||.++++|-+.+.+.. ||.=|....+..|.+.|+. ......++.+|+++|.+.+.=.+-.
T Consensus 10 nFlIl~~lL~kfl~~Pi~~-------~l~~R~~~I~~~L~eAe~a-~~ea~~~~~~~e~~L~~Ak~ea~~I 72 (445)
T PRK13428 10 GFAVIVFLVWRFVVPPVRR-------LMAARQDTVRQQLAESATA-ADRLAEADQAHTKAVEDAKAEAARV 72 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554444444433 3444556666777777743 3344589999999999988744433
No 75
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=77.79 E-value=86 Score=31.97 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=24.5
Q ss_pred eehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHH
Q psy16785 32 FKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE 71 (1642)
Q Consensus 32 ~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRq 71 (1642)
=|....+..|.+.++.-.+ ...++.+|+.+|.+.|.=..
T Consensus 39 ~R~~~I~~~l~~Ae~~~~e-a~~~~~e~e~~l~~A~~ea~ 77 (164)
T PRK14473 39 ERTRRIEESLRDAEKVREQ-LANAKRDYEAELAKARQEAA 77 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445555566665554333 34788999999988775433
No 76
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=77.56 E-value=46 Score=34.42 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=33.9
Q ss_pred eehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16785 3 VFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA 77 (1642)
Q Consensus 3 ~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERa 77 (1642)
.|.||..++++-....+..+ |.=|.......|.+.+....+. ..+..||+++|.+.+.=.+-.-+.+
T Consensus 25 ~Flil~~iL~~~~~kpi~~~-------l~~R~~~I~~~l~~Ae~~~~eA-~~~~~e~e~~l~~a~~ea~~ii~~A 91 (173)
T PRK13460 25 TFLVVVLVLKKFAWDVILKA-------LDERASGVQNDINKASELRLEA-EALLKDYEARLNSAKDEANAIVAEA 91 (173)
T ss_pred HHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544444444444333 2223333344444444333221 3788899999998876554443333
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=77.43 E-value=1.1e+02 Score=33.14 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=24.4
Q ss_pred HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 932 KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+.++.+.+...++..|..+..+|..|+..|...+.....++.+|
T Consensus 184 ~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 184 KLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555
No 78
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=77.29 E-value=84 Score=32.83 Aligned_cols=45 Identities=7% Similarity=0.027 Sum_probs=26.1
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAA 78 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaR 78 (1642)
|.......|.+.|....+ ...+..+|+++|.+.+.=++-+-+.++
T Consensus 56 R~~~I~~~l~~Ae~~~~e-A~~~~~e~e~~L~~A~~ea~~ii~~A~ 100 (184)
T CHL00019 56 RKQTILNTIRNSEERREE-AIEKLEKARARLRQAELEADEIRVNGY 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443322 237889999999998865554444443
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.85 E-value=37 Score=36.70 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHI 970 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~ 970 (1642)
..+..+..|+..|+.+.++|...++++...+.+..+
T Consensus 194 ~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 194 FAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 80
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=76.71 E-value=47 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=20.2
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~ 68 (1642)
|....+..|.+.|..-.+ -..++.+|+.+|.+.|.
T Consensus 63 R~~~I~~~l~~Ae~~~~e-A~~~~~eye~~L~~Ar~ 97 (181)
T PRK13454 63 RQGTITNDLAAAEELKQK-AVEAEKAYNKALADARA 97 (181)
T ss_pred HHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333444444444433222 23788999999988874
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.57 E-value=2.7e+02 Score=37.05 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhcc
Q psy16785 1246 NDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQY 1287 (1642)
Q Consensus 1246 sELKeELEYCReKW~~AR~KN~eSE~qwk~LR~EFA~RK~~~ 1287 (1642)
..++.|+..-+++-......+.....+.+.|..+.+.-+...
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777777777777788888888888888887774
No 82
>KOG0243|consensus
Probab=76.17 E-value=76 Score=41.77 Aligned_cols=53 Identities=30% Similarity=0.381 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE 967 (1642)
++++|.+....+..+++-+..|.++...++++++....+++.+++++...++.
T Consensus 460 ~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 460 LEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666666666666666666666555544
No 83
>KOG1962|consensus
Probab=75.66 E-value=25 Score=39.07 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~ 960 (1642)
++.++...+.+|...+++..+|+++.+++..+.+.+-+|..+|+++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 84
>KOG1850|consensus
Probab=75.38 E-value=1.8e+02 Score=34.57 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHHhccC---chHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH-hHhhhHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQM-TNYKKLRELYEQRAAAAEL-EHKTMIEKELAKNALLEAKLKEI 922 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL-~NIR~LR~LYEER~Rvael-e~e~~i~ke~akn~Llqr~L~e~ 922 (1642)
-.-+.+++.-|.+|+++|++- .+-|| ||-..| +-..-|-.=|++|..+-+. .......+++-+..|++-.+-..
T Consensus 108 kea~~~fqvtL~diqktla~~~~~n~klr-e~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a 186 (391)
T KOG1850|consen 108 KEAVEQFQVTLKDIQKTLAEGRSKNDKLR-EDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTA 186 (391)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344667778899999999886 44444 444443 3345566778888877332 22222455555554444333333
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhh
Q psy16785 923 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 986 (1642)
Q Consensus 923 K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmL 986 (1642)
+.+-...+++--.||+.- .+.--++.+...=-+|++++.+-.|--..++.=|+--|.+|+.|=
T Consensus 187 ~~ee~~~~e~~~glEKd~-lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK 249 (391)
T KOG1850|consen 187 KLEEASIQEKKSGLEKDE-LAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFK 249 (391)
T ss_pred HHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333333333333321 122334444455567888888888888899999999999999884
No 85
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.32 E-value=34 Score=37.24 Aligned_cols=37 Identities=5% Similarity=-0.013 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 937 KKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 973 (1642)
Q Consensus 937 Ee~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~ 973 (1642)
+..+.+|+++.+.+..+++.++.++....++...++.
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555554
No 86
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=74.32 E-value=58 Score=33.81 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=25.2
Q ss_pred eehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 32 FKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 32 ~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLY 73 (1642)
=|.+.....|.+.++.-.+.. .++.+|+++|.+.|.=.+-.
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~-~~~~e~e~~l~~a~~ea~~i 89 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQ-KLEEENKQKLKETQEEVQKI 89 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443332 77889999999988644433
No 87
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.17 E-value=61 Score=40.54 Aligned_cols=141 Identities=17% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh---HHH
Q psy16785 831 HSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTM---IEK 907 (1642)
Q Consensus 831 ~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~---i~k 907 (1642)
-+||.++||.+|.++-|++-++-+-.+=+++=.-+ +.+- -+-...|||-|-.+|.+ +-.+|-+| ++|
T Consensus 351 l~t~~~k~i~~t~~~~r~~~~ak~ld~sK~~~~~~--~~d~----t~d~id~i~~l~k~~na----~V~~~N~ri~nf~k 420 (758)
T COG4694 351 LDTENLKNIIETLRSKRLANQAKMLDKSKEMSRNF--KLDS----TKDEIDAIKDLIKKANA----QVVNHNERIKNFEK 420 (758)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhhccchhhcccc--cccc----chhHHHHHHHHHHHHHH----HHHHHhhhhhhHHH
Confidence 37999999999999999987765544433321111 0011 12235677777777653 22333333 355
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 908 ELAKNALLEAKLK---EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 908 e~akn~Llqr~L~---e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
+.++- -.+-++- +-+.+.| +..||..+|+.+..||++..-.+.|+.. |.++++.||.|.
T Consensus 421 ~~~~s-k~~le~~~v~~~~~~VQ-e~~~Y~g~ekk~n~LE~e~kn~~~ev~k--------------ls~ei~~ie~~l-- 482 (758)
T COG4694 421 QKKSS-KEQLEKFLVNEFKSDVQ-EYNKYCGLEKKINNLEKEIKNNQEEVKK--------------LSNEIKEIEKFL-- 482 (758)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhHHHHHH--------------HHHHHHHHHHHH--
Confidence 55542 1111122 2244444 5557777777777777766666655554 667777777664
Q ss_pred hhcCCCCChHHHHHHHH
Q psy16785 985 MLINPMINLDMLIKLIQ 1001 (1642)
Q Consensus 985 mLLG~~iDLDrL~~lLE 1001 (1642)
.|..+-+-.|.+.|+
T Consensus 483 --~~~~~~vke~nq~l~ 497 (758)
T COG4694 483 --VSIKPIVKEINQTLL 497 (758)
T ss_pred --hhchhhHHHHHHHHH
Confidence 444444555555443
No 88
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.96 E-value=1.3e+02 Score=32.07 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=15.6
Q ss_pred CCHHHHHhhchhHHHHHHHHhh
Q psy16785 1105 HIQKEIANNLPKVWRILIELLN 1126 (1642)
Q Consensus 1105 ~s~eEIa~NLPKVWRVLiELLS 1126 (1642)
+.+++|+.-|=-||..+ -||+
T Consensus 192 ~~~~~isaALgyvahlv-~lls 212 (302)
T PF10186_consen 192 LPDEEISAALGYVAHLV-SLLS 212 (302)
T ss_pred CCHHHHHHHHHHHHHHH-HHHH
Confidence 56788888888888744 4666
No 89
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.92 E-value=81 Score=32.58 Aligned_cols=115 Identities=22% Similarity=0.344 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhccC---chHHH-HHHHH-HHHhHHHHHHHHHHHHH-HHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLES---PEEIK-IEYEK-QMTNYKKLRELYEQRAA-AAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Er---s~dLr-~EYER-QL~NIR~LR~LYEER~R-vaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
-|+.+|+.++..|... .++|. +.|+. |++|. +|..=-|||.. +..|.... .+. + -.|.-.|..+
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~-~l~~kIeERn~eL~~Lk~~~-------~~~-v-~~L~h~keKl 86 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQ-QLNEKIEERNKELLKLKKKI-------GKT-V-QILTHVKEKL 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHH-H-HHHHHHHHHH
Confidence 3555555555555544 45555 55653 34443 44444455532 23332222 111 2 2355555556
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
..-......+...+...+..+...++++...+.+..........|+.++|+
T Consensus 87 ~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 87 HFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 655555555555555555555555555555544444444444444444443
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.69 E-value=71 Score=35.97 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh--cHHHHHHhHHHHhHHH
Q psy16785 905 IEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS--SLAENHILNSQMTLVN 979 (1642)
Q Consensus 905 i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~--tkaE~r~L~~QM~lVN 979 (1642)
+.+.+.| ++.+++..+..+.+-+...+.++.++..++.+++....-++..+++++. +.-+.++|+-+|...+
T Consensus 29 ~~~~l~k---~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak 102 (239)
T COG1579 29 IRKALKK---AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAK 102 (239)
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4444444 2234555566666666666677777777777777777777777777653 3344556666666544
No 91
>PF13166 AAA_13: AAA domain
Probab=73.50 E-value=1.8e+02 Score=35.20 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC
Q psy16785 92 LAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 171 (1642)
Q Consensus 92 ~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg 171 (1642)
.+++.+..+-++++...+.+-....++++..+..+++.+.++..++..++.++............-+..+|..+..+ |
T Consensus 395 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~--g 472 (712)
T PF13166_consen 395 ELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL--G 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--C
Confidence 33444444444444445544445566677777777777778888777777777777766666677778899999888 5
Q ss_pred -CCCCHH
Q psy16785 172 -PMINLD 177 (1642)
Q Consensus 172 -~~~DlD 177 (1642)
.++.|+
T Consensus 473 ~~~~~l~ 479 (712)
T PF13166_consen 473 FSNFSLE 479 (712)
T ss_pred CCCeEEE
Confidence 444443
No 92
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=73.06 E-value=48 Score=40.71 Aligned_cols=90 Identities=19% Similarity=0.300 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhh--
Q psy16785 872 IKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQL-- 949 (1642)
Q Consensus 872 Lr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~-- 949 (1642)
|+.=|..++.++-+..++++-++..-..+... |.+.|+....++++-.+..+.....+..|++++++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~a-----------L~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRA-----------LQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777766665555555 22334433333333333344444444444444443
Q ss_pred ---------hHHHHHHHHHHhhhcHHHHHHhH
Q psy16785 950 ---------KDDEINNLNENLTSSLAENHILN 972 (1642)
Q Consensus 950 ---------~~dEi~~l~e~l~~tkaE~r~L~ 972 (1642)
+-+-+.+|+++|.....|...|+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556666666666666655554
No 93
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=72.77 E-value=67 Score=32.81 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=26.4
Q ss_pred eeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHH
Q psy16785 29 MVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLR 70 (1642)
Q Consensus 29 Ml~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LR 70 (1642)
|+.=|....+..|.+.|+...+ ...++.||+++|...|.=.
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~e-a~~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 50 VLDERKEYIRKNLTKASEILAK-ANELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666655444 2378899999999888633
No 94
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=72.56 E-value=1.4e+02 Score=31.91 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=9.0
Q ss_pred CeeehhhHHHHHhhhhhc
Q psy16785 1 MVVFTILSMIVFKNFILT 18 (1642)
Q Consensus 1 ~~~~~~~~~~~~~~~v~t 18 (1642)
|+|++++.++++--++|-
T Consensus 1 ~~ii~~i~~~~vG~~~G~ 18 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGY 18 (201)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 455555555554444443
No 95
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.47 E-value=1.6e+02 Score=32.64 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 132 LKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 132 tk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
....++..++.++.....+...+.+++..+.
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 96
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.95 E-value=9.2 Score=46.09 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 923 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 923 K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+..|+..+.|.++||++++.|..+++.+......++++|....+|...|+.||
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999998888777778888888888889999999887
No 97
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=71.68 E-value=6.2 Score=40.66 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=52.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 879 QMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 879 QL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
+|.++.-||.+|-....... +..+.+...+.+. +...+-.|.-+.+|+.++..++.||..|+
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~-----------~~~~~l~a~~~e~-------qsli~~yE~~~~kLe~e~~~Kdsei~~Lr 114 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPS-----------PQVARLAAEIQEQ-------QSLIKTYEIVVKKLEAELRAKDSEIDRLR 114 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCC-----------ccccccccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666655544322 1112233333333 34445788899999999999999999999
Q ss_pred HHhhhcHHHHHHhHH
Q psy16785 959 ENLTSSLAENHILNS 973 (1642)
Q Consensus 959 e~l~~tkaE~r~L~~ 973 (1642)
++|.....-++.|..
T Consensus 115 ~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 115 EKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999998888877654
No 98
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.65 E-value=35 Score=36.70 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHH
Q psy16785 54 EIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIE-KELAK 94 (1642)
Q Consensus 54 DLR~EYEKQL~NIR~LRqLYEERaRa-Aa~e~e~LiR-le~~K 94 (1642)
-+|..|+..++--++-|. +|.++ ..+.-+..|+ |...+
T Consensus 54 ~VRkqY~~~i~~AKkqRk---~~~~~~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK---ELKREAGSLTLQDVISFLQNLK 93 (161)
T ss_pred HHHHHHHHHHHHHHHHHh---ccccCcccCCHHHHHHHHHHHH
Confidence 799999999988887776 44443 4455555565 44444
No 99
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.24 E-value=84 Score=38.77 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----H
Q psy16785 52 PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE-KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILE----M 126 (1642)
Q Consensus 52 ~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR-le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~----L 126 (1642)
+.-|+.=|+.++.++-+..++++-++..=..+.+.|+. +..+.+. .+-..++|..-..+...|++.+.. -
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e-----k~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE-----KESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34579999999999999999999999999999999887 4433332 222223333333333333333222 3
Q ss_pred HHhhhhhHHHHHHHHHHhhhcHHHHHHhH
Q psy16785 127 EKNIQLKDDEINNLNENLTSSLAENHILN 155 (1642)
Q Consensus 127 EkeVetk~dEi~~l~e~l~s~~aE~r~L~ 155 (1642)
|..+..+-+-|..||++++.-..|-..|+
T Consensus 486 E~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 486 EEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677888888888888888877776
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.83 E-value=41 Score=41.57 Aligned_cols=92 Identities=24% Similarity=0.357 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHH
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIK 998 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~ 998 (1642)
..+...+++.=++....+..++..++.++.....++.++.+++....+++..+..++.+--.++ .||..+.-++.+|..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~-~lL~d~e~ni~kL~~ 401 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTV-ELLPDAEENIAKLQA 401 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcHHHHHHHHH
Confidence 3344444454445555888899999999999999999999999999999999999999766665 456667788899999
Q ss_pred HHHHhHHHHHHHh
Q psy16785 999 LIQDNYLLIIDLI 1011 (1642)
Q Consensus 999 lLEENr~LL~dMt 1011 (1642)
+++.+..=+..|.
T Consensus 402 ~v~~s~~rl~~L~ 414 (594)
T PF05667_consen 402 LVEASEQRLVELA 414 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777774
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.80 E-value=1.1e+02 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 41 LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 41 L~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLY 73 (1642)
|+-|...|.+--..|+.+|+.=+..+-.|-.++
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~ 174 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIK 174 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666665444444443333
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=70.06 E-value=26 Score=36.07 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=39.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhc--CCCCChHHHHHHHHHh
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI--NPMINLDMLIKLIQDN 1003 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLL--G~~iDLDrL~~lLEEN 1003 (1642)
..+-+.+...++..++.|+.....+..||..|+.++.....+...+..+|.-++..+...=- ++.=.|.|=+++|++=
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHH
Confidence 33344444445555555555555555555555555555555555555554444433322110 1111677778888764
Q ss_pred HH
Q psy16785 1004 YL 1005 (1642)
Q Consensus 1004 r~ 1005 (1642)
.+
T Consensus 89 le 90 (143)
T PF12718_consen 89 LE 90 (143)
T ss_pred HH
Confidence 43
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.37 E-value=1.3e+02 Score=30.23 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHhhhcHHHHHHhHHHHHHH
Q psy16785 132 LKDDEINNLNENLTSSLAENHILNSQMTLV 161 (1642)
Q Consensus 132 tk~dEi~~l~e~l~s~~aE~r~L~aQM~~V 161 (1642)
.+..+|..++..|.....-+..|+.|+-.+
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444445555555555555555443
No 104
>KOG4674|consensus
Probab=69.20 E-value=2e+02 Score=40.09 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH
Q psy16785 80 AELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159 (1642)
Q Consensus 80 Aa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~ 159 (1642)
..-+|+.++++..-=|.|.|-- +-+++++.+..+|.++|.+.+.+|..++.-++.++..+.++++.+.+|...|..+|-
T Consensus 1210 s~~e~~~i~~~v~~vNll~EsN-~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~ 1288 (1822)
T KOG4674|consen 1210 SDDEHKEILEKVEEVNLLRESN-KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEND 1288 (1822)
T ss_pred hhhhhhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666444444433321 135678888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhC-CCCCHHHHHHHHHHhHHHHHHHHhhcC-CcchhHHHHHHhhhchhhHHHhh-----hh---hhHHHH
Q psy16785 160 LVNNLFSNMLIN-PMINLDMLIKLIQDNYLLIIDLINNHE-INDTVSLLVDLEKKIDQETLAIQ-----ND---KQLKQL 229 (1642)
Q Consensus 160 ~VN~LFSqlLlg-~~~DlDrLi~mLEENr~LL~dMt~nE~-~SdtasLL~dLv~qi~eeS~avE-----~~---k~~eeI 229 (1642)
--=.=|--++.- ..+|.--+.++..+++.|=..+..++. +-|+...|-.+-+++-...++-. .. .+++.|
T Consensus 1289 ~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~ 1368 (1822)
T KOG4674|consen 1289 RWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDL 1368 (1822)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666556654 788888899999999999999998887 66777777777755444333321 11 236666
Q ss_pred hhccchhHHHHHHH
Q psy16785 230 ENYETPMSSAMVEA 243 (1642)
Q Consensus 230 i~NLPKVWkvLmEL 243 (1642)
..-|--.|+-.-+-
T Consensus 1369 ~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1369 KTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666677655443
No 105
>PRK04406 hypothetical protein; Provisional
Probab=69.02 E-value=20 Score=33.83 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
.++++|..||..+.-+.+-|+.|+..+..-+.+...|+.+|..+..=+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999999999998887554433
No 106
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.96 E-value=35 Score=33.56 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=41.9
Q ss_pred HHHhHhHHHHHHHHHHhhhhh--HHHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 930 LEKYKENKKQILEMEKNIQLK--DDEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~--~dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
.++....+.++..+|.+++.+ .+++..|+-.++...-+.+.+..++..|+
T Consensus 41 ~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 41 EERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344456788999999999999 89999999999999999999998887764
No 107
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=68.96 E-value=1.4e+02 Score=30.39 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16785 53 EEIKIEYEKQMTNYKKLRELYEQRAA 78 (1642)
Q Consensus 53 ~DLR~EYEKQL~NIR~LRqLYEERaR 78 (1642)
..++.+|+.+|.+.+.=..-+-+.++
T Consensus 56 ~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 56 RELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999998865544444433
No 108
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.66 E-value=1.7e+02 Score=32.59 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=60.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHH
Q psy16785 874 IEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDE 953 (1642)
Q Consensus 874 ~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dE 953 (1642)
...++++........=|+.+++.|=-.-. ..||+-+|-+. ....+.+.....-+..+.+.+..|+..+..+...
T Consensus 55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~----E~LAr~al~~~--~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~K 128 (225)
T COG1842 55 KQLERKLEEAQARAEKLEEKAELALQAGN----EDLAREALEEK--QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQK 128 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666665322211 24555444311 1111222222333345555666666666666666
Q ss_pred HHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC-CCCChHHHHHHHH
Q psy16785 954 INNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN-PMINLDMLIKLIQ 1001 (1642)
Q Consensus 954 i~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG-~~iDLDrL~~lLE 1001 (1642)
|.+++.+....++....-+.+.. ||..+..+=.| +..-|+|+-..++
T Consensus 129 i~e~~~~~~~l~ar~~~akA~~~-v~~~~~~~s~~sa~~~fer~e~kie 176 (225)
T COG1842 129 IAELRAKKEALKARKAAAKAQEK-VNRSLGGGSSSSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCchhhHHHHHHHHHHHH
Confidence 66666666666666655555554 34444333332 4555666554443
No 109
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.63 E-value=1.5e+02 Score=32.14 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC
Q psy16785 132 LKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 171 (1642)
Q Consensus 132 tk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg 171 (1642)
.+...+..++.++.......-.|.-++.+.|+.|+.-|.-
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444444444444445555666666677777666653
No 110
>KOG0994|consensus
Probab=68.54 E-value=4.4e+02 Score=36.00 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHH--------------HHHhhhcHHHHHHhHHHHhHH
Q psy16785 913 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL--------------NENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 913 ~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l--------------~e~l~~tkaE~r~L~~QM~lV 978 (1642)
.+.+..|..++++..+.-++..+...++.+|++.++.++-++.+- +.+-...+...+.|+....+|
T Consensus 1594 ~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1594 RLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELV 1673 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777888888888888888899999999888877554332 122222333456899999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 979 NNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 979 N~LFSqmLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
+.|...-..|+----.|--+|.+|-..||-+-
T Consensus 1674 ~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a 1705 (1758)
T KOG0994|consen 1674 DRLLEKRMEGSQAARERAEQLRTEAEKLLGQA 1705 (1758)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999995555556666677777766543
No 111
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.42 E-value=12 Score=45.19 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
-|.+.++|.++|+++++.|.++++++.-...++++++.....|...|++||
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455578899999999999999999888888899999999999999999998
No 112
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=68.26 E-value=1e+02 Score=32.90 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHhHHH
Q psy16785 869 PEEIKIEYEKQMTNYKK 885 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~ 885 (1642)
.+.++.+|+.+|.+.|.
T Consensus 60 Ae~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 60 VEKLNKYYNEEIDKTNT 76 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788899999988764
No 113
>KOG0977|consensus
Probab=68.04 E-value=1.9e+02 Score=35.99 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=84.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy16785 856 TRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKE 935 (1642)
Q Consensus 856 ~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~Kn 935 (1642)
..|..++..++.-+..++.=|+-.|...|.+ -++=++ ...+.+..|.|-.....=+..++...........++...
T Consensus 70 ~di~~lr~~~~~~ts~ik~~ye~El~~ar~~---l~e~~~-~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~ 145 (546)
T KOG0977|consen 70 HDINLLRGVVGRETSGIKAKYEAELATARKL---LDETAR-ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD 145 (546)
T ss_pred HHHHHHHhhccCCCcchhHHhhhhHHHHHHH---HHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333444444444667777788776655543 222111 112222333443333444555666666667777777788
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 988 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG 988 (1642)
....+..++.++.+..-.|..+++++...++|.-.|..++..+-...-+-.++
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888889999999999999988888888888777666665
No 114
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=68.03 E-value=1.3e+02 Score=35.36 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHhhhcHHHHHHhHHHHhHH
Q psy16785 957 LNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 957 l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
++.-+...+.|.+++.-++|||
T Consensus 333 IKqAl~kLk~EI~qMdvrIGVl 354 (359)
T PF10498_consen 333 IKQALTKLKQEIKQMDVRIGVL 354 (359)
T ss_pred HHHHHHHHHHHHHHhhhhhhee
Confidence 3444455566666666666654
No 115
>PRK04406 hypothetical protein; Provisional
Probab=67.89 E-value=22 Score=33.59 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
.++.||..||..+.-..+.|+.||..+..-+.+-..|..+|..+..=+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999999999998887554433
No 116
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=67.37 E-value=1.1e+02 Score=32.48 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHHHHHH
Q psy16785 37 LKTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 37 LK~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~LRqLY 73 (1642)
|..|=+.|.+.|.+-+ ..|..+|+++|.+.|.=++-.
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~I 75 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQM 75 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777776333 389999999998777655443
No 117
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=67.07 E-value=1.3e+02 Score=31.45 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy16785 906 EKELAKNALLEAKLKEIQEEIQAQLEKYKE 935 (1642)
Q Consensus 906 ~ke~akn~Llqr~L~e~K~eLqae~eK~Kn 935 (1642)
..-.+.+.-|+++++..+++|..++.|.+.
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566778888888888888777665
No 118
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=67.00 E-value=50 Score=31.55 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=36.2
Q ss_pred eehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHH
Q psy16785 3 VFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKL 69 (1642)
Q Consensus 3 ~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~L 69 (1642)
.|.||..++++-..+.|+.+ +.=|.+..+..+.+.+....+. ..+..+|+++|.+.+.=
T Consensus 8 ~Flil~~~l~~~~~~pi~~~-------l~~R~~~I~~~~~~a~~~~~ea-~~~~~e~~~~l~~a~~e 66 (132)
T PF00430_consen 8 NFLILFFLLNKFLYKPIKKF-------LDERKAKIQSELEEAEELKEEA-EQLLAEYEEKLAEAREE 66 (132)
T ss_dssp HHHHHHHHHHHHTHHHHHHH-------CS--S-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45555555555444555443 4446677777777777766653 36778999999887753
No 119
>KOG0980|consensus
Probab=66.66 E-value=1.8e+02 Score=38.06 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhh
Q psy16785 871 EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLK 950 (1642)
Q Consensus 871 dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~ 950 (1642)
.++.=|..+-++=.-|-.=|-.++.-.++....+++.+.-+-.|= ..|++.++....-.-|+....+.+..|+.++..+
T Consensus 428 klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~-d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 428 KLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLN-DQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555556666666665554443333 6666666665555556777777777777777777
Q ss_pred HHHHHHHHHHhhh
Q psy16785 951 DDEINNLNENLTS 963 (1642)
Q Consensus 951 ~dEi~~l~e~l~~ 963 (1642)
..+++.++..+..
T Consensus 507 ~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 507 LIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHhhh
Confidence 7777777766443
No 120
>PRK01156 chromosome segregation protein; Provisional
Probab=66.58 E-value=2.5e+02 Score=35.29 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.9
Q ss_pred hhhccceEEeeecceeEE
Q psy16785 1441 QFLNNKITIKTIGGKIKV 1458 (1642)
Q Consensus 1441 ~~~~~~~~~~~~~~~~~~ 1458 (1642)
++...-|.+.-.||.-+|
T Consensus 874 ~~~d~ii~~~~~~~~s~v 891 (895)
T PRK01156 874 SVADVAYEVKKSSGSSKV 891 (895)
T ss_pred HhcCeEEEEEecCCeeEE
Confidence 466666777777776555
No 121
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.57 E-value=3.1e+02 Score=33.49 Aligned_cols=98 Identities=8% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH----------HHHhHHHHHHHHHHHHHhh
Q psy16785 100 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAE----------NHILNSQMTLVNNLFSNML 169 (1642)
Q Consensus 100 aKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE----------~r~L~aQM~~VN~LFSqlL 169 (1642)
.++..+-+.+..|....+..+.....+.+.+.-+......+..++...+.. .+.+..++.-++.-|..+.
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~ 368 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEIT 368 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666555555555555554444444444444444433333 5666777777776666543
Q ss_pred h---CCCCCHHHHHHHHHHhHHHHHHHHhhc
Q psy16785 170 I---NPMINLDMLIKLIQDNYLLIIDLINNH 197 (1642)
Q Consensus 170 l---g~~~DlDrLi~mLEENr~LL~dMt~nE 197 (1642)
- +..+..+.+...+++-..=+..+-...
