BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16786
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1
SV=2
Length = 1083
Score = 253 bits (646), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 118/148 (79%), Positives = 132/148 (89%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
+K++TYRSSN +E G+ PS NLN FRLIKEVQK+F++REAEE+EKEDLVKQD L S
Sbjct: 601 VKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKEDLVKQDTLILS 660
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
++KGNPKLKDLY+RPNIV KRMTGSLEAH NGFRY SVRGDKVDILYNNIK AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRGDKVDILYNNIKSAFFQPCDG 720
Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++ILLHFHLK AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKYAIMFGKKKHVDVQFYT 748
>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2
Length = 1035
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 129/148 (87%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
+K++TYR+SN + PG PS PS NL FR+IKEVQK++++REAEEKEKE +VKQD L +
Sbjct: 597 VKEITYRASNVKTPGDPSVPSLNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 656
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
++ NPKLKDLY+RPNI KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 657 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 716
Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct: 717 EMIIVLHFHLKNAIMFGKKRHTDVQFYT 744
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 1 TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
TYR+SN + PG PS PS NL FR+IKEVQK++++REAEEKEKE +VKQD L + ++
Sbjct: 601 TYRASNVKTPGDPSVPSLNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRS 660
Query: 61 NPKLKDLTYR 70
NPKLKDL R
Sbjct: 661 NPKLKDLYIR 670
>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2
Length = 1047
Score = 240 bits (613), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 129/148 (87%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
+K++TYR+SN + PG+ + P+ NL FR+IKEVQK++++REAEEKEKE +VKQD L +
Sbjct: 595 VKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 654
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
++ NPKLKDLY+RPNI KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 655 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 714
Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++I+LHFHLKNA+MFGKK+H DVQFYT
Sbjct: 715 EMIIVLHFHLKNAVMFGKKRHTDVQFYT 742
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 1 TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
TYR+SN + PG+ + P+ NL FR+IKEVQK++++REAEEKEKE +VKQD L + ++
Sbjct: 599 TYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRS 658
Query: 61 NPKLKDLTYR 70
NPKLKDL R
Sbjct: 659 NPKLKDLYIR 668
>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1
Length = 1047
Score = 240 bits (612), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 106/148 (71%), Positives = 129/148 (87%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
+K++TYR+SN + PG+ + P+ NL FR+IKEVQK++++REAEEKEKE +VKQD L +
Sbjct: 595 VKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 654
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
++ NPKLKDLY+RPNI KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 655 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 714
Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct: 715 EMIIVLHFHLKNAIMFGKKRHTDVQFYT 742
