Query psy16785
Match_columns 1642
No_of_seqs 34 out of 36
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 22:02:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o0z_A RHO-associated protein 94.0 2.5 8.6E-05 43.6 17.4 124 848-984 12-136 (168)
2 3oja_B Anopheles plasmodium-re 93.8 0.49 1.7E-05 52.6 12.8 68 907-974 513-580 (597)
3 3vkg_A Dynein heavy chain, cyt 92.3 1.8 6.1E-05 59.0 17.1 43 120-162 2027-2069(3245)
4 3oja_B Anopheles plasmodium-re 92.2 1.2 4.1E-05 49.5 13.0 56 99-154 522-577 (597)
5 3o0z_A RHO-associated protein 91.7 4.6 0.00016 41.7 15.5 78 90-168 60-137 (168)
6 3vkg_A Dynein heavy chain, cyt 89.8 5.4 0.00018 54.6 17.8 128 848-979 1933-2069(3245)
7 3oja_A Leucine-rich immune mol 86.6 4.2 0.00015 44.6 11.7 44 116-159 444-487 (487)
8 1i84_S Smooth muscle myosin he 86.6 1.5 5.2E-05 54.1 9.2 16 582-597 662-677 (1184)
9 1i84_S Smooth muscle myosin he 85.9 2.1 7.1E-05 53.0 9.8 60 99-158 926-985 (1184)
10 2v71_A Nuclear distribution pr 85.8 36 0.0012 35.6 17.4 135 849-1012 17-155 (189)
11 3ol1_A Vimentin; structural ge 85.4 10 0.00035 36.4 12.3 72 869-952 11-83 (119)
12 3na7_A HP0958; flagellar bioge 85.3 14 0.00047 38.6 14.3 33 935-967 108-140 (256)
13 3ghg_A Fibrinogen alpha chain; 84.4 3.4 0.00011 48.7 10.0 132 853-988 50-195 (562)
14 2dfs_A Myosin-5A; myosin-V, in 84.1 6.8 0.00023 48.7 13.1 36 113-148 983-1018(1080)
15 2fxo_A Myosin heavy chain, car 84.0 24 0.00081 34.0 14.2 28 847-882 18-45 (129)
16 3na7_A HP0958; flagellar bioge 82.8 10 0.00034 39.6 11.9 8 1036-1043 205-212 (256)
17 3hnw_A Uncharacterized protein 80.6 38 0.0013 33.6 14.4 80 876-964 57-136 (138)
18 3hnw_A Uncharacterized protein 80.3 9.7 0.00033 37.7 10.2 82 887-975 51-133 (138)
19 2dfs_A Myosin-5A; myosin-V, in 79.7 14 0.00049 45.9 13.7 17 581-597 639-655 (1080)
20 2no2_A HIP-I, huntingtin-inter 78.8 45 0.0015 32.0 13.9 54 110-163 43-96 (107)
21 3ol1_A Vimentin; structural ge 75.6 34 0.0012 32.8 12.2 71 52-134 11-82 (119)
22 2fxo_A Myosin heavy chain, car 75.6 60 0.002 31.3 14.8 100 39-141 20-124 (129)
23 3oja_A Leucine-rich immune mol 75.1 26 0.00089 38.4 12.8 46 930-975 441-486 (487)
24 3ghg_A Fibrinogen alpha chain; 74.7 16 0.00056 43.1 11.5 92 849-951 64-158 (562)
25 2efr_A General control protein 74.7 66 0.0022 32.8 14.5 37 933-969 93-129 (155)
26 2v4h_A NF-kappa-B essential mo 74.1 13 0.00043 36.6 8.8 90 842-957 17-109 (110)
27 1m1j_B Fibrinogen beta chain; 69.8 72 0.0025 37.1 15.1 34 833-866 84-117 (464)
28 3nmd_A CGMP dependent protein 69.3 9.5 0.00032 35.2 6.4 40 108-147 27-66 (72)
29 3a7p_A Autophagy protein 16; c 66.7 26 0.00088 36.0 9.5 68 118-192 65-132 (152)
30 2no2_A HIP-I, huntingtin-inter 66.2 95 0.0033 29.8 13.7 60 917-979 36-95 (107)
31 1t2k_D Cyclic-AMP-dependent tr 64.9 39 0.0013 29.0 9.0 58 70-144 2-59 (61)
32 3c3g_A Alpha/beta peptide with 64.4 4 0.00014 33.2 2.6 27 1162-1188 3-29 (33)
33 3nmd_A CGMP dependent protein 63.7 15 0.00052 33.8 6.6 38 926-963 28-65 (72)
34 3a7p_A Autophagy protein 16; c 61.4 41 0.0014 34.5 9.8 65 939-1010 69-133 (152)
35 3trt_A Vimentin; cytoskeleton, 61.1 77 0.0026 27.8 10.4 22 936-957 54-75 (77)
36 3c3f_A Alpha/beta peptide with 60.6 5.1 0.00017 32.8 2.6 27 1162-1188 4-30 (34)
37 3mq9_A Bone marrow stromal ant 60.4 74 0.0025 34.7 12.5 13 390-402 31-43 (471)
38 3efg_A Protein SLYX homolog; x 60.2 15 0.00053 33.5 6.0 48 933-980 9-56 (78)
39 3efg_A Protein SLYX homolog; x 58.9 15 0.00051 33.6 5.7 48 116-163 9-56 (78)
40 3swk_A Vimentin; cytoskeleton, 58.4 86 0.0029 28.9 10.6 55 915-969 26-80 (86)
41 1t2k_D Cyclic-AMP-dependent tr 58.2 58 0.002 27.9 8.9 31 931-961 29-59 (61)
42 1wt6_A Myotonin-protein kinase 57.1 33 0.0011 32.3 7.7 49 909-958 24-72 (81)
43 3mq9_A Bone marrow stromal ant 56.5 1.2E+02 0.0041 33.2 13.2 8 566-573 141-148 (471)
44 3u1c_A Tropomyosin alpha-1 cha 56.4 1.3E+02 0.0045 28.2 13.5 27 936-962 42-68 (101)
45 2bni_A General control protein 56.3 6.6 0.00023 32.1 2.6 27 1162-1188 4-30 (34)
46 1kd8_A GABH AIV, GCN4 acid bas 55.9 11 0.00039 31.1 3.9 31 1162-1192 4-34 (36)
47 3jsv_C NF-kappa-B essential mo 55.9 29 0.001 33.3 7.3 89 850-961 3-91 (94)
48 3cve_A Homer protein homolog 1 55.3 44 0.0015 30.7 8.0 50 926-975 9-65 (72)
49 3u59_A Tropomyosin beta chain; 55.0 1.3E+02 0.0046 27.9 13.5 6 974-979 87-92 (101)
50 3cvf_A Homer-3, homer protein 53.9 24 0.00083 32.8 6.2 50 926-975 15-71 (79)
51 2wt7_A Proto-oncogene protein 53.7 80 0.0028 27.4 9.1 32 115-146 31-62 (63)
52 1f5n_A Interferon-induced guan 53.0 84 0.0029 37.0 12.0 45 70-126 487-531 (592)
53 3bas_A Myosin heavy chain, str 52.9 1.2E+02 0.0042 27.8 10.7 66 915-980 19-84 (89)
54 1kd8_B GABH BLL, GCN4 acid bas 52.7 9.5 0.00033 31.5 2.9 29 1162-1190 4-32 (36)
55 2v71_A Nuclear distribution pr 52.7 2.3E+02 0.0078 29.8 13.9 33 935-967 53-85 (189)
56 2jee_A YIIU; FTSZ, septum, coi 52.2 1.2E+02 0.0039 28.6 10.4 56 926-981 15-70 (81)
57 1ic2_A Tropomyosin alpha chain 51.7 1E+02 0.0035 27.7 9.8 27 936-962 39-65 (81)
58 3u1c_A Tropomyosin alpha-1 cha 51.6 90 0.0031 29.3 9.8 34 929-962 21-54 (101)
59 3hhm_B NISH2 P85alpha; PI3KCA, 50.1 3.1E+02 0.011 30.7 15.5 64 121-184 205-278 (373)
60 3tnu_B Keratin, type II cytosk 49.7 1.1E+02 0.0039 29.3 10.4 28 917-944 43-70 (129)
61 3hhm_B NISH2 P85alpha; PI3KCA, 49.4 3E+02 0.01 30.8 15.2 44 936-979 203-246 (373)
62 2r2v_A GCN4 leucine zipper; co 49.1 10 0.00035 31.1 2.6 26 1163-1188 5-30 (34)
63 3uul_A Utrophin; spectrin repe 48.9 79 0.0027 27.7 8.6 63 924-986 36-98 (118)
64 3trt_A Vimentin; cytoskeleton, 48.8 1.4E+02 0.0047 26.2 10.3 12 53-64 12-23 (77)
65 3he5_B Synzip2; heterodimeric 48.5 45 0.0015 28.8 6.5 47 910-964 3-50 (52)
66 2wq1_A General control protein 48.0 11 0.00037 30.8 2.6 26 1163-1188 4-29 (33)
67 2jee_A YIIU; FTSZ, septum, coi 47.9 1E+02 0.0034 29.0 9.3 38 98-135 11-48 (81)
68 3tnu_A Keratin, type I cytoske 47.8 1.2E+02 0.0041 29.2 10.3 29 917-945 45-73 (131)
69 1wt6_A Myotonin-protein kinase 46.3 20 0.00069 33.8 4.4 37 1170-1206 21-57 (81)
70 1jnm_A Proto-oncogene C-JUN; B 44.9 47 0.0016 28.6 6.3 32 115-146 30-61 (62)
71 3m48_A General control protein 44.8 13 0.00045 30.3 2.6 26 1163-1188 4-29 (33)
