RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16785
(1642 letters)
>d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 275
Score = 32.9 bits (74), Expect = 0.25
Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 1103 KSHIQKEIANNLPKVWRILIE--------LLNTHQEQYENNDVNENFESCYKNIKTNTGK 1154
K + I +PK + E + + ND N +CY+ IK N +
Sbjct: 12 KRQLLPVIRELIPKTYNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQE 71
Query: 1155 THQVISVSQTFIRLKHLILEKNHLTNQLAKLKTLNNH 1191
+++ V Q + ++ + ++ ++ + +
Sbjct: 72 LIEILKVHQEYNSKEYYLDLRSADRDERIDMMSEVQR 108
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 32.8 bits (74), Expect = 0.34
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 85 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKN 129
+T+ E+ K+ +L+ KL + E +A L+ ++ ++ ++ EMEK
Sbjct: 6 ETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKE 50
Score = 32.8 bits (74), Expect = 0.34
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 902 KTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKN 946
+T+ E+ K+ +L+ KL + E +A L+ ++ ++ ++ EMEK
Sbjct: 6 ETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKE 50
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2
{Sphingomonas sp. [TaxId: 28214]}
Length = 492
Score = 32.6 bits (73), Expect = 0.43
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 58 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK--NALLEAKLKEIQEEIQAQLEK 115
Y+K + + Q + ++K + L L ++ + +Q ++
Sbjct: 433 IYDKYWADVRTYMYEMGQAWVMGTKD----VDKTWDEYQRQLKLRGLYQVLQMMQQAYDR 488
Query: 116 YKEN 119
+N
Sbjct: 489 QYKN 492
Score = 32.6 bits (73), Expect = 0.43
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 875 EYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAK--NALLEAKLKEIQEEIQAQLEK 932
Y+K + + Q + ++K + L L ++ + +Q ++
Sbjct: 433 IYDKYWADVRTYMYEMGQAWVMGTKD----VDKTWDEYQRQLKLRGLYQVLQMMQQAYDR 488
Query: 933 YKEN 936
+N
Sbjct: 489 QYKN 492
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 32.3 bits (72), Expect = 0.49
Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 60 EKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKEN 119
K + + +AA ++E++ + +A ++E++++ A +E++ +
Sbjct: 300 HKFSSGSFTEGRIA-AKAAVRF-----ILEQKPNPE-IDDAVVEELKKKAYAPMERFMQY 352
Query: 120 K 120
K
Sbjct: 353 K 353
Score = 32.3 bits (72), Expect = 0.49
Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 877 EKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKYKEN 936
K + + +AA ++E++ + +A ++E++++ A +E++ +
Sbjct: 300 HKFSSGSFTEGRIA-AKAAVRF-----ILEQKPNPE-IDDAVVEELKKKAYAPMERFMQY 352
Query: 937 K 937
K
Sbjct: 353 K 353
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.9 bits (67), Expect = 1.3
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 41 LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEA 100
L++++KKL + E K + + + K L E E + + L
Sbjct: 44 LEEIQKKLEAAEERRKYQEAELL---KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 101 KLKEIQE----EIQAQLEKYKENKKQILEMEKNIQLKD 134
K++ +E + A LE+ +E K E+ KN +LK+
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 29.9 bits (67), Expect = 1.3
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 858 LKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNALLEA 917
L++++KKL + E K + + + K L E E + + L
Sbjct: 44 LEEIQKKLEAAEERRKYQEAELL---KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 918 KLKEIQE----EIQAQLEKYKENKKQILEMEKNIQLKD 951
K++ +E + A LE+ +E K E+ KN +LK+
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.4 bits (68), Expect = 1.9
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 22/126 (17%)
Query: 36 DLKTRLKDV------EKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 89
++T+ DV + S E +K+ ++ K E AA + K
Sbjct: 12 AMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHE-KHYANAAIFADSK---- 66
Query: 90 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLA 149
+ Q+ + L K L E+ + + +++ + + + S
Sbjct: 67 ----------NQKTICQQAVDTVLA-KKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTG 115
Query: 150 ENHILN 155
I
Sbjct: 116 SADIEE 121
Score = 30.4 bits (68), Expect = 1.9
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 22/126 (17%)
Query: 853 DLKTRLKDV------EKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIE 906
++T+ DV + S E +K+ ++ K E AA + K
Sbjct: 12 AMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHE-KHYANAAIFADSK---- 66
Query: 907 KELAKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLA 966
+ Q+ + L K L E+ + + +++ + + + S
Sbjct: 67 ----------NQKTICQQAVDTVLA-KKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTG 115
Query: 967 ENHILN 972
I
Sbjct: 116 SADIEE 121
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 30.1 bits (67), Expect = 2.2
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 37 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNA 96
+K + K++EK LL P+ + + Y K+ E+ E + E +
Sbjct: 1 MKEKKKEIEK-LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQ-------EFIELL 52
Query: 97 LLEAKLKEIQEEIQAQLEKYKENKKQILEME 127
E + + E+ + +L++ + +L E