T Consensus 369 ~~i~~~~~~ysel~e~leel~e~leeie~eq 399 (569)
T PRK04778 369 ERIAEQEIAYSELQEELEEILKQLEEIEKEQ 399 (569)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 355667777777777666666655544
No 122
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.51 E-value=1.1e+02 Score=35.13 Aligned_cols=108 Identities=20% Similarity=0.376 Sum_probs=56.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q psy16785 844 RSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQ-MTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEI 922 (1642)
Q Consensus 844 rsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQ-L~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~ 922 (1642)
+.+.+.-+..+-.-|.+|| +..++..+=|+ |+=|...++.|... +.++++.+. ..|+|...
T Consensus 144 ~~LS~~dl~e~~~~l~DLe------sa~vkV~WLR~~L~Ei~Ea~e~~~~~-~~~e~eke~-----------~~r~l~~~ 205 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLE------SAKVKVDWLRSKLEEILEAKEIYDQH-ETREEEKEE-----------KDRKLELK 205 (269)
T ss_pred hhhhHHHHHHHHHHHHHHH------HcCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHH
Confidence 4555555555555566655 45666776664 44455555555432 223333333 33667777
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 923 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 923 K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
+.+|...+++.+..++.++++...+ +.+...|+....+.-.|..-++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777755555555555555544444 4444444444444444444433
No 123
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.03 E-value=1.6e+02 Score=34.03 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.4
Q ss_pred HHhHHHHHHHh
Q psy16785 1001 QDNYLLIIDLI 1011 (1642)
Q Consensus 1001 EENr~LL~dMt 1011 (1642)
.+.+.+|..++
T Consensus 277 k~~~~~Le~l~ 287 (312)
T smart00787 277 KEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHh
Confidence 34455555554
No 124
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.92 E-value=5 Score=38.30 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=33.7
Q ss_pred HHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhh
Q psy16785 1190 NHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQL 1227 (1642)
Q Consensus 1190 ~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQL 1227 (1642)
.-||.|+..||+=|...+.-|+..|-++.|||.|=+-|
T Consensus 11 ~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L 48 (72)
T COG2900 11 IELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999885443
No 125
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.61 E-value=1.1e+02 Score=36.50 Aligned_cols=94 Identities=22% Similarity=0.333 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 927 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLq 927 (1642)
-+.+.++|.....++.++. .|+..|.+.+..| +-.|-|||-|...||..- |.++ +.+++|+.
T Consensus 218 ~~el~eik~~~~~L~~~~e----~Lk~~~~~e~~~~--~~~LqEEr~R~erLEeql--------Nd~~----elHq~Ei~ 279 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIE----KLKEQYQREYQFI--LEALQEERYRYERLEEQL--------NDLT----ELHQNEIY 279 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHH--------HHHH----HHHHHHHH
Confidence 3455666666666666654 4555555554444 457889999988877654 3333 33333333
Q ss_pred HHHHHhHhHHHHHHHHHHhhhhhH-HHHHHHHHHhhhcHH
Q psy16785 928 AQLEKYKENKKQILEMEKNIQLKD-DEINNLNENLTSSLA 966 (1642)
Q Consensus 928 ae~eK~KnlEe~i~~Le~dve~~~-dEi~~l~e~l~~tka 966 (1642)
+|+..++.++++++=+. +-...+.+.+.+++.
T Consensus 280 -------~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qt 312 (395)
T PF10267_consen 280 -------NLKQELASMEEKMAYQSYERARDIWEVMESCQT 312 (395)
T ss_pred -------HHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666666666666443 223344444444443
No 126
>KOG0161|consensus
Probab=65.54 E-value=5.8e+02 Score=36.28 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=97.1
Q ss_pred hhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE-LYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~-LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
+++++..|+.+|...|.+.. ++..-+.+...=+..|-. |--|+.-.++++ .+.....|+...+++.+.+....
T Consensus 843 ~~~e~~~l~~~l~~~e~~~~----ele~~~~~~~~e~~~l~~~l~~e~~~~~~ae--e~~~~~~~~k~~le~~l~~~~~~ 916 (1930)
T KOG0161|consen 843 KEEEIQKLKEELQKSESKRK----ELEEKLVKLLEEKNDLQEQLQAEKENLAEAE--ELLERLRAEKQELEKELKELKER 916 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666543 333334444443444433 334444444433 33467788899999999999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHH-------HHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEIN-------NLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIK 998 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~-------~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~ 998 (1642)
+..+.+++..++....+++.+++.+.+.+. +++.+...+....+.|..+|...+.-++.+. |..+
T Consensus 917 ~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~--------kekk 988 (1930)
T KOG0161|consen 917 LEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS--------KEKK 988 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 999999999998888888888887776666 5555566666666777777777666655543 4455
Q ss_pred HHHH-hHHHHHHH
Q psy16785 999 LIQD-NYLLIIDL 1010 (1642)
Q Consensus 999 lLEE-Nr~LL~dM 1010 (1642)
+|++ +++|..++
T Consensus 989 ~lEe~~~~l~~~l 1001 (1930)
T KOG0161|consen 989 ELEERIRELQDDL 1001 (1930)
T ss_pred HHHHHHHHHHHHH
Confidence 5554 45566665
No 127
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.53 E-value=18 Score=33.24 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
++++|..||..+.-+.+-|+.|+..+..-+.+...|+.++..+..-+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999888888888776655544
No 128
>KOG0250|consensus
Probab=65.12 E-value=4.7e+02 Score=35.13 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=63.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHH
Q psy16785 874 IEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDE 953 (1642)
Q Consensus 874 ~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dE 953 (1642)
.+|+|||.|+..+=...++|..- ....|++...|+.=+...+.+++..++.-..-..-..++++.+-++++.+.-+
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~----l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDT----LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 36889999888888887776532 23345666777766655666666666555555555666666666666666665
Q ss_pred HHHHHHHhhhcHHHHHHhHHHHhHHHHH
Q psy16785 954 INNLNENLTSSLAENHILNSQMTLVNNL 981 (1642)
Q Consensus 954 i~~l~e~l~~tkaE~r~L~~QM~lVN~L 981 (1642)
...+++++..+.-..+.++..+-..+..
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~ 380 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQ 380 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444443333
No 129
>KOG1962|consensus
Probab=64.96 E-value=59 Score=36.27 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 95 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 147 (1642)
Q Consensus 95 ndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~ 147 (1642)
+|-..++++-++++++...-+.+..++++..|.|..+.+++|+..+-++.+..
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34445555666677777777788888888888888888888888877665543
No 130
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=64.90 E-value=47 Score=34.45 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHH
Q psy16785 875 EYEKQMTNYKKLREL 889 (1642)
Q Consensus 875 EYERQL~NIR~LR~L 889 (1642)
||-+.|.|||+||.+
T Consensus 3 ~~lk~l~n~R~lra~ 17 (134)
T PRK10328 3 VMLQSLNNIRTLRAM 17 (134)
T ss_pred HHHHHHhhHHHHHHH
Confidence 456889999999654
No 131
>KOG0962|consensus
Probab=64.69 E-value=1.3e+02 Score=40.62 Aligned_cols=66 Identities=27% Similarity=0.270 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhcCch---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESPE---------EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAK 101 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~~---------DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaK 101 (1642)
|++..=++||...+++.. +++.|=++-..-.+.+|+.||..+-.---.-...-++...++.+.+.+
T Consensus 796 d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~ 870 (1294)
T KOG0962|consen 796 DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEK 870 (1294)
T ss_pred HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665543 667776776777788888887765432222222222555555544443
No 132
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.56 E-value=3.4e+02 Score=33.25 Aligned_cols=196 Identities=18% Similarity=0.200 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES--PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er--s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
.+-.+|+..+..+-.++.=- --+.-+++++||..|..--.-..++..-...-|.. +...+.+....|
T Consensus 320 ~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~-----------i~~~l~~~~~~l 388 (560)
T PF06160_consen 320 EQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSE-----------IQEELEEIEEQL 388 (560)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHH-----------HHHHHHHHHHHH
Confidence 44555555555555444322 22344566677666655444443333333333333 557777777777
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh---------HHHHhHHHHHHHHh---hcCCCCChH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL---------NSQMTLVNNLFSNM---LINPMINLD 994 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L---------~~QM~lVN~LFSqm---LLG~~iDLD 994 (1642)
..=.+..+.+.+.+..|.++-..+++.+.+++..+..++--.... ...+..+..-+.++ |--..+|+|
T Consensus 389 ~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~ 468 (560)
T PF06160_consen 389 EEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMD 468 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHH
Confidence 777777788899999999999999999999999888877554322 22344444333332 222889999
Q ss_pred HHHHHHHHhHHHHHHHhhccccccchhhhhhhhh----------h--cchhhhhhhhhHHHhhhhc-ccCCchhhhHHHh
Q psy16785 995 MLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEK----------K--IDQETLAIQNDKQLKQLEN-YETPMSSAMVEAV 1061 (1642)
Q Consensus 995 rL~~lLEENr~LL~dMt~~~einet~s~l~d~A~----------k--E~s~tlaa~LPKlL~~~e~-~~~~~~~dLVeqV 1061 (1642)
.+.+.|.+=-+-+..+.. .++.|++-|. + -.......+|-++.....+ |+-.-+++.+..+
T Consensus 469 ~v~~~l~~a~~~v~~L~~------~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~a 542 (560)
T PF06160_consen 469 EVNKQLEEAEDDVETLEE------KTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATA 542 (560)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 999988765555544422 2333333332 1 2234466777777777788 8888888776653
No 133
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.20 E-value=68 Score=39.74 Aligned_cols=93 Identities=24% Similarity=0.354 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHH
Q psy16785 104 EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLI 183 (1642)
Q Consensus 104 e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mL 183 (1642)
+.+.+++.=++.-..+..++.+++.++..+..++.++.+++.....+...+.+++.+--+++- ||-+..-+|.+|..++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~-lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVE-LLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 444455555556667888888888888888888899999999999999999999987666654 4666667789999999
Q ss_pred HHhHHHHHHHHhhc
Q psy16785 184 QDNYLLIIDLINNH 197 (1642)
Q Consensus 184 EENr~LL~dMt~nE 197 (1642)
+.+..=+..|++.=
T Consensus 404 ~~s~~rl~~L~~qW 417 (594)
T PF05667_consen 404 EASEQRLVELAQQW 417 (594)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888887654
No 134
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=64.18 E-value=1.4e+02 Score=30.28 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHhHHH
Q psy16785 53 EEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 53 ~DLR~EYEKQL~NIR~ 68 (1642)
.+++.+|+..|.+.|.
T Consensus 58 ~~~~~e~e~~l~~Ar~ 73 (141)
T PRK08476 58 SEIEHEIETILKNARE 73 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4889999999988764
No 135
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=63.82 E-value=1.9e+02 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHHHHHH
Q psy16785 37 LKTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 37 LK~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~LRqLY 73 (1642)
|..|=+.|.+++.+.. ..+..+|+++|.+.|.=.+-+
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~i 90 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERI 90 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666665333 378889999999988644433
No 136
>KOG0018|consensus
Probab=63.73 E-value=85 Score=41.47 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHH--------HHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHH
Q psy16785 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE--------LYEQRAAA-AELEHKTMIEKELAKNALLEAKLKE 921 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~--------LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e 921 (1642)
...++..++.+++.+.. -+..+.+|++.++++++.|. .-++-.|+ .++..++ +-+-+.+.+....
T Consensus 319 ~~~~~~~ie~~ek~l~a-v~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~-----~~el~~ln~~~r~ 392 (1141)
T KOG0018|consen 319 YRALKETIERLEKELKA-VEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA-----LEELEVLNRNMRS 392 (1141)
T ss_pred HHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHH
Confidence 34444455555544433 34456778888888877554 11111122 1111111 2233346677788
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhH
Q psy16785 922 IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILN 972 (1642)
Q Consensus 922 ~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~ 972 (1642)
.+..|..+.++..++++++..+...|...+..+.+|...+.+.++....+.
T Consensus 393 ~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~ 443 (1141)
T KOG0018|consen 393 DQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELK 443 (1141)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999988888888777777666666555444433
No 137
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.46 E-value=70 Score=33.55 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
+|+.+|..|+.+++..+.+.+.+.-....+++++..|+.+|.+|
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444444444455555555554444
No 138
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.33 E-value=5e+02 Score=34.94 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy16785 869 PEEIKIEYEKQMTNYKKLRELYEQRA-AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNI 947 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~LYEER~-Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dv 947 (1642)
.+-++.+++++=.-+..|+...+++. +.++..-+. ...+..+....-..++.+++.|..|-+++...-.++
T Consensus 210 ~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~--------~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~ 281 (1109)
T PRK10929 210 SELAKKRSQQLDAYLQALRNQLNSQRQREAERALES--------TELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRM 281 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556667776665533 223332211 111111111122237777778888888888888888
Q ss_pred hhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH--HHHHHHhhcC------CCCChHHHHHHHHHhH
Q psy16785 948 QLKDDEINNLNENLTSSLAENHILNSQMTLV--NNLFSNMLIN------PMINLDMLIKLIQDNY 1004 (1642)
Q Consensus 948 e~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV--N~LFSqmLLG------~~iDLDrL~~lLEENr 1004 (1642)
.....+....++.+.....--+.+++|+.++ +.+||..|.. .+..+..|..-+.+-|
T Consensus 282 n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlR 346 (1109)
T PRK10929 282 DLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLR 346 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHH
Confidence 8877777777777777777777788887765 5677777776 3444455544444444
No 139
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.27 E-value=29 Score=32.40 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
..++++|..||..+.-+.+-|+.|++.+..-+.+...|+.+|..+..=+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999999999998877654443
No 140
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=63.20 E-value=1.6e+02 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=15.6
Q ss_pred cceeeeehhhHHHHHHHHHHHhhc
Q psy16785 27 TSMVVFKVSDLKTRLKDVEKKLLE 50 (1642)
Q Consensus 27 KqMl~~keaQLK~KL~EIE~SlaE 50 (1642)
+.+|+=++.+||++..+|=..+.+
T Consensus 64 rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 64 RDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777666655
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.11 E-value=2.4e+02 Score=32.92 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcc
Q psy16785 842 TTRSVILPLVSDLKTRLKDVEKKLLE 867 (1642)
Q Consensus 842 ~trsvrE~Qv~qLK~kL~qIE~sL~E 867 (1642)
.++..-+.|+.+++.+|.+.|..|.+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566688999999999998888764
No 142
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.97 E-value=24 Score=32.36 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
+++||..||..+.-..+.|+.||..+...+.+-..|..++..+..-+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999888776655544
No 143
>KOG0804|consensus
Probab=62.94 E-value=1.5e+02 Score=36.53 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHH
Q psy16785 99 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 161 (1642)
Q Consensus 99 EaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~V 161 (1642)
-.|++..+.++..+.|-+|.|.+..+-....+ ....+.+++.+.+..+....|++|+.=+
T Consensus 388 q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl---~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 388 QTKLKKCQKELKEEREENKKLIKNQDVWRGKL---KELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36777778888888777777665544443333 3333445555666666667777776543
No 144
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=62.88 E-value=1.8e+02 Score=29.65 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=21.5
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLR 70 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LR 70 (1642)
|.......|.+.+..-.+ ...++.+|+++|.+.|.=.
T Consensus 40 R~~~I~~~l~~A~~~~~e-a~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14471 40 REDSIKNALASAEEARKE-MQNLQADNERLLKEARAER 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334444444444442222 2378999999999877643
No 145
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.87 E-value=1.4e+02 Score=34.07 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 78 AAAELEHKTMIE---KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 78 RaAa~e~e~LiR---le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
+.-+++-++|+| +--+|.+++|-| +.|+..+..+.+|-+.+.+|+.+++..++.|+.++-+.+......+.|
T Consensus 115 AlvRAGLktL~~v~~~~d~ke~~ee~k-----ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 115 ALVRAGLKTLQRVPEYMDLKEDYEELK-----EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555554 345666666443 345555666667777777777777777777777776666655555555
Q ss_pred HHHHHHHHHHHHHhhhC
Q psy16785 155 NSQMTLVNNLFSNMLIN 171 (1642)
Q Consensus 155 ~aQM~~VN~LFSqlLlg 171 (1642)
-.++.-.-.=|+-+--|
T Consensus 190 ~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 190 PGEVYDLKKRWDELEPG 206 (290)
T ss_pred hhHHHHHHHHHHHhccc
Confidence 55555555555554444
No 146
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=62.84 E-value=1.2e+02 Score=34.95 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQL 930 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~ 930 (1642)
+.+||..|+++|.+|. +-|+ ...||++|+.. |+ =+++..|+.|.
T Consensus 79 ~r~lk~~l~evEekyr-----------kAMv---~naQLDNek~~------------------l~-yqvd~Lkd~le--- 122 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYR-----------KAMV---SNAQLDNEKSA------------------LM-YQVDLLKDKLE--- 122 (302)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHH---HHhhhchHHHH------------------HH-HHHHHHHHHHH---
Confidence 4578999999998853 4443 23456666543 33 44566666666
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
++++.+..+.+++..+.-+++.++..+...+.|...|+.|+.
T Consensus 123 ----e~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 123 ----ELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888888888888888874
No 147
>KOG0995|consensus
Probab=62.60 E-value=4.1e+02 Score=33.59 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHH
Q psy16785 922 IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQ 1001 (1642)
Q Consensus 922 ~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLE 1001 (1642)
.+++...=+.=.++|+...+.+++.+..+..||+..+++|-..+.+...|++++..= ++...-+.+|=.
T Consensus 271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-----------~iS~~dve~mn~ 339 (581)
T KOG0995|consen 271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-----------GISGEDVERMNL 339 (581)
T ss_pred HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHH
Confidence 333333333334567788888999999999999999999999999999999887652 444445555555
Q ss_pred HhHHHHHHH
Q psy16785 1002 DNYLLIIDL 1010 (1642)
Q Consensus 1002 ENr~LL~dM 1010 (1642)
|+-.|-.++
T Consensus 340 Er~~l~r~l 348 (581)
T KOG0995|consen 340 ERNKLKREL 348 (581)
T ss_pred HHHHHHHHH
Confidence 555554443
No 148
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=62.57 E-value=2.1e+02 Score=31.79 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=22.6
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLR 70 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LR 70 (1642)
|.......|.+.|+...+ -..++.+|++++.+.++=+
T Consensus 37 R~~~I~~~l~~Ae~~~~e-A~~~~~e~e~~l~~a~~ea 73 (250)
T PRK14474 37 RQQRIANRWQDAEQRQQE-AGQEAERYRQKQQSLEQQR 73 (250)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444445555555544433 2378889999988877543
No 149
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=62.37 E-value=1.7e+02 Score=29.93 Aligned_cols=31 Identities=32% Similarity=0.712 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhccC--chHHHHHHHHHHHhHH
Q psy16785 854 LKTRLKDVEKKLLES--PEEIKIEYEKQMTNYK 884 (1642)
Q Consensus 854 LK~kL~qIE~sL~Er--s~dLr~EYERQL~NIR 884 (1642)
||.++++||--|... ++++|+|.||.|.=+.
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~ 34 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALK 34 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 799999999888666 9999999999887543
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.22 E-value=76 Score=38.90 Aligned_cols=106 Identities=27% Similarity=0.360 Sum_probs=73.1
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhH------
Q psy16785 1171 LILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNI------ 1244 (1642)
Q Consensus 1171 LILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrL------ 1244 (1642)
.||||+.+.|=+..|-..=.|-...|.+..+-=.+..+||.|.=.-...||-.|.- ++|||-+-
T Consensus 381 viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~----------eiQqKnksvsqclE 450 (527)
T PF15066_consen 381 VILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT----------EIQQKNKSVSQCLE 450 (527)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH----------HHHHhhhHHHHHHH
Confidence 57899998888888888778888888777777778888888877777777766642 33333322
Q ss_pred --------------HHHHHHHHHHHH-HHHHHHHhhhccCHHHHHHHHHHHHhhhhc
Q psy16785 1245 --------------INDLKIDLEYVR-EKWDLVKEKNEQNELDYKVLRKEFALRRLQ 1286 (1642)
Q Consensus 1245 --------------LsELKeELEYCR-eKW~~AR~KN~eSE~qwk~LR~EFA~RK~~ 1286 (1642)
|.-||.|||-+- ---+....--..-+-++-+|..||-.|+..
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445777777554 333433333333455788999999998775
No 151
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=61.60 E-value=1.4e+02 Score=32.06 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=65.9
Q ss_pred ccccccccCCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccC-chH---HHHHHHHHHHhHHHHHHHHHHHHHH-
Q psy16785 822 VCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLES-PEE---IKIEYEKQMTNYKKLRELYEQRAAA- 896 (1642)
Q Consensus 822 ~~~~~~~~m~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Er-s~d---Lr~EYERQL~NIR~LR~LYEER~Rv- 896 (1642)
.|+....+.-.+|++++.| .++.+.-.++..+....+.. .-. .=.+| +-.|..+|.++..|.++
T Consensus 46 ~~~~~L~~~E~~~~l~~~l--------~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey---~r~~~Svk~~~~~R~~~~ 114 (216)
T cd07627 46 ETLEALSSLELSKSLSDLL--------AALAEVQKRIKESLERQALQDVLTLGVTLDEY---IRSIGSVRAAFAQRQKLW 114 (216)
T ss_pred HHHHHHHHhhcchHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3333333333345555555 46677777777777766555 222 33455 44677888999999977
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 897 AELEHKTMIEKELAKNALLEAKLKEIQEEIQ----AQLEKYKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 897 aele~e~~i~ke~akn~Llqr~L~e~K~eLq----ae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
...+.- ++.++|-. .....|. ...+|...++.+|..++..++.+..+.+.+.+.+
T Consensus 115 ~~~~~~---~~~L~k~~-------~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~ 173 (216)
T cd07627 115 QYWQSA---ESELSKKK-------AQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELI 173 (216)
T ss_pred HHHHHH---HHHHHHHH-------HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 22222211 1111111 1245666777777777777777777666655443
No 152
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.52 E-value=2.4e+02 Score=37.61 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHHHh
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLIN 195 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dMt~ 195 (1642)
++.+++.++..++.+++.|+..+-+-++...+.-+.-+ .+ .+. .+-. +.+.++.|+.|-..+.+
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~---------~~--~~~-~~~~-i~~~~~~N~~Ls~~L~~ 276 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA---------EQ--SGD-LPKS-IVAQFKINRELSQALNQ 276 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------Hh--hcc-CChH-HHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655554444333222110 00 111 1111 66677778877665543
No 153
>PRK02793 phi X174 lysis protein; Provisional
Probab=61.30 E-value=27 Score=32.66 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
..++.||..||..+.-..+.|+.||+.++..+.+-..|..+|..+..=+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999999999998877554433
No 154
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=61.05 E-value=1.8e+02 Score=29.77 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhh--cCchHHHHHHHHHHHhHH
Q psy16785 36 DLKTRLKDVEKKLL--ESPEEIKIEYEKQMTNYK 67 (1642)
Q Consensus 36 QLK~KL~EIE~Sla--E~~~DLR~EYEKQL~NIR 67 (1642)
.||+++.+||--|+ .+++++|+|.||.|.=+.
T Consensus 1 klK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~ 34 (114)
T PF10153_consen 1 KLKKRIRDIERLLKRKDLPADVRVEKERELEALK 34 (114)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 37999999999996 899999999999987654
No 155
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.04 E-value=2.7e+02 Score=32.64 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy16785 874 IEYEKQMTNYKKLRELYEQR 893 (1642)
Q Consensus 874 ~EYERQL~NIR~LR~LYEER 893 (1642)
..++.++.+++.+..+|++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 182 SKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 35566666666666666553
No 156
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.01 E-value=2.3e+02 Score=30.45 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q psy16785 54 EIKIEYEKQMTNYKKLRELYEQ 75 (1642)
Q Consensus 54 DLR~EYEKQL~NIR~LRqLYEE 75 (1642)
.+|.+|..=+..| ..||+.
T Consensus 88 rvrde~~~~l~~y---~~l~~s 106 (189)
T PF10211_consen 88 RVRDEYRMTLDAY---QTLYES 106 (189)
T ss_pred HHHHHHHHHHHHH---HHHHHH
Confidence 7788886655555 345665
No 157
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=60.24 E-value=85 Score=32.93 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC---CCCCHHHHHHHHHHh
Q psy16785 110 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLDMLIKLIQDN 186 (1642)
Q Consensus 110 qaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg---~~~DlDrLi~mLEEN 186 (1642)
..=.-++-+|+.+|..|+.+++........+-...-..++|...|++++.+|..=..++=.. =.=.-+.|.++|++-
T Consensus 13 K~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 13 KESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666666666666666666666666666554433332210 001224455555555
Q ss_pred HHHHHHH
Q psy16785 187 YLLIIDL 193 (1642)
Q Consensus 187 r~LL~dM 193 (1642)
.+-+..+
T Consensus 93 q~kv~eL 99 (140)
T PF10473_consen 93 QEKVSEL 99 (140)
T ss_pred HHHHHHH
Confidence 5444444
No 158
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.19 E-value=3e+02 Score=31.59 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH-HHHHHHHHhhhC
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT-LVNNLFSNMLIN 171 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~-~VN~LFSqlLlg 171 (1642)
+-+--.++.|.+++..-.++|+.+.+++...++|-..|..+.. +=+..|--+|+.
T Consensus 182 ~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~ 237 (258)
T PF15397_consen 182 LQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLR 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcC
Confidence 4445678888999999999999999999999999999988876 456789999885
No 159
>PRK11519 tyrosine kinase; Provisional
Probab=59.86 E-value=1e+02 Score=38.22 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=21.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcc
Q psy16785 841 ATTRSVILPLVSDLKTRLKDVEKKLLE 867 (1642)
Q Consensus 841 ~~trsvrE~Qv~qLK~kL~qIE~sL~E 867 (1642)
..+...-+.|+.+++.+|.+.|..|.+
T Consensus 266 ~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 266 SKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999998887754
No 160
>PRK12704 phosphodiesterase; Provisional
Probab=59.67 E-value=2.3e+02 Score=34.64 Aligned_cols=51 Identities=14% Similarity=0.281 Sum_probs=26.0
Q ss_pred CcchhHHHHHHhhhchhhHHHhhhhhhHHHHhhccchhHHHHHHHhhccccccccccc
Q psy16785 199 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVES 256 (1642)
Q Consensus 199 ~SdtasLL~dLv~qi~eeS~avE~~k~~eeIi~NLPKVWkvLmELLsH~~~~~~~~es 256 (1642)
-.+.+.++-++..+..+ ++++.|..|+.. -|-+.-.+..+-..++.|+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~-----~a~~~a~~i~~~--a~qr~a~~~~~e~~~~~v~lp~ 218 (520)
T PRK12704 168 RHEAAVLIKEIEEEAKE-----EADKKAKEILAQ--AIQRCAADHVAETTVSVVNLPN 218 (520)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH--HHHhhcchhhhhhceeeeecCC
Confidence 34445444444333222 466677777643 3445555555555555555443
No 161
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=59.66 E-value=3.2e+02 Score=31.39 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh-HHHHHHHHhhcC-----CCCCh
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT-LVNNLFSNMLIN-----PMINL 993 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~-lVN~LFSqmLLG-----~~iDL 993 (1642)
-+--.+..+.+.+..-..+|+.+.+++...+||...|+.+.. +=+..|-.+|+- ++||+
T Consensus 183 ~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDmdV 247 (258)
T PF15397_consen 183 QRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDMDV 247 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCchh
Confidence 344667788899999999999999999999999999998876 556789999988 77764
No 162
>KOG0933|consensus
Probab=59.47 E-value=3.8e+02 Score=35.96 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 906 EKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 906 ~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
++|+-.+.|- ++|...|..+++.-...+.-+.....|+-+++.+..|+...+.++......+..|.++++..-.=.
T Consensus 784 ~re~rlkdl~-keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv--- 859 (1174)
T KOG0933|consen 784 NRERRLKDLE-KEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV--- 859 (1174)
T ss_pred hhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3344444443 555555555554444444444444455555555555555555555555555555555554332211
Q ss_pred hcCCCCChHHHHHHHHHhHHHHHH
Q psy16785 986 LINPMINLDMLIKLIQDNYLLIID 1009 (1642)
Q Consensus 986 LLG~~iDLDrL~~lLEENr~LL~d 1009 (1642)
-+..-|.+++.+-|.+=+.-+.+
T Consensus 860 -~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 860 -DKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred -HhHHhHHHHHHHHHHHHHHHHHh
Confidence 12333445555555444444333
No 163
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=59.44 E-value=86 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=24.2
Q ss_pred eeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHH
Q psy16785 29 MVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLR 70 (1642)
Q Consensus 29 Ml~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LR 70 (1642)
||.=|.......|.+.|....+. ..+..+|+.+|.+-|.=.
T Consensus 33 ~l~~R~~~I~~~l~~Ae~~~~ea-~~~~~~~e~~L~~a~~ea 73 (140)
T PRK07353 33 VVEEREDYIRTNRAEAKERLAEA-EKLEAQYEQQLASARKQA 73 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33334444455555555443332 367889999999887543
No 164
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=59.43 E-value=2.1e+02 Score=29.14 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHH
Q psy16785 38 KTRLKDVEKKLLESP------EEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 38 K~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~ 68 (1642)
..|=..|.+.+.+.+ ..++.+|+.+|.+.+.
