RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16785
(1642 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.5 bits (195), Expect = 8e-15
Identities = 99/699 (14%), Positives = 193/699 (27%), Gaps = 234/699 (33%)
Query: 464 TESPSEEQKSKQLIR--QDRITEE------TDESRP-FESAECSR-TSQPEVENHI---- 509
E+ + + K ++ +D + D + E + +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 510 -----SNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSV------PTATSNTTLPS 558
+ ++ E+ + + TE Q +T + N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 559 EPSVSRTRTPEEILEARNARLKRLEDQCKNLF-HKM------SLTSQRSDTL-SERLEEL 610
+VSR + L+ R A L L KN+ + + D S +++
Sbjct: 129 Y-NVSR---LQPYLKLRQA-LLELRPA-KNVLIDGVLGSGKTWVAL---DVCLSYKVQCK 179
Query: 611 HD---YYGTSNERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANV-PDSQENSQESDDT 666
D ++ + +S +T L E L + + P+ S S +
Sbjct: 180 MDFKIFWLNL-----------KNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 667 RRRSAETNESHSGVSGNVSDLQDRIDTRLKSSPEINECTSAVSAVSEESSGLRSVDAIRP 726
+ R + +Q + RL S C L
Sbjct: 224 KLR--------------IHSIQAEL-RRLLKSKPYENC-------------LL------- 248
Query: 727 VLNHDEMTRRNVEAESRADAV-VQDRI--DTRLKSSPGINECTSAVSAVSEESSGLRSVD 783
VL NV+ +A + +I TR K +S ++ S+D
Sbjct: 249 VL-------LNVQNAKAWNAFNLSCKILLTTRFKQ---------VTDFLSAATTTHISLD 292
Query: 784 AIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNGVCLK-TCVPMHSTPPES---NI 839
L DE + LK P E N
Sbjct: 293 HHSMTLTPDE-------------------------VKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 840 LATTRSVILPLVSDLKTR---LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA-- 894
S+I + D K V L I+ R+++++ +
Sbjct: 328 RRL--SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAE--YRKMFDRLSVF 381
Query: 895 ---------------AAAELEHKTMIEKELAKNALLEAKLKE-------IQEEIQAQLEK 932
++ +L K +L+E + KE I E++ +LE
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 933 YKENKKQILEMEKNIQLKDDEINNLNENLTSSLAEN--------HILNSQMTLVNNLFSN 984
+ I++ NI D +++L + H+ N + LF
Sbjct: 442 EYALHRSIVD-HYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 985 MLIN-----------------PMINLDMLIKL------IQDNY----LLIIDLIN---NH 1014
+ ++ L+ L +L I DN L+ +++
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 1015 EINDTVSLLVDLEKKIDQETLAIQNDKQ------LKQLE 1047
E N L+ + + +A+ + + KQ++
Sbjct: 556 EEN----LICSKYTDLLR--IALMAEDEAIFEEAHKQVQ 588
Score = 67.2 bits (163), Expect = 4e-11
Identities = 95/653 (14%), Positives = 212/653 (32%), Gaps = 162/653 (24%)
Query: 672 ETNESHSGVSGNVSDLQDRI--DTRLKSSPEINECTSAVSAVSEESSGLRSVDAIRPVLN 729
ET E +S +D + K ++ + ++ + EE +D I +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCK---DVQDMPKSILS-KEE------IDHIIMSKD 59
Query: 730 HDEMTRRNVEA-ESRADAVVQDRIDTRLKSSPGINECTSAVSAVSEESSGLRS--VDAIR 786
T R S+ + +VQ ++ L+ S + + S + ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 787 PVLNHDE-MTRRNVEAESRADAVVQGQE---KPRPLTNGVCL-------KTCV------- 828
+ N ++ + NV SR ++ ++ + RP V + KT V
Sbjct: 118 RLYNDNQVFAKYNV---SRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLS 173
Query: 829 -PMHSTPPESNIL-------ATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQM 880
+ I + +V+ L L ++ + IK+
Sbjct: 174 YKVQCKMD-FKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSI- 230
Query: 881 TNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQI 940
+LR L + + ++ N LL L +Q A+ +I
Sbjct: 231 --QAELRRLLKSK------PYE---------NCLL--VLLNVQN---AKAWNAFNLSCKI 268
Query: 941 LEMEKNIQLKDDEINNLNENLTSSLAENHI---LNSQMTLVNNLFSNML----------- 986
L + Q+ D L+ T+ ++ +H L +L L
Sbjct: 269 LLTTRFKQVTDF----LSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREV 322
Query: 987 --INPMINLDMLIKLIQDNYLLIIDLINN--HEINDTVSLLVDLEKKIDQETLAIQNDKQ 1042
NP L ++ + I+D + +N H D L I+ +L + +
Sbjct: 323 LTTNPRR-LSIIAESIRDG----LATWDNWKHVNCDK------LTTIIES-SLNVLEPAE 370
Query: 1043 LKQLENYE--------TPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDE 1094
+++ ++ + + ++ + + D + ++ S ++
Sbjct: 371 YRKM--FDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVV-VNKLHK----YSLVEKQP 421
Query: 1095 TNSTTTLDKSHIQ-KEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCY-------- 1145
ST ++ +++ K N + R +++ N + ++++D+ + Y
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSHIGHH 480
Query: 1146 -KNIKTNTGKTHQVISVSQTFI-------RLKHLILEKN---HLTNQLAKLKTLNNHLEI 1194
KNI ++ F+ +++H N + N L +LK + I
Sbjct: 481 LKNI----EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--I 534
Query: 1195 RLNHS--EQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNII 1245
N E+ +N + L K + + + K + +L+ L + I
Sbjct: 535 CDNDPKYERLVNAILDFLPK----IEENLICSK----YTDLLRIALMAEDEAI 579
Score = 59.9 bits (144), Expect = 7e-09
Identities = 81/563 (14%), Positives = 180/563 (31%), Gaps = 133/563 (23%)
Query: 1126 NTHQEQYENNDVNENFESCYK---NIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQL 1182
T + QY+ D+ FE + + K ++S + + H+I+ K+ + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE----IDHIIMSKDAV-SGT 64
Query: 1183 AKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWN-VVNKLKLQHKQLYTHEKILKYELKHK 1241
+L + E V L+ + +++ +K + +Q Y +
Sbjct: 65 LRLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRD 117
Query: 1242 RNIINDLKIDLEY--VREKWDLVKEKNEQNELDYKVLRKEFALRRLQ------YDG---- 1289
R + ND ++ +Y R + Y LR+ AL L+ DG
Sbjct: 118 R-LYNDNQVFAKYNVSRLQ-------------PYLKLRQ--ALLELRPAKNVLIDGVLGS 161
Query: 1290 GRS--TSESGISTDTE---DDNVE-IVETNDESEDDKSEVVETQSEHDVPHTNSVMSIEE 1343
G++ + +S + D + + N S + E+++ P+ S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1344 DDQDEVEELESETNVSAINNEQEVERT-EVTDNTSAVIPSRETIENEAVPVS-----VSP 1397
+ + + +++E + + + E V N + + + A +S +
Sbjct: 222 NIKLRIHSIQAE--LRRLLKSKPYENCLLVLLN----VQNAKAW--NAFNLSCKILLTTR 273
Query: 1398 QEDIVDTITTSRTDHI--ESHQEINSSRETKEIPGTSDANVNYSQQFLNNKIT-----IK 1450
+ + D ++ + T HI + H + E K + ++L+ + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----------LLKYLDCRPQDLPREVL 323
Query: 1451 TIGG-KIKVVAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKYK-----------PV 1498
T ++ ++AE I + + W W+ +K P
Sbjct: 324 TTNPRRLSIIAESIR-----------DGLAT---WDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 1499 TNRQIKNFWK--IFGKFKTVNKNFMRITLCASFPEFQGGEVSVDETSNLQKSEAQIPIFD 1556
R+ F + +F + + I L + + +V V + S +
Sbjct: 370 EYRK--MFDRLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---Q 420
Query: 1557 KGIGTHYIKENMVSYQLGFSFRKAPRLTKVVEQGCPIADRFQIDRDQHTQQCLNLVISSY 1616
T I + + + + I D + I + + + + Y
Sbjct: 421 PKESTISI------PSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 1617 KPDYSKLVSHWNCRPLAVKEEEE 1639
YS + H L E E
Sbjct: 473 F--YSHIGHH-----LKNIEHPE 488
Score = 54.5 bits (130), Expect = 3e-07
Identities = 40/282 (14%), Positives = 87/282 (30%), Gaps = 89/282 (31%)
Query: 20 GSPLTSSTSMVVFKVSDLKTR---LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQR 76
+P S++ + D K V L I+ R+++++
Sbjct: 325 TNPRR--LSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAE--YRKMFDRL 378
Query: 77 A-----------------AAAELEHKTMIEKELAKNALLEAKLKE-------IQEEIQAQ 112
+ ++ +L K +L+E + KE I E++ +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 113 LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAEN--------HILNSQMTLVNNL 164
LE + I++ NI D +++L + H+ N + L
Sbjct: 439 LENEYALHRSIVD-HYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 165 FSNMLIN-----------------PMINLDMLIKL------IQDNY----LLIIDLIN-- 195
F + ++ L+ L +L I DN L+ +++
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 196 -NHEINDTVSLLVDLEKKIDQETLAIQNDKQ------LKQLE 230
E N L+ + + +A+ + + KQ++
Sbjct: 553 PKIEEN----LICSKYTDLLR--IALMAEDEAIFEEAHKQVQ 588
Score = 53.7 bits (128), Expect = 5e-07
Identities = 72/505 (14%), Positives = 148/505 (29%), Gaps = 139/505 (27%)
Query: 4 FTILSMIVFKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQM 63
+ + + FK F L + + +S V+ + L ++ + IK+
Sbjct: 174 YKVQCKMDFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI- 230
Query: 64 TNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQI 123
+LR L + + + +N LL L +Q A+ +I
Sbjct: 231 --QAELRRLLKSK------PY---------ENCLL--VLLNVQN---AKAWNAFNLSCKI 268
Query: 124 LEMEKNIQLKDDEINNLNENLTSSLAENHI---LNSQMTLVNNLFSNML----------- 169
L + Q+ D L+ T+ ++ +H L +L L
Sbjct: 269 LLTTRFKQVTDF----LSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREV 322
Query: 170 --INPMINLDMLIKLIQD------NYLLIIDLINNHEINDTVSLLVD-LEKKIDQ---ET 217
NP L ++ + I+D N+ +N ++ + ++ LE + +
Sbjct: 323 LTTNPRR-LSIIAESIRDGLATWDNWK----HVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 218 LAI-QNDKQL--KQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTSKDSANIQLDHAE 274
L++ + L + + V V + VE ++ +I L+
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 275 TNTNEESPADQDETNSTTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGILTVTWGY 334
NE L H S++ + + I Y
Sbjct: 438 KLENE------------YAL---H----------RSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 335 LARLRLQIKCLKTSHPLLRDHTCTIVRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLA 394
SH + H I + + ++L +L
Sbjct: 473 FY-----------SH--IGHHLKNIEHPERMTLFRM-VFLD-FRFLE------------Q 505
Query: 395 RLR---LQIKCLKTSHPLLRDHKIKVVAEHISTEDKPEDKANLNE-----PSPCET---- 442
++R + L+ +K +I ++ P+ + +N P E
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ--LKFYKPYI-CDNDPKYERLVNAILDFLPK-IEENLIC 561