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 54/70 (77%)
Query: 1 TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
TYR+SN + PG+ + P+ NL FR+IKEVQK++++REAEEKEKE +VKQD L + ++
Sbjct: 599 TYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRS 658
Query: 61 NPKLKDLTYR 70
NPKLKDL R
Sbjct: 659 NPKLKDLYIR 668
>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16
PE=3 SV=1
Length = 1034
Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/149 (68%), Positives = 129/149 (86%), Gaps = 1/149 (0%)
Query: 64 LKDLTYRSSNQREPGQPSTP-STNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
+K+LT+R+SN +E +TP S+NL+T FR IKE+QK+FR+ EAEE+EK+ VKQDKL
Sbjct: 593 MKELTFRASNIKEHHSDATPPSSNLSTAFRQIKEMQKRFRTEEAEEREKDGAVKQDKLIL 652
Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCD 182
S++K NPKLKDL +RPNI+ KR+TGSLEAH NGFRYTS+RGD++D+LYNNIKHAFFQPCD
Sbjct: 653 SQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCD 712
Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++ILLHFHLKN +M+GKKK+ DVQFYT
Sbjct: 713 NEMIILLHFHLKNPVMWGKKKYKDVQFYT 741
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 TYRSSNQREPGQPSTP-STNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSK 59
T+R+SN +E +TP S+NL+T FR IKE+QK+FR+ EAEE+EK+ VKQDKL S++K
Sbjct: 597 TFRASNIKEHHSDATPPSSNLSTAFRQIKEMQKRFRTEEAEEREKDGAVKQDKLILSQNK 656
Query: 60 GNPKLKDLTYR 70
NPKLKDL R
Sbjct: 657 LNPKLKDLLIR 667
>sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16
PE=3 SV=1
Length = 1030
Score = 206 bits (525), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 102/149 (68%), Positives = 129/149 (86%), Gaps = 1/149 (0%)
Query: 64 LKDLTYRSSNQREPGQPST-PSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
+K+LT+R+SN ++ ST PS NL+T FRLIKE+QK+F++ EAEE+EKE VKQDKL
Sbjct: 594 MKELTFRASNIKDHHSDSTAPSHNLSTAFRLIKEMQKRFKTEEAEEREKEGAVKQDKLIL 653
Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCD 182
S++K NPKLKDL +RPNI+ KR+TGSLEAH NGFRYTS+RGD++D+LYNNIKHAFFQPCD
Sbjct: 654 SQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCD 713
Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFYT 211
E++ILLHFHLKN +++GKKK+ DVQFYT
Sbjct: 714 NEMIILLHFHLKNPVLWGKKKYKDVQFYT 742
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 TYRSSNQREPGQPST-PSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSK 59
T+R+SN ++ ST PS NL+T FRLIKE+QK+F++ EAEE+EKE VKQDKL S++K
Sbjct: 598 TFRASNIKDHHSDSTAPSHNLSTAFRLIKEMQKRFKTEEAEEREKEGAVKQDKLILSQNK 657
Query: 60 GNPKLKDLTYR 70
NPKLKDL R
Sbjct: 658 LNPKLKDLLIR 668
>sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16
PE=2 SV=2
Length = 1056
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 14/159 (8%)
Query: 57 RSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVK 116
+S+G LK++T+RS + R + V + IK ++++ SRE+E E+ LV
Sbjct: 600 KSQGAIYLKEITFRSKDPRHSSE----------VVQQIKTLRRQVASRESERAERATLVT 649
Query: 117 QDKLEESRSKGNP-KLKDLYMRPNIVMK--RMTGSLEAHVNGFRYTSVRGD-KVDILYNN 172
Q+KL+ + ++ P +L D+++RP + ++TG+LE+HVNGFRY++ R D +VDI+Y N
Sbjct: 650 QEKLQLTSNRNKPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGN 709
Query: 173 IKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
+KHAFFQP + E++ LLHFHL N IM G KK DVQFY
Sbjct: 710 VKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYV 748
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 23 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNP-KLKDLTYRSS 72