T Consensus 32 ~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ 68 (159)
T PRK09173 32 DARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEK 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555444322 2788899999888774
No 165
>KOG0982|consensus
Probab=59.24 E-value=2.9e+02 Score=34.04 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=80.7
Q ss_pred CCCCCcchhhhhhh----------hhhhhhhHHHHHHHHHHHHH---HhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 830 MHSTPPESNILATT----------RSVILPLVSDLKTRLKDVEK---KLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 830 m~~t~~~~~il~~t----------rsvrE~Qv~qLK~kL~qIE~---sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
||+..--+|-+++. |.=.+++|.-|+.|..++|+ ..++|+.-+++||--=..-+.-|-++|.+-
T Consensus 193 ~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~req--- 269 (502)
T KOG0982|consen 193 FNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQ--- 269 (502)
T ss_pred cccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 66666555555544 45567899999999999998 677889999999965444566666666432
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 897 AELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 897 aele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
++..+.+|..|-- ..|++-.+ -+-.+++++ .+++-+++.|+.++..++..+.-|+..+...-.|..-+..++.
T Consensus 270 -ElraeE~l~Ee~r----rhrEil~k-~eReasle~-Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 270 -ELRAEESLSEEER----RHREILIK-KEREASLEK-ENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred -hhhHHHHHHHHHH----HHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2222221111100 11222111 122223322 3566677777888888887777777777665555544444443
No 166
>KOG1853|consensus
Probab=59.07 E-value=2.7e+02 Score=32.46 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=16.7
Q ss_pred HHHhccCchHHHHHHHHHHHhHHH-HHHHHH
Q psy16785 862 EKKLLESPEEIKIEYEKQMTNYKK-LRELYE 891 (1642)
Q Consensus 862 E~sL~Ers~dLr~EYERQL~NIR~-LR~LYE 891 (1642)
-+-|++-|.++..|.|-||+-|.+ +|.|--
T Consensus 36 l~EFQegSrE~EaelesqL~q~etrnrdl~t 66 (333)
T KOG1853|consen 36 LNEFQEGSREIEAELESQLDQLETRNRDLET 66 (333)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666665543 444433
No 167
>PRK04325 hypothetical protein; Provisional
Probab=58.65 E-value=30 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 983 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFS 983 (1642)
.++++|..||..+.-+.+-|+.|+..+..-+.+...|+.+|.++..=+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999888888888877654333
No 168
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=58.59 E-value=4.6e+02 Score=32.81 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=22.8
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhc
Q psy16785 1171 LILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTEL 1210 (1642)
Q Consensus 1171 LILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~EL 1210 (1642)
+.-+...+..+++.++.--..++.++.+.+.++.....++
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 423 (1179)
T TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555565555555566666666666666655543
No 169
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.47 E-value=1.9e+02 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.383 Sum_probs=31.0
Q ss_pred hH-HHHHHHHHHHhhcCc-hHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DL-KTRLKDVEKKLLESP-EEIKIEYEKQ-MTNYKKLRELYEQRAAAAELEHKTMIE 89 (1642)
Q Consensus 36 QL-K~KL~EIE~SlaE~~-~DLR~EYEKQ-L~NIR~LRqLYEERaRaAa~e~e~LiR 89 (1642)
+| +.+|.+|-+.+..++ +.++..+=|+ |.=|...++.|.. .+.++++.+..-|
T Consensus 145 ~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r 200 (269)
T PF05278_consen 145 ELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDR 200 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44 466666666666555 5667776664 4456666666653 3344555555555
No 170
>PRK02119 hypothetical protein; Provisional
Probab=58.44 E-value=33 Score=32.22 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 982 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LF 982 (1642)
..++++|..||..+.-+.+-|+.|+..+...+.+...|+.++..+..=+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999888888887765433
No 171
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.34 E-value=53 Score=37.51 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=16.3
Q ss_pred hhhhHHHHhhhhHHHHHHHHhhhhhc
Q psy16785 1175 KNHLTNQLAKLKTLNNHLEIRLNHSE 1200 (1642)
Q Consensus 1175 KKsL~KEtNRLKtLN~HLE~RL~eQE 1200 (1642)
+..|.++.+.|..|..-||..++..+
T Consensus 164 q~~l~~~~e~l~al~~e~e~~~~~L~ 189 (265)
T COG3883 164 QAALEDKLETLVALQNELETQLNSLN 189 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777776665543
No 172
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=58.32 E-value=2e+02 Score=28.60 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=32.5
Q ss_pred eeehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHH
Q psy16785 2 VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 2 ~~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~ 68 (1642)
|.|.||.+|+.+=..+.++. ||.=|.......|.+.+....+. ..++.+|+++|.+.+.
T Consensus 3 i~Flil~~il~~~~~~pi~~-------~l~~R~~~I~~~l~~A~~~~~ea-~~~~~e~~~~l~~A~~ 61 (147)
T TIGR01144 3 ISFILLVWFCMKYVWPPLAK-------AIETRQKKIADGLASAERAKKEA-ALAQKKAQVILKEAKD 61 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44555555544433333333 23334444455555555544332 3788999999988874
No 173
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.19 E-value=3.5e+02 Score=31.30 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q psy16785 880 MTNYKKLRELYEQRAAAAEL 899 (1642)
Q Consensus 880 L~NIR~LR~LYEER~Rvael 899 (1642)
=.||+....+|..|+|+.-+
T Consensus 93 ~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 93 KENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999998543
No 174
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=58.08 E-value=2.1e+02 Score=34.93 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=32.8
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
.--+.++-..|.+.|.++-++..+++++..+..++...|+.-
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s 180 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQAS 180 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677778888888888888888888888888888843
No 175
>PRK00295 hypothetical protein; Provisional
Probab=57.84 E-value=31 Score=31.96 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHH
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 980 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~ 980 (1642)
++++|..||..+.-+.+-|+.|+..+..-+.+...|+.+|..+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999998888888888888876644
No 176
>KOG4593|consensus
Probab=57.72 E-value=4.7e+02 Score=33.82 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---H
Q psy16785 870 EEIKIEYEKQMTNYKKLRELYEQR-AAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEME---K 945 (1642)
Q Consensus 870 ~dLr~EYERQL~NIR~LR~LYEER-~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le---~ 945 (1642)
+++..||.+|.+-+...-+.--++ ++..++....+++++.-++-...-+|..+. +++..+|+.++ .
T Consensus 189 ~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~----------~~~~dqlqel~~l~~ 258 (716)
T KOG4593|consen 189 QNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAIN----------KNMKDQLQELEELER 258 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH----------HHHHHHHHHHHHHHH
Confidence 445555555555554443333333 233444444555555555444433333332 33334444333 2
Q ss_pred hhhhhHHHHHHHH---HHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHHhhc
Q psy16785 946 NIQLKDDEINNLN---ENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINN 1013 (1642)
Q Consensus 946 dve~~~dEi~~l~---e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dMt~~ 1013 (1642)
......+|+..++ .--+..++|...|++.++=.+.|.|+.+. +=.||.+|++.++.-
T Consensus 259 a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~-----------LELeN~~l~tkL~rw 318 (716)
T KOG4593|consen 259 ALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLG-----------LELENEDLLTKLQRW 318 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHHHHHHH
Confidence 3333445555333 34456789999999999999999988753 345899999998654
No 177
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.67 E-value=2.7e+02 Score=36.22 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=79.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHH
Q psy16785 843 TRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIEKELAKNALLEAKLKE 921 (1642)
Q Consensus 843 trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e 921 (1642)
.+|+---.-+||+.-|+.+|. |.-+-++|....|-|-+--+.|+.++.+...- -+-+. ...-+..-
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~-lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq------------~~d~e~~r 498 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQEL-LQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQ------------QFDIETTR 498 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHH
Confidence 344444445666666666653 45557778888887777777777777665432 22111 22334555
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 922 IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 922 ~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
+|.++..-+-+.|.+.-.++..+++...+...+.+-.+++.-...=.|.||+-|+
T Consensus 499 ik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 499 IKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777888888887777777777777777777788887775
No 178
>KOG0239|consensus
Probab=57.42 E-value=2.5e+02 Score=35.59 Aligned_cols=85 Identities=13% Similarity=0.243 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHH
Q psy16785 100 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDML 179 (1642)
Q Consensus 100 aKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrL 179 (1642)
.+++.++.......++.+.+...+..|.+....+.+....+.+++..+..+.+.+.++++..+.-+ .++.
T Consensus 227 ~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l----------~~~~ 296 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL----------VEKK 296 (670)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 445555566666666677777777788888888888888888888777777777766666555432 1222
Q ss_pred HHHHHHhHHHHHHHHh
Q psy16785 180 IKLIQDNYLLIIDLIN 195 (1642)
Q Consensus 180 i~mLEENr~LL~dMt~ 195 (1642)
.--++|+.|-+++.+
T Consensus 297 -~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 297 -KEKEERRKLHNEILE 311 (670)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 233677777766543
No 179
>KOG1899|consensus
Probab=57.07 E-value=2.6e+02 Score=35.81 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchH
Q psy16785 830 MHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEE 871 (1642)
Q Consensus 830 m~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~d 871 (1642)
|+|---.++-|..-.||--+||..-+.|++++|--+.+..+.
T Consensus 113 LaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~k 154 (861)
T KOG1899|consen 113 LARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNK 154 (861)
T ss_pred HHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 444445566677777999999999999999999988887333
No 180
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.53 E-value=1.8e+02 Score=32.42 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy16785 851 VSDLKTRLKDVEKKL 865 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL 865 (1642)
+.+||.|..++|...
T Consensus 3 i~~ir~K~~~lek~k 17 (230)
T PF10146_consen 3 IKEIRNKTLELEKLK 17 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677776666554
No 181
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.39 E-value=60 Score=33.82 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=16.6
Q ss_pred HhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 945 KNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 945 ~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
.+.+...+|+++++.+|.....|...|+.|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555543
No 182
>PF04484 DUF566: Family of unknown function (DUF566) ; InterPro: IPR007573 This is a family of related proteins that is plant specific.
Probab=56.19 E-value=2.9e+02 Score=31.95 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHH------HHHh-----------------hcCCCC
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNL------FSNM-----------------LINPMI 991 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~L------FSqm-----------------LLG~~i 991 (1642)
+.-..|.+|.+-|..++.|+..++.++.+. ..|+.||..+... .+.- .-|...
T Consensus 184 ~~w~~is~Lr~sV~~KRi~lq~~kq~~KL~----~IL~~Q~~~Le~W~~le~~h~~sl~~~~~aL~a~~lrlP~~~ga~~ 259 (311)
T PF04484_consen 184 NAWLRISELRDSVAMKRIELQRLKQELKLN----SILKSQMPYLEEWAALEREHSSSLSGATEALKASTLRLPVTGGAKA 259 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcee
Confidence 566667777777777777777777666653 4566666655432 1111 124788
Q ss_pred ChHHHHHHHHHhHHHHHHHh--------hccccccchhhhhhhhhhc
Q psy16785 992 NLDMLIKLIQDNYLLIIDLI--------NNHEINDTVSLLVDLEKKI 1030 (1642)
Q Consensus 992 DLDrL~~lLEENr~LL~dMt--------~~~einet~s~l~d~A~kE 1030 (1642)
|+.-|..-|--=.++...|. +.++++..+++|..++.+|
T Consensus 260 d~~~l~~al~sAvdvm~~i~ssi~~l~pk~e~~~~l~seLa~v~~~E 306 (311)
T PF04484_consen 260 DVQSLKEALSSAVDVMQAIESSICSLLPKVEETSSLVSELARVAAQE 306 (311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 88887777766666666553 3344444444444444443
No 183
>PRK04325 hypothetical protein; Provisional
Probab=56.03 E-value=37 Score=31.93 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 166 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFS 166 (1642)
.+++||..||..+.-..+.|+.||..+...+.+-..|..+|..+..=+.
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999877644333
No 184
>KOG4466|consensus
Probab=55.99 E-value=69 Score=37.10 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=45.8
Q ss_pred cceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 27 TSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMI 88 (1642)
Q Consensus 27 KqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~Li 88 (1642)
++...+|+.+.|.||.+++..|-++-+---.||-+++ +.|++=|-+|-++|++=++=++
T Consensus 30 ~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~---~~L~~~~kerl~~aely~e~~~ 88 (291)
T KOG4466|consen 30 KQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRV---KKLDESRKERLRVAELYREYCV 88 (291)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777789999999999888877778999886 5788888888888887665543
No 185
>PRK02224 chromosome segregation protein; Provisional
Probab=55.91 E-value=5.1e+02 Score=32.50 Aligned_cols=6 Identities=50% Similarity=0.579 Sum_probs=3.7
Q ss_pred cccccc
Q psy16785 1623 LVSHWN 1628 (1642)
Q Consensus 1623 ~~~~~~ 1628 (1642)
+|||+.
T Consensus 849 iish~~ 854 (880)
T PRK02224 849 VVSHDD 854 (880)
T ss_pred EEECCh
Confidence 566665
No 186
>PRK00846 hypothetical protein; Provisional
Probab=55.89 E-value=35 Score=32.90 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
..++.||..||..+.-..+.|+.||..++........|..||..+..=+-.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999988776544433
No 187
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.85 E-value=61 Score=33.80 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=16.4
Q ss_pred HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 932 KYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
+.+..++++++|+++++.+..+++.|+.|...
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555443
No 188
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.51 E-value=1.1e+02 Score=34.89 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
+.+.+.|..|+..++...+|-+++.+|+.+++..++.|..++-+.+......+.|--++.-+-.-|+-+
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344455555555555555666666666666666666666555555544444444444444333333333
No 189
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=55.15 E-value=87 Score=32.63 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHH
Q psy16785 875 EYEKQMTNYKKLREL 889 (1642)
Q Consensus 875 EYERQL~NIR~LR~L 889 (1642)
||-+.|.|||+||.+
T Consensus 3 ~~lk~l~niR~lra~ 17 (135)
T PRK10947 3 EALKILNNIRTLRAQ 17 (135)
T ss_pred HHHHHHHhHHHHHHH
Confidence 456889999999754
No 190
>PRK00846 hypothetical protein; Provisional
Probab=55.11 E-value=47 Score=32.06 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
..++.+|..||..+.-+.+-|+.|+..+...+.....|+.||.++..=+-.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999999999988776644443
No 191
>KOG2991|consensus
Probab=55.10 E-value=1.2e+02 Score=35.12 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 885 KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 964 (1642)
Q Consensus 885 ~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~t 964 (1642)
.-|-||+|-+.+-.+--+..|-+--++-|+-+..-++.|..- .+|-+++..|..||+.++..|-=|+.+|..+
T Consensus 218 KCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq-------~eL~dfm~eLdedVEgmqsTiliLQq~Lket 290 (330)
T KOG2991|consen 218 KCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQ-------EELYDFMEELDEDVEGMQSTILILQQKLKET 290 (330)
T ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhH-------HHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 346677777766444333322221122222222222222222 3788999999999999999999999999999
Q ss_pred HHHHHHhHHHHhHHH
Q psy16785 965 LAENHILNSQMTLVN 979 (1642)
Q Consensus 965 kaE~r~L~~QM~lVN 979 (1642)
..+...|......|-
T Consensus 291 r~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 291 RKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888777655543
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.97 E-value=1.6e+02 Score=33.77 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.6
Q ss_pred hhhhHHHHHHH
Q psy16785 1183 AKLKTLNNHLE 1193 (1642)
Q Consensus 1183 NRLKtLN~HLE 1193 (1642)
.=++++=.|++
T Consensus 247 ~~~~q~~~~~~ 257 (314)
T PF04111_consen 247 DCLQQLAEFVE 257 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 193
>KOG0996|consensus
Probab=54.82 E-value=3.1e+02 Score=37.05 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 912 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 912 n~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
|.++ +++++.|..|++..+-+++....+..+++++....+|+.+...++....-+-+.|+.+
T Consensus 517 ~~~~-~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 517 ETGL-KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444 6666666666666666666666666666666666666666666666666665554443
No 194
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=54.79 E-value=2.6e+02 Score=28.91 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHH
Q psy16785 38 KTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKL 69 (1642)
Q Consensus 38 K~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~L 69 (1642)
..|=..|.+.|.+-+ ..++.+|+++|.+.|.=
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~e 77 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQ 77 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554322 37889999999988753
No 195
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.68 E-value=74 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=44.8
Q ss_pred HHhhhHHHHHHHHHHhhhhh--HHHHHHHHHHhhhcHHHHHHhHHHHHHHHHH
Q psy16785 114 EKYKENKKQILEMEKNIQLK--DDEINNLNENLTSSLAENHILNSQMTLVNNL 164 (1642)
Q Consensus 114 eK~K~leeri~~LEkeVetk--~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~L 164 (1642)
++-.....|++.+|++++.+ .+++.+|+-.++...-+...+.+++..|+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456789999999999999 9999999999999999999999999887543
No 196
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=54.36 E-value=1.3e+02 Score=32.85 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 914 LLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 914 Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
.++++-.--..++++.++|.+-||.+-.+|-.--..+..-|..|+++|..-.-+++.++.-
T Consensus 103 ~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdk 163 (178)
T PF14073_consen 103 SLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDK 163 (178)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433445678999999999999999999888888999999999998777777666643
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.33 E-value=2.5e+02 Score=28.41 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 916 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 916 qr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
+.+++..+.++.....+...++..+..++..+....+|+..+...+.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555544444433
No 198
>KOG0979|consensus
Probab=54.10 E-value=4.2e+02 Score=35.45 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=38.9
Q ss_pred CCCCCcchhhhhhhhhhhhhh-------HHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHHH
Q psy16785 830 MHSTPPESNILATTRSVILPL-------VSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKL 886 (1642)
Q Consensus 830 m~~t~~~~~il~~trsvrE~Q-------v~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~L 886 (1642)
..+-+|..-...|-++|-.++ +-+|....++||..+... .+-|+++-+++..-...+
T Consensus 155 Fa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 155 FARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777888887773 456778888999988877 566666666655444333
No 199
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.03 E-value=3.7e+02 Score=34.27 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=28.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 844 RSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 844 rsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
..+||.=+..+ ...-..+..|-+-|+.++++|+.=|. +|.++|..+
T Consensus 546 ~vlreeYi~~~----~~ar~ei~~rv~~Lk~~~e~Ql~~L~---~l~e~~~~l 591 (717)
T PF10168_consen 546 KVLREEYIEKQ----DLAREEIQRRVKLLKQQKEQQLKELQ---ELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 35665433322 23445566678889999999987554 455566655
No 200
>KOG0980|consensus
Probab=53.94 E-value=3.4e+02 Score=35.78 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHH
Q psy16785 72 LYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLA 149 (1642)
Q Consensus 72 LYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~a 149 (1642)
=|-+++.-.++..+.+...+.-+..|. -+|.+++.+...=.-|+.+..+....|+.+..++..+++.++.++..+..
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~-d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLN-DQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344455444454444443332222221 23333333333323355566666666666666666666666666444433
No 201
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.76 E-value=4e+02 Score=30.69 Aligned_cols=139 Identities=24% Similarity=0.326 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHhhcCc---hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESP---EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 112 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~---~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE 112 (1642)
.+...|.+|...+.+-. .-++.|.+.=-.=+..|=.=||.|. .-++.+++---..-.|.+||+......+.++
T Consensus 111 kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE----~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e 186 (309)
T PF09728_consen 111 KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELRE----EHFEKLLKQKELEVQLAEAKLEQQQEEAEQE 186 (309)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34567778887777433 3556665544444555666677663 3445555533344466779998888888888
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKL 182 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~m 182 (1642)
.++.+.+.+.+..=...|+++...-..|+.++.....=-..+..-++==|.+|.++ ..++|++.+-
T Consensus 187 ~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tf----k~Emekm~Kk 252 (309)
T PF09728_consen 187 KEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETF----KKEMEKMSKK 252 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHH
Confidence 88888888743333336666666777777777766655566667777777777766 3445555443
No 202
>PRK00295 hypothetical protein; Provisional
Probab=53.69 E-value=39 Score=31.29 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 165 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LF 165 (1642)
+++||..||..+.-..+.|+.||..+...+.+-..|..+|..+..=+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999888888888887664433
No 203
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.60 E-value=2.7e+02 Score=32.52 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEI 872 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dL 872 (1642)
..|+.+|+.+|+++...+.+..-.+
T Consensus 253 ~~~l~~l~~~l~~l~~~y~~~hP~v 277 (498)
T TIGR03007 253 DGRIEALEKQLDALRLRYTDKHPDV 277 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccChHH
Confidence 3667788888888877777774333
No 204
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=53.49 E-value=2.9e+02 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHH
Q psy16785 38 KTRLKDVEKKLLESP------EEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 38 K~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~ 68 (1642)
..|=..|.+.+.+.+ ..+..+|+++|.+.|.
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ 93 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQE 93 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444322 2788899999888764
No 205
>KOG0982|consensus
Probab=53.44 E-value=2.9e+02 Score=34.01 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=73.6
Q ss_pred eehhhHHHHHHHHHHHhh---cCchHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 32 FKVSDLKTRLKDVEKKLL---ESPEEIKIEYEKQMTNYKKLRELYEQ---RAAAAELEHKTMIEKELAKNALLEAKLKEI 105 (1642)
Q Consensus 32 ~keaQLK~KL~EIE~Sla---E~~~DLR~EYEKQL~NIR~LRqLYEE---RaRaAa~e~e~LiRle~~KndLeEaKl~e~ 105 (1642)
-|+.-|+.|.++.|+.-. .+..-+|+||--=..-+--|-++|.+ ||.-+-.+.+...|-+++|+.-+ |
T Consensus 222 ~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eRe-a----- 295 (502)
T KOG0982|consen 222 RKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKERE-A----- 295 (502)
T ss_pred HHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-H-----
Confidence 344556777777777333 66778999996544446666666643 56666666666667666666522 1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~ 159 (1642)
.++ +.+++-+++.|+.++..+...+..|+..|-..-.|.+-+..++.
T Consensus 296 ------sle-~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 296 ------SLE-KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred ------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 111 12466677888888888888888888777766666655554443
No 206
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=53.41 E-value=1.6e+02 Score=37.13 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE-KELAKNALLEAKLKEIQEEIQAQLE 114 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR-le~~KndLeEaKl~e~~~elqaE~e 114 (1642)
+|+.|++=|+.||+-++|-|-.==-|-..|+..++.+-+.|...=...|+.|.. .+..|++|-|.|--.|=.-+..|..
T Consensus 203 ~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~ 282 (683)
T PF08580_consen 203 ALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQ 282 (683)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 568999999999999998775544566889999999999999998889999888 8888999888887655544444443
No 207
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=53.27 E-value=3.3e+02 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=14.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccC
Q psy16785 843 TRSVILPLVSDLKTRLKDVEKKLLES 868 (1642)
Q Consensus 843 trsvrE~Qv~qLK~kL~qIE~sL~Er 868 (1642)
-.+++ ++++++|.+....+.-+.+-
T Consensus 29 IksLK-eei~emkk~e~~~~k~m~ei 53 (201)
T PF13851_consen 29 IKSLK-EEIAEMKKKEERNEKLMAEI 53 (201)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444 35677777766666665543
No 208
>PRK00736 hypothetical protein; Provisional
Probab=53.25 E-value=52 Score=30.54 Aligned_cols=49 Identities=12% Similarity=0.310 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
++.+|..||..+.-+.+-|+.|+..+..-+.+...|+.+|.++..=+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999998888999999998888888888888888877654443
No 209
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.20 E-value=5.3e+02 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=17.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhcc
Q psy16785 844 RSVILPLVSDLKTRLKDVEKKLLE 867 (1642)
Q Consensus 844 rsvrE~Qv~qLK~kL~qIE~sL~E 867 (1642)
....+.|+.+|+.+|.+.|..+..
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888888877654
No 210
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.67 E-value=2.5e+02 Score=36.49 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~ 159 (1642)
+-+-|.++-.+..-+|+.+.+...+.+--+++.-...=.|.|+.-|+
T Consensus 507 l~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 507 LVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666677777777666666666665555566655554
No 211
>KOG0946|consensus
Probab=52.59 E-value=1.3e+02 Score=39.01 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=51.9
Q ss_pred HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC---CCCChHHHHHHHHHhHHHHH
Q psy16785 932 KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLDMLIKLIQDNYLLII 1008 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG---~~iDLDrL~~lLEENr~LL~ 1008 (1642)
+.+.|+-++++|+++|+-...++.++.. +...|+.|++.|+.=--.|+-| ..+.-.-|...+.||-.|..
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~-------q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~ 751 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKD-------QLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLEN 751 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHH
Confidence 4556666666666666665555555554 5567889999999888888888 66666778888888888876
Q ss_pred HH
Q psy16785 1009 DL 1010 (1642)
Q Consensus 1009 dM 1010 (1642)
+-
T Consensus 752 ~q 753 (970)
T KOG0946|consen 752 DQ 753 (970)
T ss_pred HH
Confidence 55
No 212
>PRK02119 hypothetical protein; Provisional
Probab=52.30 E-value=46 Score=31.26 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 166 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFS 166 (1642)
..+++||..||..+.-..+.|+.||..+...+.+-..|..+|..+..=+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999988887754433
No 213
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.16 E-value=56 Score=37.22 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=66.8
Q ss_pred hHHHHHHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhH
Q psy16785 1165 FIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNI 1244 (1642)
Q Consensus 1165 yIRLKDLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrL 1244 (1642)
=-.|+.|-.|.+.|.+|+..|..=+..|+..|...+..+..+..+-.+.|+..+.++.+..++.- =
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~--------------e 114 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQE--------------E 114 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 34788899999999999999999999999999999999999888888999999988876544322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy16785 1245 INDLKIDLEYVREKWDLVKEK 1265 (1642)
Q Consensus 1245 LsELKeELEYCReKW~~AR~K 1265 (1642)
+..|+..++|...+.+..|.-
T Consensus 115 ~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666655554433
No 214
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.84 E-value=2.5e+02 Score=31.19 Aligned_cols=100 Identities=13% Similarity=0.282 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHhccC----chHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES----PEEIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIEKELAKNALLEAKLKEIQ 923 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er----s~dLr~EYERQL~NIR~LR~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e~K 923 (1642)
.++.++-.+|+++....+.. -.+.=.||-|= |...|.++.+|.++ .....- +.++.| +....-|
T Consensus 83 ~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~---i~svK~~f~~R~k~~~~~~~a---~~~L~k-----kr~~~~K 151 (234)
T cd07664 83 SQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRL---IAAVKGVFDQRMKCWQKWQDA---QVTLQK-----KREAEAK 151 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHH
Confidence 47888888888887766665 34556788664 56777899999988 333221 122221 1111111
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNE 959 (1642)
Q Consensus 924 ~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e 959 (1642)
-......+|...++..|..++..++.+..+.+.+-+
T Consensus 152 l~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~ 187 (234)
T cd07664 152 LQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISK 187 (234)
T ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223456667777777777777777666655443
No 215
>KOG4673|consensus
Probab=51.73 E-value=4.4e+02 Score=34.25 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=26.5
Q ss_pred cceeeeehhhHHHHHHHHHHHhhcCchHHHHHH
Q psy16785 27 TSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEY 59 (1642)
Q Consensus 27 KqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EY 59 (1642)
-+|++..+.+|..+|+--|.+++-++.-+|-|.
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei 614 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQAARREDMFRGEI 614 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999997776555443
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=51.52 E-value=5.3e+02 Score=31.44 Aligned_cols=63 Identities=14% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 916 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 916 qr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
..+|++.|..|+.-.+-...|..-+..|..+++....++..++++........-.|+.++.-+
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~ 349 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKT 349 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Confidence 355666666665444444555566666666666666666666666666666666666665443
No 217
>KOG0933|consensus
Probab=51.25 E-value=4e+02 Score=35.75 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcC----chHHHH------HHHHHHHhHHHHHHHHHHHHH
Q psy16785 39 TRLKDVEKKLLES----PEEIKI------EYEKQMTNYKKLRELYEQRAA 78 (1642)
Q Consensus 39 ~KL~EIE~SlaE~----~~DLR~------EYEKQL~NIR~LRqLYEERaR 78 (1642)
+||+||-.-|.+. ..-||. ||.+=..-+-.|+.+|..++=
T Consensus 190 tKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY 239 (1174)
T KOG0933|consen 190 TKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEY 239 (1174)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776555522 125554 466666666677777766653
No 218
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=51.10 E-value=3.7e+02 Score=32.74 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHH---hccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 850 LVSDLKTRLKDVEKK---LLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~s---L~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
.+.+.|..|..+..- |..-..-|+.|-++.=..+..||+ |...+...-.+ |+.+|...+.+|
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke----~e~~a~~~v~~-----------L~~eL~~~r~eL 353 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE----REKEASSEVSS-----------LEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHhh-----------HHHHHHHHHHHH
Confidence 344444444444322 222255567776666666666665 33333333333 557777777777
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 983 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFS 983 (1642)
++-...-+...+....|-..++.+..|.+..+......+.|.+-+..++--...-+.
