RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16787
         (120 letters)



>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 440

 Score = 29.0 bits (65), Expect = 0.11
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 5  TTGLTGL-AVSPDPKHSLTVLYNKILRLLAKMPD--DAAYKKYTKEIVDTRIKV 55
          T G++ L  + PD   +   +Y KI    A +    D    +    IV+ R+ V
Sbjct: 24 TMGISLLDCIDPDINRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSV 77


>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 124

 Score = 24.0 bits (52), Expect = 4.9
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 78  IIQAENELLLARKMLNWKPWEPLL 101
            + A     LA   +  + W   L
Sbjct: 45  SVIAGAAFHLALYTVTGQSWPESL 68


>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 22.3 bits (47), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 41 YKKYTKEIVDTRIKVVQQAK 60
          Y++Y  EI++  I VV   K
Sbjct: 4  YRQYNSEILEEAISVVMSGK 23


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 23.5 bits (50), Expect = 9.6
 Identities = 1/18 (5%), Positives = 7/18 (38%)

Query: 82  ENELLLARKMLNWKPWEP 99
            +++   +    + P + 
Sbjct: 267 ADDVKQLKSKFGFNPDKS 284


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,237
Number of extensions: 19678
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)