Sbjct: 53 REEGENELEIEKYEKELDQLYQELLFLLSPE 83
Score = 30.1 bits (67), Expect = 2.2
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 854 LKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKELAKNA 913
+K + K++EK LL P+ + + Y K+ E+ E + E +
Sbjct: 1 MKEKKKEIEK-LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQ-------EFIELL 52
Query: 914 LLEAKLKEIQEEIQAQLEKYKENKKQILEME 944
E + + E+ + +L++ + +L E
Sbjct: 53 REEGENELEIEKYEKELDQLYQELLFLLSPE 83
>d2vnga1 b.18.1.33 (A:39-209) Uncharacterized protein CPE0329
{Clostridium perfringens [TaxId: 1502]}
Length = 171
Score = 29.2 bits (65), Expect = 2.9
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 1532 FQGGEVSVDETSNLQKSEAQIPIFDKGIGTHYIKENMVSYQL 1573
F G + +L+ + I F+KG+GT + ++Y +
Sbjct: 31 FTPGNNNQSTKISLKMEDGSISEFEKGLGTIAGSPSTITYDI 72
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId:
10665]}
Length = 169
Score = 28.8 bits (64), Expect = 3.7
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 176 LDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYET 234
+I ++ I+ I+ +E +D +++LV + L I +D QL Y
Sbjct: 97 SHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPN 155
Score = 28.8 bits (64), Expect = 3.7
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 993 LDMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLAIQNDKQLKQLENYET 1051
+I ++ I+ I+ +E +D +++LV + L I +D QL Y
Sbjct: 97 SHKVIDELKAYMPYIVMDIDKYEADDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPN 155
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 154
Score = 28.4 bits (63), Expect = 4.0
Identities = 2/30 (6%), Positives = 8/30 (26%)
Query: 107 EEIQAQLEKYKENKKQILEMEKNIQLKDDE 136
+++ + ++ K D
Sbjct: 122 DKLIEDIHTDIRVALNSMDRPSYSSYKKDP 151
Score = 28.4 bits (63), Expect = 4.0
Identities = 2/30 (6%), Positives = 8/30 (26%)
Query: 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDE 953
+++ + ++ K D
Sbjct: 122 DKLIEDIHTDIRVALNSMDRPSYSSYKKDP 151
>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 147
Score = 28.1 bits (62), Expect = 4.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 107 EEIQAQLEKYKENKKQILEMEKNIQLKDDE 136
E + + ++ E K+ LE+ + +++K+D
Sbjct: 112 ESLISAIQGDIEEAKKRLELPEYLKIKEDN 141
Score = 28.1 bits (62), Expect = 4.9
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 924 EEIQAQLEKYKENKKQILEMEKNIQLKDDE 953
E + + ++ E K+ LE+ + +++K+D
Sbjct: 112 ESLISAIQGDIEEAKKRLELPEYLKIKEDN 141
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 28.4 bits (63), Expect = 8.1
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 21/210 (10%)
Query: 33 KVSDLKTRLKDVEKKLLESPEEIKIEYEKQMTNYKKLRELYEQRAAAAELEHKTMIEKEL 92
K+ + L+ K+ I E+ +L L+ E T +
Sbjct: 188 KLREFAETLRTALKERSADDSIIVTLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVD- 246
Query: 93 AKNALLEAKLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENH 152
K K+I LE + K + L +D + + + N
Sbjct: 247 --------KDKKIHTIKSTPLEFASKYAKLDPST--PVSLINDPRHPYGKLIKIDRLGN- 295
Query: 153 ILNSQMTLVNNLFSNMLINPMINL-DMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEK 211
+L + N+ L +++K +Q+N + ++ ++
Sbjct: 296 VLGGDAVIYLNV-------DNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELW 348
Query: 212 KIDQETLAIQNDKQLKQLENYETPMSSAMV 241
+ K ++ +E+ M+ AM+
Sbjct: 349 NYPAIGYNLPQQKA-SRIRYHESLMTHAML 377
Score = 28.4 bits (63), Expect = 8.2
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 12/142 (8%)
Query: 918 KLKEIQEEIQAQLEKYKENKKQILEMEKNIQLKDDEINNLNENLTSSLAENHILNSQMTL 977
K K+I LE + K + L +D + + + N +L +
Sbjct: 247 KDKKIHTIKSTPLEFASKYAKLDPST--PVSLINDPRHPYGKLIKIDRLGN-VLGGDAVI 303
Query: 978 VNNLFSNMLINPMINL-DMLIKLIQDNYLLIIDLINNHEINDTVSLLVDLEKKIDQETLA 1036
N+ L +++K +Q+N + ++ ++
Sbjct: 304 YLNV-------DNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYN 356
Query: 1037 IQNDKQLKQLENYETPMSSAMV 1058
+ K ++ +E+ M+ AM+
Sbjct: 357 LPQQKA-SRIRYHESLMTHAML 377
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
{Clostridium perfringens [TaxId: 1502]}
Length = 426
Score = 28.6 bits (64), Expect = 8.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 78 AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKY 116
A L + + I +++ K+ L+ K ++EEI +EK+
Sbjct: 234 AVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKH 272
Score = 28.6 bits (64), Expect = 8.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 895 AAAELEHKTMIEKELAKNALLEAKLKEIQEEIQAQLEKY 933
A L + + I +++ K+ L+ K ++EEI +EK+
Sbjct: 234 AVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKH 272
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.126 0.340
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,460,251
Number of extensions: 256039
Number of successful extensions: 993
Number of sequences better than 10.0: 1
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 139
Length of query: 1642
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1544
Effective length of database: 1,062,056
Effective search space: 1639814464
Effective search space used: 1639814464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.8 bits)