Query psy16786
Match_columns 211
No_of_seqs 201 out of 276
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:03:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 81.2 1.8 6.1E-05 37.9 4.9 74 125-203 22-95 (261)
2 3es1_A Cupin 2, conserved barr 40.1 63 0.0022 26.0 6.2 57 145-203 106-163 (172)
3 1pfj_A TFIIH basal transcripti 34.5 48 0.0016 25.4 4.3 56 141-196 16-82 (108)
4 1m46_B IQ4, IQ4 motif from MYO 26.6 96 0.0033 17.9 3.6 15 90-104 2-16 (26)
5 1o4t_A Putative oxalate decarb 24.1 1.5E+02 0.005 21.6 5.4 47 145-192 85-132 (133)
6 4f21_A Carboxylesterase/phosph 16.9 72 0.0025 25.9 2.5 37 151-190 6-44 (246)
7 1vsr_A Protein (VSR endonuclea 15.2 39 0.0013 26.6 0.4 28 151-178 12-42 (136)
8 3u12_A USP37 protein; structur 15.1 1E+02 0.0035 24.7 2.8 63 143-207 37-108 (141)
9 2opk_A Hypothetical protein; p 14.0 2.6E+02 0.0088 19.8 4.6 48 145-193 60-109 (112)
10 3kgz_A Cupin 2 conserved barre 13.8 2.8E+02 0.0096 21.2 5.1 43 145-188 71-113 (156)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=81.25 E-value=1.8 Score=37.85 Aligned_cols=74 Identities=9% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCCCCcccccccccCCCCCcccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceEEEEEeeeccceeecccc
Q psy16786 125 SKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKK 203 (211)
Q Consensus 125 ~~~~~~L~dv~iRP~~~~kr~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKk 203 (211)
+.....+.||.+=-+ |--=++|++.+.+|.... .-...|.|+||+++|+=|--.+.-+.+=+.|..||.-|..+
T Consensus 22 gd~i~~~~dv~~ltP----RGrydi~~~~~~lrl~gk-t~dyki~~~~I~r~f~LP~pd~~~~~~vi~ld~PirqGqt~ 95 (261)
T 2gcl_A 22 GDAIVSFQDVFFTTP----RGRYDIDIYKNSIRLRGK-TYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTT 95 (261)
T ss_dssp TTSSEEEEEEEEEET----TEEEEEEECSSEEEEEES-SCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEE
T ss_pred CceEEEEcCceEEcC----CCceEEEEecCcEEEeCC-cccceechhhEEEEEEccCCCcCceEEEEecCCCccCCCcc
Confidence 333345667654332 222368889988887642 22377999999999998875553333334478999988764
No 2
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=40.09 E-value=63 Score=25.98 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=48.0
Q ss_pred ccceEEEeec-ceeeeccCCCeeeEeecccceecccCCCCceEEEEEeeeccceeecccc
Q psy16786 145 MTGSLEAHVN-GFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKK 203 (211)
Q Consensus 145 ~~G~LE~H~N-G~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKk 203 (211)
+.|.+|++.. |=.|.-..||-+ .=.+..|.|.=+.+.+..+|.=+---.||.+|-+.
