Query psy16785
Match_columns 1642
No_of_seqs 34 out of 36
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 22:02:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16785.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16785hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 59.3 22 0.0016 30.8 9.1 34 854-896 7-40 (110)
2 d2ap3a1 a.24.27.1 (A:12-196) H 52.2 57 0.0041 26.5 10.3 136 33-168 23-163 (185)
3 d2efla1 a.238.1.4 (A:1-288) Fo 36.3 1.5E+02 0.011 26.8 15.9 53 108-160 105-157 (288)
4 d1seta1 a.2.7.1 (A:1-110) Sery 33.9 1.3E+02 0.0094 25.6 10.0 50 939-988 50-100 (110)
5 d2efla1 a.238.1.4 (A:1-288) Fo 30.5 1.9E+02 0.014 26.2 17.3 50 926-975 106-155 (288)
6 d2efka1 a.238.1.4 (A:10-288) C 24.5 2.4E+02 0.017 25.4 16.0 7 974-980 184-190 (279)
7 d1gqea_ e.38.1.1 (A:) Polypept 23.5 3.8E+02 0.028 27.4 13.3 14 1229-1242 316-329 (362)
8 d1cuna2 a.7.1.1 (A:116-219) Sp 20.9 86 0.0063 25.3 6.1 84 1194-1286 11-98 (104)
9 d2vnga1 b.18.1.33 (A:39-209) U 20.2 9.6 0.0007 36.7 -0.2 27 1549-1575 48-75 (171)
10 d1gqea_ e.38.1.1 (A:) Polypept 18.7 3.2E+02 0.023 27.9 11.3 16 850-865 7-22 (362)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=59.29 E-value=22 Score=30.78 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16785 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAA 896 (1642)
Q Consensus 854 LK~kL~qIE~sL~Ers~dLr~EYERQL~NIR~LR~LYEER~Rv 896 (1642)
++.-...+..++..|--++ ++..+-.||++|..+
T Consensus 7 ir~n~e~v~~~l~~R~~~~---------~ld~i~~ld~~rr~l 40 (110)
T d1seta1 7 LRQEPEVFHRAIREKGVAL---------DLEALLALDREVQEL 40 (110)
T ss_dssp HHHCHHHHHHHHHHTTCCC---------CHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCCcc---------CHHHHHHHHHHHHHH
Confidence 3344556666777772222 245677777777655
No 2
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=52.23 E-value=57 Score=26.51 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHHHhhcCchHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy16785 33 KVSDLKTRLKDVEKKLLESPEEIKI-EYEKQMTNYKKLRELYEQRAAAAELEHKTMIE----KELAKNALLEAKLKEIQE 107 (1642)
Q Consensus 33 keaQLK~KL~EIE~SlaE~~~DLR~-EYEKQL~NIR~LRqLYEERaRaAa~e~e~LiR----le~~KndLeEaKl~e~~~ 107 (1642)
...++..++.+++..+......+.. ..+.....+..+...++............+.. +...+..+...+....+.
T Consensus 23 ~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (185)
T d2ap3a1 23 PIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRK 102 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHHHHHHHHHh
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~VN~LFSql 168 (1642)
.+.......+.....+..+...+......+..+...+.........+..++..++....++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 163 (185)
T d2ap3a1 103 EVKQLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKL 163 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
No 3
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.28 E-value=1.5e+02 Score=26.83 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHHHH
Q psy16785 108 EIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 160 (1642)
Q Consensus 108 elqaE~eK~K~leeri~~LEkeVetk~dEi~~l~e~l~s~~aE~r~L~aQM~~ 160 (1642)
.+.......|.+.....++.++++....++.+.+..+.....|...+..++..
