RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16786
(211 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-05
Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 86/242 (35%)
Query: 28 KEVQKKFRSREAEEKEKEDL------VKQDKLEESRSKGNP--------KLKDLTYRSSN 73
+ S E + L + L NP ++D N
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 74 QREPGQPSTPSTNLNTVFRLIK---------EVQKKFRS-------------------RE 105
+ N + + +I+ E +K F +
Sbjct: 347 WKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 106 AEEKEKEDLVKQDKLEESRS--KGNPK-----LKDLYMRPNIVMKRMTGSLEAH---VNG 155
+ + +V +KL S + PK + +Y+ + ++ H V+
Sbjct: 399 VIKSDVMVVV--NKLH-KYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVD- 451
Query: 156 FRYTSVRG-DKVDILYNNIKHAFFQPCDGELVILLHF--HLKNAIMFGK-----KKHVDV 207
Y + D D++ + F+ H HLKN + +D
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYS----------HIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 208 QF 209
+F
Sbjct: 501 RF 502
Score = 43.3 bits (101), Expect = 3e-05
Identities = 32/254 (12%), Positives = 72/254 (28%), Gaps = 79/254 (31%)
Query: 18 TNLNTVFRLIKEVQKKFRSREAEE--------KEKEDLVKQ-DKLEESR-------SKGN 61
+ + F ++ ++ +E + ++ D + + SK
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 62 PKLK-------DLTYR---SSNQREPGQPSTPSTN----LNTVFRLIKEVQKKFRSREAE 107
++ + Y+ S + E QPS + + ++ + K SR
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-- 134
Query: 108 EKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGS----LEAHV-NGFRYTSVR 162
+ L + L E R N+++ + GS + V ++
Sbjct: 135 -QPYLKL--RQALLELRPA-----------KNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 163 GDKV------------DI------LYNNIKHAFFQPCDGELVILLHFH-LKNAI--MFGK 201
K+ + L I + D I L H ++ + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 202 KKHV-------DVQ 208
K + +VQ
Sbjct: 241 KPYENCLLVLLNVQ 254
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 5e-04
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 25/91 (27%)
Query: 29 EVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLN 88
E +K+R + + ++ D + +E R K L++ R S Q E
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------------ 132
Query: 89 TVFRLIKEVQKKFRSREAEE----KEKEDLV 115
+ K +R A++ + D++
Sbjct: 133 ---------KNKINNRIADKAFYQQPDADII 154
Score = 35.5 bits (81), Expect = 0.005
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 96 EVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMR 137
E +K+R + + ++ D + +E R K L++ R
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region;
chromaint, double PH domain, yfact, DNA replication,
RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10
PDB: 2gcj_A
Length = 261
Score = 36.2 bits (83), Expect = 0.004
Identities = 7/66 (10%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 148 SLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKK--HV 205
++ + N R + + + I+ P ++ ++ ++ + G+ +
Sbjct: 41 DIDIYKNSIRLRGKTYE-YKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFL 99
Query: 206 DVQFYT 211
+QF
Sbjct: 100 VLQFQK 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 0.35
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 25 RLIKEVQKKFRSREAEEKEKEDLVKQ-DKLEESRSKGNPKLKDLTYRSSNQREPGQPSTP 83
L ++ + R + + KE + L+++ + LE + S KL+ R E + +T
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT- 983
Query: 84 STNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ--------DKLEESRSKGNPKLK 132
N V L +E+ K + + EK+ + + ++L + N LK
Sbjct: 984 ----NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 30.4 bits (69), Expect = 0.43
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 10/106 (9%)
Query: 28 KEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNL 87
K+ + K K LV Q +E+ ++ +L + S +
Sbjct: 129 KDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQ---------YK 179
Query: 88 NTVFRLIKEVQKKFRSREAEEKEKEDLVKQ-DKLEESRSKGNPKLK 132
L ++++K +S K + + + + + +
Sbjct: 180 KEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGP 225