V + IK ++++ SRE+E E+ LV Q+KL+ + ++ P +L D+ R +
Sbjct: 623 VVQQIKTLRRQVASRESERAERATLVTQEKLQLTSNRNKPVRLSDVWIRPA 673
>sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt16 PE=1 SV=1
Length = 1019
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 12/149 (8%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
++ T+RSSN ++ ++ VF+ I++++K RE E KE D+++QDKL E
Sbjct: 606 IRSFTFRSSN----------NSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEI 655
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDK-VDILYNNIKHAFFQPC 181
++K + D+Y+RP I KR+ G +E H NG RY S +R D +D+L++N+KH FFQPC
Sbjct: 656 KNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPC 715
Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
+GEL++L+H HLK IM GK+K DVQFY
Sbjct: 716 EGELIVLIHVHLKAPIMVGKRKTQDVQFY 744
Score = 38.5 bits (88), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 1 TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
T+RSSN ++ ++ VF+ I++++K RE E KE D+++QDKL E ++K
Sbjct: 610 TFRSSN----------NSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKR 659
Query: 61 NPKLKDLTYRSS--NQREPG 78
+ D+ R + +R PG
Sbjct: 660 PAHINDVYVRPAIDGKRLPG 679
>sp|Q4WJ02|SPT16_ASPFU FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16
PE=3 SV=1
Length = 1019
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 13/149 (8%)
Query: 64 LKDLTYRS-SNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
L++LT RS N+R L V + I E++K RE E+KE ED+V+QDKL E
Sbjct: 607 LRNLTLRSKDNER-----------LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIE 655
Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDKVDILYNNIKHAFFQPC 181
R++ KL D+Y+RP + KR+ G +E H NG RY S R + VD+L++N+KH FFQPC
Sbjct: 656 IRNRRPVKLPDVYLRPPLDGKRVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPC 715
Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
EL++L+H HLK IM GK+K DVQFY
Sbjct: 716 AHELIVLIHVHLKTPIMIGKRKTRDVQFY 744
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 20 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRS--SNQREP 77
L V + I E++K RE E+KE ED+V+QDKL E R++ KL D+ R +R P
Sbjct: 620 LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIEIRNRRPVKLPDVYLRPPLDGKRVP 679
Query: 78 GQ 79
G+
Sbjct: 680 GE 681
>sp|Q2UBF1|SPT16_ASPOR FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=spt16 PE=3 SV=1
Length = 1042
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 13/149 (8%)
Query: 64 LKDLTYRS-SNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
L++LT RS N+R L V + I E++K RE E+KE ED+V+QDKL E
Sbjct: 629 LRNLTLRSKDNER-----------LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLVE 677
Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDKVDILYNNIKHAFFQPC 181
R++ +L D+Y+RP + KR+ G +E H NG RY S R + VD+L++N+KH FFQPC
Sbjct: 678 IRNRRPVRLPDVYLRPPLDGKRVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPC 737
Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
EL++L+H HLK IM GK+K DVQFY
Sbjct: 738 AHELIVLIHVHLKTPIMIGKRKTRDVQFY 766
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 20 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRS--SNQREP 77
L V + I E++K RE E+KE ED+V+QDKL E R++ +L D+ R +R P
Sbjct: 642 LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLVEIRNRRPVRLPDVYLRPPLDGKRVP 701
Query: 78 GQ 79
G+
Sbjct: 702 GE 703
>sp|Q5B2X8|SPT16_EMENI FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3