T Consensus 354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555666666666666666666666666666666666666655544443
No 219
>KOG4807|consensus
Probab=50.99 E-value=1.1e+02 Score=37.01 Aligned_cols=92 Identities=23% Similarity=0.294 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HhhhhhHHHHHHH
Q psy16785 66 YKKLRELYEQRAAAAELEHKTMIE-KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEME----KNIQLKDDEINNL 140 (1642)
Q Consensus 66 IR~LRqLYEERaRaAa~e~e~LiR-le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LE----keVetk~dEi~~l 140 (1642)
-|-|-.|-||..|+-+-+--.-+- .+.|||+ -+|++..|++|++.++.-+..|- .+|+..+-|++-|
T Consensus 362 qRELekLreEKdrLLAEETAATiSAIEAMKnA--------hrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVL 433 (593)
T KOG4807|consen 362 QRELEKLREEKDRLLAEETAATISAIEAMKNA--------HREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVL 433 (593)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH--------HHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667777765555554444 6778887 46789999999999988887764 5788899999999
Q ss_pred HHHhhhcHHHHHHhHHHHHHHHHHH
Q psy16785 141 NENLTSSLAENHILNSQMTLVNNLF 165 (1642)
Q Consensus 141 ~e~l~s~~aE~r~L~aQM~~VN~LF 165 (1642)
-++|+.--.|+--|..++.+--+-+
T Consensus 434 SEQYSQKCLEnahLaqalEaerqaL 458 (593)
T KOG4807|consen 434 SEQYSQKCLENAHLAQALEAERQAL 458 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887777766666555544433
No 220
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.98 E-value=85 Score=29.23 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 909 LAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 909 ~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
+||.++- .+|.-.|....+-..|.++.+.++..|+.+|..+..+++.++
T Consensus 11 rakQ~~~-eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQ-EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555443 556666666665555556666666666666666666655544
No 221
>PRK12704 phosphodiesterase; Provisional
Probab=50.94 E-value=2.9e+02 Score=33.79 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=10.7
Q ss_pred hhHHHHHhcccccccccc
Q psy16785 1503 IKNFWKIFGKFKTVNKNF 1520 (1642)
Q Consensus 1503 ~~~~~~~~~~~~~~~~~~ 1520 (1642)
+..|=+|...|..|-+-|
T Consensus 445 l~~le~i~~~~~gv~~~y 462 (520)
T PRK12704 445 LEKLEEIANSFEGVEKAY 462 (520)
T ss_pred HHHHHHHHHhCCcHHHHH
Confidence 445556666666666655
No 222
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.64 E-value=5.9e+02 Score=31.68 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHH
Q psy16785 121 KQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 166 (1642)
Q Consensus 121 eri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFS 166 (1642)
..++.|..+...+..++..+...++..--....+++|+..++..+.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555655555555555555555555555443
No 223
>KOG3850|consensus
Probab=50.55 E-value=4e+02 Score=32.54 Aligned_cols=131 Identities=25% Similarity=0.324 Sum_probs=68.4
Q ss_pred cCCCCCc-chhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHH
Q psy16785 829 PMHSTPP-ESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEK 907 (1642)
Q Consensus 829 ~m~~t~~-~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~k 907 (1642)
|.|+... +.-||.. +++.|.-+..|+.++..=.++++.||. =| +--|-|||=|-+.||..-
T Consensus 254 ~~~s~~~~l~ailee--------L~eIk~~q~~Leesye~Lke~~krdy~----fi--~etLQEERyR~erLEEqL---- 315 (455)
T KOG3850|consen 254 PYHSQGAALDAILEE--------LREIKETQALLEESYERLKEQIKRDYK----FI--AETLQEERYRYERLEEQL---- 315 (455)
T ss_pred cccccchHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHH----
Confidence 5565555 4444444 444444555566655433445555553 33 235778888887776543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhH-HHHHHHHHHhhhc-----HHHHHHhHHHH---hHH
Q psy16785 908 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD-DEINNLNENLTSS-----LAENHILNSQM---TLV 978 (1642)
Q Consensus 908 e~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~-dEi~~l~e~l~~t-----kaE~r~L~~QM---~lV 978 (1642)
|.|+ +.+++|+- ||+.+++.|++.|.-+. +--.++++.+.+| +-|..+.+.|+ ..+
T Consensus 316 ----Ndlt----eLqQnEi~-------nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~ 380 (455)
T KOG3850|consen 316 ----NDLT----ELQQNEIA-------NLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEGL 380 (455)
T ss_pred ----hHHH----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222 33333333 77777888888876543 2233444444333 34555444433 344
Q ss_pred HHHHHHhhcCCCCC
Q psy16785 979 NNLFSNMLINPMIN 992 (1642)
Q Consensus 979 N~LFSqmLLG~~iD 992 (1642)
++---+-|+|.-+|
T Consensus 381 ~na~a~~llgk~iN 394 (455)
T KOG3850|consen 381 ENAVARRLLGKFIN 394 (455)
T ss_pred hhccHHHHHHHHHH
Confidence 44445566664444
No 224
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.45 E-value=1.4e+02 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.383 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLN 141 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~ 141 (1642)
....|.+|+.+++.+++++.+.+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 225
>PF13514 AAA_27: AAA domain
Probab=50.35 E-value=7.2e+02 Score=32.65 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 946 NIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 946 dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
+.+.+..++..++..+.....+...+..+++-++.-+..+
T Consensus 890 d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 890 DPDELEAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666677777777777767664
No 226
>KOG0976|consensus
Probab=50.29 E-value=6.1e+02 Score=33.56 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=44.1
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH-HHHHH
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV-NNLFS 983 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV-N~LFS 983 (1642)
=+|..+||++-+.++.+|...++-+++.++.+.+.+.+...++.||... |.+|+
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~ 404 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFR 404 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456677777777888899999999999999999999999999999876 44554
No 227
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=50.21 E-value=3.4e+02 Score=34.94 Aligned_cols=111 Identities=25% Similarity=0.373 Sum_probs=60.9
Q ss_pred ehhhHHHHHHHHHHHhhcCch---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPE---EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 109 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~---DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~el 109 (1642)
||+.|..+|.++|.-+..+.. +.+.|-+|=.+=+..|+.=+| ..++++. .+|.++-|.|..|
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~----~~e~~~~------~lr~e~ke~K~rE----- 92 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECE----DLELERK------RLREEIKEYKFRE----- 92 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHH-----
Confidence 566677777777766653221 333333332222222222211 1222332 3566888888866
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhH---HHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 110 QAQLEKYKENKKQILEMEKNIQLKD---DEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 110 qaE~eK~K~leeri~~LEkeVetk~---dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
+--+.-|.+|++.|-.|+|.|..+. -|++-++=++.....|...|++|+
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~ql 144 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQL 144 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356679999999999999998764 345544444444444444444443
No 228
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.06 E-value=24 Score=36.61 Aligned_cols=49 Identities=31% Similarity=0.366 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 156 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~a 156 (1642)
+++..+...+-.+-.+.+|+.++..++-||..|++++.....-++.|..
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344666677788889999999999999999999999999888877754
No 229
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.00 E-value=4.1e+02 Score=30.27 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=16.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 941 LEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 941 ~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
..|..+++++.+.+.+|+.++.....+...|+.+...
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 230
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=49.98 E-value=3.6e+02 Score=29.04 Aligned_cols=114 Identities=22% Similarity=0.315 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccC---chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 855 KTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLE 931 (1642)
Q Consensus 855 K~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~e 931 (1642)
..=++||=-.-.|| ...+|.||..=+..| ..||+..-.-. -+.. +..+..++.+- ..++..+.+...=..
T Consensus 69 ~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y---~~l~~s~~~f~--~rk~-l~~e~~~~~l~-~~i~~L~~e~~~L~~ 141 (189)
T PF10211_consen 69 DELIRQVTIDCPERGLLLLRVRDEYRMTLDAY---QTLYESSIAFG--MRKA-LQAEQGKQELE-EEIEELEEEKEELEK 141 (189)
T ss_pred HHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44467777777777 788899996655554 56676543321 1111 11111122222 333333333332222
Q ss_pred HhHhHHHHHHHHHHhhhh-hHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 932 KYKENKKQILEMEKNIQL-KDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~-~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+...++.....+++..+. ...+....++++...+....+|.+++
T Consensus 142 ~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 142 QVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333333332 23344445555555556666666554
No 231
>KOG0971|consensus
Probab=49.82 E-value=6e+02 Score=34.03 Aligned_cols=111 Identities=20% Similarity=0.263 Sum_probs=65.5
Q ss_pred HHHHHHHhhhhhcccchhhhhhch-hhhHHHHHHHHHHhhhh-------h-----------hhHHHHH------------
Q psy16785 1188 LNNHLEIRLNHSEQRLNTVTTELK-KTWNVVNKLKLQHKQLY-------T-----------HEKILKY------------ 1236 (1642)
Q Consensus 1188 LN~HLE~RL~eQEKRLS~VS~ELt-KTWhlVgKMqrQHrQLH-------T-----------hEkILRY------------ 1236 (1642)
|=..|-.-|...+.=|+.-+.|+. |.=...|-|-+|-++|- + =.+.|.|
T Consensus 672 ll~slqaaL~q~e~al~~c~vdvl~ka~~~y~emsahEk~lD~~ieLLkk~qlDEntn~e~i~k~l~yfq~m~s~hl~~q 751 (1243)
T KOG0971|consen 672 LLSSLQAALHQYEHALSQCSVDVLKKAGSLYPEMSAHEKSLDFLIELLKKDQLDENTNVEPITKALKYFQHLYSIHLAEQ 751 (1243)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHhhccchhhHHHHHHHHHHHHHhhcccccccCcchHHHHHHHHHHHHHHhcccc
Confidence 334445555566666666665543 33445566666655431 1 1233444
Q ss_pred ---HHHhHhhHHHHHHHHHHHHHHHHHHHHhhhccCHHHH------HHHHHHHH---------hhhhccCCCCCcccccC
Q psy16785 1237 ---ELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDY------KVLRKEFA---------LRRLQYDGGRSTSESGI 1298 (1642)
Q Consensus 1237 ---eLQqKRrLLsELKeELEYCReKW~~AR~KN~eSE~qw------k~LR~EFA---------~RK~~~d~~nnSaESGy 1298 (1642)
+-|+=+-++--|---|+||+--=..+|.=..+..+.- +.|-.+|+ .||+. +.-+-.++|.
T Consensus 752 llde~q~~~d~iasl~A~ld~~~vnt~r~~~flQe~~eatds~~llq~Lne~~~a~rq~~kki~RrLp--gd~~g~~~gl 829 (1243)
T KOG0971|consen 752 LLDETQQLADHIASLQAALDCMSVNTGRLRAFLQEGQEATDSALLLQDLNESCSAIRQFCKKIRRRLP--GDAPGIPAGL 829 (1243)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCcccHHHh
Confidence 3567788888888899999988877776655554432 23444443 46664 4456677777
Q ss_pred CC
Q psy16785 1299 ST 1300 (1642)
Q Consensus 1299 SD 1300 (1642)
+-
T Consensus 830 ~~ 831 (1243)
T KOG0971|consen 830 AF 831 (1243)
T ss_pred hh
Confidence 73
No 232
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=49.81 E-value=3.2e+02 Score=28.46 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=32.5
Q ss_pred eeehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCc------hHHHHHHHHHHHhHHHHHHHH
Q psy16785 2 VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESP------EEIKIEYEKQMTNYKKLRELY 73 (1642)
Q Consensus 2 ~~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~------~DLR~EYEKQL~NIR~LRqLY 73 (1642)
+.|.||.+++.+-.++.|..++ .+|-..|.+.+.+-. ..+..+|+.+|.+-|.-.+..
T Consensus 14 i~F~ill~ll~~~~~~pi~~~l--------------~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~I 77 (161)
T COG0711 14 IAFVILLWLLKKFVWKPILKAL--------------DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEI 77 (161)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455665665555555555443 344444444444222 267789999988877444433
No 233
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=49.79 E-value=4.4e+02 Score=30.26 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q psy16785 176 LDMLIKLIQDNYLLIIDLINN 196 (1642)
Q Consensus 176 lDrLi~mLEENr~LL~dMt~n 196 (1642)
+.+|.+-++=|+.++..+...
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r 364 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQR 364 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666555544
No 234
>KOG4438|consensus
Probab=49.56 E-value=5.1e+02 Score=31.96 Aligned_cols=202 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh-hcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHH
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT-SSLAENHILNSQMTLVNNLFSNMLINPMINLDMLI 997 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~-~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~ 997 (1642)
+.+.+..+.|. ++++.+++...+.++..-..|+.+++++.. +-+-...+-+-||.|.=..=+.-.....++.++|.
T Consensus 143 lle~~~q~da~---~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~ 219 (446)
T KOG4438|consen 143 LLELRKQLDAK---YQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILN 219 (446)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Q ss_pred HH------HHHhHH-HHHHHhhccccccchhhhhhhhhhcchhhhhhhhhHHHhhhhcccCCchhhhHHHhhccCCCCCc
Q psy16785 998 KL------IQDNYL-LIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSK 1070 (1642)
Q Consensus 998 ~l------LEENr~-LL~dMt~~~einet~s~l~d~A~kE~s~tlaa~LPKlL~~~e~~~~~~~~dLVeqVe~~~~s~s~ 1070 (1642)
.+ |+||.. |.+.+ +..-..|+..-.+- .-+-+..-+.+ -+|+++...-++
T Consensus 220 al~llv~tLee~~~~LktqI------V~sPeKL~~~leem--k~~l~k~k~~~-----------~~l~~K~~iL~e---- 276 (446)
T KOG4438|consen 220 ALKLLVVTLEENANCLKTQI------VQSPEKLKEALEEM--KDLLQKEKSAM-----------VELQEKAKILEE---- 276 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHH--HHHHHHHHHHH-----------HHHHHHHHHHHh----
Q ss_pred ccccccccccccCCCCCCCCCccCCCccccccccCCHHHHHhhchhHHHHHHHHhhhhcccccCCCcCcccccccccccc
Q psy16785 1071 DSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKT 1150 (1642)
Q Consensus 1071 ds~~~q~dd~~~ns~~e~~~~~~e~n~~~~~~k~~s~eEIa~NLPKVWRVLiELLS~Hqe~~e~~~~~e~~~~CyKsv~T 1150 (1642)
+..+.+=|..-|-++-+++.+..- .++..
T Consensus 277 --------------------------------kv~~~qti~~e~~~~lk~i~~~~~----e~d~~--------------- 305 (446)
T KOG4438|consen 277 --------------------------------KVTNLQTIEKELKALLKKISSDGV----EYDSL--------------- 305 (446)
T ss_pred --------------------------------HhHHHHHHHHHHHHHHHHHHHhhh----hhhhh---------------
Q ss_pred CCCccceEeeehhhhHHHHHHH----hhhhhhHHHHhhhhHHHHHH---HHhhhhhccc
Q psy16785 1151 NTGKTHQVISVSQTFIRLKHLI----LEKNHLTNQLAKLKTLNNHL---EIRLNHSEQR 1202 (1642)
Q Consensus 1151 ~~Gpe~~ViSVSKTyIRLKDLI----LEKKsL~KEtNRLKtLN~HL---E~RL~eQEKR 1202 (1642)
...++.=++-..|-|+| +|++.+++.-|-.|+||.|+ +.+.++-+.|
T Consensus 306 -----Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r 359 (446)
T KOG4438|consen 306 -----ETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENR 359 (446)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 235
>KOG0977|consensus
Probab=49.56 E-value=5.7e+02 Score=32.16 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhh
Q psy16785 54 EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLK 133 (1642)
Q Consensus 54 DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk 133 (1642)
.++.=||..+...|.+ -++=+ ....+.+.-|.+-.--.+-...|+.+.+.+...-.++......++..++-++.++
T Consensus 85 ~ik~~ye~El~~ar~~---l~e~~-~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~ 160 (546)
T KOG0977|consen 85 GIKAKYEAELATARKL---LDETA-RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTL 160 (546)
T ss_pred chhHHhhhhHHHHHHH---HHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHH
Confidence 5677788776655543 32211 1112222223321112222234455566678888889999999999999999999
Q ss_pred HHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC
Q psy16785 134 DDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 171 (1642)
Q Consensus 134 ~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg 171 (1642)
+-.|..+.+++...+.|.-.|-.++..+-+..-+=.++
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877665554
No 236
>KOG0249|consensus
Probab=49.42 E-value=2.5e+02 Score=36.41 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhHhhhHHH-HHHHH-HH---HHHHHHHHHHHHHHH
Q psy16785 856 TRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIEK-ELAKN-AL---LEAKLKEIQEEIQAQ 929 (1642)
Q Consensus 856 ~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv-aele~e~~i~k-e~akn-~L---lqr~L~e~K~eLqae 929 (1642)
.+|-++|..|+.|-+.+..--++--.=+-.++.||++=+|. +++.+-+.-++ +.+-| .| +..-|..++.+.++-
T Consensus 135 e~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaA 214 (916)
T KOG0249|consen 135 ETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAA 214 (916)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHH
Confidence 45667788888887777766555555567899999988887 67766552221 01111 11 122355566666666
Q ss_pred HHHhHhHHHHHHHHHHhhhhhH
Q psy16785 930 LEKYKENKKQILEMEKNIQLKD 951 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~ 951 (1642)
+++-.-|+.++..+.+.+++++
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~ 236 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMR 236 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555555444
No 237
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.11 E-value=4.8e+02 Score=30.88 Aligned_cols=65 Identities=29% Similarity=0.340 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHHHh
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLIN 195 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dMt~ 195 (1642)
.|..+|..|+++...+..++++|+.+--. .|+-.=++|=.+||.|..|| -+|-.|++.|=..+.+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVd--lEn~LE~EQE~lvN~L~Kqm-----------~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVD--LENTLEQEQEALVNRLWKQM-----------DKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcc
Confidence 45567777777777777777777665433 56666678889999999876 3566777776555543
No 238
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.08 E-value=2.2e+02 Score=30.87 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNL 164 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~L 164 (1642)
+++++.|.+|+..+-.++.+.+.+..+-.....|-..|++.+..+|.-
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555555444445555555555555443
No 239
>KOG0996|consensus
Probab=49.04 E-value=4e+02 Score=36.21 Aligned_cols=129 Identities=25% Similarity=0.361 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHHHHHHHhccC----------chHHHHHHHHHHHhHHHHHHHHHHHHH-H----HHHhHh--------h
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLES----------PEEIKIEYEKQMTNYKKLRELYEQRAA-A----AELEHK--------T 903 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Er----------s~dLr~EYERQL~NIR~LR~LYEER~R-v----aele~e--------~ 903 (1642)
+++++.-+..++..+|+.+.+- +.+.+.+-++=..+|.+|-.+-+-=.+ + +.++.+ .
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~ 482 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIE 482 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4455555555555554444322 566666666666777777655432111 1 111110 1
Q ss_pred hHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhH
Q psy16785 904 MIEKE-----------LAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILN 972 (1642)
Q Consensus 904 ~i~ke-----------~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~ 972 (1642)
.++|+ .++-.+.+-+|++.+....+.+.|...++..+..+.+..+...+++..+...|...+.|..+..
T Consensus 483 ~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~ 562 (1293)
T KOG0996|consen 483 KLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKE 562 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 13333 3344566777888888888889999999999999999888888888888888888887777665
Q ss_pred HHH
Q psy16785 973 SQM 975 (1642)
Q Consensus 973 ~QM 975 (1642)
.++
T Consensus 563 k~l 565 (1293)
T KOG0996|consen 563 KEL 565 (1293)
T ss_pred HhH
Confidence 544
No 240
>KOG0964|consensus
Probab=48.98 E-value=3.1e+02 Score=36.60 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=70.1
Q ss_pred hhhhHHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHH----HHHHHHHHHHH----HHHhHhhhHHHHHHH----
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKK----LRELYEQRAAA----AELEHKTMIEKELAK---- 911 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~----LR~LYEER~Rv----aele~e~~i~ke~ak---- 911 (1642)
-..+++.++.++.+.++.|++- -++|..|=.+--.-|.. .+.||----|. +.-+|++-|.+|+-+
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~ 405 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRG 405 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443 23333333322223333 34466544443 234555544444322
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 912 -------NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 912 -------n~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
-+.++.+++....++.+-+++.+.++.-|.+..-.++..+.++..++.++...+.....|--+=..+-.
T Consensus 406 i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~---- 481 (1200)
T KOG0964|consen 406 INDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRS---- 481 (1200)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 122334444444444444444444444444444444444444444444444444333333222222211
Q ss_pred hhcCCCCChHHHHHHHHHhHHHHHHHhh
Q psy16785 985 MLINPMINLDMLIKLIQDNYLLIIDLIN 1012 (1642)
Q Consensus 985 mLLG~~iDLDrL~~lLEENr~LL~dMt~ 1012 (1642)
-|+.+-.+|.-+-..|..|+.
T Consensus 482 -------~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 482 -------LIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred -------HHHHHHHHHHHHHHHHHHhcc
Confidence 245566677777777777754
No 241
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=48.63 E-value=88 Score=32.56 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 58 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 89 (1642)
Q Consensus 58 EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR 89 (1642)
+|-+.|.|||.|| +.+.++..+.|..
T Consensus 3 ~~lk~l~n~R~lr------a~~re~~~e~Lee 28 (134)
T PRK10328 3 VMLQSLNNIRTLR------AMAREFSIDVLEE 28 (134)
T ss_pred HHHHHHhhHHHHH------HHHHhCCHHHHHH
Confidence 4668899999995 4455555555443
No 242
>PRK00736 hypothetical protein; Provisional
Probab=48.58 E-value=67 Score=29.81 Aligned_cols=49 Identities=12% Similarity=0.310 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
++.||..||..+.-..+.|+.||..+...+.+...|..+|.++..=+..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888888888888776554444
No 243
>KOG0964|consensus
Probab=48.49 E-value=8.5e+02 Score=32.94 Aligned_cols=150 Identities=22% Similarity=0.231 Sum_probs=95.3
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHH---------------hH-HHHHHHHHHHHHHHHHh
Q psy16785 837 SNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMT---------------NY-KKLRELYEQRAAAAELE 900 (1642)
Q Consensus 837 ~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~---------------NI-R~LR~LYEER~Rvaele 900 (1642)
.-.+-.+..-+..++..+++.|..++.+...-.++|..|.--||+ ++ ..|+++-++|.. -+.
T Consensus 736 ~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~--~~~ 813 (1200)
T KOG0964|consen 736 KSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERID--IET 813 (1200)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHH
Confidence 344555667788899999999999998887777777777755443 22 134555555544 233
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 901 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEK---------YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 971 (1642)
Q Consensus 901 ~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK---------~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L 971 (1642)
+.+.++-++ ...|....++|++++.. .++.+.++...++.++..--++..++..+...+|+...+
T Consensus 814 rk~~le~~l------~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~ 887 (1200)
T KOG0964|consen 814 RKTALEANL------NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEI 887 (1200)
T ss_pred HHHHHHHHH------HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334333333 34444455555555432 345556667777777777777777888888888888888
Q ss_pred HHHHhHHHHHHHHhhcCCCCChHHH
Q psy16785 972 NSQMTLVNNLFSNMLINPMINLDML 996 (1642)
Q Consensus 972 ~~QM~lVN~LFSqmLLG~~iDLDrL 996 (1642)
+..|.-.++|= .-.++. +|+|+-
T Consensus 888 ~~~lE~~~~le-k~~~~~-~~~dKe 910 (1200)
T KOG0964|consen 888 KKELEKAKNLE-KEKKDN-INFDKE 910 (1200)
T ss_pred HHHHHHHHHHH-HHHhhh-hhhhHH
Confidence 88887777654 344455 777743
No 244
>KOG0999|consensus
Probab=48.46 E-value=72 Score=39.82 Aligned_cols=91 Identities=29% Similarity=0.351 Sum_probs=76.2
Q ss_pred HHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhh----h----------------HHHH--HHHHhHhhHHHHHH
Q psy16785 1192 LEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTH----E----------------KILK--YELKHKRNIINDLK 1249 (1642)
Q Consensus 1192 LE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHTh----E----------------kILR--YeLQqKRrLLsELK 1249 (1642)
|+-++.+.|--+...-.||.+|-.-+|+.+.||+..--. | +|+. -+|+|+|..|..-+
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777788899999999999999999986421 1 4543 47999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHh
Q psy16785 1250 IDLEYVREKWDLVKEKNEQNELDYKVLRKEFAL 1282 (1642)
Q Consensus 1250 eELEYCReKW~~AR~KN~eSE~qwk~LR~EFA~ 1282 (1642)
.|+|.--.+-+-...-|...|.|-..||.|+--
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe 160 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQRRRLRDELKE 160 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999998643
No 245
>KOG0804|consensus
Probab=48.42 E-value=3.1e+02 Score=33.91 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 953 EINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 953 Ei~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
..+..++.+.+..+...+|++|+.
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 422 LEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666677777764
No 246
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=48.05 E-value=2.1e+02 Score=33.59 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.0
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCch
Q psy16785 835 PESNILATTRSVILPLVSDLKTRLKDVEKKLLESPE 870 (1642)
Q Consensus 835 ~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~ 870 (1642)
|--+-.-|-.--+|--+--||.||++-+++|.+|-.
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRet 89 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRET 89 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444566677888888999999999999999843
No 247
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.04 E-value=3.7e+02 Score=28.67 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=12.8
Q ss_pred HHHHhhccchhHHHHHHHhhcccc
Q psy16785 226 LKQLENYETPMSSAMVEAVESNQT 249 (1642)
Q Consensus 226 ~eeIi~NLPKVWkvLmELLsH~~~ 249 (1642)
..+|..-|--|+.. +-||+++=.
T Consensus 194 ~~~isaALgyvahl-v~lls~yL~ 216 (302)
T PF10186_consen 194 DEEISAALGYVAHL-VSLLSRYLG 216 (302)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhC
Confidence 45565666666653 446666543
No 248
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.61 E-value=3.6e+02 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=13.9
Q ss_pred hhHHHHHhcccccccccce
Q psy16785 1503 IKNFWKIFGKFKTVNKNFM 1521 (1642)
Q Consensus 1503 ~~~~~~~~~~~~~~~~~~~ 1521 (1642)
+.+.-.||..|..|++-|-
T Consensus 439 l~~le~i~~~~~gv~~~~a 457 (514)
T TIGR03319 439 LEKLEEIANSFEGVEKSYA 457 (514)
T ss_pred HHHHHHHHHhCCCchhhhh
Confidence 4455678888888888774
No 249
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.35 E-value=1.4e+02 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q psy16785 883 YKKLRELYEQRAAA 896 (1642)
Q Consensus 883 IR~LR~LYEER~Rv 896 (1642)
+-.+..||++|..+
T Consensus 28 vd~i~~ld~~~r~l 41 (108)
T PF02403_consen 28 VDEIIELDQERREL 41 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666444
No 250
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.07 E-value=1.7e+02 Score=30.76 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC-CCCChHHHHHH
Q psy16785 936 NKKQILEMEK---NIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN-PMINLDMLIKL 999 (1642)
Q Consensus 936 lEe~i~~Le~---dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG-~~iDLDrL~~l 999 (1642)
..+.|..|.+ +++.++.+|+.|+.+....+++-..--.+|.. |..+...|.| ---|.+-+..+
T Consensus 39 ~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~akakn~~av~al 105 (155)
T PF06810_consen 39 ADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAKAKNPKAVKAL 105 (155)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHh
Confidence 3344444444 66666666666666666444443333333433 5566666666 33444444433
No 251
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.91 E-value=2.1e+02 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSL 148 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~ 148 (1642)
+++++..++..+..+...+..++.++....
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333
No 252
>KOG0612|consensus
Probab=46.70 E-value=6.9e+02 Score=34.23 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC---CCCCHHHHHHHHHH
Q psy16785 109 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLDMLIKLIQD 185 (1642)
Q Consensus 109 lqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg---~~~DlDrLi~mLEE 185 (1642)
+|.+.+.+..+++.+..|++.-..+..+..+++...-....-...+....+.+-.=|+-+-.. -+..+-++-.+=.+
T Consensus 576 iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~ 655 (1317)
T KOG0612|consen 576 IQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRE 655 (1317)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444455555544444444444444444333333333333333333333333333321 34455555544445
Q ss_pred hHHHHHHHHh
Q psy16785 186 NYLLIIDLIN 195 (1642)
Q Consensus 186 Nr~LL~dMt~ 195 (1642)
|..-++|+..
T Consensus 656 ~~e~~~~~ek 665 (1317)
T KOG0612|consen 656 NQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 253
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.61 E-value=4.5e+02 Score=29.21 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHH
Q psy16785 35 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLREL 72 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqL 72 (1642)
+|+..-|.-+|.+|+ ||-+-|+|+=..|-.++.-
T Consensus 79 dq~~~dL~s~E~sfs----dl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 79 DQAYADLNSLEKSFS----DLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred HHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHh
Confidence 555667777888877 7888888887777666654
No 254
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.58 E-value=6.4e+02 Score=30.92 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKLRE 888 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~LR~ 888 (1642)
+.++++++..+.+|+..+.+. .+.+++.-...-.||..|..
T Consensus 65 ~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 65 EKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 345666666666666666665 33334444444455555543
No 255
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=46.53 E-value=85 Score=34.67 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHHhccC-------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLES-------PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLK 920 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Er-------s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~ 920 (1642)
..++++|..+|..++.....| +.=+|.|||.=| .|+ + ..+..++. + .++ .-.-|.
T Consensus 102 krELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL-~YK-------~-~ql~~~~~-~-----~~~---~~~~l~ 163 (195)
T PF12761_consen 102 KRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLL-DYK-------E-RQLRELEE-G-----RSK---SGKNLK 163 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHH-HHH-------H-HHHHhhhc-c-----CCC---CCCCHH
Confidence 467888888888888887773 344677766322 221 1 12223321 0 000 112366
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 921 EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 921 e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
-++++|. .+++++..|+.=+..++.|+.+|+
T Consensus 164 ~v~~Dl~-------~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 164 SVREDLD-------TIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777 888888889888888888888875
No 256
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=46.52 E-value=1.6e+02 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAEN 151 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~ 151 (1642)
+.|+.++..|+.++..+..++..|...+.....|.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666666666555544
No 257
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.46 E-value=4.3e+02 Score=28.89 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
.+++..+..++.-|+.++.++..|+.++.....-.+.|.--|
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666677777777666666665555555444
No 258
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.26 E-value=3.7e+02 Score=28.09 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhccC----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 850 LVSDLKTRLKDVEKKLLES----PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL~Er----s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
++.+.-.++.++....... ..+.=.||- ..+..+|.++..|..+- .++.+ |.+.|-.++-...|-.