Query: 443 SDEKDIV------KGNVVDYEATKQ 461
S D++ + + EA KQ
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 46.4 bits (109), Expect = 8e-05
Identities = 81/655 (12%), Positives = 180/655 (27%), Gaps = 180/655 (27%)
Query: 31 VFKVSDLKTRLKDVEKKLLESPEEIKIEY--EKQMTNYKKLRELYEQRAAAAELEHKTMI 88
+ D + + LL EE+ ++ E NYK L + + + I
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 89 EK--ELAKNALLEAKL----KEIQEEIQAQLEKYKENK-----------KQILEMEKNIQ 131
E+ L + + AK + +++ L + + K K + ++
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD---V 170
Query: 132 LKDDEINNLNEN----LTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNY 187
++ + L L + + + ++ L + N D +
Sbjct: 171 CLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--- 225
Query: 188 LLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESN 247
H I + L L+ K + L + L N V++
Sbjct: 226 -------RIHSIQAELRRL--LKSKPYENCLLV--------LLN------------VQNA 256
Query: 248 QTSTKAVESN-QT-STSKDSANIQLDHAETNTNEESPADQDETNSTTTLDKSHIQKEITR 305
+ A + + T++ D ++ TT T
Sbjct: 257 KA-WNAFNLSCKILLTTRFKQVT-----------------DFLSAATT----------TH 288
Query: 306 VISNSLISGLSP--SLG----WLGTRGILTVTWGYLARLRLQIKCLKTSHPLLRDHTCTI 359
+ + L+P +L R L ++ T++P +I
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCR---------PQDLPREVL---TTNPRR----LSI 332
Query: 360 VRAHLSPVHKHTLYLKRLGWLGTRGILTVTWGYLARLRLQIK-CLKTSHP-LLRDH---- 413
+ + K + +L I+ L P R
Sbjct: 333 IAESIRDGLATWDNWKHVN--------------CDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 414 -------KI--KVVA---EHISTEDKPEDKAN-LNEPSPCETSDEKDIVKGNVVDYEATK 460
I +++ + D N L++ S E K + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVE----KQPKESTISIPSIYL 433
Query: 461 QTRTESPSEEQKSKQLIRQDRITEETDESRPFESAECSRTSQPEVEN----HISNTDTIE 516
+ + + +E + ++ I + D P ++ HI
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFD---------SDDLIPPYLDQYFYSHI------- 477
Query: 517 TAY----SEMSEPIEELHTERLSTETLQREPITSVPTATSNTTLPSEPSVSRTRTPEEIL 572
+ E E + L L+++ I TA N + ++ + + + +
Sbjct: 478 -GHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAW-NASGSILNTLQQLKFYKPYI 534
Query: 573 EARNARLKRLEDQCKNLFHKMS---LTSQRSDTLSERLEELHDYYGTSNERHSPR 624
+ + +RL + + K+ + S+ +D L L + + R
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 44.8 bits (105), Expect = 3e-04
Identities = 29/244 (11%), Positives = 68/244 (27%), Gaps = 57/244 (23%)
Query: 421 HISTEDKPEDKAN-----LNEPSPCETSDEKDIVKGNVVDYEATKQTRTE------SPSE 469
H+ E + E + + D KD+ D + ++ E S
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-----DMPKSILSKEEIDHIIMSKDA 60
Query: 470 EQKSKQLI-----RQDRITE---ETDESRPFE------SAECSRTSQPEVENHISNTDTI 515
+ +L +Q+ + + E ++ E + S +I D +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRL 119
Query: 516 ET---AYSEMSEPIEELHTE-RLSTETLQREPITSV-------------PTATSNTTLPS 558
+++ + + + + R + L+ + S
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 559 EP------SVSRTRTPEEILEARNARLKRLEDQCKNLFHKMSLTSQRSDTLSERLEEL-- 610
++ +PE +LE L +++ + S R ++ L L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 611 -HDY 613
Y
Sbjct: 240 SKPY 243
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.8 bits (173), Expect = 4e-12
Identities = 83/539 (15%), Positives = 157/539 (29%), Gaps = 133/539 (24%)
Query: 131 QLKDDEINNLNENLTSSLAENHILNSQMTLVNNL--FSNMLINP--MINLDMLIKLI--- 183
QL++ L E T A + + LV + + L+ P + D ++ L
Sbjct: 32 QLQEQFNKILPEP-TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 184 -QDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLEN--YETPMSSAM 240
++ YL D+ H + LL + + + + I+N + + ++ +SA+
Sbjct: 91 FENCYLEGNDI---HAL--AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 241 VEAVESNQTSTKAV------------E-SNQTSTSKDSANIQLDHAETNTNEESPADQDE 287
AV A+ E + T + + +E D
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 288 TNS-TTTLDKSHIQKEITRVISNSLISGLSPSLGWLGTRGI----LTVTWGYLARLRLQI 342
T L+ I + N +P +L + I + V LA +
Sbjct: 206 EKVFTQGLN-------ILEWLEN---PSNTPDKDYLLSIPISCPLIGVI--QLAHYVVTA 253
Query: 343 KCLKTSHPLLRDHTCT-------IVRAH-LSPV------HKHTL-YLKRLGWLGTRGILT 387
K L + LR + +V A ++ + L ++G R
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 388 VTWGYLARLRLQIKCLKTS--------HPLL--RDHKIKVVAEHISTEDK--PEDK---- 431
L L+ S P+L + + V ++++ + P K
Sbjct: 314 Y-----PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 432 ANLNEPSPCETSDEKDIVKGNVVDYEA-------------TKQTRTESPSEEQKSKQLIR 478
+ +N +V G Q+R P E+K K R
Sbjct: 369 SLVNGAKNL-------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--PFSERKLKFSNR 419
Query: 479 QDRITEETDESRPFESAECSRTSQPEVENHISNTDTIETAYSEMSEPIEELHTE-----R 533
+ PF S + + + + + ++ P+ T R
Sbjct: 420 FLPVAS------PFHS-HLLVPASDLINKDLVK-NNVSFNAKDIQIPVY--DTFDGSDLR 469
Query: 534 -LSTETLQR--EPITSVP------TATSNTTL----PSEPSVSRTRTPEEILEARNARL 579
LS +R + I +P T T + P S T + R+
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNKDGTGVRV 527
Score = 58.5 bits (141), Expect = 2e-08
Identities = 73/567 (12%), Positives = 159/567 (28%), Gaps = 164/567 (28%)
Query: 500 TSQPEVENHISNTDTIETAYSEMSEPIEELHTERLSTETLQREPITSVPTATSNTTLPSE 559
+++P +H ++E + P LQ + +P T E
Sbjct: 5 STRPLTLSH----GSLEHV---LLVP-TASF---FIASQLQEQFNKILPEPTEGFAADDE 53
Query: 560 PSVSRTRTPEEILEARNAR-LKRLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGTSN 618
P+ TP E++ + L + + S Q L+ L E + Y N
Sbjct: 54 PT-----TPAELV----GKFLGYVSSLVEP-----SKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 619 ERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANVPDSQENSQESDDTRRRSAETNESHS 678
+ H+ +DT L + + ++A + + ++S+ R+ +
Sbjct: 100 DIHALAAKLLQ---ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 679 ----GVSGNVSD----LQDRIDTRLKSSPEINE-CTSAVSAVSEESSGLRSVDAIRP-VL 728
G GN D L+D T + + + +SE + + L
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 729 N-----HDEMTRRNVEAESRADAV----------VQDRIDTR-LKSSPG-INECTSA--- 768
N + + + + + + L +PG +
Sbjct: 214 NILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 769 -----VSAV------SEES--------------SGLRSVDAIRPVLNHDEMTRRNVEAES 803
V+AV S ES G+R ++ ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC---------YEAYPNTSLPPSI 323
Query: 804 RADAVVQGQEKPRP-LT-NGVCLKTCVPMH------STPPESNI-LA---TTRSVIL--- 848
D++ + P P L+ + + + V + P + ++ +++++
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 849 P--LVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELE------ 900
P L L L+ K + + R + +R
Sbjct: 383 PQSLYG-LNLTLRKA----------------KAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 901 --HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQI----LEMEKNIQLKDDEI 954
H + LL I +++ + QI ++++ I
Sbjct: 426 PFH----------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 955 N-NLNENLTS---------SLAENHIL 971
+ + + + HIL
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 50.0 bits (119), Expect = 8e-06
Identities = 102/606 (16%), Positives = 180/606 (29%), Gaps = 221/606 (36%)
Query: 721 VDAI--RP-VLNHDEMTRR-NVEAESRADA-VVQDRIDTRL----KSSPGINECTSA--- 768
+DA RP L+H + V S A +Q++ + L + +E T+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 769 -------VSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQGQEKPRPLTNG 821
VS++ E S + + L E + ++G +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE------------NCYLEGND-------- 100
Query: 822 VCLKTCVPMHSTPPESNILATTRSVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMT 881
+H+ L + L L++ + L+++ E IK
Sbjct: 101 --------IHA-----------------LAAKL---LQENDTTLVKTKELIK-------- 124
Query: 882 NYKKLRELYEQRAAAAELEHKTMIEKELAKNALLE------AKLKEI---Q-------EE 925
NY R A K + +AL A+L I Q EE
Sbjct: 125 NY------ITARIMAKRPFDKK------SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985
++ + Y L D I E L+ + T N+
Sbjct: 173 LRDLYQTYHV-------------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-W 218
Query: 986 LINPMINLDM-----------LIKLIQ-DNYLLIIDLINNH--EINDTVSLLVDLEKKID 1031
L NP D LI +IQ +Y++ L+ E+ + + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL- 277
Query: 1032 QETLAIQNDKQLKQLENYETPMSSAMVEA----VESNQT--STSKDSANIQLDHAETNTN 1085
+AI + E++ + A+ V + +TS + ++ D E N
Sbjct: 278 VTAVAIA---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEG 333
Query: 1086 EESPADQDETNSTTTLDKSHIQKEIA--N-NLPKVWRILIELLNTHQEQYENNDVNENFE 1142
SP S + L + +Q + N +LP ++ I L+N + N
Sbjct: 334 VPSPM-----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK----------NL- 377
Query: 1143 SCYKNIKTNTGKTHQVIS---VSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHS 1199
V+S S L L L L K K + + R+ S
Sbjct: 378 ---------------VVSGPPQS-----LYGLNL-------TLRKAKAPSGLDQSRIPFS 410
Query: 1200 EQRLNTVTTELKKTWNVVNKLKLQHKQL-----YTHEKILKYELKHKRNIINDLKIDLEY 1254
+R KLK ++ L + H +L + + DL
Sbjct: 411 -ER----------------KLKFSNRFLPVASPF-HSHLLV-------PASDLINKDLVK 445
Query: 1255 VREKWD 1260
++
Sbjct: 446 NNVSFN 451
Score = 42.0 bits (98), Expect = 0.002
Identities = 76/561 (13%), Positives = 173/561 (30%), Gaps = 193/561 (34%)
Query: 1067 STSKDSANIQLD---HAETNTNEESPADQDETNSTTTLDK---SHIQKEI-ANNLPKVWR 1119
T+ QL + E A DE + L ++ + + + + +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 1120 ILIELLNTHQEQYENNDVNENFESCY---KNIKTNTGKTHQVIS-----VSQTFIRLKHL 1171
+L L FE+CY +I H + + T ++ K L
Sbjct: 83 VLNLCLT-------------EFENCYLEGNDI-------HALAAKLLQENDTTLVKTKEL 122