T Consensus 106 LeGel~l~ld~ge~~~L~~GDsi--~~~g~~H~~~N~g~~~ar~l~V~~P~~p~~v~g~~ 163 (172)
T 3es1_A 106 LEGEIELELDDGAKRTVRQGGII--VQRGTNHLWRNTTDKPCRIAFILIEAPAYLHNGQP 163 (172)
T ss_dssp EESCEEEECGGGCEEEECTTCEE--EECSCCBEEECCSSSCEEEEEEEEECCCCEETTEE
T ss_pred EeCEEEEEECCCeEEEECCCCEE--EeCCCcEEEEeCCCCCEEEEEEEcCCCceeECCEE
Confidence 7899999998 877876568988 57899999999999888888878888899887654
No 3
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=34.47 E-value=48 Score=25.39 Aligned_cols=56 Identities=25% Similarity=0.439 Sum_probs=37.1
Q ss_pred CCCcccceEEEeecceeeeccCCC--eeeEeecccceecccCCCC---ceEEEEE------eeeccc
Q psy16786 141 VMKRMTGSLEAHVNGFRYTSVRGD--KVDILYNNIKHAFFQPCDG---ELVILLH------FHLKNA 196 (211)
Q Consensus 141 ~~kr~~G~LE~H~NG~Ry~s~r~~--~vDilf~NIKHafFQp~~~---E~ivliH------fhLk~p 196 (211)
.-|+..|+|.+-..-+-++...++ .|-+.|++|++..==|... -+-+++| ||+-||
T Consensus 16 ~yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~ 82 (108)
T 1pfj_A 16 RQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNE 82 (108)
T ss_dssp BCSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCS
T ss_pred eeecCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCc
Confidence 347888999999886666653334 3666799999976656543 3444444 555554
No 4
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=26.57 E-value=96 Score=17.90 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhH
Q psy16786 90 VFRLIKEVQKKFRSR 104 (211)
Q Consensus 90 ~~~~Ikel~K~~~~r 104 (211)
+.+.|..|||+++++
T Consensus 2 vlrtitnlqkkirke 16 (26)
T 1m46_B 2 VLRTITNLQKKIRKE 16 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578899999988754
No 5
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.14 E-value=1.5e+02 Score=21.59 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=32.6
Q ss_pred ccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceE-EEEEee
Q psy16786 145 MTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELV-ILLHFH 192 (211)
Q Consensus 145 ~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~i-vliHfh 192 (211)
..|.+++..+|=.|.-..||-+ ++-.|..|.|.-+.+.++. +.+.|.
T Consensus 85 l~G~~~~~i~~~~~~l~~Gd~i-~i~~~~~H~~~n~~~~~~~~l~v~~~ 132 (133)
T 1o4t_A 85 LLGEGVFHDNGKDVPIKAGDVC-FTDSGESHSIENTGNTDLEFLAVIIL 132 (133)
T ss_dssp EESEEEEEETTEEEEEETTEEE-EECTTCEEEEECCSSSCEEEEEEEEE
T ss_pred EeCEEEEEECCEEEEeCCCcEE-EECCCCcEEeEECCCCCEEEEEEEEe
Confidence 6788888888877765456555 5568999999988766543 334443
No 6
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=16.91 E-value=72 Score=25.94 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=13.3
Q ss_pred EeecceeeeccCCCeeeEeecccceecccCCCCc--eEEEEE
Q psy16786 151 AHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGE--LVILLH 190 (211)
Q Consensus 151 ~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E--~ivliH 190 (211)
-|++|+.+.+ +.+=+..+....-+++|...- .+|+||
T Consensus 6 ~~~~~~d~~~---~~~~~~~~~l~y~ii~P~~~~~~~VI~LH 44 (246)
T 4f21_A 6 HHSSGVDLGT---ENLYFQSNAMNYELMEPAKQARFCVIWLH 44 (246)
T ss_dssp --------------------CCCCEEEECCSSCCCEEEEEEE
T ss_pred cccccccccc---ceEEEecCCcCceEeCCCCcCCeEEEEEc
Confidence 3778887765 333344445556678887543 677777
No 7