T Consensus 86 ~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~---~~~~svk~~l~~R~~~~-~~~~~------a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 86 QLAEAFEKISELLEEQANQEEETLGEPLREYL---RYIESVKEALNRRDKKL-IEYQN------AEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHH------HHHHHHHHHHHHhccc
Confidence 4556666666666655554 223334554 45668888888887762 22222 2222221111111111
Q ss_pred H--HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 926 I--QAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960 (1642)
Q Consensus 926 L--qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~ 960 (1642)
. ....+|...++..+..++..++.+.++.+.....
T Consensus 156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1235666777777777777777777777666544
No 259
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=46.14 E-value=3.1e+02 Score=30.02 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE 888 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~ 888 (1642)
.....|.+.|....+ .+.++.||+.+|.+.+.=..
T Consensus 40 ~I~~~l~~Ae~~~~e-A~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 40 KIAGELADADTKKRE-AEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 333444444433222 56777889888887664433
No 260
>KOG0239|consensus
Probab=45.44 E-value=4.5e+02 Score=33.43 Aligned_cols=84 Identities=13% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDML 996 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL 996 (1642)
+..........+..++.+.|...+..|+..+..+.+....+..++..+....+.+..++...+..+- ++.
T Consensus 227 ~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~----------~~~ 296 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV----------EKK 296 (670)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 3334444444444455667777777777777777777777777777777777777666666655432 333
Q ss_pred HHHHHHhHHHHHHHh
Q psy16785 997 IKLIQDNYLLIIDLI 1011 (1642)
Q Consensus 997 ~~lLEENr~LL~dMt 1011 (1642)
.--++|+.|-+++.
T Consensus 297 -~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 297 -KEKEERRKLHNEIL 310 (670)
T ss_pred -HHHHHHHHHHHHHH
Confidence 33477888877764
No 261
>PF15294 Leu_zip: Leucine zipper
Probab=44.69 E-value=2.6e+02 Score=32.43 Aligned_cols=113 Identities=21% Similarity=0.186 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 41 LKDVEKKLLESPEEIKIEYEKQMTN-----YKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEK 115 (1642)
Q Consensus 41 L~EIE~SlaE~~~DLR~EYEKQL~N-----IR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK 115 (1642)
..||..-|..+...++.+-|..|.| .--||||+++=+.. |-.|.- =-.+||..-+-|--++.....=.
T Consensus 32 ~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~----~lkl~~---diselEn~eLLe~i~~~E~~~~~ 104 (278)
T PF15294_consen 32 SDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKW----YLKLQT---DISELENRELLEQIAEFEKQEFT 104 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH----HHHhcc---cHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456666666777888888887765 56799999874443 212111 00011111000000011111111
Q ss_pred hhh----------------------HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHH
Q psy16785 116 YKE----------------------NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 160 (1642)
Q Consensus 116 ~K~----------------------leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~ 160 (1642)
... +..-|..|..+++.+.+-+..++..|+.+..|+-.|++++.-
T Consensus 105 ~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 105 SSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred ccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 556677777788888888888888888888888888877643
No 262
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.54 E-value=3.5e+02 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=14.4
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSL 965 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tk 965 (1642)
....-|+.+++.++.++..+.....+++.++....
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333333
No 263
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=44.16 E-value=5.6e+02 Score=29.58 Aligned_cols=145 Identities=24% Similarity=0.306 Sum_probs=96.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHH
Q psy16785 845 SVILPLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIEKELAKNALLEAKLK 920 (1642)
Q Consensus 845 svrE~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~LR~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~ 920 (1642)
.-|.+-...+..-|.+|...+.+. ..-++.|.+.=-.=+..|-+=|+.|..- ..+-+.... .-.|+.++|.
T Consensus 103 ~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keL-----E~Ql~~AKl~ 177 (309)
T PF09728_consen 103 EKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKEL-----EVQLAEAKLE 177 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHH
Confidence 456666777888888998888877 4445555555444566677778877655 222222222 2234556677
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHH
Q psy16785 921 EIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIK 998 (1642)
Q Consensus 921 e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~ 998 (1642)
.....+..+.++.+.+.+.+..=-..+..+...-..|+.+|..-.+=-.+++.-++==|.+|..|= -++|++++
T Consensus 178 q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk----~Emekm~K 251 (309)
T PF09728_consen 178 QQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFK----KEMEKMSK 251 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHH
Confidence 777777777777777666222222277777788888888888888888888888888899998773 34555544
No 264
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.84 E-value=6.8e+02 Score=30.47 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=57.9
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
.+.+++.+.+..+.-.++.+..++.+..+.+..--.+...+++.+..++.|..+.= .+++.+.+.+++=..=|..+
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg----~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG----ASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888888778888999999999999887752 46677666666554444444
No 265
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.68 E-value=3.1e+02 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLT 145 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~ 145 (1642)
++..+..|++.++.+..++..++.++.
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 266
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.63 E-value=6e+02 Score=30.77 Aligned_cols=129 Identities=21% Similarity=0.226 Sum_probs=0.0
Q ss_pred eeehhhHHHHHhhhhhccccccccccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16785 2 VVFTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAE 81 (1642)
Q Consensus 2 ~~~~~~~~~~~~~~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa 81 (1642)
+||+|+|..-+---|| .+|.|||+---++ +.+.+|.=-|+- .-.|++|+--||||--++
T Consensus 44 f~f~~iss~gwff~i~--------------~re~qlk~aa~~l------lq~kirk~~e~~-eglr~i~es~~e~q~e~~ 102 (401)
T PF06785_consen 44 FVFSIISSLGWFFAIG--------------RREKQLKTAAGQL------LQTKIRKITEKD-EGLRKIRESVEERQQESE 102 (401)
T ss_pred eehHHHHHhHHHHHhh--------------HHHHHHHHHHHHH------HHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH
Q psy16785 82 LEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159 (1642)
Q Consensus 82 ~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~ 159 (1642)
-=+---+. .||.|.-+ ++-+..-..+..-||.-+..+..+.+-++-.+..+.-+|.+-..|...|+.|++
T Consensus 103 qL~~qnqk---L~nqL~~~-----~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 103 QLQSQNQK---LKNQLFHV-----REVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHhHHH---HHHHHHHH-----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
No 267
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.53 E-value=1.4e+02 Score=27.78 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 105 IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 146 (1642)
Q Consensus 105 ~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s 146 (1642)
|+++|..=..-+..++.+++.-++....+..+|..|+.++..
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444555566666666666666666666666655544
No 268
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=43.51 E-value=1.7e+02 Score=28.37 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHH
Q psy16785 938 KQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 982 (1642)
Q Consensus 938 e~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LF 982 (1642)
..+..++..+..+..|+++-..++...--.+..|.++|-.+|.+.
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~ 68 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQL 68 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666666666766666555543
No 269
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=43.39 E-value=4.9e+02 Score=29.06 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 121 KQILEMEKNIQLKDDEINNLNENLTS 146 (1642)
Q Consensus 121 eri~~LEkeVetk~dEi~~l~e~l~s 146 (1642)
..|+.|...++.+..|-..++.++..
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 270
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.99 E-value=5.3e+02 Score=33.28 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhH---HHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD---DEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~---dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
|..+|.+.|..=+--+.-|.+||+++-.|++.|..+. -|++.+ |-|.+.|..++.++|
T Consensus 81 lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~-------Khei~rl~Ee~~~l~ 141 (717)
T PF09730_consen 81 LREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGL-------KHEIKRLEEEIELLN 141 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 5577888887777778889999999999999998765 345544 445555555555554
No 271
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.88 E-value=28 Score=37.29 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy16785 904 MIEKELAKNALLEAKLK 920 (1642)
Q Consensus 904 ~i~ke~akn~Llqr~L~ 920 (1642)
+.|..+-+|+|||-+|+
T Consensus 8 klN~AIERnalLE~ELd 24 (166)
T PF04880_consen 8 KLNQAIERNALLESELD 24 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34555556666655553
No 272
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=41.74 E-value=2.1e+02 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE 967 (1642)
.|+..+..|+.+.+.+..++..|..++.....+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555554444433
No 273
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.53 E-value=2.6e+02 Score=34.99 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=19.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcc
Q psy16785 841 ATTRSVILPLVSDLKTRLKDVEKKLLE 867 (1642)
Q Consensus 841 ~~trsvrE~Qv~qLK~kL~qIE~sL~E 867 (1642)
..|...-+.|+.+++.+|.+.|..|.+
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~l~~ 292 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEKLNV 292 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888888877643
No 274
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.41 E-value=27 Score=27.66 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.7
Q ss_pred HHHhHhhHHHHHHHHHHHHHH
Q psy16785 1237 ELKHKRNIINDLKIDLEYVRE 1257 (1642)
Q Consensus 1237 eLQqKRrLLsELKeELEYCRe 1257 (1642)
++...|+=+++|+.+|.+|++
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999999999985
No 275
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.99 E-value=9 Score=46.95 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHHHHhHH-HHHHHHHHHHHHHHHhHhh
Q psy16785 877 EKQMTNYK-KLRELYEQRAAAAELEHKT 903 (1642)
Q Consensus 877 ERQL~NIR-~LR~LYEER~Rvaele~e~ 903 (1642)
+..+++|| .|..+=.-|.+|.+|+..|
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N 341 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDN 341 (713)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 2444444444554444444
No 276
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=40.84 E-value=2.7e+02 Score=30.22 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=77.7
Q ss_pred hhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHHHHHH
Q psy16785 1176 NHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYV 1255 (1642)
Q Consensus 1176 KsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeELEYC 1255 (1642)
++|+.|++.||.--.|.+..+.+..+.-.-.+--|.+.=.-|..|+++=.+ |...+. .|+.=+.-+..+..+|..-
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-y~kdK~---~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-YEKDKQ---SLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998888888888899999999999887665 333333 5556566666776666655
Q ss_pred HHHHHHHHhhhccCHHHHHHHHHHHH
Q psy16785 1256 REKWDLVKEKNEQNELDYKVLRKEFA 1281 (1642)
Q Consensus 1256 ReKW~~AR~KN~eSE~qwk~LR~EFA 1281 (1642)
+..-+...++...-+.+.+.|.+=|-
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677777777778777776664
No 277
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.80 E-value=8.5e+02 Score=30.72 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred cCchHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q psy16785 50 ESPEEIKIEYEKQMTNY--------KKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKY----K 117 (1642)
Q Consensus 50 E~~~DLR~EYEKQL~NI--------R~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~----K 117 (1642)
+.+.+|+.-+++|-+-| -+++.|||.=+.|-++--. -+-|+|.+. .|+.-.+|+ +
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~--------i~~l~ek~r-----~l~~D~nk~~~~~~ 319 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQK--------IKTLREKWR-----ALKSDSNKYENYVN 319 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-----HHhhhHHHHHHHHH
Confidence 34457777777765544 2578889887777655322 123444333 344444444 3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 193 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dM 193 (1642)
.|+..-++---.++.+..||+.+.+++...++-...|+.|+. ..+|.+.-+-.|-.|--.|-..+
T Consensus 320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~-----------kq~Is~e~fe~mn~Ere~L~reL 384 (622)
T COG5185 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR-----------KQGISTEQFELMNQEREKLTREL 384 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------hcCCCHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555556666643 56788888888888877766544
No 278
>KOG4466|consensus
Probab=40.77 E-value=3.6e+02 Score=31.60 Aligned_cols=48 Identities=31% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q psy16785 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKT 903 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~ 903 (1642)
.-|.||.++...|.+=-+.--.||-+++ +.|++=|-+|.++|++=++=
T Consensus 39 ~yk~kLa~Lq~~Leel~~g~~~eYl~~~---~~L~~~~kerl~~aely~e~ 86 (291)
T KOG4466|consen 39 MYKDKLAQLQAQLEELGQGTAPEYLKRV---KKLDESRKERLRVAELYREY 86 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777666666667888886 57788888888888875554
No 279
>KOG2891|consensus
Probab=40.66 E-value=4.7e+02 Score=30.88 Aligned_cols=46 Identities=35% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 57 IEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKL 102 (1642)
Q Consensus 57 ~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl 102 (1642)
+|.|++-.--+.--+--|||||+.+.++..+-.++++.+.++-+||
T Consensus 334 qeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkl 379 (445)
T KOG2891|consen 334 QELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKL 379 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444333333332334678999988888888888888888776665
No 280
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=40.56 E-value=7.4e+02 Score=29.95 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHhhhhh
Q psy16785 328 LTVTWGYLARLRLQIKCL 345 (1642)
Q Consensus 328 LtKTWh~VgkLrrQHrqL 345 (1642)
|+.-|=-=+|.|..-+|+
T Consensus 556 ~a~dW~~~ar~~le~~q~ 573 (582)
T PF09731_consen 556 LAADWLKEARRRLEVEQA 573 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888898888887766553
No 281
>KOG1656|consensus
Probab=40.49 E-value=6.1e+02 Score=28.94 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHH
Q psy16785 855 KTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK 911 (1642)
Q Consensus 855 K~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~ak 911 (1642)
=.||++-|+-|.....=|..--+.+++|+..--.--+-|..+.++.++..+++++++
T Consensus 23 I~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 23 IQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 357788888777766656555566655533222333777777888888877777655
No 282
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.14 E-value=2.5e+02 Score=35.71 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=12.0
Q ss_pred CcccchhcchhhHHHHhHH
Q psy16785 288 TNSTTTLDKSHIQKEITRV 306 (1642)
Q Consensus 288 SvS~TiLEK~sLvKEinRl 306 (1642)
+.+++.+-=..+.=||.++
T Consensus 72 ~~~q~L~~~~~~~f~v~~i 90 (717)
T PF10168_consen 72 SSYQKLLPSNPPLFEVHQI 90 (717)
T ss_pred cCcceeecCCCCceeEEEE
Confidence 4556655555566688877
No 283
>KOG0978|consensus
Probab=39.79 E-value=3.7e+02 Score=34.57 Aligned_cols=117 Identities=23% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCHHHHHhhchhHHHHHHHHhhhhcccccCCCcCcc-cccccc--ccccCCCccceEeeehhhhHHHHH----HHhhhhh
Q psy16785 1105 HIQKEIANNLPKVWRILIELLNTHQEQYENNDVNEN-FESCYK--NIKTNTGKTHQVISVSQTFIRLKH----LILEKNH 1177 (1642)
Q Consensus 1105 ~s~eEIa~NLPKVWRVLiELLS~Hqe~~e~~~~~e~-~~~CyK--sv~T~~Gpe~~ViSVSKTyIRLKD----LILEKKs 1177 (1642)
.....+..-+-++|+..++| . .+....+..+ ...||. .--...+-+...+.-+++|+.|.+ .+.+.+-
T Consensus 171 ~lq~~~~~~~~~~~~~~~~l-~----~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~~~~~~~~~lee~~~~~~~e~~~ 245 (698)
T KOG0978|consen 171 KLQLYSDEILRQLDRFRVEL-R----SLKEKVRSETFELRCLQYNEELQRKTMESDEAINSKKVIKLEEKLAQCVKEYEM 245 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH-H----HhhHHHHHHHHHHHHHHhhhhcccccchhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 45667777788899999998 3 2332222233 345643 111122222445555666777665 4566677
Q ss_pred hHHHHhhhhHHHH----------HHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhh
Q psy16785 1178 LTNQLAKLKTLNN----------HLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQ 1226 (1642)
Q Consensus 1178 L~KEtNRLKtLN~----------HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQ 1226 (1642)
|.++.+-.++=|. ||-+-|.+.+++|-.-..+|..|=.-+.+++.||.-
T Consensus 246 l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s 304 (698)
T KOG0978|consen 246 LRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSS 304 (698)
T ss_pred HHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 7777766666554 888889999999988888888998889999999863
No 284
>KOG0796|consensus
Probab=39.77 E-value=3.5e+02 Score=32.02 Aligned_cols=108 Identities=25% Similarity=0.209 Sum_probs=61.7
Q ss_pred hccC----chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy16785 865 LLES----PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEH---KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENK 937 (1642)
Q Consensus 865 L~Er----s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~---e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlE 937 (1642)
|+.| ...||..|++-= +...-+||.++-. .+++ +....-+.+|..|.+. .++.-.+.+..+++...|+
T Consensus 54 lg~C~kvHd~~lk~~Ye~~~---k~~~~~~E~d~~~-~l~~~v~d~~rri~~~kerL~e~-~ee~~~e~~~k~~~v~~l~ 128 (319)
T KOG0796|consen 54 LGPCPKVHDEALKADYERAS---KERDYGYEWDALE-ILERFVADVDRRIEKAKERLAET-VEERSEEAARKAEKVHELE 128 (319)
T ss_pred cCcccchhhHHHHHHHhhch---HhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHH
Confidence 5556 788999999744 7888888887432 2211 1111112233333322 3333344444467788888
Q ss_pred HHHHHHHHhhhhhH------------HHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHH
Q psy16785 938 KQILEMEKNIQLKD------------DEINNLNENLTSSLAENHILNSQMTLVNNLFS 983 (1642)
Q Consensus 938 e~i~~Le~dve~~~------------dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFS 983 (1642)
+.|..+..+++.+. .+.+.|++ ++......+|...|..++
T Consensus 129 e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~------~e~e~~~~~~~~~~~~~~ 180 (319)
T KOG0796|consen 129 EKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKA------KEKEEAEESYNTTMPGAS 180 (319)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH------HHHHHHHHHHccCcchhh
Confidence 88888888877765 33444443 355566666666555553
No 285
>KOG0810|consensus
Probab=39.64 E-value=3.2e+02 Score=31.73 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHhhcCch----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-H
Q psy16785 35 SDLKTRLKDVEKKLLESPE----------------EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE-KELAKN-A 96 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~~----------------DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR-le~~Kn-d 96 (1642)
..+|.||+.+|+.....+. -+.+=+...|..++.++.-|-++.+ +.++| +.-++. .
T Consensus 92 ~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k------~~i~Rql~i~~~~~ 165 (297)
T KOG0810|consen 92 RKIKTKLKALEKENEADETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYK------ERIQRQLFIVGGEE 165 (297)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhCCCc
Confidence 4568999999999884441 4556788888889999888877754 33334 333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHH
Q psy16785 97 LLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 166 (1642)
Q Consensus 97 LeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFS 166 (1642)
..+. +|..-++. -+.+.+.+++..+...+.+.|+..++- -.|.+.|...|.=+++||=
T Consensus 166 ~~de-------~ie~~ie~-g~~~~f~~~~i~~~~~~~~~l~Eiq~R----h~~ik~LEksi~ELhqlFl 223 (297)
T KOG0810|consen 166 TTDE-------EIEEMIES-GGSEVFTQKAIQDRGQAKQTLAEIQER----HDEIKKLEKSIRELHQLFL 223 (297)
T ss_pred CChH-------HHHHHHHC-CChHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3322 22223333 555556666555555555555444433 3344455555666666663
No 286
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.59 E-value=2.7e+02 Score=29.05 Aligned_cols=66 Identities=9% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
++|+..-..|.+- -+.|..+|+.+..+++...+-.+.++++....+.+.-.+...+..|+..+..|
T Consensus 50 kql~~vs~~l~~t---KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 50 KQLEQVSESLSST---KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5566555555533 24577888888888888888888888888888888888888888888887764
No 287
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=39.42 E-value=4.6e+02 Score=27.46 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK 68 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~ 68 (1642)
|....+..|.+.++...+. ..+..+|+.+|.+.|.
T Consensus 54 R~~~I~~~l~~Ae~~~~ea-~~~~~e~e~~L~~Ar~ 88 (167)
T PRK08475 54 RINKISKRLEEIQEKLKES-KEKKEDALKKLEEAKE 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4444555555555544332 3678899999887764
No 288
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.25 E-value=4.1e+02 Score=26.62 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
.+.++.+|+.++..+.+|++.|+.++..-..|+..|
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999888877777654
No 289
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.14 E-value=7.2e+02 Score=29.40 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
|..+|+.+.++...+++..-.|-.+|..|+..+...-.|-+.|...|..++.=-+.|+++
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777777777777777666666666555
No 290
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.70 E-value=2e+02 Score=29.67 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=83.6
Q ss_pred cCCHHHHHhhchh------HHHHHHHHhhhhcccccCCCcCccccccc---ccc-ccCCCccceEeeehhhhHHHHHHHh
Q psy16785 1104 SHIQKEIANNLPK------VWRILIELLNTHQEQYENNDVNENFESCY---KNI-KTNTGKTHQVISVSQTFIRLKHLIL 1173 (1642)
Q Consensus 1104 ~~s~eEIa~NLPK------VWRVLiELLS~Hqe~~e~~~~~e~~~~Cy---Ksv-~T~~Gpe~~ViSVSKTyIRLKDLIL 1173 (1642)
..++.+|++||-+ |=|.|=.|.....+..-.. +. ...| ... ..+++ --|.+|--
T Consensus 16 Pys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~---GK-qkiY~~~Q~~~~~~s~------------eel~~ld~ 79 (169)
T PF07106_consen 16 PYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEY---GK-QKIYFANQDELEVPSP------------EELAELDA 79 (169)
T ss_pred CCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeee---cc-eEEEeeCccccCCCCc------------hhHHHHHH
Confidence 3588999999954 6677878877333322111 11 1122 111 11122 24677888
Q ss_pred hhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHHHH
Q psy16785 1174 EKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLE 1253 (1642)
Q Consensus 1174 EKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeELE 1253 (1642)
+-..|..|+..|+.-+.+|+..|....+.+++.-+ +=.+.+-+.=+..|...|+
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el--------------------------~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEEL--------------------------REEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--------------------------HHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988777664321 1111222222444555555
Q ss_pred HHHHHHHHHHh-hhccCHHHHHHHHHHHHhhhh
Q psy16785 1254 YVREKWDLVKE-KNEQNELDYKVLRKEFALRRL 1285 (1642)
Q Consensus 1254 YCReKW~~AR~-KN~eSE~qwk~LR~EFA~RK~ 1285 (1642)
--|..|..+-. .-..-+..|+.|++++..||.
T Consensus 134 ~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 134 KLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444211 112345789999999999985
No 291
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.58 E-value=4.6e+02 Score=27.06 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 111 AQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 111 aE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
.+.+..+....++..|+.+++.++..+..+-+=|++-..+...|++-|.=|-.+|-.
T Consensus 58 ~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 58 EENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677788888888888888888888888888888888887777666654
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=38.54 E-value=5e+02 Score=32.52 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=13.0
Q ss_pred hhHHHHhHHhhhhhhcCCCcc
Q psy16785 298 HIQKEITRVISNSLISGLSPS 318 (1642)
Q Consensus 298 sLvKEinRlLNsHL~sRL~eQ 318 (1642)
+..-|.-|.|-+.|...+...
T Consensus 504 s~~~Ea~r~lrt~l~~~~~~~ 524 (719)
T PRK11519 504 DLAIEAIRSLRTSLHFAMMQA 524 (719)
T ss_pred CHHHHHHHHHHHHhhhhccCC
Confidence 445677777777776655443
No 293
>KOG0612|consensus
Probab=38.50 E-value=1.3e+03 Score=32.03 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=13.4
Q ss_pred ccccCCCCCCCCCccccce
Q psy16785 431 KANLNEPSPCETSDEKDIV 449 (1642)
Q Consensus 431 ~~~~~~~~~c~~~de~~~~ 449 (1642)
-+.|||-|.|---|..--|
T Consensus 213 HikLADFGsClkm~~dG~V 231 (1317)
T KOG0612|consen 213 HIKLADFGSCLKMDADGTV 231 (1317)
T ss_pred cEeeccchhHHhcCCCCcE
Confidence 4679999999866654333
No 294
>KOG0946|consensus
Probab=38.12 E-value=3.3e+02 Score=35.76 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhC---CCCCHH
Q psy16785 101 KLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN---PMINLD 177 (1642)
Q Consensus 101 Kl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg---~~~DlD 177 (1642)
|+|.+-.+++.+++..|. ...+|.-+.+.++.++.+..+..++++.+...|+.|++.|+.=--+++-| .+..-.
T Consensus 661 kyK~lI~~lD~~~e~lkQ---~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~e 737 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQ---MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNE 737 (970)
T ss_pred HHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChH
Confidence 344433344444443332 33445555555566666666666677777778888888888777777776 556666
Q ss_pred HHHHHHHHhHHHHHH
Q psy16785 178 MLIKLIQDNYLLIID 192 (1642)
Q Consensus 178 rLi~mLEENr~LL~d 192 (1642)
-|...+.||-.|.++
T Consensus 738 el~a~~~e~k~l~~~ 752 (970)
T KOG0946|consen 738 ELNAALSENKKLEND 752 (970)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777766643
No 295
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.06 E-value=6.6e+02 Score=34.07 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
+++.....++..-.+....+++.+..++...+.+..+++.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555555555556666555555555555544
No 296
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.02 E-value=8.5e+02 Score=29.92 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHH-----HHhhcC-CCCChHHHHHHHHH-hHHHH
Q psy16785 937 KKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF-----SNMLIN-PMINLDMLIKLIQD-NYLLI 1007 (1642)
Q Consensus 937 Ee~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LF-----SqmLLG-~~iDLDrL~~lLEE-Nr~LL 1007 (1642)
...+.++.+++..++..|+.++.+- .+..+.|..++..++.+= --++.+ .-.+-+|++.++.. |+.++
T Consensus 86 ~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~ 160 (420)
T COG4942 86 ADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARA 160 (420)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHH
Confidence 3344444444444455555555444 566777888877776531 112222 33667888876654 44433
No 297
>KOG0962|consensus
Probab=37.95 E-value=8.5e+02 Score=33.53 Aligned_cols=125 Identities=26% Similarity=0.345 Sum_probs=74.8
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhccC---chHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHhHhhhHHHH
Q psy16785 838 NILATTRSVILPLVSDLKTRLKDVEKKLLES---PEEIKIEYE------KQMTNYKKLRELYEQRAAAAELEHKTMIEKE 908 (1642)
Q Consensus 838 ~il~~trsvrE~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYE------RQL~NIR~LR~LYEER~Rvaele~e~~i~ke 908 (1642)
+++-+...+-+.-..+++..=++||...++- .++.+..|| +-+.=.+.+|..||..+.. .|..+
T Consensus 781 ~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~-------~~~~~ 853 (1294)
T KOG0962|consen 781 ETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKE-------VIEQE 853 (1294)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 3444556777788888888888888776665 344444444 4444455666666655433 12222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 909 LAKNALLE--AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 909 ~akn~Llq--r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
..-|.|.. -.+...+..+...+.+-.++++.+.++.+++.....++.-+.+..+.-+-+..
T Consensus 854 ~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~ 916 (1294)
T KOG0962|consen 854 REISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE 916 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH
Confidence 22222221 12234445556667777788888888888888888777777776665544433
No 298
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=37.75 E-value=1.6e+02 Score=30.71 Aligned_cols=26 Identities=38% Similarity=0.377 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 58 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 89 (1642)
Q Consensus 58 EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR 89 (1642)
+|-+.|.|||.|| +.+.++..+.|..
T Consensus 3 ~~lk~l~niR~lr------a~~re~~~e~Lee 28 (135)
T PRK10947 3 EALKILNNIRTLR------AQARECTLETLEE 28 (135)
T ss_pred HHHHHHHhHHHHH------HHHHHCCHHHHHH
Confidence 4568899999995 4455565555443
No 299
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=37.17 E-value=52 Score=35.33 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 938 KQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 938 e~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
|++.-||.+| +|.++|+.++.-.+.|.|+|+.|+.|
T Consensus 14 ERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V 49 (166)
T PF04880_consen 14 ERNALLESEL----DEKENLREEVQRLKDELRDLKQELIV 49 (166)
T ss_dssp HHHHHHHHHH----HHHHHHHHCH----------------
T ss_pred HHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 78899999999999999999999844
No 300
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=36.60 E-value=2.3e+02 Score=24.58 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=34.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 925 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 925 eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
.++..+.+.+.++..+......++...+.-..| ...+ -++...++..+.-||.-|..
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~--~~~~~~i~~~~~~l~~~w~~ 91 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSG--PEDSDEIQEKLEELNQRWEA 91 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcC--CCcHHHHHHHHHHHHHHHHH
Confidence 355556667777777777777777666666666 3322 34445666666666665544
No 301
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=36.53 E-value=4.1e+02 Score=29.79 Aligned_cols=6 Identities=50% Similarity=0.473 Sum_probs=2.9
Q ss_pred hhhchh
Q psy16785 703 ECTSAV 708 (1642)
Q Consensus 703 ~~~~~~ 708 (1642)
+|..||
T Consensus 40 e~~~A~ 45 (297)
T PF02841_consen 40 ENRAAV 45 (297)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454444
No 302
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.37 E-value=4e+02 Score=34.06 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcC
Q psy16785 38 KTRLKDVEKKLLES 51 (1642)
Q Consensus 38 K~KL~EIE~SlaE~ 51 (1642)
|.||..||..+.+.