Query: 1172 ILEKNHLTNQLAKLKTLNNHLEIRLNHSEQ----RL--------NTVT--TELKKTWNV- 1216
I KN++T ++ + + L + +L NT EL+ +
Sbjct: 123 I--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 1217 ---VNKLKLQHKQLYTHEKILKYELKHKRNIINDLK--IDLEYVREKWDLVKEKNEQNEL 1271
V L + + L ++ + +++ +W ++ + +
Sbjct: 181 HVLVGDL------IKFSAETLSELIRTTLDAEKVFTQGLNIL----EW--LENPSNTPDK 228
Query: 1272 DYKVLRKEFAL---------------RRLQYDGGRSTSE-SGISTDTEDDNVEIV----- 1310
DY +L + + L + G S G + ++ +V
Sbjct: 229 DY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG----LVTAVAI 283
Query: 1311 ---ETNDESEDDKSEVVE------TQSEHDVPHTNSVMSIEEDDQDEVEELESE-TNVSA 1360
++ + + + + P+T+ SI ED + E + S ++S
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 1361 INNEQEVERTEVTDNTSAVIPSRETIENEAVPVSV--SPQEDIVDTITTSRTDHIESHQE 1418
+ EQ V+ + + T++ +P+ + +E +S+ + +V + +S
Sbjct: 344 LTQEQ-VQ--DYVNKTNSHLPAGKQVE-----ISLVNGAKNLVV-------SGPPQSLYG 388
Query: 1419 INSS-RETKEIPGTSDANVNYSQQFLNNKITIKTIGGKIKVVAEH--ISTEDKPEDKANL 1475
+N + R+ K G + + +S++ K+K +++
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSER-------------KLKFSNRFLPVAS---------- 425
Query: 1476 NEPSHCPFWYFWQEKGKEKYKPVTNRQIKNFWKIFGKFKTVNKNFMRITLCASFPEFQGG 1535
P H P + +NK+ ++ + F
Sbjct: 426 --PFHSHL-----------LVPAS--------------DLINKDLVKNNV-----SFNA- 452
Query: 1536 EVSVDETSNLQKSEAQIPIFD 1556
+ QIP++D
Sbjct: 453 ------------KDIQIPVYD 461
Score = 40.8 bits (95), Expect = 0.005
Identities = 50/316 (15%), Positives = 91/316 (28%), Gaps = 97/316 (30%)
Query: 1129 QEQ------YENNDV-NENFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQ 1181
QEQ Y+ + + + + K G S+ I+ N
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYG-----FSILD--------IVINN--PVN 1671
Query: 1182 LAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHK 1241
L IR N+S T+ KT + ++ +E Y +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI---------NEHSTSYTFRS- 1721
Query: 1242 RNIINDLKIDLEYVREKWDLVKEKNEQ------NELDYKVLRKEFALRRLQYDGGRS--- 1292
EK L + Q + ++ L+ + + G S
Sbjct: 1722 ---------------EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 1293 ----TSESG-ISTDTEDDNVEIVE-----TNDESEDDKSEVVETQSEHDV----PHTNSV 1338
S + +S + VE+V D+ +S + + P +
Sbjct: 1767 YAALASLADVMSIE---SLVEVVFYRGMTMQVAVPRDE----LGRSNYGMIAINPGRVAA 1819
Query: 1339 MSIEEDDQDEVEELESETN--VSAIN----NEQEV--------ER-TEVTDNTSAVIPSR 1383
+E Q VE + T V +N N+Q V + T V +
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL----- 1874
Query: 1384 ETIENEAVPVSVSPQE 1399
+ I+ + S+S +E
Sbjct: 1875 QKIDIIELQKSLSLEE 1890
Score = 38.5 bits (89), Expect = 0.027
Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 51/159 (32%)
Query: 1475 LNEPSHCPFWYFWQEKGK---EKYKPVTNRQIKNFWKIFGK-FKTVNKNFMRITLCASFP 1530
+N P + +F EKGK E Y + I + K FK +N++ T
Sbjct: 1666 INNPVNLTI-HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------ 1718
Query: 1531 EFQGGEVSVDETSNLQ--------------KSEAQIPIFDKGIGTHYIKENMVSYQLG-- 1574
F+ + + T Q KS+ IP G H S LG
Sbjct: 1719 -FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-H-------S--LGEY 1767
Query: 1575 ---------FSFRKAPRLTKVVEQGCPIADRFQIDRDQH 1604
S + V +G + + + RD+
Sbjct: 1768 AALASLADVMSIESLVEV--VFYRG--MTMQVAVPRDEL 1802
Score = 33.1 bits (75), Expect = 1.0
Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 92/301 (30%)
Query: 24 TSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNY------KKLRELYEQRA 77
TS + V+ +D + S +I I +T + K++RE Y
Sbjct: 1638 TSKAAQDVWNRADNHFK-----DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS--- 1689
Query: 78 AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI 137
MI + + L K ++I +EI Y + +
Sbjct: 1690 --------AMIFETIVDGKL---KTEKIFKEINEHSTSY------TFR-------SEKGL 1725
Query: 138 NNLNEN-----LTSSLAENHILNSQ-MTLVNNLF--------------SNMLINPMINLD 177
+ + A L S+ + + F ++++ +++
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM-----SIE 1780
Query: 178 MLIKLIQDNY--LLIIDLINNHEINDTVSLLVDL-----EKKIDQETLAIQNDKQLKQLE 230
L++++ Y + + + E+ + ++ + QE L ++ K+
Sbjct: 1781 SLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR-- 1836
Query: 231 NYETPMSSAMVEAV---ESNQT-----STKAVE--SNQTSTSKDSANIQLDH-AETNTNE 279
+ +VE V NQ +A++ +N + K I + ++ + E
Sbjct: 1837 ------TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK-LQKIDIIELQKSLSLE 1889
Query: 280 E 280
E
Sbjct: 1890 E 1890
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 55.5 bits (134), Expect = 2e-07
Identities = 31/214 (14%), Positives = 87/214 (40%), Gaps = 15/214 (7%)
Query: 870 EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTM----IEKELAKNALLEAKLKEIQEE 925
++ Y + + L+ Y + A EL+ + +E+ + LE K+ ++Q +
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 926 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 985
I Q ++YK +++ +E + +++ + E L S E +++
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV--------LS 988
Query: 986 LINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQ 1045
L + L + Q I + + ++ ++T L+ +L+++ L + ++ ++
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYK-HETEQLVSELKEQNTL--LKTEKEELNRR 1045
Query: 1046 LENYETPMSSAMVEAVESNQTSTSKDSANIQLDH 1079
+ + ++ M + + D + +L +
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 54.0 bits (130), Expect = 5e-07
Identities = 29/198 (14%), Positives = 82/198 (41%), Gaps = 15/198 (7%)
Query: 53 EEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTM----IEKELAKNALLEAKLKEIQEE 108
++ Y + + L+ Y + A EL+ + +E+ + LE K+ ++Q +
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 109 IQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLVNNLFSNM 168
I Q ++YK +++ +E + +++ + E L S E +++
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV--------LS 988
Query: 169 LINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQ 228
L + L + Q I + + ++ ++T L+ +L+++ L + ++ ++
Sbjct: 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYK-HETEQLVSELKEQNTL--LKTEKEELNRR 1045
Query: 229 LENYETPMSSAMVEAVES 246
+ + ++ M + +
Sbjct: 1046 IHDQAKEITETMEKKLVE 1063
Score = 37.4 bits (87), Expect = 0.052
Identities = 26/168 (15%), Positives = 61/168 (36%), Gaps = 10/168 (5%)
Query: 1167 RLKHLILEKNHLTNQLAKL-------KTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNK 1219
++ L N++ +L L ++N+ E +T T +L+ +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 1220 LKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKE 1279
+ + K L+ E+ R ++ + + + + E D K + EQ + L+++
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQ 1031
Query: 1280 FALRRLQYDGGRSTSESGISTDTEDDNVEIVETNDESEDDKSEVVETQ 1327
L + + + TE ++VE + E D ++
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 50.6 bits (121), Expect = 5e-06
Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 18/232 (7%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL 92
++ DL+ +L++ E K++ EK + K++++ + + K
Sbjct: 956 QMLDLEEQLEEEEAAR------QKLQLEKVTAD-GKIKKMEDDIL-----IMEDQNNKLT 1003
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 152
+ LLE ++ ++ + + EK K K + E I + + ++
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKR 1063
Query: 153 ILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNH-EINDTVSLLVDLEK 211
L + + ++ + + L K ++ + L + + N+ + + +LE
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES 1123
Query: 212 KIDQ-----ETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVESNQ 258
I E+ +K KQ + + + E ++ T+ E
Sbjct: 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Score = 49.4 bits (118), Expect = 1e-05
Identities = 48/265 (18%), Positives = 101/265 (38%), Gaps = 20/265 (7%)
Query: 35 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK 94
+ L+ +L+ + E+ E K+ + L E+ + E + EK+ +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 95 NAL--LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN----------E 142
+ LE +L+E + Q + +I +ME +I + +D+ N L
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 143 NLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDT 202
+LT++LAE +T + N +M+ + L K Q+ + L E +D
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL--EGESSDL 1072
Query: 203 VSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTKAVESNQTSTS 262
+ +L+ +I + QL + E + + + + K + ++ S
Sbjct: 1073 HEQIAELQAQIA------ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 263 KDSANIQLDHAETNTNEESPADQDE 287
+++ + A N E+ D E
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSE 1151
Score = 47.1 bits (112), Expect = 5e-05
Identities = 31/206 (15%), Positives = 76/206 (36%), Gaps = 21/206 (10%)
Query: 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELA 910
+ DL+ +L++ E K++ EK + K++++ + + K
Sbjct: 957 MLDLEEQLEEEEAAR------QKLQLEKVTAD-GKIKKMEDDIL-----IMEDQNNKLTK 1004
Query: 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHI 970
+ LLE ++ ++ + + EK K K + E I + + ++
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 971 LNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNH--------EINDTVSL 1022
L + + ++ + + L K ++ + L + +I + S
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 1023 LVDLEKKIDQETLAIQN-DKQLKQLE 1047
+ DL++ ++ E A +KQ + L
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLS 1150
Score = 45.6 bits (108), Expect = 2e-04
Identities = 39/210 (18%), Positives = 84/210 (40%), Gaps = 15/210 (7%)
Query: 852 SDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK 911