72 1deq_A Fibrinogen (alpha chain 44.6 1.4E+02 0.0047 34.4 11.6 30 939-968 135-164 (390)
73 3uul_A Utrophin; spectrin repe 44.5 93 0.0032 27.3 8.3 62 108-169 37-98 (118)
74 2wt7_A Proto-oncogene protein 44.4 1.3E+02 0.0046 26.0 9.1 33 931-963 30-62 (63)
75 2efr_A General control protein 44.2 2.8E+02 0.0094 28.3 15.3 45 932-976 85-129 (155)
76 2oxj_A Hybrid alpha/beta pepti 44.0 17 0.00057 29.9 3.0 27 1162-1188 4-30 (34)
77 1uo4_A General control protein 43.7 14 0.00047 30.3 2.6 27 1162-1188 4-30 (34)
78 1deq_A Fibrinogen (alpha chain 43.5 2.8E+02 0.0094 32.0 13.7 40 915-954 118-157 (390)
79 3qh9_A Liprin-beta-2; coiled-c 43.1 1.1E+02 0.0037 29.0 8.7 30 933-962 49-78 (81)
80 3cve_A Homer protein homolog 1 42.9 1.4E+02 0.0047 27.6 9.2 53 911-963 15-67 (72)
81 2hy6_A General control protein 41.3 20 0.00067 29.5 3.1 27 1162-1188 4-30 (34)
82 1gd2_E Transcription factor PA 41.2 89 0.003 28.4 7.7 59 907-971 11-69 (70)
83 3s4r_A Vimentin; alpha-helix, 41.1 1E+02 0.0036 28.7 8.4 58 919-976 11-80 (93)
84 3uun_A Dystrophin; triple heli 41.1 1.4E+02 0.0046 26.1 8.8 61 925-985 37-97 (119)
85 1ci6_A Transcription factor AT 40.4 70 0.0024 28.0 6.7 30 115-144 31-60 (63)
86 4etp_A Kinesin-like protein KA 40.4 37 0.0013 38.0 6.3 45 931-975 10-54 (403)
87 4h22_A Leucine-rich repeat fli 40.2 1E+02 0.0035 30.1 8.3 59 917-975 19-81 (103)
88 1m1j_B Fibrinogen beta chain; 38.5 4.1E+02 0.014 31.0 14.4 16 37-52 98-113 (464)
89 3cvf_A Homer-3, homer protein 38.3 1.7E+02 0.0058 27.3 9.2 54 911-964 21-74 (79)
90 2b9c_A Striated-muscle alpha t 37.6 3.3E+02 0.011 27.3 13.0 19 850-868 18-36 (147)
91 3bas_A Myosin heavy chain, str 37.4 1.8E+02 0.0062 26.7 9.3 60 103-162 24-83 (89)
92 2e7s_A RAB guanine nucleotide 37.1 1.2E+02 0.0042 30.6 8.7 48 845-902 21-68 (135)
93 1wle_A Seryl-tRNA synthetase; 36.0 1.8E+02 0.0062 33.8 11.1 22 1131-1153 297-319 (501)
94 3mq7_A Bone marrow stromal ant 35.6 3.3E+02 0.011 27.3 11.2 76 897-979 19-105 (121)
95 3uun_A Dystrophin; triple heli 35.3 1.7E+02 0.0059 25.4 8.6 62 108-169 37-98 (119)
96 1m1j_A Fibrinogen alpha subuni 33.8 3.3E+02 0.011 32.2 12.6 23 938-960 132-154 (491)
97 3ghg_C Fibrinogen gamma chain; 32.7 1.6E+02 0.0054 33.9 9.8 57 822-896 18-74 (411)
98 1m1j_C Fibrinogen gamma chain; 32.7 5E+02 0.017 29.7 13.8 34 930-963 83-116 (409)
99 1f5n_A Interferon-induced guan 32.2 3.9E+02 0.013 31.5 13.2 11 564-574 194-204 (592)
100 4etp_A Kinesin-like protein KA 31.4 62 0.0021 36.3 6.2 47 112-158 8-54 (403)
101 3iox_A AGI/II, PA; alpha helix 31.3 7.3E+02 0.025 29.5 14.9 29 134-162 72-100 (497)
102 1jnm_A Proto-oncogene C-JUN; B 30.9 54 0.0018 28.3 4.4 32 931-962 29-60 (62)
103 2ocy_A RAB guanine nucleotide 30.2 4.7E+02 0.016 26.8 13.4 13 888-900 66-78 (154)
104 1gd2_E Transcription factor PA 29.8 46 0.0016 30.2 3.9 37 118-154 33-69 (70)
105 3qh9_A Liprin-beta-2; coiled-c 29.6 2.2E+02 0.0075 27.0 8.4 41 935-975 37-77 (81)
106 1lwu_C Fibrinogen gamma chain; 28.9 68 0.0023 35.6 5.9 38 930-967 4-41 (323)
107 1m1j_C Fibrinogen gamma chain; 28.9 2E+02 0.0067 32.9 9.7 29 933-961 100-128 (409)
108 1ci6_A Transcription factor AT 28.5 1.2E+02 0.004 26.6 6.1 36 926-961 25-60 (63)
109 3q8t_A Beclin-1; autophagy, AT 27.6 2.5E+02 0.0087 26.3 8.7 85 1165-1263 10-94 (96)
110 3ghg_B Fibrinogen beta chain; 26.3 3.3E+02 0.011 31.9 11.0 100 848-969 94-194 (461)
111 1kd8_B GABH BLL, GCN4 acid bas 25.8 50 0.0017 27.4 3.1 33 934-966 4-36 (36)
112 2xnx_M M protein, M1-BC1; cell 25.2 3.6E+02 0.012 27.7 9.8 52 103-154 69-120 (146)
113 2dq0_A Seryl-tRNA synthetase; 25.0 2.2E+02 0.0074 32.5 9.2 15 882-896 29-43 (455)
114 2iw5_B Protein corest, REST co 24.0 1.3E+02 0.0044 32.7 6.7 74 1167-1244 87-181 (235)
115 2ke4_A CDC42-interacting prote 23.8 4.7E+02 0.016 24.8 10.4 69 93-162 16-89 (98)
116 3u59_A Tropomyosin beta chain; 23.7 4.4E+02 0.015 24.4 13.6 45 119-163 49-93 (101)
117 3htk_A Structural maintenance 23.6 2.6E+02 0.0089 23.3 7.3 28 934-961 29-56 (60)
118 2p22_C Protein SRN2; endosome, 23.5 6.4E+02 0.022 26.2 12.9 85 915-1010 84-176 (192)
119 3iox_A AGI/II, PA; alpha helix 22.0 1E+03 0.036 28.2 15.4 28 951-978 72-99 (497)
120 3ghg_B Fibrinogen beta chain; 21.8 4.3E+02 0.015 31.0 10.8 44 36-83 92-135 (461)
121 2dgc_A Protein (GCN4); basic d 21.7 1.1E+02 0.0037 27.0 4.7 32 931-962 30-61 (63)
122 1uii_A Geminin; human, DNA rep 21.7 2E+02 0.0068 27.3 6.7 30 113-142 45-74 (83)
123 2z5i_A TM, general control pro 21.5 1.8E+02 0.006 25.1 5.8 29 915-943 17-45 (52)
124 4dnd_A Syntaxin-10, SYN10; str 21.2 4E+02 0.014 26.1 9.1 24 952-975 105-128 (130)
125 3tnu_A Keratin, type I cytoske 20.8 5.6E+02 0.019 24.6 11.5 9 919-927 93-101 (131)
126 1ik9_A DNA repair protein XRCC 20.7 2.3E+02 0.0077 29.8 7.6 51 108-158 126-176 (213)
127 1ses_A Seryl-tRNA synthetase; 20.4 2.2E+02 0.0075 32.0 8.0 14 883-896 27-40 (421)
128 3nr7_A DNA-binding protein H-N 20.4 2.9E+02 0.0099 25.8 7.5 81 875-965 6-86 (86)
129 2v4h_A NF-kappa-B essential mo 20.2 95 0.0032 30.6 4.4 10 952-961 90-99 (110)
130 3u06_A Protein claret segregat 20.2 1.6E+02 0.0056 33.2 7.0 41 935-975 14-54 (412)
131 3vjf_A WA20; protein design, d 20.1 5.5E+02 0.019 24.3 9.2 68 126-194 5-72 (102)
132 3qne_A Seryl-tRNA synthetase, 20.0 2.5E+02 0.0087 32.6 8.6 14 883-896 32-45 (485)
No 1
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.99 E-value=2.5 Score=43.61 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~-LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eL 926 (1642)
|.|+.++..+|+. |.--..|.--.-.||.+++...-. +|+| .+|.+.....+.. |++++...+-.|
T Consensus 12 ekQL~E~n~kLk~-EsE~~~rlkK~~tEl~k~~~~~E~~~rEL-q~~~~~L~~~k~~-----------Leke~~~LQa~L 78 (168)
T 3o0z_A 12 QKQLEEANDLLRT-ESDTAVRLRKSHTEMSKSISQLESLNREL-QERNRILENSKSQ-----------TDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 5677777777764 333334444445577777665543 2333 2333444444444 566666666666
Q ss_pred HHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHH
Q psy16785 927 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSN 984 (1642)
Q Consensus 927 qae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSq 984 (1642)
..|..-..-..+.+..|+..|..+..|++.+...+....+|++.|+.-++-+=.--+.
