Query psy16787
Match_columns 120
No_of_seqs 118 out of 186
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:05:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1n_A Phosphatidylinositol 3- 94.7 0.012 4.2E-07 33.6 1.5 27 71-97 6-32 (33)
2 2ckz_A DNA-directed RNA polyme 63.8 4.2 0.00014 30.0 2.5 63 17-79 51-155 (161)
3 3ayh_A DNA-directed RNA polyme 41.0 39 0.0013 23.8 4.4 60 19-80 50-130 (136)
4 3mtu_E Head morphogenesis prot 37.6 74 0.0025 21.1 5.1 44 26-71 12-55 (77)
5 3iv1_A Tumor susceptibility ge 34.3 52 0.0018 21.8 3.9 52 39-90 2-60 (78)
6 3ax2_A Mitochondrial import re 32.0 17 0.00059 23.6 1.2 19 10-29 43-61 (73)
7 3v6i_A V-type ATP synthase sub 27.0 66 0.0023 23.0 3.8 38 19-56 77-114 (187)
8 3uv5_A Transcription initiatio 26.5 21 0.00073 27.4 1.1 59 15-73 9-68 (265)
9 3nf2_A Putative polyprenyl syn 24.2 1.1E+02 0.0038 24.6 5.0 36 17-52 304-339 (352)
10 1x3a_A Synapse associated prot 20.6 38 0.0013 22.9 1.3 72 5-76 2-73 (100)
11 1dn1_B Syntaxin 1A, syntaxin b 20.4 1.6E+02 0.0055 22.4 5.1 52 20-73 122-173 (267)
No 1
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=94.70 E-value=0.012 Score=33.59 Aligned_cols=27 Identities=26% Similarity=0.539 Sum_probs=25.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCC
Q psy16787 71 SGQIEEVIIQAENELLLARKMLNWKPW 97 (120)
Q Consensus 71 ~GqIEElI~qAe~EL~L~~km~ewKpW 97 (120)
.|||++||.||-|--.|++...-|-||
T Consensus 6 ~~QV~~LI~~At~~~NL~~my~GW~p~ 32 (33)
T 1w1n_A 6 PEQVDKLIQQATSIERLCQHYIGWCPF 32 (33)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCSCCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHhhhcccC
Confidence 389999999999999999999999887
No 2
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=63.80 E-value=4.2 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCC----------------------------CchHHHHHHHHHHHHHHHhhh----------
Q psy16787 17 PKHSLTVLYNKILRLLAKMPD----------------------------DAAYKKYTKEIVDTRIKVVQQ---------- 58 (120)
Q Consensus 17 pr~~L~~lY~~tL~~L~~iP~----------------------------~a~YR~~tE~it~~Rl~iv~~---------- 58 (120)
+++.|..+-..+++-|+..|. +...|+.++++-.++|.-.+.
T Consensus 51 ~~~~L~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s 130 (161)
T 2ckz_A 51 NHPELQGITRNVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPAN 130 (161)
T ss_dssp CCHHHHHHHHHHHHHHTC--------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHHHHhCCccccccccccccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCC
Confidence 457899999999999998887 233445555555554432222
Q ss_pred ----ccCHHHHHHHhcCchHHHHHH
Q psy16787 59 ----AKSIDEMETKIKSGQIEEVII 79 (120)
Q Consensus 59 ----~~di~~iE~~i~~GqIEElI~ 79 (120)
..-|+..|++|...+|+++|.
T Consensus 131 ~vel~~iIEe~e~Rfsee~ie~IL~ 155 (161)
T 2ckz_A 131 MVHLYSIVEECDARFDEKTIEEMLE 155 (161)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHH
Confidence 236888999999999999985
No 3
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=41.04 E-value=39 Score=23.81 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-------------HHHhhh--------ccCHHHHHHHhcCchHHHH
Q psy16787 19 HSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTR-------------IKVVQQ--------AKSIDEMETKIKSGQIEEV 77 (120)
Q Consensus 19 ~~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~R-------------l~iv~~--------~~di~~iE~~i~~GqIEEl 77 (120)
..|..+..++++-|+..|... .|+-|++.+.+ |.||.- ..-|+..|++|...||+++
T Consensus 50 ~~l~ti~~e~l~YL~~~p~~~--~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfsee~ie~I 127 (136)
T 3ayh_A 50 ENLRTIQFEILKYLSSQGNCE--GLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKL 127 (136)
T ss_dssp HHHHHHHHHHHHHHHTTTCCT--TCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTTTTHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcc--ccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCHHHHHHH
Confidence 567888888999999998765 22334433333 222211 1256777999999999999
Q ss_pred HHH
Q psy16787 78 IIQ 80 (120)
Q Consensus 78 I~q 80 (120)
|.-
T Consensus 128 L~~ 130 (136)
T 3ayh_A 128 VEK 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 4
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=37.62 E-value=74 Score=21.11 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHhhhccCHHHHHHHhcC
Q psy16787 26 NKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEMETKIKS 71 (120)
Q Consensus 26 ~~tL~~L~~iP~~a~YR~~tE~it~~Rl~iv~~~~di~~iE~~i~~ 71 (120)
..||++|-. |+- +--.-||++-+-|.+-+--+..|..||+++.+
T Consensus 12 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 12 EDILNKLLD-PEL-AQSERTEALQQLRVNYGSFVSEYNDLEEKVAH 55 (77)
T ss_dssp HHHHHHTTC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-HHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777743 322 22345899999999999889999999998853
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.31 E-value=52 Score=21.78 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHh-hh----ccCHHHHHHHhcCch--HHHHHHHHHHHHHHHHH