T Consensus 358 k~kl~~vEr~~~~~ 371 (652)
T COG2433 358 KPKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHHhcccc
Confidence 68888888888755
No 303
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.24 E-value=1.4e+02 Score=29.09 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 980 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~ 980 (1642)
.++++|..||..+.-+..-|+-|+..+.+..-....++.+|.++=+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999976533
No 304
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.15 E-value=9.4e+02 Score=29.88 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 852 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY 890 (1642)
Q Consensus 852 ~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LY 890 (1642)
.++..++......+. +...+..+++..-.-++.++..+
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 76 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSIN 76 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554 44556666665555555555543
No 305
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.84 E-value=1.2e+02 Score=31.51 Aligned_cols=53 Identities=8% Similarity=0.205 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 116 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 116 ~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
.+.|..||+.|-..++...+..+.++++.+..+.+-..+...+..|+..++.|
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888888888888888888888888888877764
No 306
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.79 E-value=1.8e+02 Score=32.40 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 988 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG 988 (1642)
+..+|.+|..+.+..++-+..|.++.++.+.+..| -..+-.|.|+.+..+..++..|.+.-..
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E-------r~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE-------RMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555444433333 3334444445555555555555554444
No 307
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=35.72 E-value=5.8e+02 Score=28.38 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
.+++..+.+++......+..+..+..+.... ..+++...+.++...+++...++.+
T Consensus 145 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 145 NDLENARSSRDQAQATLKSAQDKLSQYREGN--RPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443221 2345555555555555544444333
No 308
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.47 E-value=3.2e+02 Score=27.98 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHH
Q psy16785 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL 957 (1642)
Q Consensus 907 ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l 957 (1642)
.|-||++-|...|..+-..|..-+.....|.=+++.|.+.|+.+++|+...
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666677777777766666643
No 309
>KOG0796|consensus
Probab=35.13 E-value=5.1e+02 Score=30.82 Aligned_cols=78 Identities=26% Similarity=0.242 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy16785 53 EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE--KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNI 130 (1642)
Q Consensus 53 ~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR--le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeV 130 (1642)
..||..||+-= +...-+||.++-..=...-+.+. .+.+|.-|.+. ..+.-++.+..+++-..|++.|..|.+++
T Consensus 63 ~~lk~~Ye~~~---k~~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~-~ee~~~e~~~k~~~v~~l~e~I~~~l~~~ 138 (319)
T KOG0796|consen 63 EALKADYERAS---KERDYGYEWDALEILERFVADVDRRIEKAKERLAET-VEERSEEAARKAEKVHELEEKIGKLLEKA 138 (319)
T ss_pred HHHHHHHhhch---HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999844 88888999884332222222222 23333333333 21222222223344555666666666555
Q ss_pred hhhH
Q psy16785 131 QLKD 134 (1642)
Q Consensus 131 etk~ 134 (1642)
+.+.
T Consensus 139 E~LG 142 (319)
T KOG0796|consen 139 EELG 142 (319)
T ss_pred HHHh
Confidence 5443
No 310
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.09 E-value=2.4e+02 Score=33.39 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 854 LK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
++.....+..++..|- + + .++-.|-.||++|..+
T Consensus 7 ir~n~~~v~~~l~~R~--~------~-~~vd~i~~ld~~~r~l 40 (425)
T PRK05431 7 IRENPEAVKEALAKRG--F------P-LDVDELLELDEERREL 40 (425)
T ss_pred HHhCHHHHHHHHHhcC--C------c-ccHHHHHHHHHHHHHH
Confidence 3445566677777772 1 1 2577788888887655
No 311
>PF15294 Leu_zip: Leucine zipper
Probab=34.78 E-value=8e+02 Score=28.69 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
+...|.+|..+.+.+.+-+..++..++.+..|+..|+.++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~ 170 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLK 170 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777776653
No 312
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=34.69 E-value=6.3e+02 Score=27.46 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=13.0
Q ss_pred chHHHHHHHHHHHhHHH
Q psy16785 869 PEEIKIEYEKQMTNYKK 885 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~ 885 (1642)
.+.+..||+++|.+.+.
T Consensus 98 A~~~l~e~e~~L~~A~~ 114 (205)
T PRK06231 98 AQQLLENAKQRHENALA 114 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777888888888764
No 313
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.66 E-value=7.2e+02 Score=31.97 Aligned_cols=11 Identities=9% Similarity=-0.224 Sum_probs=5.6
Q ss_pred ccccCCHHHHH
Q psy16785 1101 LDKSHIQKEIA 1111 (1642)
Q Consensus 1101 ~~k~~s~eEIa 1111 (1642)
++-....+|-.
T Consensus 708 DL~G~~~eeA~ 718 (782)
T PRK00409 708 DLRGMRYEEAL 718 (782)
T ss_pred ECCCCCHHHHH
Confidence 33355666644
No 314
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.60 E-value=6.6e+02 Score=32.21 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNE 142 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e 142 (1642)
.++.| |.+||.+++..+..||++..-.+.|+.++-+
T Consensus 438 ~~~VQ-e~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ 473 (758)
T COG4694 438 KSDVQ-EYNKYCGLEKKINNLEKEIKNNQEEVKKLSN 473 (758)
T ss_pred HHHHH-HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Confidence 33444 6789999999999999998888888877443
No 315
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=34.59 E-value=5e+02 Score=29.13 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16785 54 EIKIEYEKQMTNYKKLRELYEQRAAAAE 81 (1642)
Q Consensus 54 DLR~EYEKQL~NIR~LRqLYEERaRaAa 81 (1642)
.++.+++....+.+.+.+.++.+.+.-+
T Consensus 215 ~~e~e~~~l~e~~~~~~~~le~~~~~~e 242 (297)
T PF02841_consen 215 AAEKEKEKLEEKQKEQEQMLEQQERSYE 242 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 316
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.58 E-value=4.1e+02 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
++++++..++.++..+......+++++......-+.+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 317
>KOG1853|consensus
Probab=34.39 E-value=8.3e+02 Score=28.76 Aligned_cols=31 Identities=13% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEIN 138 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~ 138 (1642)
-|..++-..+..+++..+--.+++.+||-|+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4444555555555555555555555555444
No 318
>KOG2891|consensus
Probab=34.31 E-value=4.4e+02 Score=31.11 Aligned_cols=37 Identities=38% Similarity=0.307 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHH
Q psy16785 875 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK 911 (1642)
Q Consensus 875 EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~ak 911 (1642)
|.|++-+--+.--.--|||+|+.+-++...-+-++|.
T Consensus 335 eleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~ 371 (445)
T KOG2891|consen 335 ELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERAR 371 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3343333333333334667777665555544444443
No 319
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=34.27 E-value=5.7e+02 Score=30.68 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKL 886 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~L 886 (1642)
+..-...+..|.+.|. .....+.++.+|+++|.+.+.=
T Consensus 31 ~~R~~~I~~~L~eAe~-a~~ea~~~~~~~e~~L~~Ak~e 68 (445)
T PRK13428 31 AARQDTVRQQLAESAT-AADRLAEADQAHTKAVEDAKAE 68 (445)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666664 3455888999999999888763
No 320
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.98 E-value=4.4e+02 Score=25.48 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 912 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 912 n~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
..|+++-.++....|...+ +.++..+..+++.++.+..++..++.++.
T Consensus 54 ~vfv~~~~~ea~~~Le~~~---e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 54 NVLVKQEKEEARTELKERL---ETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred hHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556555555555444332 24555555555555555555555555544
No 321
>KOG4572|consensus
Probab=33.96 E-value=3.9e+02 Score=35.21 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=35.3
Q ss_pred HhHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 899 LEHKTMIEKELAK-NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 899 le~e~~i~ke~ak-n~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
+|-.++++|++|. -.|.+.-|+.+++++++.++|. +|...-.+-..++.+..+++.+..++.++-|+.+
T Consensus 964 aE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke--fE~~mrdhrselEe~kKe~eaiineiee~eaeIi 1033 (1424)
T KOG4572|consen 964 AEIDAELEKEFAELIELEQKALECKEDEAFARHEKE--FEIEMRDHRSELEEKKKELEAIINEIEELEAEII 1033 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455443 2455666888888888877764 3333333333344444444444444444444433
No 322
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=33.64 E-value=1e+02 Score=38.09 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHhhcC---------CCCChHHHHHHHHHhHHHHHHHhhc
Q psy16785 981 LFSNMLIN---------PMINLDMLIKLIQDNYLLIIDLINN 1013 (1642)
Q Consensus 981 LFSqmLLG---------~~iDLDrL~~lLEENr~LL~dMt~~ 1013 (1642)
-++++|.| ....+.--++-+|-|.+||.+|+++
T Consensus 658 ~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~ka 699 (790)
T PF07794_consen 658 AYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKA 699 (790)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 57888888 5566777788999999999999988
No 323
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.53 E-value=1.2e+03 Score=30.17 Aligned_cols=149 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 35 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLE 114 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~e 114 (1642)
.+...+|.+++..+.+....+-. |.+++.++..+++-+..-...-..-.+.+--+.....+|.+.+. .+...++
T Consensus 287 ~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-----~~~~~~~ 360 (908)
T COG0419 287 EEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN-----ELAKLLE 360 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q ss_pred Hhhh-HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHH
Q psy16785 115 KYKE-NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 193 (1642)
Q Consensus 115 K~K~-leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dM 193 (1642)
...+ +..++..+++.+....+-+.++...+.....+...+.+.+.-+.+-+....- .+..+.+-|++....+..+
T Consensus 361 ~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 361 ERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK----ELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
No 324
>KOG0577|consensus
Probab=33.48 E-value=5.5e+02 Score=33.33 Aligned_cols=108 Identities=30% Similarity=0.352 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhh----cCchHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 38 KTRLKDVEKKLL----ESPEEIKIEYEKQMTNYK--------KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEI 105 (1642)
Q Consensus 38 K~KL~EIE~Sla----E~~~DLR~EYEKQL~NIR--------~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~ 105 (1642)
.+.|..+|+.+. +....|-+|||-|..|+- .=-..-|-|++++.++-..++.-+..++. +++
T Consensus 500 qkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khqa~~ekeak~~~a~EkKfqq~i~~qqk------k~l 573 (948)
T KOG0577|consen 500 QKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQAIGEKEAKAASAEEKKFQQHILGQQK------KEL 573 (948)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhH------HHH
Confidence 366888888887 334488899999999973 22346788888888888887775555544 222
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH-hhh----hhHHHHHHHHHHhhhcHHHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEK-NIQ----LKDDEINNLNENLTSSLAEN 151 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEk-eVe----tk~dEi~~l~e~l~s~~aE~ 151 (1642)
.--+.++...||-.++++.+=.. +.. ++.+-+..-++++..|++|.
T Consensus 574 ~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaee 624 (948)
T KOG0577|consen 574 KAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEE 624 (948)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 23556666667777776654332 333 45556667788888887753
No 325
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=33.47 E-value=1e+03 Score=31.02 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=73.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhc------cCchHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHhHhhhHHHHH
Q psy16785 839 ILATTRSVILPLVSDLKTRLKDVEKKLL------ESPEEIKIEYEKQMTNYKKLRELYEQ---RAAAAELEHKTMIEKEL 909 (1642)
Q Consensus 839 il~~trsvrE~Qv~qLK~kL~qIE~sL~------Ers~dLr~EYERQL~NIR~LR~LYEE---R~Rvaele~e~~i~ke~ 909 (1642)
.+-++...++.....|..-|+.+|+-+. +.+..-|.+-++||+-.+.-....-- |+++---..+.+|..--
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555444444443221 23444477777888887765554432 22221111111111111
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 910 AKNA-------LLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 910 akn~-------Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
++.. =+..-|+-.|..|.+....+..|-..+..|...++.++.-+++....+...++|...++.+|.=.
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l 383 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL 383 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11344555666666666666666666666766777777777777777777777777766666543
No 326
>KOG1899|consensus
Probab=33.34 E-value=1.2e+03 Score=30.34 Aligned_cols=120 Identities=22% Similarity=0.229 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHH---HhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 35 SDLKTRLKDVEK---KLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQA 111 (1642)
Q Consensus 35 aQLK~KL~EIE~---SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqa 111 (1642)
..+..||.-+|. ||..--.=|-..-+-|=.-||-|--+.|+-+.---+.-|-||+.-+..-.||-+|+ +|-|
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKl-----DLma 181 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKL-----DLMA 181 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHh-----HHHH
Confidence 344555555553 33222224556677888889999988887665444445556663334467777777 5655
Q ss_pred HHHHhhhHHHHHHHHHHhh------------------hhhHHH----HHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 112 QLEKYKENKKQILEMEKNI------------------QLKDDE----INNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 112 E~eK~K~leeri~~LEkeV------------------etk~dE----i~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
|. .+|+-+...||++- +.+..| -.+-.-++.++++|+-.|++|+..-|
T Consensus 182 ev---SeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~ 251 (861)
T KOG1899|consen 182 EV---SELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKN 251 (861)
T ss_pred HH---HHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhh
Confidence 54 34555555555443 222222 22233456677888888887776544
No 327
>KOG0243|consensus
Probab=33.29 E-value=1.4e+03 Score=31.04 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh-hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHH
Q psy16785 72 LYEQRAAAAELEHKTMIEKELAKNALLEAKLK-EIQEEIQAQLEKYK-ENKKQILEMEKNIQLKDDEINNLNENLTSSLA 149 (1642)
Q Consensus 72 LYEERaRaAa~e~e~LiRle~~KndLeEaKl~-e~~~elqaE~eK~K-~leeri~~LEkeVetk~dEi~~l~e~l~s~~a 149 (1642)
|+++-...-+--+.....++..+..+.+++.. ...+++...++++- .+..+.-+|...++.+.+.+..+-+++.....
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33433333333333334455555555544433 22334444444442 34455555666666666666666666654432
Q ss_pred --------HHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHHH
Q psy16785 150 --------ENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLI 194 (1642)
Q Consensus 150 --------E~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dMt 194 (1642)
.......-+..|+.||-.+-.+...-+..|..|+..+..+++...
T Consensus 561 ~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~ 613 (1041)
T KOG0243|consen 561 LDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKS 613 (1041)
T ss_pred cccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhc
Confidence 122223334456666666666667777888888888866665553
No 328
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=9.4e+02 Score=32.16 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhcc
Q psy16785 846 VILPLVSDLKTRLKDVEKKLLE 867 (1642)
Q Consensus 846 vrE~Qv~qLK~kL~qIE~sL~E 867 (1642)
-|-+|+||++.+|+|..+.+.+
T Consensus 178 GrnP~iNq~l~klkq~~~ei~e 199 (984)
T COG4717 178 GRNPQINQLLEKLKQERNEIDE 199 (984)
T ss_pred CCChhHHHHHHHHHHHHHHHHH
Confidence 3567899999999988777754
No 329
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.88 E-value=6.9e+02 Score=27.33 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHHhHHH
Q psy16785 869 PEEIKIEYEKQMTNYKK 885 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~ 885 (1642)
.+.+..+|+++|.+.|.
T Consensus 103 Ae~~~~~ye~~L~~Ar~ 119 (204)
T PRK09174 103 ADAAVAAYEQELAQARA 119 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666677777666553
No 330
>PRK00106 hypothetical protein; Provisional
Probab=32.84 E-value=1.1e+03 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=17.8
Q ss_pred hhhhhHHHHhhccchhHHHHHHHhhccccccccccc
Q psy16785 221 QNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVES 256 (1642)
Q Consensus 221 E~~k~~eeIi~NLPKVWkvLmELLsH~~~~~~~~es 256 (1642)
+.++.|+.|+.. -|-+.-.+..+...++.|+..+
T Consensus 200 ~a~~~a~~ii~~--aiqr~a~~~~~e~tvs~v~lp~ 233 (535)
T PRK00106 200 RSDKMAKDLLAQ--AMQRLAGEYVTEQTITTVHLPD 233 (535)
T ss_pred HHHHHHHHHHHH--HHHHhcchhhhhheeeeEEcCC
Confidence 355567776642 3445555555555555544433
No 331
>PRK10869 recombination and repair protein; Provisional
Probab=32.73 E-value=1e+03 Score=29.31 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH
Q psy16785 53 EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK---NALLEAKLKEI-QEEIQAQLEKYKENKKQILEMEK 128 (1642)
Q Consensus 53 ~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~K---ndLeEaKl~e~-~~elqaE~eK~K~leeri~~LEk 128 (1642)
..++.+|..-...++.++.-+++-... +.+...+++.++ +.++++.++.- .++|..+..+-++.++-.+.+..
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~---~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~ 229 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQ---SQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQN 229 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888887777766653322 222222222222 22333332211 24566777666666554444443
Q ss_pred hhhhhHH--------HHHHHHHHhhh----------cHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHH
Q psy16785 129 NIQLKDD--------EINNLNENLTS----------SLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLI 190 (1642)
Q Consensus 129 eVetk~d--------Ei~~l~e~l~s----------~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL 190 (1642)
=.+.+.+ .|......+.. .......+..++.-+..-++..+-+=..|..+|. -+++=..+|
T Consensus 230 ~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~-~ie~Rl~~l 308 (553)
T PRK10869 230 ALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLA-ELEQRLSKQ 308 (553)
T ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHH
Confidence 3333322 12222222211 1111222222222222233333333466666654 456777899
Q ss_pred HHHHhhcCC
Q psy16785 191 IDLINNHEI 199 (1642)
Q Consensus 191 ~dMt~nE~~ 199 (1642)
++|..+.|.
T Consensus 309 ~~L~rKyg~ 317 (553)
T PRK10869 309 ISLARKHHV 317 (553)
T ss_pred HHHHHHhCC
Confidence 999999984
No 332
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.41 E-value=6.1e+02 Score=26.62 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16785 35 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAEL---EHKTMIE-KELAKNALLEAKLKEIQEEIQ 110 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~---e~e~LiR-le~~KndLeEaKl~e~~~elq 110 (1642)
...+++|.+|++.|...+..=+-=| .-|+.+...|-.|+..+.= -+-.... ++.+---..|.++-.+-.-|+
T Consensus 32 ~~v~~~i~~L~~~L~~~~n~t~~~~----~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~ 107 (146)
T PF08702_consen 32 RDVDKDIQELENLLDQISNSTSEAF----EYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIR 107 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 4557788888887775544222222 2366777778888766431 1111000 111111223344444444555
Q ss_pred HHHHHhhhHHHHHHHHHHhhhh
Q psy16785 111 AQLEKYKENKKQILEMEKNIQL 132 (1642)
Q Consensus 111 aE~eK~K~leeri~~LEkeVet 132 (1642)
.=++-..++..+|++||.+|..
T Consensus 108 ~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 108 VLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666554
No 333
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=32.30 E-value=1e+03 Score=29.03 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=21.0
Q ss_pred hHHHHHHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchh
Q psy16785 1165 FIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNT 1205 (1642)
Q Consensus 1165 yIRLKDLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~ 1205 (1642)
=+|+++-+-|+.-|..++...- ++ ++-++.|+||..
T Consensus 361 ~~k~~~ke~E~q~lr~~l~~~~--~~---s~~~elE~rl~~ 396 (511)
T PF09787_consen 361 QLKLKEKESEIQKLRNQLSARA--SS---SSWNELESRLTQ 396 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cc---CCcHhHHHHHhh
Confidence 4677777777777777665533 11 133455566554
No 334
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.27 E-value=7.5e+02 Score=27.56 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHhhcCc
Q psy16785 35 SDLKTRLKDVEKKLLESP 52 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~ 52 (1642)
.+++.+|.+.+..+....
T Consensus 77 ~~~~~~l~~~~a~l~~~~ 94 (331)
T PRK03598 77 APYENALMQAKANVSVAQ 94 (331)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666555554333
No 335
>KOG3564|consensus
Probab=32.22 E-value=2.1e+02 Score=35.66 Aligned_cols=62 Identities=24% Similarity=0.377 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHH
Q psy16785 76 RAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI 137 (1642)
Q Consensus 76 RaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi 137 (1642)
|-.+.-.++++++-+-+-|-.-++.|++-.+.-+-+|++..+.+|-....||+.++...|-+
T Consensus 46 r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 46 RTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444457788888888888888899999999999999999988888888888877766644
No 336
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=32.10 E-value=1.5e+03 Score=31.11 Aligned_cols=327 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHhHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH------HHHHhhhhhHHHHHHHH------
Q psy16785 894 AAAAELEHKT---MIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQIL------EMEKNIQLKDDEINNLN------ 958 (1642)
Q Consensus 894 ~Rvaele~e~---~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~------~Le~dve~~~dEi~~l~------ 958 (1642)
+++|.++-++ ||+|..+-.+|.|=+-+..|+.+...+.-.+++-.+-+ +|...++....+++.|+
T Consensus 1010 A~~AK~QMDaIKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TP 1089 (1439)
T PF12252_consen 1010 ARQAKAQMDAIKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTP 1089 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhccc
Q ss_pred ----------------------------------HHhhhcHHHHHHhHHHHhHHHHHHHHhhcC----CCCChHHHHHHH
Q psy16785 959 ----------------------------------ENLTSSLAENHILNSQMTLVNNLFSNMLIN----PMINLDMLIKLI 1000 (1642)
Q Consensus 959 ----------------------------------e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG----~~iDLDrL~~lL 1000 (1642)
+.+.--.+...-|+.++.++-+==..|-.| .--||.+|.+-|
T Consensus 1090 Vvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qL 1169 (1439)
T PF12252_consen 1090 VVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQL 1169 (1439)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHH
Q ss_pred HHhHHHHHHHhhccccccchhhhhhhhhhcchhhhhhhhhHHHhhhhcccCCchhhhHHHhhccCCCCCccccccccccc
Q psy16785 1001 QDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHA 1080 (1642)
Q Consensus 1001 EENr~LL~dMt~~~einet~s~l~d~A~kE~s~tlaa~LPKlL~~~e~~~~~~~~dLVeqVe~~~~s~s~ds~~~q~dd~ 1080 (1642)
+.=+.=|.+- .|+.+++.+ +.+....||-| .++=..+.+--.+.-.-.-
T Consensus 1170 q~~~~kL~dA-----------yl~eitKqI--saLe~e~PKnl-----------tdvK~missf~d~laeiE~------- 1218 (1439)
T PF12252_consen 1170 QVIHTKLYDA-----------YLVEITKQI--SALEKEKPKNL-----------TDVKSMISSFNDRLAEIEF------- 1218 (1439)
T ss_pred HHhhhhhHHH-----------HHHHHHHHH--HHHHhhCCCch-----------hhHHHHHHHHHhhhhHHHH-------
Q ss_pred ccCCCCCCCCCccCCCccccccc-----cCCHHHHHhhchhHHHHHHHHhhhhcccccCCCcCccccccccccccCCCcc
Q psy16785 1081 ETNTNEESPADQDETNSTTTLDK-----SHIQKEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKT 1155 (1642)
Q Consensus 1081 ~~ns~~e~~~~~~e~n~~~~~~k-----~~s~eEIa~NLPKVWRVLiELLS~Hqe~~e~~~~~e~~~~CyKsv~T~~Gpe 1155 (1642)
-.|.-...|+.+-+...-...++ -..-+-.+.+|=.-=|+.+-...+--.+.+..-+-.+..---|-.+|-+..
T Consensus 1219 LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S- 1297 (1439)
T PF12252_consen 1219 LRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDS- 1297 (1439)
T ss_pred HHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcch-
Q ss_pred ceEeeehhhhHHHHHHHhhhhhhHHHHhhh--------hHHHHHHHHhhhhhcccchhhhhhchhh------hHHHHHHH
Q psy16785 1156 HQVISVSQTFIRLKHLILEKNHLTNQLAKL--------KTLNNHLEIRLNHSEQRLNTVTTELKKT------WNVVNKLK 1221 (1642)
Q Consensus 1156 ~~ViSVSKTyIRLKDLILEKKsL~KEtNRL--------KtLN~HLE~RL~eQEKRLS~VS~ELtKT------WhlVgKMq 1221 (1642)
...----.-+.+|+++.+||...-=+|-.| -||-.--+.-.+..-|--.+-+-||+|- -..||-|-
T Consensus 1298 ~~a~Kqk~di~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h~~~l~k~~~~r~~el~~~~~e~Gi~~~~~~~~ 1377 (1439)
T PF12252_consen 1298 DTAQKQKEDIVKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAHQDNLAKTRKTRLQELTKQDREGGITGMVGNMF 1377 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccccchhhhhhHHH
Q ss_pred HHHhhhhhhhHHHHHHHHhHhhHHHHHHHHH
Q psy16785 1222 LQHKQLYTHEKILKYELKHKRNIINDLKIDL 1252 (1642)
Q Consensus 1222 rQHrQLHThEkILRYeLQqKRrLLsELKeEL 1252 (1642)
-.--.+----++=|-+|..|...|..+|.+|
T Consensus 1378 ~~~t~~iglt~der~~i~~K~~~l~~fk~~L 1408 (1439)
T PF12252_consen 1378 QGLTDYIGLTTDERLEIAMKQQSLARFKTDL 1408 (1439)
T ss_pred HhhhhhhccchhHHHHHHHHHHHHHHHHHhh
No 337
>KOG4673|consensus
Probab=32.05 E-value=8.1e+02 Score=32.07 Aligned_cols=65 Identities=20% Similarity=0.161 Sum_probs=38.2
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhccCCCCCcccccCCCCCcCccccccc
Q psy16785 1238 LKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQYDGGRSTSESGISTDTEDDNVEIVE 1311 (1642)
Q Consensus 1238 LQqKRrLLsELKeELEYCReKW~~AR~KN~eSE~qwk~LR~EFA~RK~~~d~~nnSaESGySDe~p~d~~e~~e 1311 (1642)
++.-|++-..+|++|+-.+.+-++.|.+-+-.+. +|.+.- |+. -..|+|.-+.-++++ ++++++-
T Consensus 752 e~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~~----~~~~le-rs~--a~i~Ssp~~s~~~Sg--Snee~ag 816 (961)
T KOG4673|consen 752 EVEIRELKRKHKQELQEVLLHVELIQKDLEREKA----SRLDLE-RST--ARINSSPVSSQLPSG--SNEEIAG 816 (961)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhCHH----HHhhcc-ccc--CccCCCCchhhCCCC--chHhHhc
Confidence 3455666677888888888888888876543322 222221 111 234666666666655 5555543
No 338
>PLN02678 seryl-tRNA synthetase
Probab=31.97 E-value=2.4e+02 Score=34.09 Aligned_cols=15 Identities=7% Similarity=-0.039 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHH
Q psy16785 882 NYKKLRELYEQRAAA 896 (1642)
Q Consensus 882 NIR~LR~LYEER~Rv 896 (1642)
+|-.|-.||++|..+
T Consensus 31 ~id~il~ld~~~r~l 45 (448)
T PLN02678 31 LVDEVIALDKEWRQR 45 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 477788888887665
No 339
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.95 E-value=2.7e+02 Score=34.51 Aligned_cols=91 Identities=19% Similarity=0.367 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHHHhccCchHH--HH---HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLESPEEI--KI---EYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQ 923 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Ers~dL--r~---EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K 923 (1642)
...++++..+++.+.....|..+| +. +|++++. +++..+ |+--.+--+ ..++++..|
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~----------------~i~~~~-ik~p~~i~~-~~~e~d~lk 225 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLE----------------AIKKKD-IKNPLELQK-IKEEFDKLK 225 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH----------------HHHhcc-CCCHHHHHH-HHHHHHHHH
Confidence 456677777777777777775555 32 3333332 222221 111111111 236778888
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHH
Q psy16785 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL 957 (1642)
Q Consensus 924 ~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l 957 (1642)
.++++..++.+.+...+....+.+...-.++++.
T Consensus 226 ~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 226 KEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 8888888888888777777766666655555443
No 340
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=5.2e+02 Score=33.11 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhccC
Q psy16785 852 SDLKTRLKDVEKKLLES 868 (1642)
Q Consensus 852 ~qLK~kL~qIE~sL~Er 868 (1642)
..+|.||.+||..+.+-
T Consensus 355 ~~yk~kl~~vEr~~~~~ 371 (652)
T COG2433 355 LAYKPKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 45678999999998775
No 341
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=31.61 E-value=7.7e+02 Score=27.54 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHhccCchHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLESPEEI 872 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Ers~dL 872 (1642)
..-.+|..+|.+++.........|
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L 28 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEAL 28 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888777665444333
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.61 E-value=6.5e+02 Score=27.18 Aligned_cols=105 Identities=26% Similarity=0.387 Sum_probs=51.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q psy16785 841 ATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLK 920 (1642)
Q Consensus 841 ~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~ 920 (1642)
+.+...+...+..|+.++.+++..+.+ -+..+...+.-|.=-++|... |+... -|+.+++
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~--------l~~~i~~~~~~r~~~~eR~~~--l~~l~----------~l~~~~~ 120 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEE--------LEEKIEEAKKGREESEEREEL--LEELE----------ELKKELK 120 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhcccccHHHHHH--HHHHH----------HHHHHHH
Confidence 344556777777777777777665532 223333333333333444443 11111 1223333
Q ss_pred HHHHHHHHHHHHhH-hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 921 EIQEEIQAQLEKYK-ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 921 e~K~eLqae~eK~K-nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
. |+++++++. +--+.|+.+..++..+.+.++.--.++...+.=|+
T Consensus 121 ~----l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 121 E----LKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred H----HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3 333333322 22345666666666666666666666655554443
No 343
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=31.59 E-value=8.1e+02 Score=28.77 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhccccccccccceeeeehhhHHHHHHHHHHHhhcCch---HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy16785 15 FILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPE---EIKIEYEKQMTNYKKL-RELYEQRAAAAELEHKTMIEK 90 (1642)
Q Consensus 15 ~v~tLkeVit~sKqMl~~keaQLK~KL~EIE~SlaE~~~---DLR~EYEKQL~NIR~L-RqLYEERaRaAa~e~e~LiRl 90 (1642)
|-.+|.+|...-+.| -..||...+-+.+.|+.+... +|+.+++.==..|.++ +++.+.-.-..-.....+.-+
T Consensus 53 fA~~ld~~~~kl~~M---s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~ 129 (301)
T PF06120_consen 53 FADSLDELKEKLKEM---SSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQ 129 (301)
T ss_pred HHHhhHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhh
Q psy16785 91 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI 170 (1642)
Q Consensus 91 e~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLl 170 (1642)
..+-.+|.++.. +|.+++++-..+........+-+.+..+....+- +....++-++++.|+. ..