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666788899999999999999999999999999999999999887765554443
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.76 E-value=0.49 Score=52.56 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHH
Q psy16785 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQ 974 (1642)
Q Consensus 907 ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~Q 974 (1642)
+...+.+-+++++...++..++.+++++.+++++..+++.++.+++.+..++.+.....++..+|...
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777778888888888888888888888888888888888888777777776654
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.33 E-value=1.8 Score=58.99 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 120 KKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 120 eeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
+.+++..+..++.+++.|+.+++++.....|+..|+.+|..+.
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666667777776666543
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.16 E-value=1.2 Score=49.47 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 99 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 99 EaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
+.++.+.++..++.+++++.++..+..|++.++.+++.+..++.+......|..+|
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666666666666666666666555555554444433
No 5
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.67 E-value=4.6 Score=41.70 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 90 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 90 le~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
+...|..| +.-+..+|..|..|..--.-..+.+..|+..|+.+..|++.++..++....|++.|..-+.-+=+--+.+
T Consensus 60 L~~~k~~L-eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 60 LENSKSQT-DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444 4556678888888888888899999999999999999999999999999999999999887766655543
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.76 E-value=5.4 Score=54.60 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhHhhh-HHHHH-HHHHHHHHHHHH---
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAA-AAELEHKTM-IEKEL-AKNALLEAKLKE--- 921 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~R-vaele~e~~-i~ke~-akn~Llqr~L~e--- 921 (1642)
..||++||.+|.+.+..|.+.. .|.++-|+.|-.=.+--++... |.+.+.... +.++. ++.+-.+++|++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~----~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~P 2008 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKN----EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEP 2008 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4678888888888888777653 3334444444332222222211 111111110 00000 011112222222
Q ss_pred ---HHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 922 ---IQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 922 ---~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
++++|..-.++.+..+++++.++..+..+++.++.|++++....+|+..|+.+|..+.
T Consensus 2009 a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333444445555556666666666666666666666777777777766544
No 7
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.58 E-value=4.2 Score=44.56 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH
Q psy16785 116 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159 (1642)
Q Consensus 116 ~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~ 159 (1642)
.+.+++..++++++++..+..|+..++.|-...--...|.+|+|
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 34455556666666666666666666666555555555655543
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.57 E-value=1.5 Score=54.12 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhcccc
Q psy16785 582 LEDQCKNLFHKMSLTS 597 (1642)
Q Consensus 582 leeq~~~l~~km~~t~ 597 (1642)
.-.|...||..++.|+
T Consensus 662 f~~~l~~L~~~l~~t~ 677 (1184)
T 1i84_S 662 YKEQLTKLMTTLRNTN 677 (1184)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3355666666666554
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.86 E-value=2.1 Score=52.96 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 99 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 99 EaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
+.+++++++++....+....++..+..++.+++.+..+++.++..+.....+...+..++
T Consensus 926 e~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l 985 (1184)
T 1i84_S 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985 (1184)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666665555555555544443
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.81 E-value=36 Score=35.63 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYK-KLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQE 924 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR-~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~ 924 (1642)
..+.+++.++.+++.-|.+= |..|-.|.|++|.=.. .+++| +.+++. |..++...|.
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L---~~~~~~----------------L~~E~e~~k~ 77 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDL---QADNQR----------------LKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------------HHHHHHHHHH
Confidence 35667777888888776654 8888888888875321 12221 112222 3233333333
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhH
Q psy16785 925 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNY 1004 (1642)
Q Consensus 925 eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr 1004 (1642)
+++... .+....+..|++++..+..+..++...|...--.+-+|..+--+...-+.-| =.||.+.|+.|.
T Consensus 78 K~~~~~---~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~-------e~kln~aiEr~a 147 (189)
T 2v71_A 78 KLEHQY---AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDF-------EQRLNQAIERNA 147 (189)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH-------HHHHHHHHHHHH
Confidence 333221 1223346677777777777777777777766666666666665555544433 248899999999
Q ss_pred HHHHHHhh
Q psy16785 1005 LLIIDLIN 1012 (1642)
Q Consensus 1005 ~LL~dMt~ 1012 (1642)
-|=+++--
T Consensus 148 lLE~El~E 155 (189)
T 2v71_A 148 FLESELDE 155 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888843
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.35 E-value=10 Score=36.38 Aligned_cols=72 Identities=15% Similarity=0.341 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhh
Q psy16785 869 PEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNI 947 (1642)
Q Consensus 869 s~dLr~EYERQL~NIR~-LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dv 947 (1642)
+.+++.=|+..|.+.|. |-.+--+|+++ .++..+ ++..+++.|...+.++.+...+|..+..|.++|
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l-~leldn-----------~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARV-EVERDN-----------LAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 34455667777666553 34444455544 233344 445567777777777777777777777777777
Q ss_pred hhhHH
Q psy16785 948 QLKDD 952 (1642)
Q Consensus 948 e~~~d 952 (1642)
+...-
T Consensus 79 D~~~l 83 (119)
T 3ol1_A 79 DNASL 83 (119)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 65443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.30 E-value=14 Score=38.57 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE 967 (1642)
.+++.+..+...++.+..+++.+++.+...+++
T Consensus 108 ~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~ 140 (256)
T 3na7_A 108 QANREIENLQNEIKRKSEKQEDLKKEMLELEKL 140 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.43 E-value=3.4 Score=48.65 Aligned_cols=132 Identities=10% Similarity=0.137 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHH----H---HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELY----E---QRAAAAELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 853 qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LY----E---ER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
+||.-|-.-|.-|..|-++||.+|+.=-.|-+..-++| + +|+..+. ..+| .-.|++ .=|+|.+..+|.+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdN-tynE~S--~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDN-TYNRVS--EDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHH-HHHHTT--HHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccch-hHHHHH--HHHHHHHHHHHHH
Confidence 35555666666666667777777776655554443333 2 3333332 2222 111111 1256777777777
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh-------cHHHHHHhHHHHhHHHHHHHHhhcC
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS-------SLAENHILNSQMTLVNNLFSNMLIN 988 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~-------tkaE~r~L~~QM~lVN~LFSqmLLG 988 (1642)
++.++...+.|+..|..+-.+++.+.--|.-.-.-|.- .+-+...+.++=--+.++.++=|+-
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCC
Confidence 87777665666655555555555554333222222211 1224455555555566777777766
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.09 E-value=6.8 Score=48.69 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSL 148 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~ 148 (1642)
.++-++|++.+++|+++++.+..|.+.+++.+...+
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.02 E-value=24 Score=34.04 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHh
Q psy16785 847 ILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTN 882 (1642)
Q Consensus 847 rE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~N 882 (1642)
+++.+..|+.+|...+ ..|.||+.+++.
T Consensus 18 ~~eel~~lke~l~k~e--------~~r~ele~~~~~ 45 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSE--------ARRKELEEKMVS 45 (129)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 4455555555554444 345556555433
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.75 E-value=10 Score=39.61 Aligned_cols=8 Identities=13% Similarity=0.301 Sum_probs=4.6
Q ss_pred hhhhhHHH
Q psy16785 1036 AIQNDKQL 1043 (1642)
Q Consensus 1036 aa~LPKlL 1043 (1642)
...||...
T Consensus 205 ~~~lppq~ 212 (256)
T 3na7_A 205 FIRLNDKI 212 (256)
T ss_dssp CCBCCHHH
T ss_pred CeeeCHHH
Confidence 34566665
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.61 E-value=38 Score=33.57 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=59.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHH
Q psy16785 876 YEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEIN 955 (1642)
Q Consensus 876 YERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~ 955 (1642)
.--=|.=++-.-+||..+.....++.+- .-+.+++...|.+|..-+.|+.++++.+.+|.+++..++.++.