SV=2
Length = 1019
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 94/148 (63%), Gaps = 11/148 (7%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
L++LT RS + Q V + I E++K RE E+KE ED+V+QDKL E
Sbjct: 608 LRNLTLRSKDNDRFAQ----------VAQDITELRKNALRREQEKKEMEDVVEQDKLVEI 657
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDKVDILYNNIKHAFFQPCD 182
R++ KL D+Y+RP + KR+ G +E H NG RY S R + VD+L++N+KH FFQPC
Sbjct: 658 RNRRPVKLPDVYLRPPLDGKRVPGEVEIHQNGLRYVSPFRNEHVDVLFSNVKHLFFQPCA 717
Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFY 210
EL++L+H HLK IM GK+K D+QFY
Sbjct: 718 HELIVLIHVHLKTPIMIGKRKTRDIQFY 745
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 27 IKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRS--SNQREPGQ 79
I E++K RE E+KE ED+V+QDKL E R++ KL D+ R +R PG+
Sbjct: 628 ITELRKNALRREQEKKEMEDVVEQDKLVEIRNRRPVKLPDVYLRPPLDGKRVPGE 682
>sp|Q8H6B1|SPT16_MAIZE FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1
Length = 1055
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 14/158 (8%)
Query: 58 SKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
S+G LK++T+RS + R + V + IK ++++ SRE+E E+ LV Q
Sbjct: 601 SQGAIYLKEITFRSKDPRHSSE----------VVQQIKTLRRQVASRESERAERATLVTQ 650
Query: 118 DKLEESRSKGNP-KLKDLYMRPNIVMK--RMTGSLEAHVNGFRYTSVRGD-KVDILYNNI 173
+KL+ ++ +L D+++RP + ++TG+LEAH NGFRY++ R D +VDI++ NI
Sbjct: 651 EKLQIGSNRMKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNI 710
Query: 174 KHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
KHAFFQP + E++ LLHFHL N IM G KK DVQFY
Sbjct: 711 KHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYV 748
>sp|O82491|SPT16_ARATH FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1
SV=1
Length = 1074
Score = 124 bits (311), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 13/158 (8%)
Query: 57 RSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVK 116
+++G LK++++R+ + R + V + IK ++++ +RE+E E+ LV
Sbjct: 615 KNQGAIYLKEVSFRTKDSRHSSE----------VTQQIKTLRRQVMARESERAERATLVT 664
Query: 117 QDKLEESRSKGNP-KLKDLYMRPNIV-MKRMTGSLEAHVNGFRYTSVRGD-KVDILYNNI 173
Q+KL+ + +K P +L +L++RP K++ G+LEAH NGFRY++ R D +VD+L+ NI
Sbjct: 665 QEKLQLAGNKFKPLRLSELWIRPPFSGRKKIPGTLEAHANGFRYSTTRPDERVDVLFANI 724
Query: 174 KHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
KHAFFQP + E++ LLHFHL N IM G KK DVQFY
Sbjct: 725 KHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYV 762
>sp|Q4P2U5|SPT16_USTMA FACT complex subunit SPT16 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SPT16 PE=3 SV=1
Length = 1032
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 88/123 (71%), Gaps = 3/123 (2%)
Query: 90 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSL 149
+FR I E++K REAEEKE D+V+QDKL ++S+ L +++ RP + KR+ G L
Sbjct: 627 LFREITELRKSATKREAEEKELADVVEQDKLILTKSRAY-TLPEVFPRPAMEGKRVPGDL 685
Query: 150 EAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDV 207
H NG R++S +R D K+D+L++N+KH FFQPCD EL++++H HLK+ IM GK+K D+
Sbjct: 686 TIHQNGLRFSSPLRPDQKIDLLFSNMKHLFFQPCDKELIVIVHIHLKSPIMIGKRKAKDI 745
Query: 208 QFY 210
QFY
Sbjct: 746 QFY 748
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 23 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
+FR I E++K REAEEKE D+V+QDKL ++S+
Sbjct: 627 LFREITELRKSATKREAEEKELADVVEQDKLILTKSRA 664
>sp|Q6C931|SPT16_YARLI FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=SPT16 PE=3 SV=1
