RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16786
         (211 letters)



>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 238

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 140 IVMKRMTGSLEAHVNGFRYTSVRGDKVD--ILYNNIKHAFFQPCDGELVILLHFHLKNAI 197
               R    ++ + N  R    RG   +  + +  I+     P   ++  ++   ++  +
Sbjct: 14  FTTPRGRYDIDIYKNSIRL---RGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPL 70

Query: 198 MFGKKK--HVDVQFYT 211
             G+     + +QF  
Sbjct: 71  RQGQTTYPFLVLQFQK 86


>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2
          (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 83

 Score = 23.9 bits (52), Expect = 7.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 13 PSTPSTNLNTVFRLIKEVQKKFRS 36
          PS PS  L   F+ +     +F+S
Sbjct: 6  PSNPSIELGPEFKKVATFLSRFKS 29



 Score = 23.9 bits (52), Expect = 7.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 80  PSTPSTNLNTVFRLIKEVQKKFRS 103
           PS PS  L   F+ +     +F+S
Sbjct: 6   PSNPSIELGPEFKKVATFLSRFKS 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,688
Number of extensions: 33347
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)