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l---------~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDI---------ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666777777777777666544 1135777888888888888888888888888888888888888
Q ss_pred HHHHHhhhc
Q psy16785 956 NLNENLTSS 964 (1642)
Q Consensus 956 ~l~e~l~~t 964 (1642)
.|+.++..+
T Consensus 128 ~le~~~~~~ 136 (138)
T 3hnw_A 128 KLETELNDS 136 (138)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 887776554
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.27 E-value=9.7 Score=37.71 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHHHHHHHHH-HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcH
Q psy16785 887 RELYEQRAAA-AELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSL 965 (1642)
Q Consensus 887 R~LYEER~Rv-aele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tk 965 (1642)
+.|=.+|..| +++----+.-+...+..-|+.++++...++. .|+.++..++.+++.+..+++.+++++...+
T Consensus 51 ~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~-------~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 51 RRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIY-------DLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555 4443333333333333334344444333333 4444444444444444455555555554444
Q ss_pred HHHHHhHHHH
Q psy16785 966 AENHILNSQM 975 (1642)
Q Consensus 966 aE~r~L~~QM 975 (1642)
-+...|+.++
T Consensus 124 ~~~~~le~~~ 133 (138)
T 3hnw_A 124 KNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.70 E-value=14 Score=45.88 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhcccc
Q psy16785 581 RLEDQCKNLFHKMSLTS 597 (1642)
Q Consensus 581 rleeq~~~l~~km~~t~ 597 (1642)
..-.|...||..++.|+
T Consensus 639 ~fk~sL~~Lm~~L~~t~ 655 (1080)
T 2dfs_A 639 QFRNSLHLLMETLNATT 655 (1080)
T ss_dssp HHHHHHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34568888999888775
No 20
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=78.81 E-value=45 Score=32.00 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=47.4
Q ss_pred HHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHH
Q psy16785 110 QAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 163 (1642)
Q Consensus 110 qaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~ 163 (1642)
+....|.++-...+..|..+++.+++|+..++..+..+..+.-.+.++++.|-.
T Consensus 43 ~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 43 DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888999999999999999999999999999999999999877644
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.59 E-value=34 Score=32.84 Aligned_cols=71 Identities=14% Similarity=0.345 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy16785 52 PEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNI 130 (1642)
Q Consensus 52 ~~DLR~EYEKQL~NIR~-LRqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeV 130 (1642)
+.++..=|+..|.+.|. |-.+--+|+++ .++..++.. +++.-|. ....|+.+...++..+..|-++|
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l-~leldn~~~------~~edfk~-----KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARV-EVERDNLAE------DIMRLRE-----KLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHH-----hhHHHHHHHHHHHHHHHHhhhcc
Confidence 34566678887766653 33444444443 234444333 3333222 33345555555555555555554
Q ss_pred hhhH
Q psy16785 131 QLKD 134 (1642)
Q Consensus 131 etk~ 134 (1642)
+.+.
T Consensus 79 D~~~ 82 (119)
T 3ol1_A 79 DNAS 82 (119)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 4433
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.55 E-value=60 Score=31.29 Aligned_cols=100 Identities=19% Similarity=0.227 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 39 TRLKDVEKKLLESPEEIKIEYEKQMTNYKKL-----RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQL 113 (1642)
Q Consensus 39 ~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~L-----RqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~ 113 (1642)
..++.++..|. .....|.+|+.+++.+.+= -+|--|+.-++.++ +..-++...|.+| |.|++++++.+..+-
T Consensus 20 eel~~lke~l~-k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E-E~~~~L~~~k~eL-e~~l~el~~rleeee 96 (129)
T 2fxo_A 20 EEFTRLKEALE-KSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE-ERCDQLIKNKIQL-EAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44444444443 2224456666655443321 23444555544432 3334455566654 477888887777777
Q ss_pred HHhhhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 114 EKYKENKKQILEMEKNIQLKDDEINNLN 141 (1642)
Q Consensus 114 eK~K~leeri~~LEkeVetk~dEi~~l~ 141 (1642)
+.+..|...-.+|+.+++.+...|..+.
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776666666554
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.11 E-value=26 Score=38.42 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
++..+.++++.+++++.++..+..|...++.|-...-....|.+|+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhc
Confidence 3334445555555555555555555555555544444444444443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.73 E-value=16 Score=43.14 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHhccC---chHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16785 849 PLVSDLKTRLKDVEKKLLES---PEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEE 925 (1642)
Q Consensus 849 ~Qv~qLK~kL~qIE~sL~Er---s~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~e 925 (1642)
..+++||++|.+|.++-.+- ...+..+..+.+.+..++..-|.|-.. +|++.-. -|++++......
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~--ELRRrIq---------yLKekVdnQlsn 132 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSE--DLRSRIE---------VLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTH--HHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH--HHHHHHH---------HHHHHHHHHHHH
Confidence 35788888888886665555 334444444455555566666655332 3333221 144444444444
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKD 951 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~ 951 (1642)
|++=+.-..++-..|++||.||+.+-
T Consensus 133 IrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555577778888888888775
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=74.70 E-value=66 Score=32.80 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=15.1
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
...-+..+.+|++.|+.+.+++..-+.++.....+..
T Consensus 93 AE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 93 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333333
No 26
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.11 E-value=13 Score=36.60 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=60.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhccCc---hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q psy16785 842 TTRSVILPLVSDLKTRLKDVEKKLLESP---EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAK 918 (1642)
Q Consensus 842 ~trsvrE~Qv~qLK~kL~qIE~sL~Ers---~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~ 918 (1642)
.+-.++.-+++.|+.+|..-|..|.+.- +.|++|-.+ +-+.+| ...+|+.+
T Consensus 17 ~~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q----------------~~~~lE----------~I~vLkaQ 70 (110)
T 2v4h_A 17 RGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ----------------HKIVME----------TVPVLKAQ 70 (110)
T ss_dssp TTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHT----------HHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHH----------HHHHHHHH
Confidence 3445777899999999999999998752 222221111 111222 24478888
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHH
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL 957 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l 957 (1642)
.+.-+.+..+|-.--..+..++..|+.++..++.++..|
T Consensus 71 v~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 71 ADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 888888888888777777777777777777666655443
No 27
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=69.82 E-value=72 Score=37.07 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred CCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q psy16785 833 TPPESNILATTRSVILPLVSDLKTRLKDVEKKLL 866 (1642)
Q Consensus 833 t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~ 866 (1642)
|=.....|.....-.+.++++||.+|.+|+++-.
T Consensus 84 tC~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 84 GCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTST 117 (464)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhh
Confidence 3445666666555566778889998888876643
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.31 E-value=9.5 Score=35.17 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 147 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~ 147 (1642)
.|+.-.+.-...+++|..|++.++.++++|..|+.+|-..
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344445566778888888888888888888887543
No 29
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.71 E-value=26 Score=35.95 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHH
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIID 192 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~d 192 (1642)
.....|..|++++..+...|.++.+.+..-..-...++.++.+.|.=|+.+ -+++.++=+||..|+.-
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l-------E~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL-------QQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777777777777777888888877777665 47888888999887764
No 30
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.20 E-value=95 Score=29.77 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
.++..++ +....|.++--..+..|..+++..++|+..++..+..+..+.-.|..+++-|-
T Consensus 36 ~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 36 DSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 44556677777888889999999999999999999999888888888876553
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.92 E-value=39 Score=29.01 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 70 RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENL 144 (1642)
Q Consensus 70 RqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l 144 (1642)
|+-|-+|-|+|+..--. .|+. .+..=..+.+.|+..+..|..+|+.+..|+..|+..+
T Consensus 2 R~~r~erNr~AA~k~R~------rKk~-----------~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQ------KRKV-----------WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHH------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566788888765421 1222 1111223456677777777777777777777776654
No 32
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=64.40 E-value=4 Score=33.22 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
+|-=-|+.+||-+|.+|..|++|||.|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344558899999999999999999986
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.65 E-value=15 Score=33.82 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=26.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
|+...+.....++.|..|++.++.++++|..|+.+|-.
T Consensus 28 L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 28 LQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344466777888888888888888888877743
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=61.38 E-value=41 Score=34.54 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcCCCCChHHHHHHHHHhHHHHHHH
Q psy16785 939 QILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 939 ~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
.|..|++++..+..+|.++++.+..-......|+.+|...|.=|+.+ -+++.++=+||..|+.-.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l-------E~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL-------QQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555544 378888888898888765
No 35
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=61.09 E-value=77 Score=27.77 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q psy16785 936 NKKQILEMEKNIQLKDDEINNL 957 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l 957 (1642)
.+.+|.+|...|+.+..||..+
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444443
No 36
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.63 E-value=5.1 Score=32.78 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
+|-=-|..+||-+|.+|..|++|||.|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445568899999999999999999976
No 37
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.40 E-value=74 Score=34.74 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhh
Q psy16785 390 WGYLARLRLQIKC 402 (1642)
Q Consensus 390 qe~~~~lR~EFar 402 (1642)
...++.+=.+|..