Length = 1003
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 12/149 (8%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
L+ +T+RS + ++N VF+ I++++K +EAE+KE ED+V QD L E
Sbjct: 605 LRSITFRSRHVE----------HMNDVFKQIQDLKKASTKKEAEKKEMEDVVAQDSLVEV 654
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPC 181
R++ KL +++RP KR+ G+LE H NG RY S +R D K+D+L++NIKH FFQP
Sbjct: 655 RARRPLKLDAVFVRPAPDGKRVAGTLEIHQNGLRYVSPIRSDHKIDVLFDNIKHLFFQPT 714
Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
+GEL++ +H HLKN I+ GKKK DVQFY
Sbjct: 715 EGELIVCIHAHLKNPILIGKKKTWDVQFY 743
>sp|Q756A7|SPT16_ASHGO FACT complex subunit SPT16 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPT16 PE=3 SV=2
Length = 1031
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 90 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSL 149
+F+ I E++K+ RE E K D+V+Q KL E+R+ +L +++RP+ KR+ G++
Sbjct: 635 IFKQITELKKESTKREQERKVLADVVEQAKLVENRTGRTKRLDQIFVRPSPDTKRVPGTV 694
Query: 150 EAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDV 207
H NG RY S +R D ++DIL++N+K+ FFQPC GEL++++H HLKN I+ GKKK DV
Sbjct: 695 FIHENGIRYQSPLRTDSRIDILFSNVKNLFFQPCKGELIVIIHIHLKNPILMGKKKIQDV 754
Query: 208 QFY 210
QFY
Sbjct: 755 QFY 757
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 23 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSS--NQREPG 78
+F+ I E++K+ RE E K D+V+Q KL E+R+ +L + R S +R PG
Sbjct: 635 IFKQITELKKESTKREQERKVLADVVEQAKLVENRTGRTKRLDQIFVRPSPDTKRVPG 692
>sp|Q6BXE5|SPT16_DEBHA FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SPT16 PE=3 SV=2
Length = 1033
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Query: 90 VFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSL 149
V++ I++++K RE E+K+ D+V Q L E + KL +++RP K++ G L
Sbjct: 643 VYKAIQDLKKDAVKREQEKKQMADVVSQANLVELKGSRVKKLDQVFIRPQPDTKKIGGVL 702
Query: 150 EAHVNGFRY-TSVRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDV 207
+ H NG RY +S+R D KVDIL++NIKH FFQ C EL++++H HLKN IM GKKK DV
Sbjct: 703 QIHENGLRYQSSIRMDQKVDILFSNIKHLFFQSCKDELIVIIHCHLKNPIMIGKKKTHDV 762
Query: 208 QFY 210
QFY
Sbjct: 763 QFY 765
>sp|Q4HYB8|SPT16_GIBZE FACT complex subunit SPT16 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT16 PE=3 SV=1
Length = 1034
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 13/150 (8%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
++ LT+RSS+ + +T +N+ ++V KK E E+K+ ED+V+QDKL E
Sbjct: 614 VRSLTFRSSDGERYNEIATQISNMK------RDVVKK----EQEKKDMEDVVEQDKLVEI 663
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRG--DKVDILYNNIKHAFFQPC 181
R++ L ++Y+RP + KR+ G +E H NG RY S +VD+L++N+KH FFQPC
Sbjct: 664 RNRRPAVLDNVYIRPAMEGKRVPGKVEIHQNGIRYISPLNAQHRVDVLFSNVKHLFFQPC 723
Query: 182 DGELVILLHFHLKNAIMFG-KKKHVDVQFY 210
EL++++H HLK+ I+ G KKK DVQFY
Sbjct: 724 QHELIVIIHIHLKDPIIVGNKKKTKDVQFY 753
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 1 TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
T+RSS+ + +T +N+ ++V KK E E+K+ ED+V+QDKL E R++
Sbjct: 618 TFRSSDGERYNEIATQISNMK------RDVVKK----EQEKKDMEDVVEQDKLVEIRNRR 667
Query: 61 NPKLKDLTYRSS--NQREPGQ 79
L ++ R + +R PG+
Sbjct: 668 PAVLDNVYIRPAMEGKRVPGK 688
>sp|Q54S43|SPT16_DICDI FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16
PE=3 SV=1
Length = 1072
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 91 FRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIV-MKRMTGSL 149