Q psy16787 39 AAYKKYTKEIVDTRIKVV-QQ----AKSIDEMETKIKSGQ--IEEVIIQAENELLLARK 90 (120)
Q Consensus 39 a~YR~~tE~it~~Rl~iv-~~----~~di~~iE~~i~~Gq--IEElI~qAe~EL~L~~k 90 (120)
|..+.+||...+.|++=. .. -..+...++.|..|+ |+++|..-+.|-.-+++
T Consensus 2 ~SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 2 SSLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456778888888776422 11 146677788887775 78888777776655544
No 6
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=31.96 E-value=17 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=13.6
Q ss_pred ccccCCChHHHHHHHHHHHH
Q psy16787 10 GLAVSPDPKHSLTVLYNKIL 29 (120)
Q Consensus 10 GL~V~p~pr~~L~~lY~~tL 29 (120)
.|.||++|.. |+.+|++||
T Consensus 43 Al~Vc~qP~~-LL~i~q~tl 61 (73)
T 3ax2_A 43 AIAVCGQPQQ-LLQVLQQTL 61 (73)
T ss_dssp HHHTCSSCHH-HHHHHHHHS
T ss_pred HHHHcCCHHH-HHHHHHhhC
Confidence 4679999975 556677664
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=27.01 E-value=66 Score=23.03 Aligned_cols=38 Identities=8% Similarity=0.281 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHh
Q psy16787 19 HSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVV 56 (120)
Q Consensus 19 ~~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~Rl~iv 56 (120)
..+..+|....+.|..|+.+..|......++..=+..+
T Consensus 77 eli~~v~~~a~~~L~~~~~~~~Y~~~L~~Li~ea~~~l 114 (187)
T 3v6i_A 77 EVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEAL 114 (187)
T ss_dssp HHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHHHc
Confidence 45677888999999999999889999999998855443
No 8
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=26.46 E-value=21 Score=27.36 Aligned_cols=59 Identities=12% Similarity=0.365 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHHHhhhccCHHHHHHHhcCch
Q psy16787 15 PDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKE-IVDTRIKVVQQAKSIDEMETKIKSGQ 73 (120)
Q Consensus 15 p~pr~~L~~lY~~tL~~L~~iP~~a~YR~~tE~-it~~Rl~iv~~~~di~~iE~~i~~Gq 73 (120)
.+|...|..++..+|+.|...|.+..+++-|.. ....=.++|+.-=|...|+++|..|.
T Consensus 9 ~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~ 68 (265)
T 3uv5_A 9 TDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 68 (265)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCC
Confidence 467889999999999999988888777764321 12223445555557777777776543
No 9
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=24.25 E-value=1.1e+02 Score=24.57 Aligned_cols=36 Identities=6% Similarity=-0.054 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy16787 17 PKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTR 52 (120)
Q Consensus 17 pr~~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~R 52 (120)
.+........+.++.|..+|.++.+|+...+++.+-
T Consensus 304 a~~~a~~~~~~A~~~L~~lp~~~~~r~~L~~la~~~ 339 (352)
T 3nf2_A 304 TADEARRQHTIAIEALDAVDMPDRVRDRFTALADFV 339 (352)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 345666778888999999999999999998888764
No 10
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=20.57 E-value=38 Score=22.93 Aligned_cols=72 Identities=11% Similarity=0.200 Sum_probs=54.2
Q ss_pred cccccccccCCChHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhhhccCHHHHHHHhcCchHHH
Q psy16787 5 TTGLTGLAVSPDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEMETKIKSGQIEE 76 (120)
Q Consensus 5 tTGltGL~V~p~pr~~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~Rl~iv~~~~di~~iE~~i~~GqIEE 76 (120)
+.|-+|......-...|..|-..-=.-+..-|....|.-..++.+.....+.+..++++++=.+|=-+.|.|
T Consensus 2 ~~~~~g~~~~~~~ka~i~~L~~D~~tfl~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~~~LVP~~v~e 73 (100)
T 1x3a_A 2 SSGSSGTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKE 73 (100)
T ss_dssp CCCCCCSCTTHHHHHHHHHHHTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTTTTSCH
T ss_pred CCccCCCCcHHHHHHHHHHHhcChHhhccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHHHHHCCCCcCH
Confidence 568888877777777777777766666666666777887888888888889988888888877776665544
No 11
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=20.39 E-value=1.6e+02 Score=22.44 Aligned_cols=52 Identities=13% Similarity=0.372 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhhhccCHHHHHHHhcCch
Q psy16787 20 SLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQQAKSIDEMETKIKSGQ 73 (120)
Q Consensus 20 ~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~Rl~iv~~~~di~~iE~~i~~Gq 73 (120)
.|..-|..++..-..+ .+.||....+-+...+.|+....+-++||+-|..|.
T Consensus 122 ~L~~~f~~~m~~yq~~--Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~ 173 (267)
T 1dn1_B 122 TLSRKFVEVMSEYNAT--QSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGN 173 (267)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCc
Confidence 3444444444444443 577888888887778889887777788887765553
Done!