T Consensus 31 ~~~~~~~i~~Fe~ 43 (471)
T 3mq9_A 31 YNGLAEVGKKFEK 43 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhh
Confidence 3557777777765
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.16 E-value=15 Score=33.53 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=41.0
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHH
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 980 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~ 980 (1642)
-..++.+|..||.++.-+.+-|+.|+..+..-+.+...|+.+|.++-.
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999988888888876543
No 39
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.88 E-value=15 Score=33.62 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHH
Q psy16785 116 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 163 (1642)
Q Consensus 116 ~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~ 163 (1642)
...++.||..||..+.-..+.|+.||..+...+.+...|..+|..+-.
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999988876543
No 40
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.43 E-value=86 Score=28.90 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
++..++..|...+.|+.+-...|..+..|.++|+.+.--...|+.++.+.+.|..
T Consensus 26 ~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 26 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566888999999999999999999999999999988777778777776666544
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.22 E-value=58 Score=27.90 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
.+.+.|+..+..|..+|..+..|+..|...|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777776654
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.08 E-value=33 Score=32.32 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHH
Q psy16785 909 LAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN 958 (1642)
Q Consensus 909 ~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~ 958 (1642)
+||.++- .+|.-++...++-+.|.++.+.++.+|+.+++.++.+++.|+
T Consensus 24 qAKQ~i~-EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 24 LTRQSLS-REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565544 888999999998888888888888888888877777777654
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.50 E-value=1.2e+02 Score=33.16 Aligned_cols=8 Identities=50% Similarity=0.380 Sum_probs=4.2
Q ss_pred CCHHHHHH
Q psy16785 566 RTPEEILE 573 (1642)
Q Consensus 566 rtpee~l~ 573 (1642)
.|-+|+++
T Consensus 141 ~Twdel~~ 148 (471)
T 3mq9_A 141 KTWEEIPA 148 (471)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 45555554
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.36 E-value=1.3e+02 Score=28.17 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
.+..|..|.+.++.+.+++..+++.|.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 45
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=56.29 E-value=6.6 Score=32.13 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
+|.==|+..|+-+|.+|..|++|||.|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 444568899999999999999999986
No 46
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.91 E-value=11 Score=31.11 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHHHHHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTLNNHL 1192 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtLN~HL 1192 (1642)
+|-=-|..+||.+|.+|..|++|||.|+..-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 4555688999999999999999999987643
No 47
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=55.88 E-value=29 Score=33.33 Aligned_cols=89 Identities=19% Similarity=0.267 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 850 LVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 929 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae 929 (1642)
|+..|+.+|...|..|.....+ |..|++ ..+.++ +.+-...+|+.+.++-+.+..+|
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~-----------id~lke------~~~q~~------~~~E~i~vLk~Qv~IY~~DF~aE 59 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQEL-----------IDKLKE------EAEQHK------IVMETVPVLKAQADIYKADFQAE 59 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHH-----------HHHHHH------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999874221 222222 111111 11123457888888888888888
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
-.--..+..+...|...+..++.++.+|+..+
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777776666666666665544
No 48
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.33 E-value=44 Score=30.73 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhH-------HHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKD-------DEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~-------dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
||+--.+|.+||++|..|+.+++..+ .|+.++-+.|..-..|..+|...|
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444444444333 344444444444444444444433
No 49
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.97 E-value=1.3e+02 Score=27.85 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.7
Q ss_pred HHhHHH
Q psy16785 974 QMTLVN 979 (1642)
Q Consensus 974 QM~lVN 979 (1642)
+|..+|
T Consensus 87 evasLn 92 (101)
T 3u59_A 87 EVASLN 92 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.94 E-value=24 Score=32.82 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhH-------HHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKD-------DEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~-------dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
||+--.+|.+||++|..|+.+++..+ .|+.++-+.|.....|.++|...|
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444445555555555555444333 344444444444444444444433
No 51
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.66 E-value=80 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=22.2
Q ss_pred HhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 115 KYKENKKQILEMEKNIQLKDDEINNLNENLTS 146 (1642)
Q Consensus 115 K~K~leeri~~LEkeVetk~dEi~~l~e~l~s 146 (1642)
+...|+..+..|..+|+.+..|+.+|+.-+..
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777777766554
No 52
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.98 E-value=84 Score=36.98 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16785 70 RELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEM 126 (1642)
Q Consensus 70 RqLYEERaRaAa~e~e~LiRle~~KndLeEaKl~e~~~elqaE~eK~K~leeri~~L 126 (1642)
+++-+||+++.+++.++ .+++.|.++.+.-++++. +.+++++..|
T Consensus 487 k~~~~~~~~~e~~~~~~---------~~l~~~~~~~~~~~~~~~---~~~~e~~~ql 531 (592)
T 1f5n_A 487 KEIEVERVKAESAQASA---------KMLHEMQRKNEQMMEQKE---RSYQEHLKQL 531 (592)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45666777777776655 444444444444444443 3344444443
No 53
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=52.87 E-value=1.2e+02 Score=27.79 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 980 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~ 980 (1642)
++.++...+..++.+-..-++|+.....|..+...+...+....+.+....+.+.+|..+|.-++.
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667766677777777777776666666655666677777777777777777766553
No 54
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.67 E-value=9.5 Score=31.55 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHHHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTLNN 1190 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtLN~ 1190 (1642)
+|-=-|..+||.+|.+|+.|++|||.|+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 44456788999999999999999999874
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=52.67 E-value=2.3e+02 Score=29.80 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE 967 (1642)
.+++++..|...+..+..|+...+.++..++.|
T Consensus 53 ~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 53 QAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666665555
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.25 E-value=1.2e+02 Score=28.63 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNL 981 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~L 981 (1642)
++.-++...-|.-+|..|..+..++..+...+++.-.....|..+|+.+-...+.=
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444555555555444433
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.69 E-value=1e+02 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
++..|..|.++++.+.+++...++.|.
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443333
No 58
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.58 E-value=90 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=12.4
Q ss_pred HHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 929 QLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 929 e~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
-+++...++..+..++.....+..||..|+-++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 59
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.12 E-value=3.1e+02 Score=30.70 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHH-------HHHHHHHHhhh---CCCCCHHHHHHHHH
Q psy16785 121 KQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT-------LVNNLFSNMLI---NPMINLDMLIKLIQ 184 (1642)
Q Consensus 121 eri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~-------~VN~LFSqlLl---g~~~DlDrLi~mLE 184 (1642)
++...|..-++.+.+--.+|++.+..-.++.+.+..+|. -+=+.-.+.|+ +.++--+++.+.|.
T Consensus 205 ~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~ 278 (373)
T 3hhm_B 205 HNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLG 278 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 333344444444444444444555444455555544444 33344445544 46777777777776
No 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.74 E-value=1.1e+02 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEME 944 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le 944 (1642)
+.+.-...+|+.-......|+..+..++
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444444444444555544444
No 61
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=49.45 E-value=3e+02 Score=30.82 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHH
Q psy16785 936 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 979 (1642)
Q Consensus 936 lEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN 979 (1642)
+.+....|...|+.+.+-..+|++.|..-.++++.|..+|..+.
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44445555666666666777888888888888888888887654
No 62
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.09 E-value=10 Score=31.09 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1163 QTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1163 KTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
|.=-|+.+||-+|.+|..|++||+.|
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44558899999999999999999976
No 63
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=48.86 E-value=79 Score=27.74 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhh
Q psy16785 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 986 (1642)
Q Consensus 924 ~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmL 986 (1642)
..++..++|.+.|+..|..-+..|+.....-..|-.....+..+...++..+.-+|.-+..+.
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 36 EDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888777777777767666666666777888888888888776543
No 64
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.81 E-value=1.4e+02 Score=26.16 Aligned_cols=12 Identities=17% Similarity=0.518 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHH
Q psy16785 53 EEIKIEYEKQMT 64 (1642)
Q Consensus 53 ~DLR~EYEKQL~ 64 (1642)
.++|.+||....
T Consensus 12 ~eiRaQYE~ia~ 23 (77)
T 3trt_A 12 RDVRQQYESVAA 23 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466777766554
No 65
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=48.46 E-value=45 Score=28.77 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 910 AKNALLEAKLKEI-QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 964 (1642)
Q Consensus 910 akn~Llqr~L~e~-K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~t 964 (1642)
|+|+.|.+++.-. |+.|| ||..-+.|++-+..+.+||..|+.+..++
T Consensus 3 arnaylrkkiarlkkdnlq--------lerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 3 ARNAYLRKKIARLKKDNLQ--------LERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHhhhhhh--------hhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667776665543 33444 34444555666666777777777776654
No 66
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.99 E-value=11 Score=30.75 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.3
Q ss_pred hhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1163 QTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1163 KTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
|-==|..+||-+|.+|..|++|||.|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33457889999999999999999976
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.88 E-value=1e+02 Score=29.02 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHH
Q psy16785 98 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDD 135 (1642)
Q Consensus 98 eEaKl~e~~~elqaE~eK~K~leeri~~LEkeVetk~d 135 (1642)
+|+|+...-+.++--+-...+|++.+..|..+++.+..