T Consensus 130 ~~~t~~la~~t~-----~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~i---------r~~~~e~~~~~~sl~~--~~ 193 (301)
T PF06120_consen 130 ADATRKLAEATR-----ELAVAQERLEQMQSKASETQATLNDLTEQRIDLI---------RQKAAEQAGAYNSLKG--MN 193 (301)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH--Hh
Q ss_pred CCCCCHHHHHHH
Q psy16785 171 NPMINLDMLIKL 182 (1642)
Q Consensus 171 g~~~DlDrLi~m 182 (1642)
|...+||+|+-+
T Consensus 194 g~~~ef~~l~~l 205 (301)
T PF06120_consen 194 GAHAEFNRLMGL 205 (301)
T ss_pred ccHHHHHHHHHH
No 344
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.57 E-value=1.3e+03 Score=30.22 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh
Q psy16785 869 PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 948 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve 948 (1642)
....++=|-.+..||..+-.-||+=.-.|+.-+..|--| .|..++ +++..+.+... .+-..|+++.-|...++
T Consensus 178 REET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fK--lKE~~~--k~~~leeey~~---E~n~kEkqvs~L~~q~~ 250 (786)
T PF05483_consen 178 REETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFK--LKEDYE--KFEDLEEEYKK---EVNDKEKQVSLLQTQLK 250 (786)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHH--HHHHHHHHHHH---HhhhHHHHHHHHHHHHH
Confidence 456777788889999999999988544466666663211 111111 12222222222 23356778888888888
Q ss_pred hhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 949 LKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 949 ~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
.+..++..+.-.|..++.-|++|+.-...-|-+...
T Consensus 251 eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lke 286 (786)
T PF05483_consen 251 EKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKE 286 (786)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888877776665543
No 345
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.29 E-value=2.2e+02 Score=28.59 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHH
Q psy16785 116 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 160 (1642)
Q Consensus 116 ~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~ 160 (1642)
+..+-+++..++..++.+..++..+-..+.....+...+..++..
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 346
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.29 E-value=6.2e+02 Score=26.34 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY 890 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LY 890 (1642)
.....|.+.|....+ .+.+..+|+++|.+.+.=.+-+
T Consensus 53 ~I~~~l~~Ae~~~~e-A~~~~~e~e~~L~~a~~ea~~i 89 (175)
T PRK14472 53 GIQSSIDRAHSAKDE-AEAILRKNRELLAKADAEADKI 89 (175)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433322 7788889999998887544433
No 347
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.08 E-value=2.8e+02 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
++.-++...-|+.+|..|..+...+.++...|+
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344444444444444444444443333333
No 348
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.05 E-value=7.2e+02 Score=29.24 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 78 AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 157 (1642)
Q Consensus 78 RaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQ 157 (1642)
.-....|.+++.+..-..++...=-.|++.-+....+..+-++.+.+.|++++..++..+.+ +....-+.+.|..+
T Consensus 306 ~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~----~~~~~~~l~~L~Re 381 (458)
T COG3206 306 TELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSK----LPKLQVQLRELERE 381 (458)
T ss_pred HhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhh----chHhhhHHHHHHHH
Confidence 33344455555544444444322222222222222233344666666666666555554443 45567788899999
Q ss_pred HHHHHHHHHHhhh
Q psy16785 158 MTLVNNLFSNMLI 170 (1642)
Q Consensus 158 M~~VN~LFSqlLl 170 (1642)
..+...+|.++|-
T Consensus 382 ~~~~r~~ye~lL~ 394 (458)
T COG3206 382 AEAARSLYETLLQ 394 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988874
No 349
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=30.80 E-value=1e+03 Score=29.30 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=19.2
Q ss_pred HHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 140 LNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 140 l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
+.+++..-..++..|..++...+..+++
T Consensus 162 ~~~~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 162 LLEEIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555566677788888888777776
No 350
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.75 E-value=8e+02 Score=27.81 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q psy16785 850 LVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKT 903 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~ 903 (1642)
-+.++..++.+||+.+-..... ..|+.||+-|..+..+.+.-
T Consensus 155 ~le~i~~~~~~ie~~l~~~~~~------------~~l~~l~~l~~~l~~lr~~l 196 (322)
T COG0598 155 VLEQIEDELEAIEDQLLASTTN------------EELERLGELRRSLVYLRRAL 196 (322)
T ss_pred HHHHHHHHHHHHHHHHhcCccH------------HHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555332 45666666666665555443
No 351
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.67 E-value=7.3e+02 Score=26.97 Aligned_cols=100 Identities=11% Similarity=0.313 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHhccC----chHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES----PEEIKIEYEKQMTNYKKLRELYEQRAAA-AELEHKTMIEKELAKNALLEAKLKEIQ 923 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er----s~dLr~EYERQL~NIR~LR~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e~K 923 (1642)
.++.+.-.++.++....+.. .-+.=.||-| .|...|.++..|.++ .....-. +++.| +.-...|
T Consensus 73 ~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r---~i~svk~~f~~R~~a~~~~q~a~---~~l~k-----kr~~~~K 141 (224)
T cd07623 73 SQLAEVEEKIEQLHGEQADTDFYILAELLKDYIG---LIGAIKDVFHERVKVWQNWQNAQ---QTLTK-----KREAKAK 141 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHH
Confidence 35666777777776665554 3444567765 455667888898887 3333222 22211 1111111
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNE 959 (1642)
Q Consensus 924 ~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e 959 (1642)
-+....-+|...++..|..++..++....+.+.+-.
T Consensus 142 l~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~ 177 (224)
T cd07623 142 LELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISK 177 (224)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222356667777788787777777776666543
No 352
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.53 E-value=4e+02 Score=23.95 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhh
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 986 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmL 986 (1642)
.+...|+.|.+.+. ..+....+..+.|...+|...+.+=|..++
T Consensus 60 ~~~~~lk~l~~~~~--------~~~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 60 KIKKRLKQLSKDNE--------DSEGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHH--------HHHCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--------hhcccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 44555555555433 445567788899999999999888776653
No 353
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.36 E-value=9.5e+02 Score=29.66 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 77 AAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 156 (1642)
Q Consensus 77 aRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~a 156 (1642)
.-.+.+.-..++.|..||..=.- +.-+-+.|+..+.--.-+...+..|....+.+.+++.+++.++.......|.|+.
T Consensus 411 ~ii~~Lt~~~~~~L~~Ik~SprY--vdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 411 EIISQLTNPRTQHLFMIKSSPRY--VDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQK 488 (507)
T ss_pred HHHHHhcCHHHHHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33455555666666666654110 0011112222222233344455566666777788888888888888889999998
Q ss_pred HHHHHHHHHHHhhhCCCCCH
Q psy16785 157 QMTLVNNLFSNMLINPMINL 176 (1642)
Q Consensus 157 QM~~VN~LFSqlLlg~~~Dl 176 (1642)
++. .-+|.+.-|-.++|
T Consensus 489 ~iE---~~ISk~y~gR~Vni 505 (507)
T PF05600_consen 489 QIE---ADISKRYKGRPVNI 505 (507)
T ss_pred HHH---HHHHHHcCCCeeec
Confidence 765 34566665655443
No 354
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.21 E-value=1.6e+03 Score=30.72 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=26.4
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
..+++.++..+.+....+...+...++.+.....+...+...+
T Consensus 335 L~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~ 377 (1353)
T TIGR02680 335 LERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRL 377 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666677777777777776666666555544443
No 355
>PLN02320 seryl-tRNA synthetase
Probab=30.12 E-value=2.6e+02 Score=34.51 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=20.1
Q ss_pred cccceeeeehhhHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16785 25 SSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA 77 (1642)
Q Consensus 25 ~sKqMl~~keaQLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERa 77 (1642)
.-|-||.+|- +......+..++..+-.++ +|-.|-.||++|.
T Consensus 62 ~~~~mlD~k~--ir~n~~~v~~~l~~R~~~~---------~vd~l~~ld~~~r 103 (502)
T PLN02320 62 QWKAAIDFKW--IRDNKEAVAINIRNRNSNA---------NLELVLELYENML 103 (502)
T ss_pred ccccccCHHH--HHhCHHHHHHHHHhcCCCc---------CHHHHHHHHHHHH
Confidence 3367776553 3334444555554443221 2445555565543
No 356
>KOG2991|consensus
Probab=29.87 E-value=5.3e+02 Score=30.33 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 117 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 117 K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
.+|.+++.+|-.||++++..|-=|+.++.++..|-..|+.....|-
T Consensus 260 ~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 260 EELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999888887765553
No 357
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.68 E-value=2.5e+02 Score=28.16 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhh
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQL 949 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~ 949 (1642)
..|...+..++......+.++.+...+..+.+.
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~ 87 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDE 87 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 358
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.62 E-value=3.3e+02 Score=23.60 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
.+...+.+.+.+...+......++...+.-..| .... -+....+...+..+|.-|..+
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~~--~~~~~~i~~~~~~l~~~w~~l 92 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQL-IDSG--PEDSDEIQEKLEELNQRWEAL 92 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777776666666666 2222 444566777777777776554
No 359
>KOG0992|consensus
Probab=29.59 E-value=9.3e+02 Score=30.54 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=15.1
Q ss_pred HhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 945 KNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 945 ~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
+..+.+..-|++++.+|...+++|+
T Consensus 315 ~~n~~~~~lie~lq~el~~al~~c~ 339 (613)
T KOG0992|consen 315 KQNDDKVKLIEELQDELSVALKECR 339 (613)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666677777777776
No 360
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.46 E-value=3.1e+02 Score=29.88 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 68 KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 147 (1642)
Q Consensus 68 ~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~ 147 (1642)
.+|.=|++.=.+|..+++...+.. ..| -+ +..++=+...+........+..+.+.+.+++++|+.++...
T Consensus 54 ~VRkqY~~~i~~AKkqRk~~~~~~---~~l---tl----~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~L 123 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRKELKREA---GSL---TL----QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHHHHHHhccccCc---ccC---CH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888777777776533310 000 00 12333344444444444555555555555555555555555
Q ss_pred HHHHHHhHHHHHHHHH
Q psy16785 148 LAENHILNSQMTLVNN 163 (1642)
Q Consensus 148 ~aE~r~L~aQM~~VN~ 163 (1642)
..|...|..+...|..
T Consensus 124 e~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 124 EKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 361
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=29.43 E-value=9.4e+02 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 923 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 923 K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
|.+.+.=++-..+|+...++|.-+++.+..-+.-++-+|..++.....|..++.
T Consensus 66 kREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 66 KRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555667777777777777666666666666666665555555543
No 362
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.35 E-value=6.7e+02 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q psy16785 851 VSDLKTRLKDVEKKL 865 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL 865 (1642)
+.++..+++++|..+
T Consensus 16 ~e~~e~~~K~le~~~ 30 (143)
T PF12718_consen 16 AEELEAKVKQLEQEN 30 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 363
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.27 E-value=2e+02 Score=28.97 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNL 164 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~L 164 (1642)
++=+++..|+..+..+.+++..|+..+.+...|+..|.-|-.-+-..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555554444333333
No 364
>KOG0979|consensus
Probab=28.98 E-value=1.6e+03 Score=30.62 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhcCch---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESPE---EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 112 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~~---DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE 112 (1642)
+|..+.++||.++..... -|+++-+++..-.-.+| +|.+ .. ..|++-..|+-.- +.+.-..+..+.
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r----er~~--~~---~~Ie~l~~k~~~v--~y~~~~~ey~~~ 253 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR----ERER--KK---SKIELLEKKKKWV--EYKKHDREYNAY 253 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHH--HH---HHHHHHHHhcccc--chHhhhHHHHHH
Confidence 445667777777775543 45555554443333222 2322 22 2233111222111 112223355555
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH----HHHHHHHHH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM----TLVNNLFSN 167 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM----~~VN~LFSq 167 (1642)
+.-.+.+++.+..|.+++.-..+-++.|+.+...+..++-++...| +=++..|+.
T Consensus 254 k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 254 KQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666667766666555555555544433333333333333 334555554
No 365
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=28.78 E-value=5.1e+02 Score=26.59 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
|.++....|.-...++.|+..|.+.++.-+..+-....|+..|.=.-.....-...||.+|..
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444446667789999999999999888888888888888776665555666667777663
No 366
>KOG0971|consensus
Probab=28.31 E-value=1.7e+03 Score=30.35 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.8
Q ss_pred hHHHHHHHHhH------hhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16785 1231 EKILKYELKHK------RNIINDLKIDLEYVREKWDLVKEKNE 1267 (1642)
Q Consensus 1231 EkILRYeLQqK------RrLLsELKeELEYCReKW~~AR~KN~ 1267 (1642)
-.+++|-||.- -.||..|-++-.-||.+--.+|.+.-
T Consensus 777 t~r~~~flQe~~eatds~~llq~Lne~~~a~rq~~kki~RrLp 819 (1243)
T KOG0971|consen 777 TGRLRAFLQEGQEATDSALLLQDLNESCSAIRQFCKKIRRRLP 819 (1243)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35778888764 35888888899999888777776643
No 367
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.97 E-value=4e+02 Score=33.39 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhh
Q psy16785 176 LDMLIKLIQDNYLLIIDLINN 196 (1642)
Q Consensus 176 lDrLi~mLEENr~LL~dMt~n 196 (1642)
+-+|.+-.+=|+.|...|.++
T Consensus 372 ~~~L~R~~~~~~~lY~~lL~r 392 (726)
T PRK09841 372 VLRLSRDVEAGRAVYLQLLNR 392 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444
No 368
>KOG0992|consensus
Probab=27.93 E-value=1.3e+03 Score=29.32 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=41.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhH
Q psy16785 925 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNY 1004 (1642)
Q Consensus 925 eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr 1004 (1642)
.++.++.+++.+-+-|.+|+.++.++-.+-..-+-.=..--.+.+.|+++.+.++-.=. ++-- -.||..++++---
T Consensus 309 K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~t-lla~---~~dr~se~~e~te 384 (613)
T KOG0992|consen 309 KAKDEIKQNDDKVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKT-LLAA---ADDRFSEYSELTE 384 (613)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHH-HHHH---HHHHHHHHHHHHH
Confidence 56667777777777777777777666544331110011222345566666665554311 1111 1466666665444
Q ss_pred HHHHHH
Q psy16785 1005 LLIIDL 1010 (1642)
Q Consensus 1005 ~LL~dM 1010 (1642)
.-+.++
T Consensus 385 qkleel 390 (613)
T KOG0992|consen 385 QKLEEL 390 (613)
T ss_pred HHHHHH
Confidence 444444
No 369
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.83 E-value=8.6e+02 Score=28.79 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=66.7
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhh---------C---------
Q psy16785 110 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI---------N--------- 171 (1642)
Q Consensus 110 qaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLl---------g--------- 171 (1642)
|+=+.+++.|.+++..|++.+..+.+.|.+|+-+++ .=+.|+.-+-. +
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~--------------~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~ 151 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS--------------MKDELLQIYSNDDEESEPESSESTPLRRNE 151 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhcCcHhhhcccccCCCccccccc
Confidence 344577888888888888888777777777765554 33333221110 0
Q ss_pred ------CCCCHHHHHH----HHHHhHHHHHHHHhhcCCcchhH-------HHHHHhhhchhhHHHh------------hh
Q psy16785 172 ------PMINLDMLIK----LIQDNYLLIIDLINNHEINDTVS-------LLVDLEKKIDQETLAI------------QN 222 (1642)
Q Consensus 172 ------~~~DlDrLi~----mLEENr~LL~dMt~nE~~Sdtas-------LL~dLv~qi~eeS~av------------E~ 222 (1642)
.-+++|-|-+ +=+||..|-..-+.=- .++++ |+.|.|+|..+-+.-+ +|
T Consensus 152 ~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~--~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~ 229 (306)
T PF04849_consen 152 SSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLK--TETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEEN 229 (306)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 2255665544 4468999987655443 33334 8999999965444311 46
Q ss_pred hhhHHHHhhccc
Q psy16785 223 DKQLKQLENYET 234 (1642)
Q Consensus 223 ~k~~eeIi~NLP 234 (1642)
..+-++|..-+.
T Consensus 230 ~rQQEEIt~Lls 241 (306)
T PF04849_consen 230 RRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHH
Confidence 777777765443
No 370
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=27.83 E-value=7e+02 Score=26.09 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 927 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLq 927 (1642)
+.++++|-..++++++.=..|-+..++.=+.-=.+.-.++.+|..|...-+.=... +...-.|++-.
T Consensus 26 ~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-------------~~~r~yk~eYk 92 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-------------SKVRWYKDEYK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------GGGSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-------------cchhHHHHHHH
Q ss_pred HHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 928 AQLEKYKENKKQILEMEKNIQLKDDEINNLNE 959 (1642)
Q Consensus 928 ae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e 959 (1642)
.=+++++.+-..+.+--.+-+..=++.+.+.+
T Consensus 93 ~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~ 124 (126)
T PF09403_consen 93 ELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQS 124 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 371
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.79 E-value=7.3e+02 Score=26.01 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHhHHHHHH
Q psy16785 869 PEEIKIEYEKQMTNYKKLRE 888 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~ 888 (1642)
.+.+..+|+++|.+.+.=.+
T Consensus 68 A~~~~~e~e~~l~~a~~ea~ 87 (173)
T PRK13453 68 AQKLEEENKQKLKETQEEVQ 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888765433
No 372
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=27.52 E-value=5e+02 Score=30.19 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhH
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~l 977 (1642)
++....+++..+..++.+...|..++...+.+...+++.++.
T Consensus 200 ~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 200 EKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344444555555556666666666666666666666666543
No 373
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=26.84 E-value=1.7e+02 Score=30.29 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhH---HHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH--hh
Q psy16785 95 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD---DEINNLNENLTSSLAENHILNSQMTLVNNLFSN--ML 169 (1642)
Q Consensus 95 ndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~---dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq--lL 169 (1642)
+++..||+ ++=++-||-+....+.+++-.-. .|+.+.+++ -..+...|+++...|=.+|++ ++
T Consensus 31 ~dl~~akl---------~LL~~TnMvDy~~d~~~~l~~~~e~p~e~~~kr~~---Vl~~l~~l~~~~~~v~~~~~~~ev~ 98 (133)
T PF09440_consen 31 EDLLKAKL---------DLLKKTNMVDYAMDLYKELYPDDEVPAELAEKREE---VLAELKELEEETEPVLELLEDPEVV 98 (133)
T ss_pred HHHHHHHH---------HHHHhccchHHHHHHHHHhcCCCCCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 57888888 66688899999999999984444 455555544 466777899999999888854 22
Q ss_pred hCCCCCHHHHHHHHHHhHHHHHHH
Q psy16785 170 INPMINLDMLIKLIQDNYLLIIDL 193 (1642)
Q Consensus 170 lg~~~DlDrLi~mLEENr~LL~dM 193 (1642)
.+-..|-..+...|++||++=.+|
T Consensus 99 ~~l~~dk~~nl~~L~~~h~it~e~ 122 (133)
T PF09440_consen 99 KNLRSDKKQNLEYLEENHGITPEM 122 (133)
T ss_pred HHHHccHHHHHHHHHHhcCCCHHH
Confidence 221115555566666666654444
No 374
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.83 E-value=5e+02 Score=28.97 Aligned_cols=76 Identities=29% Similarity=0.401 Sum_probs=50.0
Q ss_pred hhHHHHhhhh-HHHHHHHHhhhhhcccchhhhhhchhhhH--HHHHHHHHHhhhhhhhHHH----HHHHHhHhhHHHHHH
Q psy16785 1177 HLTNQLAKLK-TLNNHLEIRLNHSEQRLNTVTTELKKTWN--VVNKLKLQHKQLYTHEKIL----KYELKHKRNIINDLK 1249 (1642)
Q Consensus 1177 sL~KEtNRLK-tLN~HLE~RL~eQEKRLS~VS~ELtKTWh--lVgKMqrQHrQLHThEkIL----RYeLQqKRrLLsELK 1249 (1642)
.+...+..+. .|+..+..+|....++|......|....+ ...+++.++++|-...+-| ++.|+.++.-|..|.
T Consensus 147 ~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~ 226 (319)
T PF02601_consen 147 ELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS 226 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 57788888888888888888888877775 3467888887776555444 445555555555555
Q ss_pred HHH
Q psy16785 1250 IDL 1252 (1642)
Q Consensus 1250 eEL 1252 (1642)
..|
T Consensus 227 ~~l 229 (319)
T PF02601_consen 227 NRL 229 (319)
T ss_pred Hhh
Confidence 433
No 375
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=26.74 E-value=8.6e+02 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE 888 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~ 888 (1642)
+=+..-..+|.++.++=.+||+||=++|.+-+.|=.
T Consensus 30 ~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklyd 65 (196)
T PF15272_consen 30 ERDERYELQETSYKEKYQQLRQELINELKQSKKLYD 65 (196)
T ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444567778888888999999999988777654
No 376
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.72 E-value=1.1e+03 Score=28.56 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcH-------HH-HHHhHHHHhHHHHHHHHh
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSL-------AE-NHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tk-------aE-~r~L~~QM~lVN~LFSqm 985 (1642)
+++....+.||.|--+++-||+++.++ ++.-++||.+|+.+|..+. +| .|++++=|....+=++.|
T Consensus 244 ~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 244 REYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556667777888888888899888766 4566677777777775442 12 355555666655555444
No 377
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.71 E-value=4e+02 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
+.|-..+..|++.++.+..+++.++..+....++.+.|+.|
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555555544
No 378
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.62 E-value=9.2e+02 Score=26.81 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCChHHHHHHHHHhHHHHHHHhhccccccchhhhhhhhhhcchhhhhhhhhHHH
Q psy16785 989 PMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQL 1043 (1642)
Q Consensus 989 ~~iDLDrL~~lLEENr~LL~dMt~~~einet~s~l~d~A~kE~s~tlaa~LPKlL 1043 (1642)
..||+|++-.++.+-.+.+-.. .||++..+.-......+|-..+-+.|-.+.
T Consensus 119 k~i~id~Vd~l~Dei~E~~e~~---~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le 170 (211)
T PTZ00464 119 KKLNVDKVEDLQDELADLYEDT---QEIQEIMGRAYDVPDDIDEDEMLGELDALD 170 (211)
T ss_pred hcCCHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 5689999999999888775443 556666554222222244455555555444
No 379
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=26.33 E-value=6.5e+02 Score=24.96 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=35.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYL 1005 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~ 1005 (1642)
++..++++-++-..+..+.-.++++.. ...+-.-|...|..+.++. ..+|+|++..++.+=.+
T Consensus 53 ~~k~~~~~~~~~~~l~~~~~~ie~a~~---------------~~~v~~al~~~~~~Lk~~~--~~i~~~~v~~~~d~~~e 115 (171)
T PF03357_consen 53 LEKQLEKLLNQLSNLESVLLQIETAQS---------------NQQVVKALKQSSKALKKIN--KQINLDKVEKLMDDFQE 115 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHSSS----SHHHHHHH--HSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHH
Confidence 444444554554455444444443332 2223333444444444442 35678888888887777
Q ss_pred HHHHHhhccccccchhhhh
Q psy16785 1006 LIIDLINNHEINDTVSLLV 1024 (1642)
Q Consensus 1006 LL~dMt~~~einet~s~l~ 1024 (1642)
.+.++ .+|++..+.-+
T Consensus 116 ~~e~~---~ei~~~l~~~~ 131 (171)
T PF03357_consen 116 EMEDQ---DEISEALSDSM 131 (171)
T ss_dssp HHHHH---TS---------
T ss_pred HHHHH---HHHHHHHHccc
Confidence 66665 45555555433
No 380
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.27 E-value=6.3e+02 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 912 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 912 n~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
..|+++..++.+..|...++ .++..+..|++..+.+...+.+++.++.
T Consensus 58 ~vlv~~~~~e~~~~l~~r~e---~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 58 NLLVKTDKEEAIQELKEKKE---TLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhhheecHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35676777777666664443 4577777777777777777777777654
No 381
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.23 E-value=8.5e+02 Score=26.27 Aligned_cols=65 Identities=28% Similarity=0.303 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHH
Q psy16785 90 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 167 (1642)
Q Consensus 90 le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSq 167 (1642)
-+-+|+..++|+ ++|-.|..-.++-+.|..+-..||..+..+.+.|+... .|-+||++|=++.|.
T Consensus 76 E~dik~AYe~A~--~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE-----------~l~sqi~vvl~yL~~ 140 (159)
T PF05384_consen 76 EEDIKEAYEEAH--ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAE-----------NLVSQIGVVLNYLSG 140 (159)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHh
Confidence 345888888884 58889999999999999999999999888888877543 477899988776654
No 382
>KOG0288|consensus
Probab=26.21 E-value=1.2e+03 Score=29.13 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=12.6
Q ss_pred chhHHHHHHHHhhhhcccc
Q psy16785 1114 LPKVWRILIELLNTHQEQY 1132 (1642)
Q Consensus 1114 LPKVWRVLiELLS~Hqe~~ 1132 (1642)
+=|.|+|+-+=..-|+.-+
T Consensus 198 ~Ik~W~v~~~k~~~~~tLa 216 (459)
T KOG0288|consen 198 IIKLWNVLGEKSELISTLA 216 (459)
T ss_pred hhhhhhcccchhhhhhhhh
Confidence 3478999987755555433
No 383
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.16 E-value=5.8e+02 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=8.0
Q ss_pred hhhhhhhHHHHhh
Q psy16785 351 LLRDHTCTIVRAH 363 (1642)
Q Consensus 351 ILRQqKR~lL~EL 363 (1642)
+||+.-+..|+.+
T Consensus 746 ~Lr~~v~~~L~~~ 758 (782)
T PRK00409 746 KLRKGVQEFLKKH 758 (782)
T ss_pred HHHHHHHHHHcCC
Confidence 6666666666555
No 384
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.14 E-value=1.3e+03 Score=28.27 Aligned_cols=144 Identities=14% Similarity=0.097 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhhhh
Q psy16785 54 EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEI-QEEIQAQLEKYKENKKQILEMEKNIQL 132 (1642)
Q Consensus 54 DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~-~~elqaE~eK~K~leeri~~LEkeVet 132 (1642)
.++.+|.+--..++.++.-+.+-+.-...-...+-.+...-++|+++.++.- .++|.++..+-++.++-...+..=++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~ 237 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAA 237 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6888888777777777665544322211111111112222223333333211 145677776666655544443333332
Q ss_pred hH-----------HHHHHHHHHhhhc--------HHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHH
Q psy16785 133 KD-----------DEINNLNENLTSS--------LAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 193 (1642)
Q Consensus 133 k~-----------dEi~~l~e~l~s~--------~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dM 193 (1642)
+. +.|......+... .........++.-+-.-++..+.+=..|.++|.. |++=...+.++
T Consensus 238 L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e-le~RL~~l~~L 316 (563)
T TIGR00634 238 LRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE-IEERLAQIKRL 316 (563)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHH
Confidence 22 1222222222111 1111111122222222233333334566666665 55556678888
Q ss_pred HhhcC
Q psy16785 194 INNHE 198 (1642)
Q Consensus 194 t~nE~ 198 (1642)
..+.+
T Consensus 317 krKyg 321 (563)
T TIGR00634 317 KRKYG 321 (563)
T ss_pred HHHhC
Confidence 88887
No 385
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.13 E-value=1.1e+03 Score=29.17 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=49.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCCh
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINL 993 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDL 993 (1642)
|+..+.-...+...+..|+.+.+.+..++.+++.+|....+.+|.|+.++- .-+|++.-|..+||
T Consensus 441 L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE---~~ISk~y~gR~Vni 505 (507)
T PF05600_consen 441 LQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE---ADISKRYKGRPVNI 505 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCeeec
Confidence 444444445566677778888888899999999999999999999998754 56788777755554
No 386
>PF14182 YgaB: YgaB-like protein
Probab=26.11 E-value=2.4e+02 Score=27.97 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHh--hhhhHHHHHHHHHHh
Q psy16785 924 EEIQAQLEKYKENKKQILEMEKN--IQLKDDEINNLNENL 961 (1642)
Q Consensus 924 ~eLqae~eK~KnlEe~i~~Le~d--ve~~~dEi~~l~e~l 961 (1642)
=.||++++.+.+.+.++..++.+ +...++||..++.+|
T Consensus 17 L~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~L 56 (79)
T PF14182_consen 17 LFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKEL 56 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35899999999999999998764 334445555555444
No 387
>smart00338 BRLZ basic region leucin zipper.
Probab=25.85 E-value=1.6e+02 Score=26.29 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNE 142 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e 142 (1642)
|+..+..|...|..+..++..++.
