Query psy16787
Match_columns 120
No_of_seqs 118 out of 186
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:05:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16787.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16787hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1irqa_ a.43.1.4 (A:) Omega tr 27.2 29 0.0021 19.5 3.1 24 62-85 16-39 (48)
2 d2dm9a1 d.81.4.1 (A:81-198) V- 27.1 35 0.0026 21.0 3.9 37 20-57 2-38 (118)
3 d1eqfa1 a.29.2.1 (A:1359-1497) 24.1 14 0.001 24.2 1.3 59 15-73 21-80 (139)
4 d1em2a_ d.129.3.2 (A:) Lipid t 19.5 38 0.0028 22.2 3.0 30 71-100 3-33 (214)
5 d1nbfa_ d.3.1.9 (A:) Ubiquitin 18.6 17 0.0012 25.8 0.9 10 3-12 1-10 (347)
6 d2afpa_ d.169.1.1 (A:) Type II 18.6 43 0.0032 20.0 2.9 29 83-111 49-77 (129)
7 d1gq2a1 c.2.1.7 (A:280-580) Mi 18.0 48 0.0035 24.7 3.5 26 89-114 268-293 (298)
8 d1eg3a1 a.39.1.7 (A:85-209) Dy 16.3 28 0.002 23.1 1.6 26 18-45 1-26 (125)
9 d1rdl1_ d.169.1.1 (1:) Mannose 14.7 26 0.0019 21.0 1.0 30 82-111 32-61 (111)
10 d1n08a_ b.43.5.1 (A:) Riboflav 13.0 36 0.0026 23.0 1.4 30 72-101 119-148 (154)
No 1
>d1irqa_ a.43.1.4 (A:) Omega transcriptional repressor {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.25 E-value=29 Score=19.45 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=20.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHH
Q psy16787 62 IDEMETKIKSGQIEEVIIQAENEL 85 (120)
Q Consensus 62 i~~iE~~i~~GqIEElI~qAe~EL 85 (120)
|-+||..-++|.+.|+..||-.|.
T Consensus 16 iikietaknggnvkevm~~~l~~~ 39 (48)
T d1irqa_ 16 IIKIETAKNGGNVKEVMDQALEEY 39 (48)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eeEEEecccCCCHHHHHHHHHHHH
Confidence 567898889999999999987663
No 2
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=27.05 E-value=35 Score=21.02 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHhh
Q psy16787 20 SLTVLYNKILRLLAKMPDDAAYKKYTKEIVDTRIKVVQ 57 (120)
Q Consensus 20 ~L~~lY~~tL~~L~~iP~~a~YR~~tE~it~~Rl~iv~ 57 (120)
.+..+|++..+.|..++. ..|++..+.+..+=+.-+.
T Consensus 2 ~i~~v~~~a~~~l~~~~~-~~Y~~~L~~Li~~a~~~l~ 38 (118)
T d2dm9a1 2 IISSVLEEVKRRLETMSE-DEYFESVKALLKEAIKELN 38 (118)
T ss_dssp HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCh-hHHHHHHHHHHHHHHHHhC
Confidence 467889999999999987 4799999999876554443
No 3
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.11 E-value=14 Score=24.21 Aligned_cols=59 Identities=12% Similarity=0.365 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-HHHHHHHHhhhccCHHHHHHHhcCch
Q psy16787 15 PDPKHSLTVLYNKILRLLAKMPDDAAYKKYTKE-IVDTRIKVVQQAKSIDEMETKIKSGQ 73 (120)
Q Consensus 15 p~pr~~L~~lY~~tL~~L~~iP~~a~YR~~tE~-it~~Rl~iv~~~~di~~iE~~i~~Gq 73 (120)
.+|.-.|..+...+|+.|.+.|.+..++.-|-. ..-.=.++|..==|...|+++|..|.
T Consensus 21 ~~~~~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~ 80 (139)
T d1eqfa1 21 TDPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 80 (139)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCC
Confidence 357778999999999999999998888774321 11112345544458888988888775
No 4
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.47 E-value=38 Score=22.15 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhh-cCCCCcC
Q psy16787 71 SGQIEEVIIQAENELLLARKMLN-WKPWEPL 100 (120)
Q Consensus 71 ~GqIEElI~qAe~EL~L~~km~e-wKpWE~L 100 (120)
++|-+|.+.++++.+..+..|+. -.-|+..
T Consensus 3 s~~~~~y~~~~~e~~~~~~~il~~~~~W~~~ 33 (214)
T d1em2a_ 3 SAQEREYIRQGKEATAVVDQILAQEENWKFE 33 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTGGGCEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCeEE
Confidence 57999999999999999999974 3457643
No 5
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.59 E-value=17 Score=25.81 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=8.6
Q ss_pred CCcccccccc
Q psy16787 3 LQTTGLTGLA 12 (120)
Q Consensus 3 K~tTGltGL~ 12 (120)
|+-||++||.