Score = 27.4 bits (61), Expect = 4.1
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 95 KEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDL 134
K+ + K K LV Q +E+ ++ +L +
Sbjct: 129 KDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRM 168
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III
dependent non-heme intradiol dioxygenase, oxidoredu;
HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M*
3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M*
2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M*
3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Length = 238
Score = 28.7 bits (64), Expect = 1.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 61 NPKLKDLTYRSSNQREPGQ-----PSTPST 85
+PK Y++S R P Q P + S
Sbjct: 16 HPKALTPDYKTSIARSPRQALVSIPQSISE 45
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 27.6 bits (62), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL VFR+ K+V K
Sbjct: 129 TNLTGVFRVTKQVLK 143
Score = 27.6 bits (62), Expect = 2.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL VFR+ K+V K
Sbjct: 129 TNLTGVFRVTKQVLK 143
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 27.4 bits (62), Expect = 2.8
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 18 TNLNTVFRLIKEVQKKFRSR 37
+L+ F L +
Sbjct: 100 LHLDVAFLLAQAAAPHMAEA 119
Score = 27.4 bits (62), Expect = 2.8
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 85 TNLNTVFRLIKEVQKKFRSR 104
+L+ F L +
Sbjct: 100 LHLDVAFLLAQAAAPHMAEA 119
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 27.1 bits (61), Expect = 3.7
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 60 GNPKLKDLTYRSSNQREPGQPSTPST 85
GN +++ + + G+P+ PST
Sbjct: 189 GNAAIREKLAWAKEKYSIGEPTVPST 214
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 27.2 bits (61), Expect = 3.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 18 TNLNTVFRLIKEVQKKFRSR 37
+LN F + K V +
Sbjct: 141 IDLNAPFIVSKAVIPSMIKK 160
Score = 27.2 bits (61), Expect = 3.7
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 85 TNLNTVFRLIKEVQKKFRSR 104
+LN F + K V +
Sbjct: 141 IDLNAPFIVSKAVIPSMIKK 160
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.1 bits (61), Expect = 4.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL ++FRL K V +
Sbjct: 113 TNLTSIFRLSKAVLR 127
Score = 27.1 bits (61), Expect = 4.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL ++FRL K V +
Sbjct: 113 TNLTSIFRLSKAVLR 127
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 26.7 bits (60), Expect = 4.7
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 18 TNLNTVFRLIKEVQKKF 34
NL F + + +K
Sbjct: 115 VNLTGTFLVTQNSLRKM 131
Score = 26.7 bits (60), Expect = 4.7
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 85 TNLNTVFRLIKEVQKKF 101
NL F + + +K
Sbjct: 115 VNLTGTFLVTQNSLRKM 131
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 26.7 bits (60), Expect = 4.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 18 TNLNTVFRLIKEVQKKFRSR 37
NL + + +E R
Sbjct: 129 VNLFGTYYVCREAFSLLRES 148
Score = 26.7 bits (60), Expect = 4.8
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 85 TNLNTVFRLIKEVQKKFRSR 104
NL + + +E R
Sbjct: 129 VNLFGTYYVCREAFSLLRES 148
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 26.7 bits (60), Expect = 4.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 18 TNLNTVFRLIKEVQKK 33
TNL+++FR+ KE +
Sbjct: 112 TNLSSIFRMSKECVRG 127
Score = 26.7 bits (60), Expect = 4.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 85 TNLNTVFRLIKEVQKK 100
TNL+++FR+ KE +
Sbjct: 112 TNLSSIFRMSKECVRG 127
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 26.7 bits (60), Expect = 5.1
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 18 TNLNTVFRLIKEVQKK 33
NL L +E+
Sbjct: 131 VNLTAASTLTRELIHS 146
Score = 26.7 bits (60), Expect = 5.1
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 85 TNLNTVFRLIKEVQKK 100
NL L +E+
Sbjct: 131 VNLTAASTLTRELIHS 146