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666544443333334444555555555555555333
No 68
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.84 E-value=1.2e+02 Score=29.20 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYKENKKQILEMEK 945 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~KnlEe~i~~Le~ 945 (1642)
+.+.-...+|+.-......|+..|..++.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444444444445555444443
No 69
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.27 E-value=20 Score=33.76 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=31.6
Q ss_pred HHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhh
Q psy16785 1170 HLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTV 1206 (1642)
Q Consensus 1170 DLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~V 1206 (1642)
.=|.-|.++..|+++.|.-|.+++++|.+.++|-...
T Consensus 21 aEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 21 EEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3377788888999999999999999999998876544
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.91 E-value=47 Score=28.63 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=17.6
Q ss_pred HhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 115 KYKENKKQILEMEKNIQLKDDEINNLNENLTS 146 (1642)
Q Consensus 115 K~K~leeri~~LEkeVetk~dEi~~l~e~l~s 146 (1642)
+...|+..+..|..+|..+..|+..|+..+..
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666655544
No 71
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.83 E-value=13 Score=30.33 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.4
Q ss_pred hhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1163 QTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1163 KTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
|-==|..+||-++..|..|+.|||.|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33457889999999999999999986
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.59 E-value=1.4e+02 Score=34.39 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcHHHH
Q psy16785 939 QILEMEKNIQLKDDEINNLNENLTSSLAEN 968 (1642)
Q Consensus 939 ~i~~Le~dve~~~dEi~~l~e~l~~tkaE~ 968 (1642)
+|..|+..|+.+..+|..|+..+..++.=|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555666666666666666666655444433
No 73
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=44.47 E-value=93 Score=27.28 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhh
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 169 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlL 169 (1642)
.++..+.+.+.|...|..-+..|+..+..-..|-.....+..+...++..+..+|.-|..+.
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888777777777777766666667788889999999998887664
No 74
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.38 E-value=1.3e+02 Score=26.01 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=22.2
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
.+.+.|+..+..|..+|..+..|+..|...|..
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777777777777665543
No 75
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.24 E-value=2.8e+02 Score=28.34 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=30.9
Q ss_pred HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 932 KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 932 K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
|.|+.+.+-...+..|..+..+|..+...|...+.....++.+|.
T Consensus 85 kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 85 KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666667777777777777777777777777777665
No 76
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.99 E-value=17 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
||-=-|...||-+|..|.+|++|||.|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444557889999999999999999976
No 77
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=43.73 E-value=14 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
+|-==|..+||-++.+|..|++|||.|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344457889999999999999999986
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.47 E-value=2.8e+02 Score=32.04 Aligned_cols=40 Identities=10% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI 954 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi 954 (1642)
|++.+..+|..+..++-..+-|+..|..+-.+++.+..-|
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666665555
No 79
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.11 E-value=1.1e+02 Score=28.97 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=18.6
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
.|.-++++..|+..+..++.||..|++++.
T Consensus 49 LKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 49 LKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 334446666666666666666666666654
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.92 E-value=1.4e+02 Score=27.57 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 911 kn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
+|.=|+..+...+..|+..+.+-..+..+++.+..-++.+=.|+..++..|+.
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34447788888888888888888888888888888888888888888887765
No 81
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.27 E-value=20 Score=29.47 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHhhhhhhHHHHhhhhHH
Q psy16785 1162 SQTFIRLKHLILEKNHLTNQLAKLKTL 1188 (1642)
Q Consensus 1162 SKTyIRLKDLILEKKsL~KEtNRLKtL 1188 (1642)
+|-=-|..+||-+|.+|..|++|||.|
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455567899999999999999999976
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=41.18 E-value=89 Score=28.36 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 971 (1642)
Q Consensus 907 ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L 971 (1642)
|-.|.|..-||-.-+-|... .+.||.++..|+...+.+..|...|+.++.....|...|
T Consensus 11 kR~~qNR~AQRafReRK~~~------i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 11 KRKAQNRAAQRAFRKRKEDH------LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555655666555554433 346666666666666666666666666666655555443
No 83
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.08 E-value=1e+02 Score=28.72 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhH------------HHHHHHHHHhhhcHHHHHHhHHHHh
Q psy16785 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD------------DEINNLNENLTSSLAENHILNSQMT 976 (1642)
Q Consensus 919 L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~------------dEi~~l~e~l~~tkaE~r~L~~QM~ 976 (1642)
+...-+.+..=++|...||.+++.|+.++.... .+|..|+.++.....|+..|..|+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 84
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=41.06 E-value=1.4e+02 Score=26.09 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=41.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHh
Q psy16785 925 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985 (1642)
Q Consensus 925 eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqm 985 (1642)
.++..+++.+.|+..|..-+..|+.....-..|-..-..+..+...++..+.-||.-+..+
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L 97 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777776666666655444445556677888888888776544
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.37 E-value=70 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=18.6
Q ss_pred HhhhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 115 KYKENKKQILEMEKNIQLKDDEINNLNENL 144 (1642)
Q Consensus 115 K~K~leeri~~LEkeVetk~dEi~~l~e~l 144 (1642)
+.+.|+..+..|...|+.+..|+..|++-+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666665543
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.36 E-value=37 Score=38.00 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
++.+++++++.+|+.++..+..++..+++++......+|.|.+++
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477777777777777777778888888777777777776664
No 87
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.21 E-value=1e+02 Score=30.13 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhH----hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 917 AKLKEIQEEIQAQLEKYK----ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 917 r~L~e~K~eLqae~eK~K----nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
++|+--|..|.++.+..| ++++.+..+..+...+..+++.++-.+...+.+...|+.|+
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544322 45555555555555555555555555555555555555443
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.53 E-value=4.1e+02 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhcCc
Q psy16785 37 LKTRLKDVEKKLLESP 52 (1642)
Q Consensus 37 LK~KL~EIE~SlaE~~ 52 (1642)
++..|+++|+.+.+++
T Consensus 98 V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHh
Confidence 4566666666666554
No 89
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.33 E-value=1.7e+02 Score=27.31 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhc
Q psy16785 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSS 964 (1642)
Q Consensus 911 kn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~t 964 (1642)
+|+=|+..+...+..|+..+.+-..+..+++.+..-++.+=.|+..++..|+..
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344477777777777777777777888888888888888888888888777653
No 90
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.59 E-value=3.3e+02 Score=27.29 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHhccC
Q psy16785 850 LVSDLKTRLKDVEKKLLES 868 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL~Er 868 (1642)
.++....||.+.++...+.
T Consensus 18 rl~~a~~kLeeaek~adE~ 36 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADES 36 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566677776666553
No 91
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.35 E-value=1.8e+02 Score=26.67 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 103 KEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 103 ~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
+.+++.++.+-...++|+..+..|..+...+...+....+.|....+-+..|.++|.-++
T Consensus 24 ~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 24 DKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555544455555555555555555555554443
No 92
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.14 E-value=1.2e+02 Score=30.57 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=31.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q psy16785 845 SVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK 902 (1642)
Q Consensus 845 svrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e 902 (1642)
..+..+++.++.+|.++..-+ .++..||.+- ...|-+||.+-..+|..
T Consensus 21 ~~~~~~le~l~~~l~~l~~~l----~~~~~e~~~L------~~~l~eE~~~R~~aE~~ 68 (135)
T 2e7s_A 21 KAAIENYNQLKEDYNTLKREL----SDRDDEVKRL------REDIAKENELRTKAEEE 68 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----TTHHHHHHTH------HHHHHHTTSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 667788888888888888665 3666666652 34566666665554443
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=35.96 E-value=1.8e+02 Score=33.75 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=13.6
Q ss_pred cccCCCcC-ccccccccccccCCC
Q psy16785 1131 QYENNDVN-ENFESCYKNIKTNTG 1153 (1642)
Q Consensus 1131 ~~e~~~~~-e~~~~CyKsv~T~~G 1153 (1642)
.+...|+. -....||....+ .|
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~-~G 319 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETD-TG 319 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCS-CC
T ss_pred CcccCCeeEEeccCcccCCCC-CC
Confidence 46666653 235678887766 44
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.60 E-value=3.3e+02 Score=27.27 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHh----hhhhHHHHHHHHHHhhhcH
Q psy16785 897 AELEHKTMIEKELAKNALLEAKLKEIQEEIQAQL-------EKYKENKKQILEMEKN----IQLKDDEINNLNENLTSSL 965 (1642)
Q Consensus 897 aele~e~~i~ke~akn~Llqr~L~e~K~eLqae~-------eK~KnlEe~i~~Le~d----ve~~~dEi~~l~e~l~~tk 965 (1642)
|++|=.| .+.||+++|..-++-|..-. .....|.+-+.+.... |+.+..||..|+.+|....