+ L+ +L+ + E+ E K+ + L E+ + E + EK+ +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Query: 912 NAL--LEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN----------E 959
+ LE +L+E + Q + +I +ME +I + +D+ N L
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 960 NLTSSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDT 1019
+LT++LAE +T + N +M+ + L K Q+ + L E +D
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL--EGESSDL 1072
Query: 1020 VSLLVDLEKKIDQETLAIQN-DKQLKQLEN 1048
+ +L+ +I + + +++L+
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Score = 41.7 bits (98), Expect = 0.002
Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 7/208 (3%)
Query: 1167 RLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKLKLQHKQ 1226
R++ L + K++ LE +L E + E + K++
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Query: 1227 LYTHEKILKYELKHKRNIINDLKIDLEYVREK-WDLVKEKNEQNELDYKVLRKEFALRRL 1285
+ L E K ++DL +L EK +L K KN+ + ++ + +
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 1286 QYDGGRSTSESGISTDTEDDNVEIVETNDESEDDKSEVVETQSEHDVPHT--NSVMSIEE 1343
+ + + + + ++ D + +I E + + K+++ + + E S +
Sbjct: 1055 RQELEKIKRK--LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 1344 DDQDEVEELESETNVSAINNEQEVERTE 1371
+ ++ ELES +S + + E E+
Sbjct: 1113 NALKKIRELESH--ISDLQEDLESEKAA 1138
Score = 40.6 bits (95), Expect = 0.005
Identities = 43/260 (16%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 857 RLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLE 916
L+ +L E ++ + + + Y + E+ R AA + E + ++ + A+ E
Sbjct: 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV-RLAAKKQELEEILHEMEARIEEEE 940
Query: 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLN---ENLTSSLAENHILNS 973
+ +++Q E + ++ + ++Q+ E E Q E + + + + N+
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 974 QMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQE 1033
++T L + + NL + ++ + L N HE S++ +LE ++ +E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKN----LTKLKNKHE-----SMISELEVRLKKE 1051
Query: 1034 TLAIQN-DKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQ 1092
+ Q +K ++LE SS + E + Q ++ A + E D+
Sbjct: 1052 EKSRQELEKIKRKLEGE----SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107
Query: 1093 DETNSTTTLDKSHIQKEIAN 1112
+ ++ I++
Sbjct: 1108 TSQKNNALKKIRELESHISD 1127
Score = 39.4 bits (92), Expect = 0.012
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 851 VSDLKTRLKDVE------KKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK-- 902
VSDL T L + E KL E + E E ++ +K R+ E+ E E
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 903 -TMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENK-------KQILEMEKNIQLKDDEI 954
I + A+ A L+A+L + +EE+QA L + ++ K+I E+E +I +++
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 955 NNLNENLTSSLAENHILNSQM 975
+ + + L+ ++
Sbjct: 1133 ESEKAARNKAEKQKRDLSEEL 1153
Score = 37.9 bits (88), Expect = 0.031
Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 11/126 (8%)
Query: 850 LVSDLKTRLKDVE---KKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 906
+L+ + +E L E E++ + + K E + A E + +
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE-DETSQKN 1112
Query: 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLA 966
L K LE+ + ++QE+++++ + +KQ ++ + E+ L L +L
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE-------ELEALKTELEDTLD 1165
Query: 967 ENHILN 972
Sbjct: 1166 TTATQQ 1171
Score = 33.7 bits (77), Expect = 0.75
Identities = 14/110 (12%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKI---EYEKQMTNYKKL-RELYEQRAAAAELEHKTMI 88
++++L+ ++ +++ +L + EE++ E + + +++ E + ++L+ +
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED--L 1132
Query: 89 EKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEIN 138
E E A E + +++ EE++A + ++ ++ + +
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 33.3 bits (76), Expect = 0.85
Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 5/169 (2%)
Query: 1161 VSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTELKKTWNVVNKL 1220
VS L + +LT K +++ + LE+RL E+ + +K + L
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072
Query: 1221 KLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNELDYKVLRKEF 1280
Q +L LK +L K + LE + + +K + E L+++
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 1281 ALRRLQYDGGRSTSESGISTDTEDDNVEIVETNDESEDDKSEVVETQSE 1329
+ R+ +E D ++ + +++ D + E +
Sbjct: 1133 ESEKAA----RNKAEKQKR-DLSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 32.9 bits (75), Expect = 1.1
Identities = 14/109 (12%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 851 VSDLKTRLKDVEKKLLESPEEIKI---EYEKQMTNYKKL-RELYEQRAAAAELEHKTMIE 906
+++L+ ++ +++ +L + EE++ E + + +++ E + ++L+ +E
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED--LE 1133
Query: 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEIN 955
E A E + +++ EE++A + ++ ++ + +
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 42.3 bits (100), Expect = 0.002
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 37 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK-TMIEKELAKN 95
++ + + LL+ I + E T E + ++ K +E +
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 96 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILN 155
LE + I AQL + N L K+ + + + +
Sbjct: 936 QSLEGQSNSDLLSILAQLTELNYNGVPELTERKD-TFFAQQWTGVKSSAETYKNTLLAEL 994
Query: 156 SQMTLVNNL 164
++ + +L
Sbjct: 995 ERLQKIEDL 1003
Score = 42.3 bits (100), Expect = 0.002
Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK-TMIEKELAKN 912
++ + + LL+ I + E T E + ++ K +E +
Sbjct: 876 IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935
Query: 913 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILN 972
LE + I AQL + N L K+ + + + +
Sbjct: 936 QSLEGQSNSDLLSILAQLTELNYNGVPELTERKD-TFFAQQWTGVKSSAETYKNTLLAEL 994
Query: 973 SQMTLVNNL 981
++ + +L
Sbjct: 995 ERLQKIEDL 1003
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 40.8 bits (96), Expect = 0.004
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
Query: 36 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK-TMIEKELAK 94
++ + + LL+ I + E T E + ++ K +E +
Sbjct: 867 RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 926
Query: 95 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 154
LE + I AQL + N E+ + + + +
Sbjct: 927 CQSLEGQSNSDLLSILAQLTELNYN-GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAE 985
Query: 155 NSQMTLVNNL 164
++ + +L
Sbjct: 986 LERLQKIEDL 995
Score = 40.8 bits (96), Expect = 0.004
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
Query: 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHK-TMIEKELAK 911
++ + + LL+ I + E T E + ++ K +E +
Sbjct: 867 RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 926
Query: 912 NALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHIL 971
LE + I AQL + N E+ + + + +
Sbjct: 927 CQSLEGQSNSDLLSILAQLTELNYN-GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAE 985
Query: 972 NSQMTLVNNL 981
++ + +L
Sbjct: 986 LERLQKIEDL 995
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 0.008
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 51 SPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 110
+ + E E +K RE EQR L+ + +E +E+ +
Sbjct: 76 QADRLTQEPESI----RKWRE--EQRK---RLQELD--AAS-------KVMEQEWREKAK 117
Query: 111 AQLEKYKENKKQILEMEKNIQLKDDE--INNLNENL 144
LE++ + + + +E K D+ + ++
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 38.2 bits (88), Expect = 0.008
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 868 SPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQ 927
+ + E E +K RE EQR L+ + +E +E+ +
Sbjct: 76 QADRLTQEPESI----RKWRE--EQRK---RLQELD--AAS-------KVMEQEWREKAK 117
Query: 928 AQLEKYKENKKQILEMEKNIQLKDDE--INNLNENL 961
LE++ + + + +E K D+ + ++
Sbjct: 118 KDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 36.7 bits (84), Expect = 0.029
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 18/80 (22%)
Query: 45 EKKLLESPEEIK---------IEYEKQMTNYKKLRELYEQRAAAAELE-----HKTMIEK 90
+L + PE I+ ++ E + +E E+ A +LE +EK
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQ-ELDAASKVMEQEWREK--AKKDLEEWNQRQSEQVEK 133
Query: 91 ELAKNALLEAK-LKEIQEEI 109
N + + ++ +I
Sbjct: 134 NKINNRIADKAFYQQPDADI 153
Score = 36.7 bits (84), Expect = 0.029
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 18/80 (22%)
Query: 862 EKKLLESPEEIK---------IEYEKQMTNYKKLRELYEQRAAAAELE-----HKTMIEK 907
+L + PE I+ ++ E + +E E+ A +LE +EK
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQ-ELDAASKVMEQEWREK--AKKDLEEWNQRQSEQVEK 133
Query: 908 ELAKNALLEAK-LKEIQEEI 926
N + + ++ +I
Sbjct: 134 NKINNRIADKAFYQQPDADI 153
Score = 33.6 bits (76), Expect = 0.29
Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 568 PEEILEARNARLKRLEDQCKNLFHKMSLTSQRSDTLSERLEELHDYYGTSNERHSPRRHR 627
PE I + R + KRL++ + + ++L ++ +E+ +++
Sbjct: 84 PESIRKWREEQRKRLQELDAA------SKVMEQEWREKAKKDLEEWNQRQSEQV--EKNK 135
Query: 628 EGSQDSDDTRLRSPENE 644
++ +D + P+ +
Sbjct: 136 INNRIADKAFYQQPDAD 152
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A
{Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Length = 86
Score = 34.9 bits (81), Expect = 0.027
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 62 QMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKE--N 119