T Consensus 38 L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333
No 388
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.79 E-value=9.9e+02 Score=26.88 Aligned_cols=104 Identities=19% Similarity=0.205 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh-------HHHHh
Q psy16785 904 MIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL-------NSQMT 976 (1642)
Q Consensus 904 ~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L-------~~QM~ 976 (1642)
+++.|+..-.-+-..|.+....|.++ ++.+|++.+.|..+++++++|-.++..+....+....+| +.|+-
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq---~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQ---ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 34444443333336677777777654 567888888888888888887777777766666555555 45554
Q ss_pred HHHHHHHHh---hcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 977 LVNNLFSNM---LINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 977 lVN~LFSqm---LLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
.+-.||++. +.-....++-|..-|+|=+.+..++
T Consensus 141 ~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeL 177 (193)
T PF14662_consen 141 EFESLICQRDAILSERTQQIEELKKTIEEYRSITEEL 177 (193)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444444442 1115556666666666666555555
No 389
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.63 E-value=1.1e+03 Score=30.26 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=13.8
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16785 869 PEEIKIEYEKQMTNYKKLRELYEQRA 894 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~LYEER~ 894 (1642)
.++.+.+|+.+..-+..++.-+++..
T Consensus 520 L~~~~~~~e~~~~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 520 LSALEKELEQKNEHLEKLLKEQEKLK 545 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666665555554444433
No 390
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=25.47 E-value=1.1e+03 Score=27.83 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhH---HHHHHHHHHHHHH
Q psy16785 855 KTRLKDVEKKLLESPEEIKIEYEKQMTNY---KKLRELYEQRAAA 896 (1642)
Q Consensus 855 K~kL~qIE~sL~Ers~dLr~EYERQL~NI---R~LR~LYEER~Rv 896 (1642)
+.|....+..+.+.....+.+|+++|..+ -..|+.|.+|.++
T Consensus 47 ~~k~~~~~~~~~~~~~~~~~~~~~~la~~G~g~~~~~r~~~~~~i 91 (332)
T TIGR01541 47 ERKALEALKKLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQI 91 (332)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44444555666666777788888888775 2455666666555
No 391
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.41 E-value=8.5e+02 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHH-HHHHH
Q psy16785 874 IEYEKQMTNYKK-LRELY 890 (1642)
Q Consensus 874 ~EYERQL~NIR~-LR~LY 890 (1642)
..|..+..|+-. |-+++
T Consensus 83 ~~Y~~~f~syY~~L~~~i 100 (184)
T PF05791_consen 83 INYNTTFQSYYDTLVEAI 100 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777666544 66665
No 392
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.12 E-value=1.4e+03 Score=28.39 Aligned_cols=298 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh---------
Q psy16785 892 QRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT--------- 962 (1642)
Q Consensus 892 ER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~--------- 962 (1642)
+|.+..--.......++.+.+.++ +++++...++.....+..+++.++..++.+++.+...+..++..+.
T Consensus 185 ~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~ 263 (650)
T TIGR03185 185 DRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263 (650)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred --hcHHHHHHhHHHHhHHHHHHHHhhcC------CCCChHHHHHHHHHhHHHHHHHhhccccccchhhhhhhhhhcchhh
Q psy16785 963 --SSLAENHILNSQMTLVNNLFSNMLIN------PMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQET 1034 (1642)
Q Consensus 963 --~tkaE~r~L~~QM~lVN~LFSqmLLG------~~iDLDrL~~lLEENr~LL~dMt~~~einet~s~l~d~A~kE~s~t 1034 (1642)
...++...+..+..-+..-+.++..| ..-=++++.+.|+.-+.....-... .-
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~-------------------~~ 324 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQ-------------------EE 324 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------HH
Q ss_pred hhhhhhHHHhhhhc-ccCCchhhhHHHhhccCCCCCcccccccccccccCCCCCCCCCccCCCccccccccCCHHHHHhh
Q psy16785 1035 LAIQNDKQLKQLEN-YETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEIANN 1113 (1642)
Q Consensus 1035 laa~LPKlL~~~e~-~~~~~~~dLVeqVe~~~~s~s~ds~~~q~dd~~~ns~~e~~~~~~e~n~~~~~~k~~s~eEIa~N 1113 (1642)
+....-.++..+.. -..+-.++-|...-............+.++.....-.. -..-|.+-
T Consensus 325 l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 385 (650)
T TIGR03185 325 LEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQ-------------------LEVLIQQV 385 (650)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHH-------------------HHHHHHHh
Q ss_pred chhHHHHHHHHhhhhcccccCCCcCccccccccccccCCCccceEeeehhhhHHHHHHHhhhhhhHHHHhhhhHHHHHHH
Q psy16785 1114 LPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLE 1193 (1642)
Q Consensus 1114 LPKVWRVLiELLS~Hqe~~e~~~~~e~~~~CyKsv~T~~Gpe~~ViSVSKTyIRLKDLILEKKsL~KEtNRLKtLN~HLE 1193 (1642)
.|..+.-+..|+..-..--.... ..-+.+....++ -.++.|.-+++.+.+++..++.--.-+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~e~el~------~l~~~l~~~~~~-----------e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 386 KRELQDAKSQLLKELRELEEELA------EVDKKISTIPSE-----------EQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCCCh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHHHH
Q psy16785 1194 IRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLE 1253 (1642)
Q Consensus 1194 ~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeELE 1253 (1642)
.++..-++++..+..++.+ ++.+......-.+.+.| ++.=|.+|.+++..|.
T Consensus 449 ~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~ 500 (650)
T TIGR03185 449 RQLETLKEAIEALRKTLDE-------KTKQKINAFELERAITI-ADKAKKTLKEFREKLL 500 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHH
No 393
>KOG0963|consensus
Probab=25.02 E-value=1.6e+03 Score=29.04 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 143 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~ 143 (1642)
+++.+.-+++.+.+++.|..|+..+...+.++-.++.+
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 33444444555566666666655555555555554444
No 394
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.92 E-value=95 Score=28.73 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHhhcCc---hHHHHHHHHHHHhHHHHHHHHHH
Q psy16785 35 SDLKTRLKDVEKKLLESP---EEIKIEYEKQMTNYKKLRELYEQ 75 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE~~---~DLR~EYEKQL~NIR~LRqLYEE 75 (1642)
..|-+++..|+.++.-.. .+||.+-|+==+||+.|=.|||-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555222 28999999999999999999985
No 395
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.84 E-value=4.9e+02 Score=27.89 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=66.3
Q ss_pred hHHHHHHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHH-HhhhhhhhHHHHHH--HHhH
Q psy16785 1165 FIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQ-HKQLYTHEKILKYE--LKHK 1241 (1642)
Q Consensus 1165 yIRLKDLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQ-HrQLHThEkILRYe--LQqK 1241 (1642)
+=+|.| |.+|.-.+.+.-|+..+.|.+.- .+|=+-|+.--.|+..-|+.-+.---- |+-.|.+-.|-.++ ++|.
T Consensus 7 L~~l~d--l~~k~~e~a~~el~k~~~~~~~~-~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~Le~~I~q~ 83 (148)
T COG2882 7 LQKLLD--LAKKEEEEAAIELSKIRSEKENA-EEQLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQLEVAIDQQ 83 (148)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 57788888888888888888753 334444555556666666554433222 22236666666665 6899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy16785 1242 RNIINDLKIDLEYVREKWDLVKEK 1265 (1642)
Q Consensus 1242 RrLLsELKeELEYCReKW~~AR~K 1265 (1642)
+.-++.+...+|-||+.|...+..
T Consensus 84 ~~~~~~~~~~ve~~r~~w~ek~~~ 107 (148)
T COG2882 84 QSQLSKLRKQVEQKREIWQEKQIE 107 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 396
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.75 E-value=1.3e+03 Score=29.65 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=3.9
Q ss_pred CCCcccc
Q psy16785 818 LTNGVCL 824 (1642)
Q Consensus 818 ~~~~~~~ 824 (1642)
|..|+|.
T Consensus 475 l~~G~~g 481 (771)
T TIGR01069 475 LLKGIPG 481 (771)
T ss_pred ECCCCCC
Confidence 4566653
No 397
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=24.67 E-value=1e+03 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHH
Q psy16785 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLREL 889 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~L 889 (1642)
..++...|.-+|.+|+ ||-+=|+|+=..|..++.-
T Consensus 78 rdq~~~dL~s~E~sfs----dl~~ryek~K~vi~~~k~N 112 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFS----DLHKRYEKQKEVIEGYKKN 112 (207)
T ss_pred HHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHh
Confidence 3445556666666665 7888888887777777663
No 398
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.38 E-value=9.6e+02 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=14.4
Q ss_pred CCHHHHHhhchhHHHHHHHH
Q psy16785 1105 HIQKEIANNLPKVWRILIEL 1124 (1642)
Q Consensus 1105 ~s~eEIa~NLPKVWRVLiEL 1124 (1642)
.+-.+|++.|-++=+.|=.-
T Consensus 222 ~~Dd~Iv~aln~yt~~lQ~~ 241 (247)
T PF06705_consen 222 QSDDDIVQALNHYTKALQDG 241 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 35678999888887776443
No 399
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.34 E-value=2e+02 Score=32.82 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 126 MEKNIQLKDDEINNLNENLTSSLAENHILNSQ 157 (1642)
Q Consensus 126 LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQ 157 (1642)
.+.++..+++.|..++.++.....|+..|..+
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333443334444444333
No 400
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.19 E-value=3.3e+02 Score=27.52 Aligned_cols=39 Identities=28% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 925 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 925 eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
.+..=..+...|+..+..|.++...+.-|-.+|++.|..
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555555555555554443
No 401
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.18 E-value=8.2e+02 Score=30.22 Aligned_cols=93 Identities=22% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy16785 855 KTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYK 934 (1642)
Q Consensus 855 K~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~K 934 (1642)
..++.-+++.|.+++..+-.=.+.++.+|+..|..-+.-.+........ ++-.|+..+.....+++...
T Consensus 113 dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK-----------~e~sLe~eR~k~~~ql~~~~ 181 (438)
T COG4487 113 DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKK-----------LEESLELEREKFEEQLHEAN 181 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----------HHhhHHHHHHHHHHHHHHhH
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNE 959 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e 959 (1642)
+.-...+.++.++.+..++++++.
T Consensus 182 -~~~e~~e~~e~~~s~~~~~k~~k~ 205 (438)
T COG4487 182 -LDLEFKENEEQRESKWAILKKLKR 205 (438)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
No 402
>KOG3119|consensus
Probab=24.00 E-value=2.8e+02 Score=31.24 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNE 959 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e 959 (1642)
.|++++..|...|+.+..|+.++..
T Consensus 226 ~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 226 ELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444444444443
No 403
>PLN02320 seryl-tRNA synthetase
Probab=23.83 E-value=5.3e+02 Score=32.01 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=16.2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 857 RLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 857 kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
....+..++..|--++ +|-.|-.||++|..+
T Consensus 75 n~~~v~~~l~~R~~~~---------~vd~l~~ld~~~r~~ 105 (502)
T PLN02320 75 NKEAVAINIRNRNSNA---------NLELVLELYENMLAL 105 (502)
T ss_pred CHHHHHHHHHhcCCCc---------CHHHHHHHHHHHHHH
Confidence 4455555666662111 255666666665544
No 404
>KOG4005|consensus
Probab=23.79 E-value=2.9e+02 Score=31.94 Aligned_cols=20 Identities=30% Similarity=0.124 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhcccccCCC
Q psy16785 1117 VWRILIELLNTHQEQYENND 1136 (1642)
Q Consensus 1117 VWRVLiELLS~Hqe~~e~~~ 1136 (1642)
+|.-|+--|+|-|++-....
T Consensus 268 s~~~l~n~~~~~~~q~~~~~ 287 (292)
T KOG4005|consen 268 SDGHLANGLNVEQEQETEHK 287 (292)
T ss_pred chhhhhccCchHHHHHHhhh
Confidence 68888888887776544433
No 405
>PRK10869 recombination and repair protein; Provisional
Probab=23.72 E-value=5.6e+02 Score=31.49 Aligned_cols=46 Identities=4% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 918 KLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 918 ~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
.+-..+++++.+++...+.++.++.|+++++.+.+++..+-.+|+.
T Consensus 321 ~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 321 ELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888899999999999999998888888777764
No 406
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.66 E-value=1.5e+02 Score=28.90 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.0
Q ss_pred hcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 963 SSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 963 ~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
......|.|.-.||+|..||---
T Consensus 38 ~lL~~LR~LE~K~glV~TL~KaS 60 (78)
T PF08656_consen 38 ELLDGLRELERKIGLVYTLFKAS 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999643
No 407
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=23.47 E-value=1e+03 Score=26.83 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHhhc
Q psy16785 35 SDLKTRLKDVEKKLLE 50 (1642)
Q Consensus 35 aQLK~KL~EIE~SlaE 50 (1642)
.+++..|.+.+..+..
T Consensus 82 ~~~~~~l~~a~a~l~~ 97 (346)
T PRK10476 82 RPYELTVAQAQADLAL 97 (346)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554443
No 408
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=23.40 E-value=1e+03 Score=26.24 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
++..+..|...+.+--..+..+...|-..|..|+.++. .+|.+-+...+-+..+= ..|......-
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq--~qLlq~~k~~~~l~~eL-------------q~l~~~~~~k 80 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQ--DQLLQKEKEQAKLQQEL-------------QALKEFRRLK 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------------HHhHHHHHHH
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh-hhcHHHHHHhHHHH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENL-TSSLAENHILNSQM 975 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l-~~tkaE~r~L~~QM 975 (1642)
. ..+.+|..|++++.....+....-..+ +....|+..|..|+
T Consensus 81 ~-------~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 81 E-------QQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>KOG0163|consensus
Probab=22.86 E-value=1.2e+03 Score=30.98 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=41.4
Q ss_pred ccccccCCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHhHHHH
Q psy16785 824 LKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKKL 886 (1642)
Q Consensus 824 ~~~~~~m~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Er------s~dLr~EYERQL~NIR~L 886 (1642)
.|.|.-.+.+-.--+||+.-..-|++-....+.-..+|+.-...= ..++..||++-+.|+..|
T Consensus 840 ~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~ 908 (1259)
T KOG0163|consen 840 RKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKL 908 (1259)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 355555566666667777666666666666666666666544432 577888898888887665
No 410
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.82 E-value=2.1e+02 Score=32.66 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNEN 960 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~ 960 (1642)
.+++.+..|+++.+....+...++.+
T Consensus 246 ~l~~~l~~l~~~~~~~~~e~~~l~~~ 271 (344)
T PF12777_consen 246 ELEEKLAALQKEYEEAQKEKQELEEE 271 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333333333
No 411
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.81 E-value=1.1e+03 Score=27.83 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=19.4
Q ss_pred hhhcHHHHHHhHHHHhHHHHHHHHhh
Q psy16785 961 LTSSLAENHILNSQMTLVNNLFSNML 986 (1642)
Q Consensus 961 l~~tkaE~r~L~~QM~lVN~LFSqmL 986 (1642)
+...+.+.+.|+-+..+...++.++|
T Consensus 368 ~~~~~~~l~~L~Re~~~~r~~ye~lL 393 (458)
T COG3206 368 LPKLQVQLRELEREAEAARSLYETLL 393 (458)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888877765
No 412
>KOG1161|consensus
Probab=22.71 E-value=8.4e+02 Score=28.96 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=57.1
Q ss_pred hHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHH----HHHHHHHHhhhhhhhHHHHHHHHhH
Q psy16785 1178 LTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNV----VNKLKLQHKQLYTHEKILKYELKHK 1241 (1642)
Q Consensus 1178 L~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhl----VgKMqrQHrQLHThEkILRYeLQqK 1241 (1642)
..-.+.-++-.|+|++.=++-..+.+.+-+.+|.-+|.. |+--++-|+-+-|.++-.||.+.+|
T Consensus 222 ~d~ait~~~~~n~~~~~y~~~l~~~~~a~~~rl~w~~~~~~~~i~~e~~~~~~~~~~~~s~r~~~~~k 289 (310)
T KOG1161|consen 222 TDAAITTLYFDNSGSDLYSQFLLKSLLAEALRLRWYGKLSNDDIFVERKTHKEDWTGEKSARFQLKEK 289 (310)
T ss_pred chHHHHHHHHhccchHHHHHHhcccccchhhhhhhhcCCCccchhhhhhhhhcccccccceeeeeehH
Confidence 566778889999999999999999999999999999999 8999999999988888888887776
No 413
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.62 E-value=4.9e+02 Score=32.25 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHH-HHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 914 LLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINN-LNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 914 Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~-l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
|+ .++.+...+++.-+..|+.|.++++.|.+.-+..+..|.+ ++..-.....|.++|+++..-.-.+..++
T Consensus 64 lv-a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 64 LV-AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 414
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=22.55 E-value=8.5e+02 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHhHHHHH
Q psy16785 869 PEEIKIEYEKQMTNYKKLR 887 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR 887 (1642)
...+..+|+.+|.+.+.=.
T Consensus 58 a~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14473 58 LANAKRDYEAELAKARQEA 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888888776533
No 415
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=22.45 E-value=1.3e+03 Score=29.65 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=48.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHH
Q psy16785 910 AKNALLEA-KLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 983 (1642)
Q Consensus 910 akn~Llqr-~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFS 983 (1642)
||+.|+++ .+.+.+-+-..++.=++=-..++.+|+++...+..+|+.++.-|+....=...+..|+.-|-.-|.
T Consensus 408 ak~~l~~~f~~~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg 482 (742)
T PRK05561 408 PKANLMARFDLSEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFG 482 (742)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 67777643 133333333333333333345677888888888888888888888877777777777777776665
No 416
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.33 E-value=4.4e+02 Score=31.21 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=39.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhh-hHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCCh
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQL-KDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINL 993 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~-~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDL 993 (1642)
+..+.+..+.+.+.++++++.... ..+.++++++++..-+.-..++.+-.---|++|=++++| ++|.
T Consensus 41 I~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkkNGlyL~liLG-nVNV 108 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFLPKKNGLYLRLILG-NVNV 108 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCCCCcccceecc-cccc
Confidence 333344444555555555443222 234556666666666655666665554459999999999 4444
No 417
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.24 E-value=8.7e+02 Score=24.99 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHH
Q psy16785 852 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKL 886 (1642)
Q Consensus 852 ~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~L 886 (1642)
+..+..|.+.+....+ .+.+..||+++|...+.=
T Consensus 56 ~~I~~~l~~Ae~~~~e-a~~~~~e~e~~L~~A~~e 89 (156)
T CHL00118 56 EYIRKNLTKASEILAK-ANELTKQYEQELSKARKE 89 (156)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444443322 677888899888887753
No 418
>PF14182 YgaB: YgaB-like protein
Probab=22.14 E-value=2.7e+02 Score=27.53 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhh--hhhHHHHHHHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNI--QLKDDEINNLNEN 143 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeV--etk~dEi~~l~e~ 143 (1642)
.||+|++..++.+....+|+.+- ....+||.+++..
T Consensus 18 ~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~ 55 (79)
T PF14182_consen 18 FLQSELERCQEIEKELKELEREAELHSIQEEISQMKKE 55 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 68999999999999999887653 3344444444443
No 419
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.13 E-value=9.5e+02 Score=27.28 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 122 QILEMEKNIQLKDDEINNLNENLTSSL 148 (1642)
Q Consensus 122 ri~~LEkeVetk~dEi~~l~e~l~s~~ 148 (1642)
+...|+.+++.+..-|+.+-..+.+..
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666655555444
No 420
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.04 E-value=1.9e+02 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=28.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 126 MEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 126 LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
||.|-+.+...+..|..++...+.|+..|.+|+....
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777778888888888888888888888876554
No 421
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=22.01 E-value=1.5e+03 Score=27.66 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 937 KKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 937 Ee~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
..++.+|+++.+.+..||+.++.-++.-..-...+..++
T Consensus 404 ~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL 442 (445)
T cd00187 404 KLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEEL 442 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 445667777777777777777776665555444444443
No 422
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.95 E-value=1.5e+03 Score=29.28 Aligned_cols=121 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHH
Q psy16785 44 VEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL-------AKNALLEA-KLKEIQEEIQAQLEK 115 (1642)
Q Consensus 44 IE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiRle~-------~KndLeEa-Kl~e~~~elqaE~eK 115 (1642)
+..-+..|..=+++.++-+|.-...=..+-+=..++-. --+..|..++ +++.|.+. ++-+.|.+-..++.=
T Consensus 343 l~~~~~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~-~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l 421 (738)
T TIGR01061 343 LDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAIS-IIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRL 421 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHH
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHH
Q psy16785 116 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 165 (1642)
Q Consensus 116 ~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LF 165 (1642)
.+=-...+.+|+++...+..+|+.+++-|++-..=...+..|+..+-+-|
T Consensus 422 ~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kf 471 (738)
T TIGR01061 422 YRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQF 471 (738)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
No 423
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.89 E-value=2.4e+02 Score=27.68 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+.+|.|...+..-+.+++.++.-+.+++.+|-.-..-...|+.+.
T Consensus 5 ~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~ 49 (76)
T PF11544_consen 5 KQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQL 49 (76)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555554443
No 424
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.73 E-value=1.5e+02 Score=33.23 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 161 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~V 161 (1642)
-+..|+.+||.++.....++..|+.++.+.++++-.|=+.+--+
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999988887776544
No 425
>KOG3091|consensus
Probab=21.63 E-value=1.3e+03 Score=29.16 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhH-------HHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhc--
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD-------DEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI-- 987 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~-------dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLL-- 987 (1642)
.+|++.|+.+. +|..||.++.-+++.+. ..=+.|+++|....++...=+.=-+-|+.||+++=+
T Consensus 376 ~KI~~~k~r~~-------~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~ 448 (508)
T KOG3091|consen 376 AKIEEAKNRHV-------ELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQN 448 (508)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhc
Confidence 34455554444 67777777776666554 223455555555554443332222334555554433
Q ss_pred -----C--CCCChHHHHHHHH
Q psy16785 988 -----N--PMINLDMLIKLIQ 1001 (1642)
Q Consensus 988 -----G--~~iDLDrL~~lLE 1001 (1642)
+ =-+|.|+++.|++
T Consensus 449 ~~~~~~~~~~iD~~~~~e~~e 469 (508)
T KOG3091|consen 449 SQLKLQESYWIDFDKLIEMKE 469 (508)
T ss_pred chhccccceeechhhhHHHHH
Confidence 3 3467777777654
No 426
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.63 E-value=9.1e+02 Score=24.98 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 982 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LF 982 (1642)
...+++..|+.+++.++..+..+=+=||+-..+...|++-|.=|-.+|
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445555555555544444333333
No 427
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.61 E-value=9.3e+02 Score=25.08 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 973 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~ 973 (1642)
.+...+..+..++......+..+++++...+.++..+..
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~ 126 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRK 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444333333
No 428
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.31 E-value=1.1e+03 Score=26.00 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhccCch-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Q psy16785 851 VSDLKTRLKDVEKKLLESPE-----------EIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKL 919 (1642)
Q Consensus 851 v~qLK~kL~qIE~sL~Ers~-----------dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L 919 (1642)
+..|+.-|..|-++|...++ .+---...|+.=+-.+|+|++-|.|.+--.+.. +++.+
T Consensus 86 ~~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~-----------l~~ri 154 (246)
T cd07597 86 WGDINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQR-----------LLKRI 154 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHH-----------HHHHH
Confidence 45556666666655554411 112223346666778888999888777666666 33555
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 920 KEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 920 ~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
+..+..++.-.-+-..-...+++++..+.....+|.+.....-
T Consensus 155 ~~~~~kl~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~ 197 (246)
T cd07597 155 ELNKKKLESLRAKPDVKGAEVDKLEASIIKDKESIANQLNRSW 197 (246)
T ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5444444321111001123455555556555566655443333
No 429
>KOG2264|consensus
Probab=21.27 E-value=2.2e+02 Score=36.05 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=43.7
Q ss_pred hhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16785 1197 NHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNE 1267 (1642)
Q Consensus 1197 ~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeELEYCReKW~~AR~KN~ 1267 (1642)
.+|-.=++.||.||+.-=.---+|+-.-.++.|.-.-|+-.+-||..=|+.||.+.|-+....+.+|+.|.
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 34444467899999875444444555555555555555666666666666677777666666666666554
No 430
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.15 E-value=3.9e+02 Score=26.19 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL 957 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l 957 (1642)
+++...++.|.+=..+....+++..+|..+.+.+++=|.+|
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444555555555555555555555555444
No 431
>KOG2010|consensus
Probab=21.08 E-value=2.4e+02 Score=33.72 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHH
Q psy16785 97 LLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFS 166 (1642)
Q Consensus 97 LeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFS 166 (1642)
+--.|+.|+++-.+.-+=.|..|--.--.|.=+|.|++|+|+.+.+.|..+.-|++.+..++-..--..|
T Consensus 116 ~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s 185 (405)
T KOG2010|consen 116 LRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCS 185 (405)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555655555554444444444444567789999999999999999999999999988876554444
No 432
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.07 E-value=1.4e+03 Score=30.36 Aligned_cols=108 Identities=16% Similarity=0.284 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAA-ELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rva-ele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
-.|+.+|.++|.++|..+.. -+-...|-.=|..|++++ ..+. ++...+. ++++|++.-.++
T Consensus 512 aq~~~~lr~~l~eLEqr~~q------------Qqsa~~Ll~~f~kr~~~~l~ae~---lE~~~~e---~eal~E~ls~~~ 573 (1480)
T COG3096 512 AEQVQPLRMRLSELEQRLRQ------------QQSAERLLADFCKRQGKNLDAEE---LEALHQE---LEALIESLSDSV 573 (1480)
T ss_pred HHhhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhcccCCHHH---HHHHHHH---HHHHHHHHHHHH
Confidence 36889999999999887642 233344444566666652 0100 1111111 233344444444
Q ss_pred HHHHHHh-------HhHHHHHHHHHHhh---hhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 927 QAQLEKY-------KENKKQILEMEKNI---QLKDDEINNLNENLTSSLAENHILNS 973 (1642)
Q Consensus 927 qae~eK~-------KnlEe~i~~Le~dv---e~~~dEi~~l~e~l~~tkaE~r~L~~ 973 (1642)
...-+.- ++|...++++...- =++++-++.|.++-|..-++..+.-+
T Consensus 574 s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~ 630 (1480)
T COG3096 574 SNAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTE 630 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhhhhhcchHHHHH
Confidence 4433333 33444444444332 24678899999999988888776543
No 433
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.04 E-value=3.2e+02 Score=25.55 Aligned_cols=44 Identities=11% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHH
Q psy16785 122 QILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLF 165 (1642)
Q Consensus 122 ri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LF 165 (1642)
+|..|..+|++++..+.+|.+.+.....+-...++|-+=.|.=+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777666666533
No 434
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.79 E-value=7.9e+02 Score=23.95 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHhHHHHHH
Q psy16785 869 PEEIKIEYEKQMTNYKKLRE 888 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~LR~ 888 (1642)
.+.||.||+.+...+.+++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~ 25 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKH 25 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46789999999887776654
No 435
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=20.70 E-value=1.1e+03 Score=26.20 Aligned_cols=51 Identities=27% Similarity=0.450 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHH
Q psy16785 106 QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNS 156 (1642)
Q Consensus 106 ~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~a 156 (1642)
+.++++.++|-.-|+..-.+|-.--.++..-|..|.+++..-.-++..+..
T Consensus 112 ~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQd 162 (178)
T PF14073_consen 112 QSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQD 162 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999888888889999999988776666665544
No 436
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.64 E-value=9.8e+02 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHhHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES------PEEIKIEYEKQMTNYKKLRELY 890 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er------s~dLr~EYERQL~NIR~LR~LY 890 (1642)
+-.+=|..+=..|.+.+.+- .+.+..||+++|.+.+.=.+-.
T Consensus 40 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 87 (173)
T PRK13460 40 VILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAI 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433 6677888888888877644433
No 437
>KOG2398|consensus
Probab=20.58 E-value=1.8e+03 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHhHHHHHHHHhhcCCCCChHHHHHHHHHh
Q psy16785 973 SQMTLVNNLFSNMLINPMINLDMLIKLIQDN 1003 (1642)
Q Consensus 973 ~QM~lVN~LFSqmLLG~~iDLDrL~~lLEEN 1003 (1642)
+.|-..=.+|.+.+.++-+++|+.-.++..|
T Consensus 189 ~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~ 219 (611)
T KOG2398|consen 189 SFLKEELWLFANQISESCVKIDQVMEEFKLT 219 (611)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Confidence 3344444678888888888888888888877
No 438
>PLN02939 transferase, transferring glycosyl groups
Probab=20.08 E-value=2.3e+03 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHhccCchH
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLESPEE 871 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Ers~d 871 (1642)
-|.+.+-|..-|+++|.+|.....|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (977)
T PLN02939 262 LEKERSLLDASLRELESKFIVAQED 286 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3556667777888888888777333
No 439
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.07 E-value=5.4e+02 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=18.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 857 RLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 857 kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
....+..++..|--++ . .++-.|-.||++|..+
T Consensus 10 n~~~v~~~l~~R~~~~------~-~~vd~i~~ld~~~r~~ 42 (418)
T TIGR00414 10 NPDLVKESLKARGLSV------D-IDLEKLIALDDERKKL 42 (418)
T ss_pred CHHHHHHHHHhcCCCh------h-hhHHHHHHHHHHHHHH
Confidence 3445555566663111 0 1567777788776555
No 440
>smart00338 BRLZ basic region leucin zipper.
Probab=20.06 E-value=2.3e+02 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNEN 960 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~ 960 (1642)
.|+..+..|...|..+..|+..|..+
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
Done!