BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16788
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1REU|A Chain A, Structure Of The Bone Morphogenetic Protein 2 Mutant L51p
Length = 103
Score = 183 bits (464), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/100 (81%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFP A+HLNSTNHAIVQTL+NSV + +
Sbjct: 5 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPPADHLNSTNHAIVQTLVNSVNSK-I 63
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVVLK YQDM V GCGCR
Sbjct: 64 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 103
>pdb|1ES7|A Chain A, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|1ES7|C Chain C, Complex Between Bmp-2 And Two Bmp Receptor Ia Ectodomains
pdb|2QJ9|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJ9|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-Ia Variant B1
pdb|2QJA|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJA|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant B12
pdb|2QJB|A Chain A, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
pdb|2QJB|B Chain B, Crystal Structure Analysis Of Bmp-2 In Complex With
Bmpr-ia Variant Ia/ib
Length = 116
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 18 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 76
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVVLK YQDM V GCGCR
Sbjct: 77 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 116
>pdb|3BMP|A Chain A, Human Bone Morphogenetic Protein-2 (Bmp-2)
pdb|1REW|A Chain A, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|1REW|B Chain B, Structural Refinement Of The Complex Of Bone Morphogenetic
Protein 2 And Its Type Ia Receptor
pdb|2GOO|A Chain A, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2GOO|D Chain D, Ternary Complex Of Bmp-2 Bound To Bmpr-Ia-Ecd And
Actrii-Ecd
pdb|2H62|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
pdb|2H62|B Chain B, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 16 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 74
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVVLK YQDM V GCGCR
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 114
>pdb|2H64|A Chain A, Crystal Structure Of A Ternary Ligand-Receptor Complex Of
Bmp-2
Length = 114
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/100 (81%), Positives = 88/100 (88%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 16 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 74
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVV K YQDM V GCGCR
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVKKDYQDMVVEGCGCR 114
>pdb|3BK3|A Chain A, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
pdb|3BK3|B Chain B, Crystal Structure Of The Complex Of Bmp-2 And The First
Von Willebrand Domain Type C Of Crossveinless-2
Length = 114
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 87/100 (87%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY A C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 16 RHPLYVDFSDVGWNDWIVAPPGYHAMYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 74
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISML LDE+ KVVLK YQDM V GCGCR
Sbjct: 75 PKACCVPTELSAISMLMLDENEKVVLKNYQDMVVEGCGCR 114
>pdb|1M4U|L Chain L, Crystal Structure Of Bone Morphogenetic Protein-7 (bmp-7)
In Complex With The Secreted Antagonist Noggin
pdb|1LX5|A Chain A, Crystal Structure Of The Bmp7ACTRII EXTRACELLULAR DOMAIN
COMPLEX
pdb|1LXI|A Chain A, Refinement Of Bmp7 Crystal Structure
pdb|1BMP|A Chain A, Bone Morphogenetic Protein-7
Length = 139
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A+ C+G+C FPL ++N+TNHAIVQTL++ + PETV
Sbjct: 40 KHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETV 99
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
PK CC PT L+AIS+LY D+ + V+LK Y++M V CGC
Sbjct: 100 PKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 138
>pdb|2R53|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
pdb|2R53|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
Variant B2 (b2-bmp-6)
Length = 116
Score = 142 bits (358), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/99 (58%), Positives = 75/99 (75%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A C G+C FPL H+N+TNHAIVQTL++ + PE V
Sbjct: 17 KHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYV 76
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
PK CC PT L+AIS+LY D+++ V+LK Y++M V CGC
Sbjct: 77 PKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 115
>pdb|2QCW|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
pdb|2QCW|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-6 (Bmp-6)
Length = 132
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 75/100 (75%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A C G+C FPL H+N+TNHAIVQTL++ + PE V
Sbjct: 33 KHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYV 92