Q++ + E + E + A E ++ E++ +Q QL++Y+E +
Sbjct: 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63
Query: 120 KKQILEME 127
K L+ME
Sbjct: 64 IKLALDME 71
Score = 34.9 bits (81), Expect = 0.027
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 879 QMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKE--N 936
Q++ + E + E + A E ++ E++ +Q QL++Y+E +
Sbjct: 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63
Query: 937 KKQILEME 944
K L+ME
Sbjct: 64 IKLALDME 71
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 36.8 bits (85), Expect = 0.054
Identities = 23/206 (11%), Positives = 65/206 (31%), Gaps = 19/206 (9%)
Query: 42 KDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAK 101
+ + + ++ I+ E + +LR Y + A
Sbjct: 88 DEEDGDDDSADDDNSIDPELAREKFAELRAQYVV------------TRDTIKAKGRSHAT 135
Query: 102 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 161
+E ++ ++++ KQ + ++++ D + + E + + +
Sbjct: 136 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI- 194
Query: 162 NNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQ 221
LF+ + + + L + E++ + L +E++ +
Sbjct: 195 -TLFTGNETSDTWFNAAIAMNKPWSEKL---HDVSEEVHRALQKLQQIEEETGLTIEQV- 249
Query: 222 NDKQLKQLENYETPMSSAMVEAVESN 247
+++ E A E VE+N
Sbjct: 250 -KDINRRMSIGEAKARRAKKEMVEAN 274
Score = 36.8 bits (85), Expect = 0.054
Identities = 23/206 (11%), Positives = 65/206 (31%), Gaps = 19/206 (9%)
Query: 859 KDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAK 918
+ + + ++ I+ E + +LR Y + A
Sbjct: 88 DEEDGDDDSADDDNSIDPELAREKFAELRAQYVV------------TRDTIKAKGRSHAT 135
Query: 919 LKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978
+E ++ ++++ KQ + ++++ D + + E + + +
Sbjct: 136 AQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI- 194
Query: 979 NNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQ 1038
LF+ + + + L + E++ + L +E++ +
Sbjct: 195 -TLFTGNETSDTWFNAAIAMNKPWSEKL---HDVSEEVHRALQKLQQIEEETGLTIEQV- 249
Query: 1039 NDKQLKQLENYETPMSSAMVEAVESN 1064
+++ E A E VE+N
Sbjct: 250 -KDINRRMSIGEAKARRAKKEMVEAN 274
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 34.1 bits (79), Expect = 0.059
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 54 EIKIEYEKQMTNY-KKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 112
+ + +K+ ++++EL E A + + M+ E ++ EI++++Q Q
Sbjct: 12 NLYFQGQKESRACLERIQEL-EDLLAKEKDNSRRMLTD-------KEREMAEIRDQMQQQ 63
Query: 113 LEKYKE--NKKQILEME 127
L Y++ + K L+ME
Sbjct: 64 LNDYEQLLDVKLALDME 80
Score = 34.1 bits (79), Expect = 0.059
Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 871 EIKIEYEKQMTNY-KKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQ 929
+ + +K+ ++++EL E A + + M+ E ++ EI++++Q Q
Sbjct: 12 NLYFQGQKESRACLERIQEL-EDLLAKEKDNSRRMLTD-------KEREMAEIRDQMQQQ 63
Query: 930 LEKYKE--NKKQILEME 944
L Y++ + K L+ME
Sbjct: 64 LNDYEQLLDVKLALDME 80
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 36.5 bits (83), Expect = 0.075
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 47 KLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQ 106
K ES + ++ ++ +T +K E+ +A +A+ K + E + ++E K + Q
Sbjct: 466 KSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ 525
Query: 107 EEI---QAQLEKYKENKKQILEMEKNIQLKDDE 136
E + ++E + + E ++L++ E
Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQE 558
Score = 30.7 bits (68), Expect = 5.0
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Query: 867 ESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEI 926
E + ++ ++ MT+ + + E A +L ++ ++ +
Sbjct: 458 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 517
Query: 927 QAQLEKYKENKKQILE-MEKNIQLKDDEINNLNEN 960
+ + Y+E+ KQ+ E ME + E
Sbjct: 518 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Score = 30.3 bits (67), Expect = 5.8
Identities = 16/111 (14%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKE 91
+V +K K+L E++ + E+ M ++ +E +Q E + ++++
Sbjct: 490 EVERVKAESAQASAKMLH---EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE- 545
Query: 92 LAKNALLEAKLKEIQEEIQAQLE-KYKENKKQILEMEKNIQLKDDEINNLN 141
+ L KL+E ++ ++ + + + K +I +++ +++ + ++
Sbjct: 546 --QERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT--KMRRRKACTIS 592
Score = 30.3 bits (67), Expect = 6.0
Identities = 15/107 (14%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKK-LRELYEQRAAAAELEHKTMIEKELAKN 912
+K K+L E++ + E+ M ++ +E +Q E + ++++ +
Sbjct: 494 VKAESAQASAKMLH---EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE---QE 547
Query: 913 ALLEAKLKEIQEEIQAQLE-KYKENKKQILEMEKNIQLKDDEINNLN 958
L KL+E ++ ++ + + + K +I +++ +++ + ++
Sbjct: 548 RTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT--KMRRRKACTIS 592
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.7 bits (79), Expect = 0.24
Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 8/113 (7%)
Query: 848 LPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEK 907
L + + + +L + EE++ + +++ + + E+ K + +
Sbjct: 318 FSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQD 377
Query: 908 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960
E K LE K K + +E+ A + +K E+ ++ + L +
Sbjct: 378 EKKK---LEDKKKSLDDEVNAF-----KQRKTAAELLQSQGSQAGGSQTLKRD 422
Score = 34.3 bits (78), Expect = 0.37
Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
Query: 16 ILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQ 75
+ +G T S + + + +L + EE++ + +++ + + E+
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
Query: 76 RAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDD 135
K + + E K LE K K + +E+ A + +K E+ ++ +
Sbjct: 363 ELHEKFDRLKKLHQDEKKK---LEDKKKSLDDEVNAF-----KQRKTAAELLQSQGSQAG 414
Query: 136 EINNLNEN 143
L +
Sbjct: 415 GSQTLKRD 422
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.25
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 9/31 (29%)
Query: 223 DKQ-LKQLEN----YETPMSS-AM-VEA-VE 245
+KQ LK+L+ Y S+ A+ ++A +E
Sbjct: 18 EKQALKKLQASLKLYA-DDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.25
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 9/31 (29%)
Query: 1040 DKQ-LKQLEN----YETPMSS-AM-VEA-VE 1062
+KQ LK+L+ Y S+ A+ ++A +E
Sbjct: 18 EKQALKKLQASLKLYA-DDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.28
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 89 EK-ELAKNALLEAKLKEIQEE------IQAQLE 114
EK L K L+A LK ++ I+A +E
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.28
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 10/33 (30%)
Query: 906 EK-ELAKNALLEAKLKEIQEE------IQAQLE 931
EK L K L+A LK ++ I+A +E
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.6
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 619 ERHSPRRHREGSQDSDDTRLRSPENEPLSGVSANV 653
E+ + ++ + S +L + ++ P + A +
Sbjct: 18 EKQALKK-LQAS-----LKLYADDSAPALAIKATM 46
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 35.0 bits (80), Expect = 0.27
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 84 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 143
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 144 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 198
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 199 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 245
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
Score = 35.0 bits (80), Expect = 0.27
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 901 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 961 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 1015
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 1016 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 1062
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 34.8 bits (79), Expect = 0.27
Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 7/171 (4%)
Query: 33 KVSDLKTRLKDVE---KKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 89
KV ++K ++ +E K L + +E + + + + + +L K M
Sbjct: 10 KVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYL 69
Query: 90 KELAKNALLEAKLKEIQEEIQ----AQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT 145
K + K+ E+ + A + K+ + + ++ L T
Sbjct: 70 MLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFT 129
Query: 146 SSLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINN 196
+ Q+ + L L + L LI +
Sbjct: 130 IVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQS 180
Score = 33.7 bits (76), Expect = 0.60
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 7/170 (4%)
Query: 851 VSDLKTRLKDVE---KKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEK 907
V ++K ++ +E K L + +E + + + + + +L K M
Sbjct: 11 VRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLM 70
Query: 908 ELAKNALLEAKLKEIQEEIQ----AQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963
K + K+ E+ + A + K+ + + ++ L T
Sbjct: 71 LDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTI 130
Query: 964 SLAENHILNSQMTLVNNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINN 1013
+ Q+ + L L + L LI +
Sbjct: 131 VAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQS 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 34.3 bits (79), Expect = 0.31
Identities = 6/112 (5%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 36 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEH-----KTMIEK 90