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 18 TNLNTVFRLIKEVQKK 33
NL F L +E KK
Sbjct: 114 INLKANFILNREAIKK 129
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 85 TNLNTVFRLIKEVQKK 100
NL F L +E KK
Sbjct: 114 INLKANFILNREAIKK 129
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 26.8 bits (60), Expect = 5.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 18 TNLNTVFRLIKEVQK 32
T+L+ +F + K+
Sbjct: 133 TDLDAMFNVTKQFIA 147
Score = 26.8 bits (60), Expect = 5.5
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 85 TNLNTVFRLIKEVQK 99
T+L+ +F + K+
Sbjct: 133 TDLDAMFNVTKQFIA 147
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 26.7 bits (60), Expect = 5.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 18 TNLNTVFRLIKEVQKKFRSR 37
TNL + F + + K+ +R
Sbjct: 116 TNLTSAFLVSRSAAKRMIAR 135
Score = 26.7 bits (60), Expect = 5.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 85 TNLNTVFRLIKEVQKKFRSR 104
TNL + F + + K+ +R
Sbjct: 116 TNLTSAFLVSRSAAKRMIAR 135
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 26.8 bits (60), Expect = 5.7
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 18 TNLNTVFRLIKEVQK 32
F L+ V
Sbjct: 103 ALQIRPFALVNAVAS 117
Score = 26.8 bits (60), Expect = 5.7
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 85 TNLNTVFRLIKEVQK 99
F L+ V
Sbjct: 103 ALQIRPFALVNAVAS 117
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 26.7 bits (60), Expect = 5.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL VF I++
Sbjct: 112 TNLKGVFNCIQKATP 126
Score = 26.7 bits (60), Expect = 5.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL VF I++
Sbjct: 112 TNLKGVFNCIQKATP 126
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 26.7 bits (60), Expect = 5.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL ++F + K+V
Sbjct: 121 TNLTSLFNVTKQVID 135
Score = 26.7 bits (60), Expect = 5.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL ++F + K+V
Sbjct: 121 TNLTSLFNVTKQVID 135
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 26.7 bits (60), Expect = 5.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL VF K V +
Sbjct: 112 TNLKGVFLCTKAVSR 126
Score = 26.7 bits (60), Expect = 5.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL VF K V +
Sbjct: 112 TNLKGVFLCTKAVSR 126
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 26.7 bits (60), Expect = 5.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 18 TNLNTVFRLIKEVQK 32
NL+ VFR +E K
Sbjct: 110 ANLSAVFRTTREAVK 124
Score = 26.7 bits (60), Expect = 5.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 85 TNLNTVFRLIKEVQK 99
NL+ VFR +E K
Sbjct: 110 ANLSAVFRTTREAVK 124
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 26.8 bits (60), Expect = 5.9
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 44 KEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTN----LNTVFRLIKE 96
+ ++++ K ++ K + R P TP+ L V + +
Sbjct: 205 NDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQ 261
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 26.7 bits (60), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL VFRL + V +
Sbjct: 135 TNLKAVFRLSRAVLR 149
Score = 26.7 bits (60), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL VFRL + V +
Sbjct: 135 TNLKAVFRLSRAVLR 149
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 6.2
Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 27 IKEVQKKFRSREAEEKEKEDLVKQD--KLEESRSKGNPKLKDLTYRSSNQREPGQPSTPS 84
++ +KK + + + +E+ + + KL+ + + K+K + +
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED-------- 997
Query: 85 TNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDL 134
N + + K ++++ E+E+ K L + ++K + +L
Sbjct: 998 -QNNKLTKERKLLEERVSDLTTNLAEEEEKAKN--LTKLKNKHESMISEL 1044
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 26.3 bits (59), Expect = 6.4
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 18 TNLNTVFRLIKEVQK 32
NL VF + K
Sbjct: 109 LNLTGVFLCTQAATK 123