T Consensus 1 ~~~~G~vGL~ 10 (347)
T d1nbfa_ 1 KKHTGYVGLK 10 (347)
T ss_dssp CCSSSCCCBC
T ss_pred CCCCCCcCCe
Confidence 6789999996
No 6
>d2afpa_ d.169.1.1 (A:) Type II antifreeze protein {Sea raven (Hemitripterus americanus) [TaxId: 8094]}
Probab=18.59 E-value=43 Score=20.03 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCCcCcCCCCCCCCCC
Q psy16787 83 NELLLARKMLNWKPWEPLLKTSPPQQWVW 111 (120)
Q Consensus 83 ~EL~L~~km~ewKpWE~L~e~p~~~QW~w 111 (120)
+|...+..+..-..|=.+.-....|+|.|
T Consensus 49 ~e~~fl~~~~~~~~Wig~~~~~~~~~w~W 77 (129)
T d2afpa_ 49 EEHSFIQTLNAGVVWIGGSACLQAGAWTW 77 (129)
T ss_dssp HHHHHHHHHCSSCBCCSCBCSSSSSCCBS
T ss_pred hcchhhcccccCceeeeeecccccceeec
Confidence 44556667777778988888889999999
No 7
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=18.04 E-value=48 Score=24.72 Aligned_cols=26 Identities=8% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHhhcCCCCcCcCCCCCCCCCCCCC
Q psy16787 89 RKMLNWKPWEPLLKTSPPQQWVWPPA 114 (120)
Q Consensus 89 ~km~ewKpWE~L~e~p~~~QW~wp~~ 114 (120)
+..++.+.|+|-...=-+.+|+||..
T Consensus 268 ~~~i~~~~w~P~Y~~~~~~~y~~~~~ 293 (298)
T d1gq2a1 268 EAFIRSQVYSTDYNCFVADSYTWPEE 293 (298)
T ss_dssp HHHHHTTSCCCSCCCCSCCCCCCCSS
T ss_pred HHHHHHhcCCCcccCcCCccccCchh
Confidence 35677889999877778999999976
No 8
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.32 E-value=28 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHH
Q psy16787 18 KHSLTVLYNKILRLLAKMPDDAAYKKYT 45 (120)
Q Consensus 18 r~~L~~lY~~tL~~L~~iP~~a~YR~~t 45 (120)
||++..+|+.. .-+..| +-|+||.+.
T Consensus 1 HP~m~el~~~l-~dln~I-rfsaYRTA~ 26 (125)
T d1eg3a1 1 HPKMTELYQSL-ADLNNV-RFSAYRTAM 26 (125)
T ss_dssp CHHHHHHHHHG-GGGTTC-SSHHHHHHH
T ss_pred CchHHHHHHHH-Hhhchh-hHHHHHHHH
Confidence 57888888874 556666 889999875
No 9
>d1rdl1_ d.169.1.1 (1:) Mannose-binding protein A, C-lectin domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.67 E-value=26 Score=20.99 Aligned_cols=30 Identities=3% Similarity=-0.102 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCCCCcCcCCCCCCCCCC
Q psy16787 82 ENELLLARKMLNWKPWEPLLKTSPPQQWVW 111 (120)
Q Consensus 82 e~EL~L~~km~ewKpWE~L~e~p~~~QW~w 111 (120)
.+|...+..+..-..|=.|.....+|+|.|
T Consensus 32 ~~e~~~l~~~~~~~~WiGl~~~~~~~~~~w 61 (111)
T d1rdl1_ 32 AEENRAIQNVAKDVAFLGITDQRTENVFED 61 (111)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSSSTTCCEE
T ss_pred HHHhHHHhhcccceeeEEeeecCccceeee
Confidence 344556667778888988887888899999
No 10
>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=12.99 E-value=36 Score=23.03 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCCcCc
Q psy16787 72 GQIEEVIIQAENELLLARKMLNWKPWEPLL 101 (120)
Q Consensus 72 GqIEElI~qAe~EL~L~~km~ewKpWE~L~ 101 (120)
..+|+|+.|-+.....|+.+++--+|....
T Consensus 119 ~s~e~L~~qI~~D~~~ar~~L~~~~~~~~~ 148 (154)
T d1n08a_ 119 AGLDKLIEDIHTDIRVALNSMDRPSYSSYK 148 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTSHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcChhHHhhc
Confidence 468999999999999999999876665543
Done!