D++ +L EE+ + + + ++ + +A E ++
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
Query: 91 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNE 142
+ + + +++ + +++ + ++ + +
Sbjct: 213 YKSPGLEVLFQGPRG-SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKK 263
Score = 34.3 bits (79), Expect = 0.31
Identities = 6/112 (5%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEH-----KTMIEK 907
D++ +L EE+ + + + ++ + +A E ++
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
Query: 908 ELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNE 959
+ + + +++ + +++ + ++ + +
Sbjct: 213 YKSPGLEVLFQGPRG-SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKK 263
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 31.7 bits (73), Expect = 0.31
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 62 QMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKE--N 119
++ K E E++ E L+ +++ ++EE+ L +Y++ N
Sbjct: 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61
Query: 120 KKQILEME 127
K L++E
Sbjct: 62 VKMALDIE 69
Score = 31.7 bits (73), Expect = 0.31
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 879 QMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKE--N 936
++ K E E++ E L+ +++ ++EE+ L +Y++ N
Sbjct: 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61
Query: 937 KKQILEME 944
K L++E
Sbjct: 62 VKMALDIE 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 33.5 bits (76), Expect = 0.51
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL 92
+ LK ++ E+ L ++ +I +K+M+ K REL R+ E +
Sbjct: 54 EKLALKLQVSKNEQTLQDTNAKIA-SIQKKMSEIKSEREL---RSLNIEEDIAKE----- 104
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 150
++ +++ +Q EI+ + EK ++ KK++LE+EK + + N +N+ +
Sbjct: 105 -RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161
Score = 33.5 bits (76), Expect = 0.51
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 13/131 (9%)
Query: 32 FKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELE---HKTMI 88
++S L + +E + E +++ + K E+ A +L+ ++ +
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLD-KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL 69
Query: 89 EKELAKNALLEAKLKEI---------QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINN 139
+ AK A ++ K+ EI E E+ + ++I ++ I+ K ++ +
Sbjct: 70 QDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQED 129
Query: 140 LNENLTSSLAE 150
L + +
Sbjct: 130 LKKEMLELEKL 140
Score = 32.8 bits (74), Expect = 0.74
Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 853 DLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELE---HKTMIEKEL 909
L + +E + E +++ + K E+ A +L+ ++ ++
Sbjct: 15 HLDKEIDSLEPLIREKRKDLD-KALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 910 AKNALLEAKLKEI---------QEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960
AK A ++ K+ EI E E+ + ++I ++ I+ K ++ +L +
Sbjct: 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133
Query: 961 LTSSLAE 967
+
Sbjct: 134 MLELEKL 140
Score = 32.8 bits (74), Expect = 0.74
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELA 910
LK ++ E+ L ++ +I +K+M+ K REL R+ E +
Sbjct: 55 KLALKLQVSKNEQTLQDTNAKIA-SIQKKMSEIKSEREL---RSLNIEEDIAKE------ 104
Query: 911 KNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAE 967
++ +++ +Q EI+ + EK ++ KK++LE+EK + + N +N+ +
Sbjct: 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQI 161
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 33.7 bits (77), Expect = 0.52
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 85 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI-NNLNEN 143
+T + + ++ L Q A+ + ++ ++ + N N
Sbjct: 344 RTAVINAASGRQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKKKFNLN 403
Query: 144 LTSSLAENHILNSQ 157
NHIL S+
Sbjct: 404 YEEIYILNHILRSE 417
Score = 33.7 bits (77), Expect = 0.52
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 902 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEI-NNLNEN 960
+T + + ++ L Q A+ + ++ ++ + N N
Sbjct: 344 RTAVINAASGRQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKKKFNLN 403
Query: 961 LTSSLAENHILNSQ 974
NHIL S+
Sbjct: 404 YEEIYILNHILRSE 417
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 34.0 bits (77), Expect = 0.53
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 27 TSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKT 86
+S+ V V + R +D ++ ++ EI ++ ++ R E R +
Sbjct: 636 SSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILD 695
Query: 87 MIEKELAKNALLE--AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 131
E E A+ LLE A ++ A+ E + +E E ++
Sbjct: 696 QSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVL 742
Score = 32.9 bits (74), Expect = 1.2
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 851 VSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELA 910
V + R +D ++ ++ EI ++ ++ R E R + E E A
Sbjct: 643 VEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKA 702
Query: 911 KNALLE--AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 948
+ LLE A ++ A+ E + +E E ++
Sbjct: 703 RKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVL 742
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 33.2 bits (76), Expect = 0.59
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 99 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 146
+ +++I EE++ + + QI E+ + ++ + L + L
Sbjct: 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51
Score = 33.2 bits (76), Expect = 0.59
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 916 EAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTS 963
+ +++I EE++ + + QI E+ + ++ + L + L
Sbjct: 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVD 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 33.4 bits (77), Expect = 0.73
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 78 AAAELEH-KTMIEKELAKNALLEAKLKEIQEEIQAQLEKY----KENKK---QILEMEKN 129
A+++ K I K A L+ K+K+ + ++ E + ++ E+ N
Sbjct: 1 GASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60
Query: 130 IQ 131
I+
Sbjct: 61 IR 62
Score = 33.4 bits (77), Expect = 0.73
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 895 AAAELEH-KTMIEKELAKNALLEAKLKEIQEEIQAQLEKY----KENKK---QILEMEKN 946
A+++ K I K A L+ K+K+ + ++ E + ++ E+ N
Sbjct: 1 GASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60
Query: 947 IQ 948
I+
Sbjct: 61 IR 62
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 32.8 bits (75), Expect = 0.91
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 85 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQ 122
+ + E+ + +A ++E+ + + L K + +Q
Sbjct: 385 RLVTERVVRGGQSHDAAVQELDQRVDEILAKRRWIFEQ 422
Score = 32.8 bits (75), Expect = 0.91
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 902 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQ 939
+ + E+ + +A ++E+ + + L K + +Q
Sbjct: 385 RLVTERVVRGGQSHDAAVQELDQRVDEILAKRRWIFEQ 422
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.0 bits (75), Expect = 0.92
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 84 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 143
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 144 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 198
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 199 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 245
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
Score = 33.0 bits (75), Expect = 0.92
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 901 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 961 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 1015
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 1016 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 1062
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 32.0 bits (72), Expect = 1.1
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 16/110 (14%)
Query: 1148 IKTNTGKTHQV-ISVSQTFIRLKHLILEKNHLT----------NQLAKLKTLNN----HL 1192
+KT G+T + + + LK I + + + + +L
Sbjct: 5 VKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDVTYYL 64
Query: 1193 EIRLNHSEQ-RLNTVTTELKKTWNVVNKLKLQHKQLYTHEKILKYELKHK 1241
++L ++ + T KKT + KL Y E K L+ K
Sbjct: 65 SLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQK 114
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E,
botulism, domain organization, endopeptidase,
translocation, hydrolase; 2.65A {Clostridium botulinum}
Length = 1252
Score = 32.9 bits (74), Expect = 1.3
Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 24/193 (12%)
Query: 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT--SS 964
KE AL + ++ I+ I+++ Y +K L + +I + L S
Sbjct: 701 KEQMYQAL-QNQVNAIKTIIESKYNSYTLEEKNELTNKYDI-------KQIENELNQKVS 752
Query: 965 LAENHILNSQMT--LVNNLFSNML---INPMINLDMLIKLIQDNYLLIIDLINNHEINDT 1019
+A N+I + +T ++ L + IN + D +K NY++ I +
Sbjct: 753 IAMNNI-DRFLTESSISYLMKIINEVKINKLREYDENVKTYLLNYIIQHGSILGESQQEL 811
Query: 1020 VSLL-VDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLD 1078
S++ L I + + +DK L N + ++S+ + + +D
Sbjct: 812 NSMVTDTLNNSIPFKLSSYTDDKILISYFN-------KFFKRIKSSSVLNMRYKNDKYVD 864
Query: 1079 HAETNTNEESPAD 1091
+ ++N D
Sbjct: 865 TSGYDSNININGD 877
Score = 32.1 bits (72), Expect = 2.0
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 90 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLT--SS 147