RLIKE++KKF +RE E++EK +L+ Q+KL R K P+L +++ RP + +R G L
Sbjct: 638 IRLIKELKKKFTTRETEDREKRNLITQEKLILLRGKF-PRLPEVHARPTLSGARRTIGIL 696
Query: 150 EAHVNGFRY--TSVRG-DKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVD 206
EAH NG R+ TS + +D+LY NIKHA +Q D E + ++HFHL +A+M GKKK D
Sbjct: 697 EAHENGIRFNPTSTKDRTPIDVLYKNIKHAIYQQADQESMAVIHFHLHDALMIGKKKTKD 756
Query: 207 VQFY 210
VQFY
Sbjct: 757 VQFY 760
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 24 FRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSS 72
RLIKE++KKF +RE E++EK +L+ Q+KL R K P+L ++ R +
Sbjct: 638 IRLIKELKKKFTTRETEDREKRNLITQEKLILLRGKF-PRLPEVHARPT 685
>sp|Q5A1D5|SPT16_CANAL FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SPT16 PE=3 SV=1
Length = 1060
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 100/173 (57%), Gaps = 18/173 (10%)
Query: 46 DLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSRE 105
++ K+ +L S N L+ +T RS +++ + V++ I++++K RE
Sbjct: 624 NVTKKQELPYEDSPDNSFLRSITIRSRDRQR----------MVDVYKAIQDLKKDSVKRE 673
Query: 106 AEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS----- 160
E+K+ D++ Q L E + KL ++++RP K++ G L+ H NG RY S
Sbjct: 674 QEKKQMADVITQANLIELKGSRVKKLNNVFIRPTPDTKKIGGVLQIHENGLRYQSQPQSQ 733
Query: 161 --VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFY 210
+ D +VD+L++NIKH FFQPC EL++L+H HLKN IM GK+K DVQFY
Sbjct: 734 SNFKNDQRVDVLFSNIKHLFFQPCKDELIVLIHCHLKNPIMIGKRKTFDVQFY 786
>sp|Q6FWT4|SPT16_CANGA FACT complex subunit SPT16 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SPT16
PE=3 SV=1
Length = 1027
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 87 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMT 146
++ F+ I +++K+ RE E K D+V+QDKL E+++ +L +++RP+ KR+
Sbjct: 632 MSETFKQITDLKKESTKREQERKALADVVQQDKLIENKTGRTKRLDQIFVRPSPDTKRVP 691
Query: 147 GSLEAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKH 204
++ H NG RY S +R D ++DIL++NIK+ FQ C GEL++++H HLKN IM GKKK
Sbjct: 692 STVFIHENGIRYQSPLRTDSRIDILFSNIKNLIFQSCKGELIVIIHIHLKNPIMMGKKKI 751
Query: 205 VDVQFY 210
DVQFY
Sbjct: 752 QDVQFY 757
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 20 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQ 79
++ F+ I +++K+ RE E K D+V+QDKL E+++ +L + R S P
Sbjct: 632 MSETFKQITDLKKESTKREQERKALADVVQQDKLIENKTGRTKRLDQIFVRPS----PDT 687
Query: 80 PSTPST 85
PST
Sbjct: 688 KRVPST 693
>sp|P32558|SPT16_YEAST FACT complex subunit SPT16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPT16 PE=1 SV=1
Length = 1035
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 87 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMT 146
++ F+ I +++K+ RE E K D+V+QDKL E+++ +L +++RPN KR+
Sbjct: 636 MSETFKQIADLKKEATKREQERKALADVVQQDKLIENKTGRTKRLDQIFVRPNPDTKRVP 695
Query: 147 GSLEAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKH 204
++ H NG R+ S +R D ++DIL++NIK+ FQ C GEL++++H HLKN I+ GKKK
Sbjct: 696 STVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIVVIHIHLKNPILMGKKKI 755
Query: 205 VDVQFY 210
DVQFY
Sbjct: 756 QDVQFY 761
>sp|P0CQ23|SPT16_CRYNB FACT complex subunit SPT16 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SPT16 PE=3
SV=1
Length = 1035
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 11/148 (7%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
++ +++RS +QR ++ V+ I ++K RE E KE D+++Q+KL E
Sbjct: 614 IRSVSFRSQDQR----------HMLKVYEAITALKKAAVKRETERKELADVIEQEKLIEV 663