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=15.19 E-value=39 Score=26.57 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=21.8
Q ss_pred Eeecceeeecc-C--CCeeeEeecccceecc
Q psy16786 151 AHVNGFRYTSV-R--GDKVDILYNNIKHAFF 178 (211)
Q Consensus 151 ~H~NG~Ry~s~-r--~~~vDilf~NIKHafF 178 (211)
+|..||||.-. + ...+||.|---|-++|
T Consensus 12 L~~~G~rfR~q~~~lpg~pD~v~~~~rlvIf 42 (136)
T 1vsr_A 12 LTGQGLAFRVQDASLPGRPDFVVDEYRCVIF 42 (136)
T ss_dssp HHHTTCCCEESCTTSTTCCSEEEGGGTEEEE
T ss_pred HHHCCCEEEEecCCCCCcccEEeccCCEEEE
Confidence 45679999843 2 3589999999998887
No 8
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=15.06 E-value=1e+02 Score=24.69 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=40.5
Q ss_pred CcccceEEEeecc------eeeeccCCC-eeeEeecccceecccCCCCceEEEEEeeeccc--eeecccccccc
Q psy16786 143 KRMTGSLEAHVNG------FRYTSVRGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNA--IMFGKKKHVDV 207 (211)
Q Consensus 143 kr~~G~LE~H~NG------~Ry~s~r~~-~vDilf~NIKHafFQp~~~E~ivliHfhLk~p--ImiGkKkt~DV 207 (211)
|-..|.+|+=+-- ++|.+ ++- ++==|-+|||-.-|+||....- -||..|++- ++|.|=...|+
T Consensus 37 K~KEa~iE~VE~kkkv~LVv~F~~-G~~~ktFQL~nNIksVvlr~~g~~qn-~LhLTlknn~fLfIdKLs~~Da 108 (141)
T 3u12_A 37 KWKEGSFEIVEKENKVSLVVHYNT-GGIPRIFQLSHNIKNVVLRPSGAKQS-RLMLTLQDNSFLSIDKVPSKDA 108 (141)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETT-CSCCEEEECTTTEEEEEEEECSTTEE-EEEEEETTCCEEEEEEEEHHHH
T ss_pred cchheeeeeeeccceEEEEEEEeC-CCccEEEEcccceeeEEEecCCCccc-eEEEEEecCcEEEEecCCHHHH
Confidence 4566777765432 45554 222 3444667999999999976654 567777764 67777666554
No 9
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=14.03 E-value=2.6e+02 Score=19.77 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=35.5
Q ss_pred ccceEEEeeccee--eeccCCCeeeEeecccceecccCCCCceEEEEEeee
Q psy16786 145 MTGSLEAHVNGFR--YTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHL 193 (211)
Q Consensus 145 ~~G~LE~H~NG~R--y~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhL 193 (211)
+.|.++++.+|=. |.-..||-+-|- .+..|.+.-+.+.+-.+.|.++.
T Consensus 60 l~G~~~l~~~~~~~~~~l~~Gd~i~ip-a~~~H~~~n~~~~~~~~~l~v~~ 109 (112)
T 2opk_A 60 VSGSAGIECEGDTAPRVMRPGDWLHVP-AHCRHRVAWTDGGEPTVWLAVHC 109 (112)
T ss_dssp EESCEEEEETTCSSCEEECTTEEEEEC-TTCCEEEEEECSSSCEEEEEEEE
T ss_pred EeCeEEEEECCEEEEEEECCCCEEEEC-CCCcEEEEeCCCCCCEEEEEEEE
Confidence 7899999999877 765567776554 89999999988764445455544
No 10
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=13.83 E-value=2.8e+02 Score=21.16 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=33.9
Q ss_pred ccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceEEE
Q psy16786 145 MTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVIL 188 (211)
Q Consensus 145 ~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivl 188 (211)
+.|.+++..+|=.|.-..||-+ ++-.|..|.|.-+++..+.++
T Consensus 71 l~G~~~v~v~g~~~~l~~Gd~i-~ip~~~~H~~~n~g~~~~~~l 113 (156)
T 3kgz_A 71 HRGHGQCLVGETISDVAQGDLV-FIPPMTWHQFRANRGDCLGFL 113 (156)
T ss_dssp EEEEEEEEETTEEEEEETTCEE-EECTTCCEEEECCSSSCEEEE
T ss_pred EeCEEEEEECCEEEEeCCCCEE-EECCCCcEEeEeCCCCCEEEE
Confidence 6789999999988876567766 567999999998887765443
Done!