T Consensus 19 Aq~ECrN-------~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 19 AVMEARN-------VTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHhHHH
Q psy16785 966 AENHILNSQMTLVN 979 (1642)
Q Consensus 966 aE~r~L~~QM~lVN 979 (1642)
+|...|..+--..+
T Consensus 92 ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 92 AEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhh
No 95
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=35.27 E-value=1.7e+02 Score=25.40 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhh
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNML 169 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlL 169 (1642)
.++..+.+.+.|...|..-...|+.....-..|-.....+..+...++..+..||.-|..|.
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777766666666666555554444455567788888888888876654
No 96
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.78 E-value=3.3e+02 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Q psy16785 938 KQILEMEKNIQLKDDEINNLNEN 960 (1642)
Q Consensus 938 e~i~~Le~dve~~~dEi~~l~e~ 960 (1642)
.+|.-|+..|+.+..+|..|+.-
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 97
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=32.70 E-value=1.6e+02 Score=33.94 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=32.0
Q ss_pred ccccccccCCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 822 VCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 822 ~~~~~~~~m~~t~~~~~il~~trsvrE~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
.|.-||. +...|..-..--...+++|+..|.+|+++=.+- .+| |..|+..|..|++.
T Consensus 18 ~CPTtCg-------l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~-----~~~------v~~ik~~~~~~q~~ 74 (411)
T 3ghg_C 18 YCPTTCG-------IADFLSTYQTKVDKDLQSLEDILHQVENKTSEV-----KQL------IKAIQLTYNPDESS 74 (411)
T ss_dssp EEECSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH------HHHHHHHHCTTTCC
T ss_pred cCCCcch-------HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHH-----HHH------HHHHHHhhccccCC
Confidence 4667774 333333333223346777888887777664332 122 55677777777654
No 98
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=32.68 E-value=5e+02 Score=29.68 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~ 963 (1642)
.+|++.|.+++.+|++-|......|..|+..+..
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 4477778888888888777777777777776654
No 99
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.22 E-value=3.9e+02 Score=31.51 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=6.8
Q ss_pred CCCCHHHHHHH
Q psy16785 564 RTRTPEEILEA 574 (1642)
Q Consensus 564 k~rtpee~l~~ 574 (1642)
++.||.+.|..
T Consensus 194 ~~~t~~eyLe~ 204 (592)
T 1f5n_A 194 QPLTPDEYLTY 204 (592)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 34577777664
No 100
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.41 E-value=62 Score=36.25 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 112 QLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 112 E~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
..++-+++++.+.+|+.+++.+..++..+++++.....+++.|+.++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777777777888888888888888777777777775553
No 101
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.30 E-value=7.3e+02 Score=29.45 Aligned_cols=29 Identities=7% Similarity=0.187 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 134 DDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 134 ~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
+.+|++-+..++.-......+..+...|+
T Consensus 72 ~~dlakY~~~~AeY~~kl~aYe~~~~~~~ 100 (497)
T 3iox_A 72 QADLAKYQKDLADYPVKLKAYEDEQTSIK 100 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443334444444433333
No 102
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.90 E-value=54 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=18.6
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
.+...|+..+..|..+|..+..|+..|...|.
T Consensus 29 ~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 29 EKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777666666665554
No 103
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.16 E-value=4.7e+02 Score=26.83 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q psy16785 888 ELYEQRAAAAELE 900 (1642)
Q Consensus 888 ~LYEER~Rvaele 900 (1642)
.|-+||.+-..++
T Consensus 66 ~l~~E~~~R~~aE 78 (154)
T 2ocy_A 66 DIAKENELRTKAE 78 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555544443
No 104
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.77 E-value=46 Score=30.18 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 118 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 118 ~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
+|+.++..|+...+.+..|...|+..+.....|...|
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555555555555555555554443
No 105
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.65 E-value=2.2e+02 Score=26.98 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+|+.+-..-++++-.-.+||..|+.+|..--+|.+-|+.||
T Consensus 37 elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 37 ELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333344444444455555555555555555554444
No 106
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.88 E-value=68 Score=35.65 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=26.5
Q ss_pred HHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHH
Q psy16785 930 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967 (1642)
Q Consensus 930 ~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE 967 (1642)
++|+++|.+++.+|+..|.....+|..|++.+...+..
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~ 41 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQF 41 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 45777777788888877777777777777776654433
No 107
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.87 E-value=2e+02 Score=32.93 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=15.9
Q ss_pred hHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 933 YKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 933 ~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
..+.+..|..|+..+..++..|.+|+.++
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455566666666665555555554443
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.53 E-value=1.2e+02 Score=26.58 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
.+.=..+.+.|+.++..|...|+.+..|+..|..-+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555666666666666666666666665443
No 109
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.62 E-value=2.5e+02 Score=26.26 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=68.3
Q ss_pred hHHHHHHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhH
Q psy16785 1165 FIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNI 1244 (1642)
Q Consensus 1165 yIRLKDLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrL 1244 (1642)
=..|++|-.+...|..|+..|..=+.-|+.-|...+.-+..+..+=.+-|+-.+.+++|+..+.-.-+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~------------ 77 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK------------ 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45789999999999999999999888999999888888888888889999999999999877665443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16785 1245 INDLKIDLEYVREKWDLVK 1263 (1642)
Q Consensus 1245 LsELKeELEYCReKW~~AR 1263 (1642)
.|+-.+.|+...++..|
T Consensus 78 --Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 78 --SVENQMRYAQMQLDKLK 94 (96)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhh
Confidence 44555666666555444
No 110
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.27 E-value=3.3e+02 Score=31.89 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16785 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 927 (1642)
Q Consensus 848 E~Qv~qLK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLq 927 (1642)
...+++|+..|.+|+++=.+- .+| |..|+..|..|++...=- ++.|.+- ...|+++ +.
T Consensus 94 ~~dl~~Le~~l~~isn~Ts~a-----~~~------v~~ik~s~~~~q~~~~~n-~~~~~~s-------~~mle~~---~~ 151 (461)
T 3ghg_B 94 RNSVDELNNNVEAVSQTSSSS-----FQY------MYLLKDLWQKRQKQVKDN-ENVVNEY-------SSELEKH---QL 151 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HTH------HHHHHHHHHHHHHHHHHH-HHTTSCH-------HHHHHHH---HT
T ss_pred hhHHHHHHHHHHHHHhhhHHH-----HHH------HHHHHHHhccccCCCCcc-hhHHHHH-------HHHHHHH---HH
Confidence 345677777777777654331 122 567888999999874432 2211110 0011111 11
Q ss_pred HHHH-HhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHH
Q psy16785 928 AQLE-KYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 969 (1642)
Q Consensus 928 ae~e-K~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r 969 (1642)
++.+ -.-+.+..|..|+.-++.....|.+|+..+....+.|+
T Consensus 152 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 152 YIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 1000 11245555666666666666666666555554444443
No 111
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=25.80 E-value=50 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHH
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENLTSSLA 966 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tka 966 (1642)
+.||..+++|..+...+.+|.+.|++-+++|+|
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~~ 36 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAECKA 36 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 457777777777777888888888888887764
No 112
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.15 E-value=3.6e+02 Score=27.68 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHh
Q psy16785 103 KEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154 (1642)
Q Consensus 103 ~e~~~elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L 154 (1642)
+.+..+|.+..+..++++..++.|...+..+.-++.+|.++.--+.+-+..|
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgL 120 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSL 120 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5666677777888888888888888877777777777766665554444443
No 113
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.03 E-value=2.2e+02 Score=32.48 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy16785 882 NYKKLRELYEQRAAA 896 (1642)
Q Consensus 882 NIR~LR~LYEER~Rv 896 (1642)
.+-.+..||++|..+
T Consensus 29 ~~~~~~~l~~~~r~~ 43 (455)
T 2dq0_A 29 WVDEILKLDTEWRTK 43 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777776554
No 114
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=24.00 E-value=1.3e+02 Score=32.74 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHhhhhhhHHHHhhhhHHHHHHHHhhhhhcccchhhh---------------------hhchhhhHHHHHHHHHHh
Q psy16785 1167 RLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVT---------------------TELKKTWNVVNKLKLQHK 1225 (1642)
Q Consensus 1167 RLKDLILEKKsL~KEtNRLKtLN~HLE~RL~eQEKRLS~VS---------------------~ELtKTWhlVgKMqrQHr 1225 (1642)
-|+.|-+|..+|..|+...||.|..|+.++++.-.++..+. ...-|.|+.|.++ -
T Consensus 87 ~l~~lD~ei~sLkrqIq~~kQ~~~~L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~----V 162 (235)
T 2iw5_B 87 VLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDV----I 162 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHH----H
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHH----c
Confidence 57899999999999999999999999999965554443321 1233677777665 4
Q ss_pred hhhhhhHHHHHHHHhHhhH
Q psy16785 1226 QLYTHEKILKYELKHKRNI 1244 (1642)
Q Consensus 1226 QLHThEkILRYeLQqKRrL 1244 (1642)
.--|-.||-.|-...|||+
T Consensus 163 gTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 163 GNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp SSCCHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 4556777777766666653
No 115
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.79 E-value=4.7e+02 Score=24.79 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-----hhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHH
Q psy16785 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKN-----IQLKDDEINNLNENLTSSLAENHILNSQMTLVN 162 (1642)
Q Consensus 93 ~KndLeEaKl~e~~~elqaE~eK~K~leeri~~LEke-----Vetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN 162 (1642)
.|+. +.+||.+|+.+|+.|.....+++.-+.-...+ ......+|.....+|.....|...++.-++-+.