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRY-TSVRGDKVDILYNNIKHAFFQPCD 182
+ + LK+++ RP K+ G++E H NG R+ K+DIL++NIKH FFQP +
Sbjct: 664 KGRHPYVLKNVFPRPGPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSE 723
Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFY 210
EL++++H HLK IM GKKK DVQFY
Sbjct: 724 KELIVIIHVHLKAPIMLGKKKTSDVQFY 751
>sp|P0CQ22|SPT16_CRYNJ FACT complex subunit SPT16 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT16 PE=3 SV=1
Length = 1035
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 11/148 (7%)
Query: 64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
++ +++RS +QR ++ V+ I ++K RE E KE D+++Q+KL E
Sbjct: 614 IRSVSFRSQDQR----------HMLKVYEAITALKKAAVKRETERKELADVIEQEKLIEV 663
Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRY-TSVRGDKVDILYNNIKHAFFQPCD 182
+ + LK+++ RP K+ G++E H NG R+ K+DIL++NIKH FFQP +
Sbjct: 664 KGRHPYVLKNVFPRPGPEGKKTDGNVEIHQNGIRFRPDGPASKIDILFSNIKHLFFQPSE 723
Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFY 210
EL++++H HLK IM GKKK DVQFY
Sbjct: 724 KELIVIIHVHLKAPIMLGKKKTSDVQFY 751
>sp|Q8X0X6|SPT16_NEUCR FACT complex subunit spt-16 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=spt-16 PE=3 SV=1
Length = 1032
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 104 REAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS--V 161
+E E+K+ ED+V+QDKL E R++ L ++++RP + KR+ G +E H NG RY S
Sbjct: 643 KEQEKKDMEDVVEQDKLVEIRNRRPAVLDNVFIRPAMEGKRVPGKVEIHQNGIRYQSPLS 702
Query: 162 RGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFG-KKKHVDVQFY 210
+VDIL++N++H FFQPC EL++++H HLK+ I+ G KKK DVQFY
Sbjct: 703 TTQRVDILFSNVRHLFFQPCQHELIVIIHIHLKDPIIIGNKKKTKDVQFY 752
>sp|Q00976|SPT16_KLULA FACT complex subunit SPT16 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SPT16 PE=3 SV=2
Length = 1033
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 87 LNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMT 146
++ VF+ I +++K+ RE E K D+V Q KL E+++ +L +++RP+ KR+
Sbjct: 633 MSDVFKQITDLKKESTKREQERKALADVVVQAKLVENKTGRTKRLDQIFVRPSPDTKRVP 692
Query: 147 GSLEAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKH 204
G++ H NG RY S +R D ++DIL++NIK+ FFQ GEL++++H HLKN I+ GKKK
Sbjct: 693 GTVFIHENGIRYQSPLRTDSRIDILFSNIKNLFFQSSKGELIVIIHVHLKNPILMGKKKI 752
Query: 205 VDVQFY 210
D+QFY
Sbjct: 753 QDIQFY 758
>sp|Q73T66|CLPB_MYCPA Chaperone protein ClpB OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=clpB PE=3 SV=1
Length = 848
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 27 IKEVQKKFRSREAEE---KEKEDLVKQDKLEESRSK---GNPKLKDLTYRSSNQREPGQP 80
I EV++ R E EE ++ED +++LE+ RS+ KL +LT R N++
Sbjct: 413 IDEVERLVRRLEIEEMALAKEEDEASKERLEKLRSELADQKEKLAELTTRWQNEK----- 467
Query: 81 STPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLE-----ESRSKGNPKLKDLY 135
N V R +KE + R + DL K +L E K L
Sbjct: 468 -----NAIDVVRELKEQLETLRGESDRAERDGDLAKAAELRYGRIPEVEKKLEAALPQAE 522
Query: 136 MRPNIVMKRMTG 147
R N+++K G
Sbjct: 523 ARENVMLKEEVG 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,539,846
Number of Sequences: 539616
Number of extensions: 3379583
Number of successful extensions: 20690
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 626
Number of HSP's that attempted gapping in prelim test: 17929
Number of HSP's gapped (non-prelim): 2504
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)