KE AL + ++ I+ I+++ Y +K L + +I + L S
Sbjct: 701 KEQMYQAL-QNQVNAIKTIIESKYNSYTLEEKNELTNKYDI-------KQIENELNQKVS 752
Query: 148 LAENHILNSQMT--LVNNLFSNML---INPMINLDMLIKLIQDNYLLIIDLINNHEINDT 202
+A N+I + +T ++ L + IN + D +K NY++ I +
Sbjct: 753 IAMNNI-DRFLTESSISYLMKIINEVKINKLREYDENVKTYLLNYIIQHGSILGESQQEL 811
Query: 203 VSLL-VDLEKKIDQETLAIQNDKQLKQLEN 231
S++ L I + + +DK L N
Sbjct: 812 NSMVTDTLNNSIPFKLSSYTDDKILISYFN 841
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.3 bits (73), Expect = 1.7
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 84 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 143
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 144 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 198
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 199 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 245
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
Score = 32.3 bits (73), Expect = 1.7
Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 901 HKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNEN 960
H L K +EI E EK K +++ +K IN
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPR 56
Query: 961 LTSSLAENHILNSQMTLVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHE 1015
+ + H +N + + + M INP+I + + K + ++D
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 1016 INDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYETPMSSAMVEAVE 1062
+ + EK E L I+ + + L+ ++ +
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II,
ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.5 bits (71), Expect = 2.6
Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 15/168 (8%)
Query: 917 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 976
K +EI E EK K +++ +K IN + + H +N +
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPRIKPVFGKTHPVNDTIE 72
Query: 977 LVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKID 1031
+ + M INP+I + + K + ++D + + EK
Sbjct: 73 NLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQ 132
Query: 1032 QETLAIQNDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDH 1079
E L I+ + + L+ ++ + ++ I +
Sbjct: 133 IEKLGIKVSEHKESLQKILHGYKKGTLDGDDL--VLEISNALEISSEM 178
Score = 31.5 bits (71), Expect = 2.7
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 100 AKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMT 159
K +EI E EK K +++ +K IN + + H +N +
Sbjct: 21 FKREEIIEMANKDFEKAWIETKDLIKAKK--------INESYPRIKPVFGKTHPVNDTIE 72
Query: 160 LVNNLFSNM----LINPMINLDM-LIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKID 214
+ + M INP+I + + K + ++D + + EK
Sbjct: 73 NLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQ 132
Query: 215 QETLAIQNDKQLKQLENYETPMSSAMVEAVE 245
E L I+ + + L+ ++ +
Sbjct: 133 IEKLGIKVSEHKESLQKILHGYKKGTLDGDD 163
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear
membrane LEFT-handed coiled coil, right-handed coiled
coil; HET: MSE; 2.40A {Homo sapiens}
Length = 74
Score = 28.9 bits (65), Expect = 2.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKE--NKKQILEME 127
A E ++ E++ +Q QL++Y+E + K L+ME
Sbjct: 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48
Score = 28.9 bits (65), Expect = 2.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 910 AKNALLEAKLKEIQEEIQAQLEKYKE--NKKQILEME 944
A E ++ E++ +Q QL++Y+E + K L+ME
Sbjct: 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 31.3 bits (70), Expect = 2.7
Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 37 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA----AAAELEHKTMIEKEL 92
+T ++ K+ E + + + + ++ + Y QR+ A ++ + +
Sbjct: 106 KRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQAS 165
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 131
+ + + + +EE QA+ ++ + + + Q
Sbjct: 166 PGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQ 204
Score = 31.3 bits (70), Expect = 2.7
Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRA----AAAELEHKTMIEKEL 909
+T ++ K+ E + + + + ++ + Y QR+ A ++ + +
Sbjct: 106 KRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQAS 165
Query: 910 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQ 948
+ + + + +EE QA+ ++ + + + Q
Sbjct: 166 PGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQ 204
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 31.6 bits (70), Expect = 2.8
Identities = 57/454 (12%), Positives = 132/454 (29%), Gaps = 15/454 (3%)
Query: 861 VEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLK 920
VEK + + I E ++ L +Q + E+E + +L
Sbjct: 569 VEKHFINNAHRSVILLEGDENYAQEQENLEKQELKKRI---ENFNEQEKEQVIKNFEELS 625
Query: 921 EIQEEIQAQ--LEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTLV 978
+ + ++ L K+ L + + N+NEN N + ++ L
Sbjct: 626 KYKNAEESPEHLNKFPIISISDLNKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLK 685
Query: 979 NNLFSNMLINPMINLDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQ 1038
+N+ + + N +N + + V +LV L
Sbjct: 686 DNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMPTTGIVYLQFV 745
Query: 1039 NDKQLKQLENYETPMSSAMVEAVESNQTSTSKDSANIQLDHAETNTNEESPADQDETNST 1098
L L E + + N+T+ + L + + A + +
Sbjct: 746 FS--LDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHL 803
Query: 1099 TTLDKSHIQ-------KEIANNLPKVWRILIELLNTHQEQYENNDVNENFESCYKNIKTN 1151
DK + Q +++ I +E + + ++ T
Sbjct: 804 NVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTF 863
Query: 1152 TGKTHQV-ISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHSEQRLNTVTTEL 1210
+ K + + + + + KH + KL+ E E L + ++
Sbjct: 864 SEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTLENILVRIRNKI 923
Query: 1211 KKTWNVVNKLKLQHKQLYTHEKILKYELKHKRNIINDLKIDLEYVREKWDLVKEKNEQNE 1270
N++ + + L LK+ + + + ++ K + E
Sbjct: 924 FNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEE 983
Query: 1271 LDYKVLRKEFALRRLQYDGGRSTSESGISTDTED 1304
+ K L E +++ + + +S
Sbjct: 984 IKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK 1017
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 31.3 bits (70), Expect = 3.0
Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 26/262 (9%)
Query: 1085 NEESPADQDETNSTTTLDKSHIQKEIANNLPKVWRILIELLNTHQEQYEN-----NDVNE 1139
NE+ + +T +L HI + + + + L +Y N V +
Sbjct: 317 NEKEEGETADTVGCCSLRVEHINLHPELDGQEY-VVEFDFLGKDSIRYYNKVPVEKRVFK 375
Query: 1140 NFESCYKNIKTNTGKTHQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLEIRLNHS 1199
N + +N + ++ + KHL LT ++ + + L+ +L
Sbjct: 376 NLQLFMENKQPEDDLFDRLNTGILN----KHLQDLMEGLTAKVFRTYNASITLQQQLK-E 430
Query: 1200 EQRLNTVTTELKKTWNVVNKL---KLQHKQLYTHEK-----ILKYELKHKRNIINDLKID 1251
+ ++N N+ H++ L+ ++ K+ + D + D
Sbjct: 431 LTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRD 490
Query: 1252 LEYVREKWDLVKEKNEQNELDYKVLRKEFALRRLQYDGGRSTSESGISTDTEDDNVEIVE 1311
L+ + ++K+ + ++ K + +L +TD E++ +
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLM-------KLEVQATDREENKQIALG 543
Query: 1312 TNDESEDDKSEVVETQSEHDVP 1333
T+ + D V + VP
Sbjct: 544 TSKLNYLDPRITVAWCKKWGVP 565
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 31.3 bits (70), Expect = 3.1
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 21/102 (20%)
Query: 25 SSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEH 84
+ SMV+F D LK E+ ++I E+ + Y R
Sbjct: 594 TCNSMVLF---DHMGCLK-----KYETVQDILKEF------FDLRLSYYGLRKEW----- 634
Query: 85 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEM 126
++ A++ L + + I E+IQ ++ +KK +++M
Sbjct: 635 --LVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQM 674
Score = 30.5 bits (68), Expect = 6.6
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 864 KLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQ 923
K E+ ++I E+ + Y R ++ A++ L + + I
Sbjct: 608 KKYETVQDILKEF------FDLRLSYYGLRKEW-------LVGMLGAESTKLNNQARFIL 654
Query: 924 EEIQAQLEKYKENKKQILEM 943
E+IQ ++ +KK +++M
Sbjct: 655 EKIQGKITIENRSKKDLIQM 674
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 31.1 bits (71), Expect = 3.4
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 708 VSAVSEESSGLRSVDAIRPVLNHDEMTRRNVEAESRADAVVQDRIDTRLKSSPGIN 763
+ ++ S RSV IR + D MT + V ++ T +K PGI+
Sbjct: 626 RDPLQKQPSCQRSV-VIRTFITSDFMTGIPATPGNEIPVEVVLKMVTEIKKIPGIS 680
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A
{Sphingomonas SP} PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A*
1y3q_A 1j1n_A* 1kwh_A
Length = 502
Score = 31.0 bits (70), Expect = 3.4
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 7/75 (9%)
Query: 51 SPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK--NALLEAKLKEIQEE 108
+ EE + Y+K + K Q + EK L ++
Sbjct: 427 TVEERE-IYDKYWPDVKTYMFEMGQSWVMGTKD----PEKTWNDYQQQLKNRGFYQVMIV 481
Query: 109 IQAQLEKYKENKKQI 123
+Q ++ +
Sbjct: 482 MQKAYDRQYGGAAKP 496
Score = 31.0 bits (70), Expect = 3.4
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 7/75 (9%)
Query: 868 SPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK--NALLEAKLKEIQEE 925
+ EE + Y+K + K Q + EK L ++
Sbjct: 427 TVEERE-IYDKYWPDVKTYMFEMGQSWVMGTKD----PEKTWNDYQQQLKNRGFYQVMIV 481
Query: 926 IQAQLEKYKENKKQI 940
+Q ++ +
Sbjct: 482 MQKAYDRQYGGAAKP 496
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.4 bits (71), Expect = 3.5
Identities = 36/235 (15%), Positives = 69/235 (29%), Gaps = 35/235 (14%)