T Consensus 16 Rkkk-L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 16 QRKR-LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 34889899999998888877777766665543 445667777777777777777777777766664
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=23.68 E-value=4.4e+02 Score=24.40 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHH
Q psy16785 119 NKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNN 163 (1642)
Q Consensus 119 leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~ 163 (1642)
+..+|..|+.+++...+.+...+.++....--.-.--++|+++|.
T Consensus 49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443332222233346666654
No 117
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=23.58 E-value=2.6e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHhhhhhHHHHHHHHHHh
Q psy16785 934 KENKKQILEMEKNIQLKDDEINNLNENL 961 (1642)
Q Consensus 934 KnlEe~i~~Le~dve~~~dEi~~l~e~l 961 (1642)
+.+...+..+..++....++|.+++.++
T Consensus 29 ~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666665554
No 118
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.47 E-value=6.4e+02 Score=26.18 Aligned_cols=85 Identities=19% Similarity=0.078 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh-hh------HHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhc
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ-LK------DDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLI 987 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve-~~------~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLL 987 (1642)
++-.|+..+..++..++..+.|+........+.+ .+ +.-+..|+......-+||+.|..+. +-
T Consensus 84 l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F----------~~ 153 (192)
T 2p22_C 84 NFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTT----------RS 153 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSC----------SC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------cC
Confidence 3456777777788777777777777755443332 22 2445677777788888888776654 44
Q ss_pred C-CCCChHHHHHHHHHhHHHHHHH
Q psy16785 988 N-PMINLDMLIKLIQDNYLLIIDL 1010 (1642)
Q Consensus 988 G-~~iDLDrL~~lLEENr~LL~dM 1010 (1642)
| .++|+|.+.+-.-+-|-+. ++
T Consensus 154 ~~~e~dv~~Fl~~y~~~R~~y-H~ 176 (192)
T 2p22_C 154 IDSADDLDQFIKNYLDIRTQY-HL 176 (192)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-HH
T ss_pred CcccchHHHHHHHHHHHHHHH-HH
Confidence 4 4799999998777777765 44
No 119
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=22.03 E-value=1e+03 Score=28.17 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHhHHHHhHH
Q psy16785 951 DDEINNLNENLTSSLAENHILNSQMTLV 978 (1642)
Q Consensus 951 ~dEi~~l~e~l~~tkaE~r~L~~QM~lV 978 (1642)
+.+++.-+..+..-++.....+.+...|
T Consensus 72 ~~dlakY~~~~AeY~~kl~aYe~~~~~~ 99 (497)
T 3iox_A 72 QADLAKYQKDLADYPVKLKAYEDEQTSI 99 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 120
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=21.83 E-value=4.3e+02 Score=31.01 Aligned_cols=44 Identities=7% Similarity=0.261 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhcCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy16785 36 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELE 83 (1642)
Q Consensus 36 QLK~KL~EIE~SlaE~~~DLR~EYEKQL~NIR~LRqLYEERaRaAa~e 83 (1642)
-.|+.|+++|..|.+++..=.--|+. |.-|+..|..||....--
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~----v~~ik~s~~~~q~~~~~n 135 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQY----MYLLKDLWQKRQKQVKDN 135 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhccccCCCCcc
Confidence 34667777777776555422222211 445667788888766543
No 121
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.70 E-value=1.1e+02 Score=26.96 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q psy16785 931 EKYKENKKQILEMEKNIQLKDDEINNLNENLT 962 (1642)
Q Consensus 931 eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~ 962 (1642)
+...+|+.++..|+.+...+..+++.|+++++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33446777777777777777778888777665
No 122
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.65 E-value=2e+02 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHHhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16785 113 LEKYKENKKQILEMEKNIQLKDDEINNLNE 142 (1642)
Q Consensus 113 ~eK~K~leeri~~LEkeVetk~dEi~~l~e 142 (1642)
++-|+.|-++|..|+.++.++..+...+++
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444443
No 123
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.48 E-value=1.8e+02 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy16785 915 LEAKLKEIQEEIQAQLEKYKENKKQILEM 943 (1642)
Q Consensus 915 lqr~L~e~K~eLqae~eK~KnlEe~i~~L 943 (1642)
||+.++...++|..+.+|++.+.+.+...
T Consensus 17 Lek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 17 LKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55666666666666666666666655543
No 124
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.16 E-value=4e+02 Score=26.11 Aligned_cols=24 Identities=4% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 952 DEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 952 dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
.||.+=+.-+..+..+...++.+|
T Consensus 105 ~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 105 GDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666665
No 125
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.85 E-value=5.6e+02 Score=24.57 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16785 919 LKEIQEEIQ 927 (1642)
Q Consensus 919 L~e~K~eLq 927 (1642)
|...+.+++
T Consensus 93 L~~~r~em~ 101 (131)
T 3tnu_A 93 LAQLRCEME 101 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 126
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.74 E-value=2.3e+02 Score=29.83 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 158 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM 158 (1642)
.+.-=++....++.++..|.++++.+..+++++++++-.+-.++..+-.+|
T Consensus 126 lfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 126 LIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456677777777777777788888888887777777777666554
No 127
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.43 E-value=2.2e+02 Score=32.02 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy16785 883 YKKLRELYEQRAAA 896 (1642)
Q Consensus 883 IR~LR~LYEER~Rv 896 (1642)
+-.+..||++|..+
T Consensus 27 ~~~~~~~~~~~r~~ 40 (421)
T 1ses_A 27 LEALLALDREVQEL 40 (421)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666665544
No 128
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.38 E-value=2.9e+02 Score=25.85 Aligned_cols=81 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhhHHHH
Q psy16785 875 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI 954 (1642)
Q Consensus 875 EYERQL~NIR~LR~LYEER~Rvaele~e~~i~ke~akn~Llqr~L~e~K~eLqae~eK~KnlEe~i~~Le~dve~~~dEi 954 (1642)
+.-+.|.|||+| |+.+.++--+. ++.-+.|=.-+ +++.+.+-..++...++-++.++++.+.+....--.
T Consensus 6 ~~lk~L~niR~L------RA~arel~le~-Lee~leKl~~V---veERree~~~~~~~~~er~~Kl~~~~e~l~~~GI~~ 75 (86)
T 3nr7_A 6 EALKILNNIRTL------RAQARESTLET-LEEMLEKLEVV---VNERREEESAAAAEVEERTRKLQQYREMLIADGIDP 75 (86)
T ss_dssp CHHHHHTCHHHH------HHHHHTSCHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHhhHHHH------HHHHHhCCHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q ss_pred HHHHHHhhhcH
Q psy16785 955 NNLNENLTSSL 965 (1642)
Q Consensus 955 ~~l~e~l~~tk 965 (1642)
+.|-.-++..+
T Consensus 76 eeL~~~~~~~~ 86 (86)
T 3nr7_A 76 NELLNSMAAAK 86 (86)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHhhhccCC
No 129
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.24 E-value=95 Score=30.62 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q psy16785 952 DEINNLNENL 961 (1642)
Q Consensus 952 dEi~~l~e~l 961 (1642)
.|++.|..++
T Consensus 90 ~eKe~L~~ql 99 (110)
T 2v4h_A 90 EKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 130
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.24 E-value=1.6e+02 Score=33.16 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 935 ENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 935 nlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
++.+++++++.++..+..+++.++++|.....++|.|.+++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~ 54 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTV 54 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555566666666655555666665544
No 131
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=20.08 E-value=5.5e+02 Score=24.35 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=53.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhHHHHHHHH
Q psy16785 126 MEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLI 194 (1642)
Q Consensus 126 LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSqlLlg~~~DlDrLi~mLEENr~LL~dMt 194 (1642)
|-|-|+-..+-+.+++.+...++---+.++.||.-+=+-|..+.-| ++|-.+|-.|+-|=.+..++.-
T Consensus 5 lnklvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmqg-nqddgklqnmihemqqfmnqvd 72 (102)
T 3vjf_A 5 LNKLVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQG-NQDDGKLQNMIHEMQQFMNQVD 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHH
Confidence 4455666667788899999999999999999998777777666656 5788899999988777777654
No 132
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.02 E-value=2.5e+02 Score=32.64 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q psy16785 883 YKKLRELYEQRAAA 896 (1642)
Q Consensus 883 IR~LR~LYEER~Rv 896 (1642)
+-.+..|+++|..+
T Consensus 32 ~~~~~~ld~~~r~~ 45 (485)
T 3qne_A 32 VDEIIAEYKEWVKL 45 (485)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677766544
Done!