T Consensus 105 ~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~ 157 (288)
T d2efla1 105 YVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK 157 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444556678888889999999999999999988888777766666555443
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=33.88 E-value=1.3e+02 Score=25.59 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHHHHHHhh-hhhHHHHHHHHHHhhhcHHHHHHhHHHHhHHHHHHHHhhcC
Q psy16785 939 QILEMEKNI-QLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLIN 988 (1642)
Q Consensus 939 ~i~~Le~dv-e~~~dEi~~l~e~l~~tkaE~r~L~~QM~lVN~LFSqmLLG 988 (1642)
+...+-+.+ ....++...+.++....+.+...|..+...+..-|..++++
T Consensus 50 ~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~ 100 (110)
T d1seta1 50 ERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (110)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444 23455666777777788888888888888888888888887
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.47 E-value=1.9e+02 Score=26.16 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHhHhHHHHHHHHHHhhhhhHHHHHHHHHHhhhcHHHHHHhHHHH
Q psy16785 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQM 975 (1642)
Q Consensus 926 Lqae~eK~KnlEe~i~~Le~dve~~~dEi~~l~e~l~~tkaE~r~L~~QM 975 (1642)
+.......|.+.....++.+++.....++.+.+..+.....|...+..++
T Consensus 106 ~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~ 155 (288)
T d2efla1 106 VQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF 155 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777778888888777777777777766655555554444
No 6
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.46 E-value=2.4e+02 Score=25.38 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=2.7
Q ss_pred HHhHHHH
Q psy16785 974 QMTLVNN 980 (1642)
Q Consensus 974 QM~lVN~ 980 (1642)
.+...|.
T Consensus 184 ~l~~~n~ 190 (279)
T d2efka1 184 QLQRFNR 190 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=23.49 E-value=3.8e+02 Score=27.37 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHhHh
Q psy16785 1229 THEKILKYELKHKR 1242 (1642)
Q Consensus 1229 ThEkILRYeLQqKR 1242 (1642)
+++||=.|-+.|-|
T Consensus 316 ~g~~iRtY~~~~~r 329 (362)
T d1gqea_ 316 WGSQIRSYVLDDSR 329 (362)
T ss_dssp SCSEEEEEEGGGTE
T ss_pred CcCCccCccCCCCc
Confidence 34555555555543
No 8
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.87 E-value=86 Score=25.27 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=53.9
Q ss_pred HhhhhhcccchhhhhhchhhhHHHHHHHHHHhhhhhhhHHHHHHHHhHhhHHHHHHHH----HHHHHHHHHHHHhhhccC
Q psy16785 1194 IRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKID----LEYVREKWDLVKEKNEQN 1269 (1642)
Q Consensus 1194 ~RL~eQEKRLS~VS~ELtKTWhlVgKMqrQHrQLHThEkILRYeLQqKRrLLsELKeE----LEYCReKW~~AR~KN~eS 1269 (1642)
.-|.+.+.-|+ +.++.+....|-.|.++|+.+.. ++..++.-+..|... +.-+....+.++++-.+-
T Consensus 11 ~Wl~e~~~~l~--~~~~g~d~~~v~~ll~~h~~~~~-------ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l 81 (104)
T d1cuna2 11 AWINEKMTLVA--SEDYGDTLAAIQGLLKKHEAFET-------DFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 81 (104)
T ss_dssp HHHHHHHHHHT--CCCCCSSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 34455555553 57788999999999999987754 233333333222222 111223456778888888
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy16785 1270 ELDYKVLRKEFALRRLQ 1286 (1642)
Q Consensus 1270 E~qwk~LR~EFA~RK~~ 1286 (1642)
+..|..|..-...|+..
T Consensus 82 ~~~w~~L~~~~~~R~~~ 98 (104)
T d1cuna2 82 KGKVSDLEKAAAQRKAK 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999988888764
No 9
>d2vnga1 b.18.1.33 (A:39-209) Uncharacterized protein CPE0329 {Clostridium perfringens [TaxId: 1502]}
Probab=20.20 E-value=9.6 Score=36.71 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=21.0
Q ss_pred ccccccccccccccccccccchhhc-cc
Q psy16785 1549 EAQIPIFDKGIGTHYIKENMVSYQL-GF 1575 (1642)
Q Consensus 1549 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 1575 (1642)
..++.-|+||||+|.-..--+.|.| |.
T Consensus 48 dg~~~~f~KGlG~hA~s~S~I~YdL~G~ 75 (171)
T d2vnga1 48 DGSISEFEKGLGTIAGSPSTITYDISGA 75 (171)
T ss_dssp TSCEEEESSEEEEECBSSEEEEEECTTS
T ss_pred cCCeEEecCceeeecCCceEEEEEcCCC
Confidence 3567889999999986556678888 53
No 10
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=18.70 E-value=3.2e+02 Score=27.95 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHh
Q psy16785 850 LVSDLKTRLKDVEKKL 865 (1642)
Q Consensus 850 Qv~qLK~kL~qIE~sL 865 (1642)
++++|+.+|..|...|
T Consensus 7 ~i~eL~~rl~~Lr~~f 22 (362)
T d1gqea_ 7 RIQDLTERSDVLRGYL 22 (362)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3444444444444433
Done!