Score = 26.3 bits (59), Expect = 6.4
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 85 TNLNTVFRLIKEVQK 99
NL VF + K
Sbjct: 109 LNLTGVFLCTQAATK 123
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 26.3 bits (59), Expect = 6.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL + + K V K
Sbjct: 113 TNLKSAYLCTKAVSK 127
Score = 26.3 bits (59), Expect = 6.4
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL + + K V K
Sbjct: 113 TNLKSAYLCTKAVSK 127
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 26.4 bits (59), Expect = 6.6
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 18 TNLNTVFRLIKEVQK 32
NL VF + K
Sbjct: 136 LNLGGVFLCSRAAAK 150
Score = 26.4 bits (59), Expect = 6.6
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 85 TNLNTVFRLIKEVQK 99
NL VF + K
Sbjct: 136 LNLGGVFLCSRAAAK 150
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.5 bits (59), Expect = 6.9
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 21 NTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQ-REPGQ 79
F L + + + E +D + E+ ++ L++ Y + E
Sbjct: 519 AHTFGLDAKKLNELI-EKENEMLAQDK-LVAETEDRKNT----LEEYIYTLRGKLEEEYA 572
Query: 80 PSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLY 135
P + ++ + +++ E + K K EE S GN
Sbjct: 573 PFASDAEKTKLQGMLNKA-EEWLYDEGFDSIKAKY--IAKYEELASLGNIIRGRYL 625
Score = 26.1 bits (58), Expect = 9.2
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 38 EAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEV 97
E + K K EE S GN + R + E + + S + + E
Sbjct: 597 EGFDSIKAKY--IAKYEELASLGNI----IRGRYLAKEEEKKQAIRSKQEASQMAAMAEK 650
Query: 98 QKKFRSREAEEKEKEDLVKQDK 119
R EAE+KE++ + D
Sbjct: 651 LAAQRKAEAEKKEEKKDTEGDV 672
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 26.5 bits (59), Expect = 6.9
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 18 TNLNTVFRLIKEVQKKFRSREAEEKEK 44
TN F L ++ +
Sbjct: 146 TNAIAPFLLTMSFAQRQKGTNPNCTSS 172
Score = 26.5 bits (59), Expect = 6.9
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 85 TNLNTVFRLIKEVQKKFRSREAEEKEK 111
TN F L ++ +
Sbjct: 146 TNAIAPFLLTMSFAQRQKGTNPNCTSS 172
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 26.4 bits (59), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 18 TNLNTVFRLIKEVQK 32
TNLN++F + + + K
Sbjct: 151 TNLNSLFYITQPISK 165
Score = 26.4 bits (59), Expect = 7.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 85 TNLNTVFRLIKEVQK 99
TNLN++F + + + K
Sbjct: 151 TNLNSLFYITQPISK 165
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 26.4 bits (59), Expect = 7.7
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 60 GNPKLKDLTYRSSNQREPGQPSTPST 85
N L+ + R P+ P+T
Sbjct: 185 NNEVLQSYAAHVAELRSKKLPTIPTT 210
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 26.4 bits (59), Expect = 7.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 18 TNLNTVFRLIKEVQK 32
TNL FR++K +
Sbjct: 117 TNLTGTFRVVKRANR 131
Score = 26.4 bits (59), Expect = 7.8
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 85 TNLNTVFRLIKEVQK 99
TNL FR++K +
Sbjct: 117 TNLTGTFRVVKRANR 131
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 26.0 bits (58), Expect = 8.3
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 18 TNLNTVFRLIKEVQK 32
NL FR+ + +
Sbjct: 111 ANLTGAFRVAQRASR 125
Score = 26.0 bits (58), Expect = 8.3
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 85 TNLNTVFRLIKEVQK 99
NL FR+ + +
Sbjct: 111 ANLTGAFRVAQRASR 125
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 26.0 bits (58), Expect = 9.8
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 60 GNPKLKDLTYRSSNQREPGQPSTPST 85
+ + + + R Q + P
Sbjct: 188 HDSFINEYYRKVKELRVKKQMTLPVI 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.361
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,980,106
Number of extensions: 165315
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 85
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.7 bits)