Query: 12 FKNFILTIGSPLTSSTSMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRE 71
F L+ ++ FK K E + + P + KI+ + Y +R+
Sbjct: 798 FATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSA--YNDIRD 855
Query: 72 LYEQRAAAAELEHKTMI------EKELAKN-----ALLEAKLKEIQEEIQAQLEKYKENK 120
+ A + E T E +L K+ + + E + + + E +E K
Sbjct: 856 WQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVK 915
Query: 121 KQILEMEKNIQLKD---DEINNLNENLTSSLAENHILNSQMTLVNNLFSNMLINPMINLD 177
+ I N + D I N + A + + F
Sbjct: 916 RLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKAS----------IIDAFFTFAQREQQRE- 964
Query: 178 MLIKLIQDNYL-------LIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQ 225
LI++ L I + + + L + K+ + KQ
Sbjct: 965 -AEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQ 1018
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 31.2 bits (71), Expect = 3.6
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 76 RAAAAELEHKTMIE------KELAKNALLEA------KLKEIQEEIQA-QLEKYKENKKQ 122
A + ++L K ++ K EI + A LE+ NK +
Sbjct: 91 PATLGKFVGLGSSSGGSTLTQQLIKQQVVGDAPTLARKAAEI---VDALALER-AMNKDE 146
Query: 123 ILEM 126
IL
Sbjct: 147 ILTT 150
Score = 31.2 bits (71), Expect = 3.6
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 893 RAAAAELEHKTMIE------KELAKNALLEA------KLKEIQEEIQA-QLEKYKENKKQ 939
A + ++L K ++ K EI + A LE+ NK +
Sbjct: 91 PATLGKFVGLGSSSGGSTLTQQLIKQQVVGDAPTLARKAAEI---VDALALER-AMNKDE 146
Query: 940 ILEM 943
IL
Sbjct: 147 ILTT 150
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 31.1 bits (70), Expect = 3.7
Identities = 18/100 (18%), Positives = 41/100 (41%)
Query: 845 SVILPLVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTM 904
+ + ++ V + + E E KIE K+ Y ++ +E
Sbjct: 826 EWWNETIEAEEEFIRSVMEDIKEIIEVAKIENAKRAYIYTAEDWKWKVAEVVSEKRDFKS 885
Query: 905 IEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEME 944
+EL K++ + KE+ + +Q +++ + K+I E +
Sbjct: 886 SMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEK 925
Score = 29.9 bits (67), Expect = 8.6
Identities = 18/95 (18%), Positives = 41/95 (43%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL 92
+ + ++ V + + E E KIE K+ Y ++ +E +EL
Sbjct: 831 TIEAEEEFIRSVMEDIKEIIEVAKIENAKRAYIYTAEDWKWKVAEVVSEKRDFKSSMEEL 890
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEME 127
K++ + KE+ + +Q +++ + K+I E +
Sbjct: 891 MKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEK 925
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, leucine zipper, fusion protein; 1.9A
{Saccharomyces cerevisiae} SCOP: h.1.20.1
Length = 59
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKE--NKKQILEME 127
K L +K ++ E+ + + N K L++E
Sbjct: 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43
Score = 27.7 bits (62), Expect = 3.9
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 910 AKNALLEAKLKEIQEEIQAQLEKYKE--NKKQILEME 944
K L +K ++ E+ + + N K L++E
Sbjct: 7 DKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIE 43
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein;
1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Length = 76
Score = 28.4 bits (64), Expect = 4.1
Identities = 4/32 (12%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 1147 NIKTNTGKTHQV-ISVSQTFIRLKHLILEKNH 1177
++ N+ V + + ++LK ++ ++
Sbjct: 4 FVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 29.4 bits (67), Expect = 4.4
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 96 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL---NENLTSSLAE 150
+ + K +E+Q+ + + K +I EM + IQ EI+N+ NL +++A+
Sbjct: 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68
Score = 29.4 bits (67), Expect = 4.4
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 913 ALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNL---NENLTSSLAE 967
+ + K +E+Q+ + + K +I EM + IQ EI+N+ NL +++A+
Sbjct: 11 SWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68
>2olv_A Penicillin-binding protein 2; transpeptidase fold,
glycosyltransferase family 51, lysozyme transferase;
HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10
e.3.1.1 PDB: 2olu_A* 3dwk_A*
Length = 669
Score = 30.8 bits (70), Expect = 4.4
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 92 LAKNALLEA------KLKEIQEEIQAQLEKYKENKKQILEM 126
+ K+A L K +E + +LE+ + +K I ++
Sbjct: 95 VVKDAFLSQHKSIGRKAQEA--YLSYRLEQ-EYSKDDIFQV 132
Score = 30.8 bits (70), Expect = 4.4
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 9/41 (21%)
Query: 909 LAKNALLEA------KLKEIQEEIQAQLEKYKENKKQILEM 943
+ K+A L K +E + +LE+ + +K I ++
Sbjct: 95 VVKDAFLSQHKSIGRKAQEA--YLSYRLEQ-EYSKDDIFQV 132
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 28.7 bits (64), Expect = 4.4
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 60 EKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKN---ALLEAKLKEIQEEIQAQLEKY 116
+K+M K +E RA AE + K ++ L+ KLK ++E++ E
Sbjct: 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67
Query: 117 KENKKQILEMEKNIQLKDDEINNLNENL 144
KE ++++ + EK + E+ +LN +
Sbjct: 68 KEAQEKLEQAEKKATDAEAEVASLNRRI 95
Score = 28.7 bits (64), Expect = 4.4
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 877 EKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKN---ALLEAKLKEIQEEIQAQLEKY 933
+K+M K +E RA AE + K ++ L+ KLK ++E++ E
Sbjct: 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESV 67
Query: 934 KENKKQILEMEKNIQLKDDEINNLNENL 961
KE ++++ + EK + E+ +LN +
Sbjct: 68 KEAQEKLEQAEKKATDAEAEVASLNRRI 95
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.7 bits (69), Expect = 4.7
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 25/104 (24%)
Query: 25 SSTSMVVFKVSDLKTRLKDVEKKL--LESPEEIKIEYEKQMTNYKKLRELYEQRAAAAEL 82
S +MV F D K+ S EI E+ Y E Y++R
Sbjct: 551 SLMNMVAF----------DPHGKIKKYNSVNEILSEF------YYVRLEYYQKRKDH--- 591
Query: 83 EHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEM 126
M E+ + ++K I+ I+ +L + + I++
Sbjct: 592 ----MSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQE 631
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 4.8
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 1397 PQEDIVDTITTSRTDHIESHQEINSSRETKEIPGTSDANVNYSQQFLNNKITI-----KT 1451
E +++ + + I S E + ++FL I +
Sbjct: 125 SSEVKENSVDSDDKAKVPPLIRIVSGLELSDTK-------QKGKKFL----VIAYEPFEN 173
Query: 1452 IGGKIKV-VAEHISTEDKPEDKANLNEPSHCPFWYFWQEKGKEKY 1495
I I++ E + +E+ D N FW K Y
Sbjct: 174 IA--IELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYY 216
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 30.7 bits (68), Expect = 4.9
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 23/202 (11%)
Query: 420 EHISTEDKPEDKANLNEPSPCETSDEKDIVKGNVVDYEATKQTRTESPSEEQKSKQLIRQ 479
I + +E + +DE + + ++ + + E K
Sbjct: 29 NEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHKT---- 84
Query: 480 DRITEETDESRPFESAECSRTSQPEVENHISNTDTIETAYSEMSEPIEEL------HTER 533
+ E D + E + ++ HI A +E S +E + E
Sbjct: 85 NENGETDDNIETVMTQEQFVKRRRDMLEHI------NLAMNESSLALEFVSLLLSSVKES 138
Query: 534 LSTETLQREPITSVPTATSNTTLPSEPSVSRTRTPEEILEARNARLKRLEDQCKNLFHKM 593
++ V ++ N+ + ++ E + + +L+ L ++ K+L
Sbjct: 139 TGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKEYIELDILNKGWKLQSL-NESKDLL--- 194
Query: 594 SLTSQRSDTLSERLEELHDYYG 615
+ LS L+ HDY+
Sbjct: 195 ---RASFNKLSSILQNEHDYWN 213
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 30.5 bits (69), Expect = 5.9
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 28 SMVVFKVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTM 87
+V VEK+ L + EE Y + ++ L A + + +
Sbjct: 131 KYIVLDPKGAILNGVPVEKRQLLTDEE----YRELRYGKQETYPLPPGVDALVKDGEEVV 186
Query: 88 IEKELAKNALLEAKLKEIQEEIQAQLEKYKENKK-----QILEMEKNIQLKDDEI 137
+ELA + + + +Y + ++ + + K EI
Sbjct: 187 KGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEI 241
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure,
northeast structural genomics consortium, protein
structure initiative, NESG; NMR {Homo sapiens}
Length = 88
Score = 27.7 bits (62), Expect = 9.3
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 1148 IKTNTGKTHQV-ISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNHLE 1193
++ N G++ + ++QT LK + + + L L LE
Sbjct: 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE 55
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 29.8 bits (66), Expect = 9.9
Identities = 20/117 (17%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 21 SPLTSSTSMVVFKVSDLKTRLKDVE---KKLLESPEEIKIEYEKQMTNYKKLRELYEQRA 77
++ + + +L+ +D E KKL ++ E I+Y++ + + +L +
Sbjct: 8 DAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNP 67
Query: 78 AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKD 134
+ +K+++ L+ + + +Q+ EK+++ Q+L ++ I L D
Sbjct: 68 QERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKT-LQLLRKQQTIILDD 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.126 0.340
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,758,880
Number of extensions: 1363385
Number of successful extensions: 3983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3776
Number of HSP's successfully gapped: 425
Length of query: 1642
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1535
Effective length of database: 3,714,246
Effective search space: 5701367610
Effective search space used: 5701367610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.2 bits)