BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16787
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23935|NDUA5_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos
taurus GN=NDUFA5 PE=1 SV=3
Length = 116
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L +LY KIL +L +P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQIEEVI+QAENEL LARKM+ WKPWEPL++ P QW WP
Sbjct: 67 KLEERLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPPASQWKWP 115
>sp|Q4R5J1|NDUA5_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Macaca fascicularis GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 82/109 (75%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L++LY KIL +LA++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCSTPHERLSILYTKILDVLAEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM +WKPWEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELSLARKMRDWKPWEPLVEEPPADQWKWP 115
>sp|Q63362|NDUA5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Rattus norvegicus GN=Ndufa5 PE=1 SV=3
Length = 116
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 76/109 (69%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P LT+LY KIL LL P AAY+KYT++I ++++V+ +
Sbjct: 7 KTTGLVGLAVCDTPHERLTILYTKILDLLKHFPKHAAYRKYTEQITSEKLELVKLEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E ++ G++EEVI+QAE EL LARKML WKPWEPL++ P QW WP
Sbjct: 67 KLENLLQGGEVEEVILQAEKELSLARKMLQWKPWEPLVEEPPANQWKWP 115
>sp|Q9CPP6|NDUA5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus
musculus GN=Ndufa5 PE=1 SV=3
Length = 116
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 75/109 (68%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P LT+LY K L +L P AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E ++ G++EEVI+QAE EL LARKML WKPWEPL++ P QW WP
Sbjct: 67 KLEALLQGGEVEEVILQAEKELSLARKMLKWKPWEPLVEEPPANQWKWP 115
>sp|Q18359|NDUA5_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5 OS=Caenorhabditis elegans GN=C33A12.1 PE=3 SV=1
Length = 150
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTG+TGL V+ P +LTV+Y +ILR L ++P DAAY+KYT+ +V R+ +VQ I
Sbjct: 41 KTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDIK 100
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E KI GQIEEVI QAE EL R +++ K WEPL++++P QW WP
Sbjct: 101 KLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAWEPLVESAPKGQWSWP 149
>sp|P0CB99|NDUA5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Pongo abelii GN=NDUFA5 PE=3 SV=1
Length = 116
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 78/109 (71%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
QTTGL GLAV P L +LY KIL +L ++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 QTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM WK WEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELNLARKMKEWKLWEPLVEEPPADQWKWP 115
>sp|Q0MQA2|NDUA5_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pan
troglodytes GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L +LY KIL +L ++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM WK WEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWP 115
>sp|Q16718|NDUA5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Homo sapiens GN=NDUFA5 PE=1 SV=3
Length = 116
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L +LY KIL +L ++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM WK WEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWP 115
>sp|Q0MQA1|NDUA5_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Gorilla gorilla gorilla GN=NDUFA5 PE=3 SV=3
Length = 116
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L +LY KIL +L ++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM WK WEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQWKWP 115
>sp|P0CC00|NDUA5_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
OS=Pongo pygmaeus GN=NDUFA5 PE=3 SV=1
Length = 116
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 78/109 (71%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
+TTGL GLAV P L +LY KIL +L ++P +AAY+KYT++I + ++ +V+ +
Sbjct: 7 KTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVK 66
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVWP 112
++E +++ GQ+EEVI+QAE+EL LARKM WK WEPL++ P QW WP
Sbjct: 67 KLEDQLQGGQLEEVILQAEHELNLARKMKEWKLWEPLVEEPPADQWKWP 115
>sp|Q559Z4|NDUA5_DICDI Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5 OS=Dictyostelium discoideum GN=ndufa5 PE=3 SV=1
Length = 117
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
++TG+TGL V P+ +H L LYN++L+ L +P A Y+K + R+ V++ I
Sbjct: 8 KSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETDIV 67
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPP 106
++E KI +GQIEE+I+QA+N+L + + + WE K PP
Sbjct: 68 KIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPP 110
>sp|Q9FLX7|NDUA5_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840
PE=1 SV=1
Length = 169
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 4 QTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSID 63
QTTG+ GL V P+ + L LY+K L+ + +P+D Y+K + R+ V ++ + +
Sbjct: 16 QTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWE 75
Query: 64 EMETKIKSGQIEEVIIQAENELLLARKMLNWKPW 97
+E ++ GQ+EE+I +A +EL L KM+ W PW
Sbjct: 76 MIEKRLGCGQVEELIEEARDELTLIGKMIEWDPW 109
>sp|P24919|NDUA5_NEUCR NADH-ubiquinone oxidoreductase 29.9 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-32 PE=1 SV=1
Length = 273
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 59 AKSIDEMETKIKSGQIEEVIIQAENELLLARKMLNWKPWEPLLKTSPPQQWVW 111
A+ I EME +I SG IEEV+ AE EL L M +PWE L + +P QW +
Sbjct: 216 AEQIAEMEARIGSGLIEEVVQVAEGELKLVDIMTQARPWEALEEEAPEGQWTY 268
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 6 TGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQ 58
TGLTGL P P+ +L LYN L L ++P+ + Y++ + + R+ +V+Q
Sbjct: 28 TGLTGLGTHPSPRSALLYLYNHTLDKLKQIPEHSLYRQSAEALTKHRLAIVEQ 80
>sp|O26359|IF2P_METTH Probable translation initiation factor IF-2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=infB PE=1 SV=1
Length = 594
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 3 LQTTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSI 62
L+ TGL ++ D V+Y+ ILR DD +K+++ TRI+ + + + +
Sbjct: 237 LEVKEETGLGMTID-----AVIYDGILR-----KDDTIAMMTSKDVISTRIRSLLKPRPL 286
Query: 63 DEM-ETKIKSGQIEEVIIQA 81
+EM E++ K +++EV+ A
Sbjct: 287 EEMRESRKKFQKVDEVVAAA 306
>sp|Q8REH4|SMC_FUSNN Chromosome partition protein Smc OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=smc PE=3 SV=2
Length = 1183
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 46 KEIVDTRIKVVQQAKSIDEMETKIKSGQIEEVIIQAENE 84
K+ DTRI + +I+++E I S +IE V +Q E E
Sbjct: 807 KQFSDTRILFLNNQSTIEQLEKDIHSKEIENVELQEEKE 845
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,191,881
Number of Sequences: 539616
Number of extensions: 1455143
Number of successful extensions: 5711
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5691
Number of HSP's gapped (non-prelim): 35
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)