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PK CC PT L+AIS+LY D+++ V+LK Y++M V CGC
Sbjct: 93 PKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGCH 132
>pdb|3QB4|A Chain A, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
pdb|3QB4|C Chain C, Crystal Structure Of A Tgf-Beta Ligand-Receptor Complex
Length = 117
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 75/100 (75%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R L+V+F D+GW+DWI+AP Y+AF C+G C FPLA HL TNHA++QTLMNS+ PE+
Sbjct: 18 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLASHLEPTNHAVIQTLMNSMDPEST 77
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
P CCVPT LS IS+L++D N VV K Y+DM V CGCR
Sbjct: 78 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR 117
>pdb|2R52|A Chain A, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
pdb|2R52|B Chain B, Crystal Structure Analysis Of Bone Morphogenetic Protein-6
(Bmp-6)
Length = 143
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 75/100 (75%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A C G+C FPL H+N+TNHAIVQTL++ + PE V
Sbjct: 44 KHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYV 103
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PK CC PT L+AIS+LY D+++ V+LK Y++M V CGC
Sbjct: 104 PKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGCH 143
>pdb|1WAQ|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf-5)
pdb|3EVS|B Chain B, Crystal Structure Of The Gdf-5:bmp Receptor Ib Complex
Length = 117
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 74/100 (74%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R L+V+F D+GW+DWI+AP Y+AF C+G C FPL HL TNHA++QTLMNS+ PE+
Sbjct: 18 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 77
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
P CCVPT LS IS+L++D N VV K Y+DM V CGCR
Sbjct: 78 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR 117
>pdb|2BHK|A Chain A, Crystal Structure Of Human Growth And Differentiation
Factor 5 (Gdf5)
Length = 120
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 74/100 (74%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R L+V+F D+GW+DWI+AP Y+AF C+G C FPL HL TNHA++QTLMNS+ PE+
Sbjct: 21 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 80
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
P CCVPT LS IS+L++D N VV K Y+DM V CGCR
Sbjct: 81 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR 120
>pdb|1ZKZ|A Chain A, Crystal Structure Of Bmp9
pdb|4FAO|A Chain A, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|B Chain B, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|G Chain G, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|H Chain H, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|M Chain M, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|N Chain N, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|S Chain S, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|T Chain T, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|AA Chain a, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|BB Chain b, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|GG Chain g, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
pdb|4FAO|HH Chain h, Specificity And Structure Of A High Affinity Activin-Like
1 (Alk1) Signaling Complex
Length = 110
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Query: 325 LYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKA 384
L V+F D+GW+ WI+AP Y+A+ CKG C FPLA+ + T HAIVQTL++ P V KA
Sbjct: 13 LRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKVGKA 72
Query: 385 CCVPTALSAISMLYLDEDNKVVLKT-YQDMAVTGCGCR 421
CCVPT LS IS+LY D+ LK Y+ M+V CGCR
Sbjct: 73 CCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110
>pdb|2QCQ|A Chain A, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
pdb|2QCQ|B Chain B, Crystal Structure Of Bone Morphogenetic Protein-3 (Bmp-3)
Length = 110
Score = 113 bits (282), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQ-PET 380
R L VDFAD+GW++WI++P +DA+ C G C FP+ + L +NHA +Q+++ +V
Sbjct: 10 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 69
Query: 381 VPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
+P+ CCVP +S++S+L+ DE+ VVLK Y +M V C CR
Sbjct: 70 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCACR 110
>pdb|1NYS|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYS|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
P41
pdb|1NYU|B Chain B, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1NYU|D Chain D, Crystal Structure Of Activin A Bound To The Ecd Of Actriib
pdb|1S4Y|B Chain B, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|1S4Y|D Chain D, Crystal Structure Of The ActivinACTRIIB EXTRACELLULAR
DOMAIN
pdb|2B0U|A Chain A, The Structure Of The Follistatin:activin Complex
pdb|2B0U|B Chain B, The Structure Of The Follistatin:activin Complex
pdb|2ARP|A Chain A, Activin A In Complex With Fs12 Fragment Of Follistatin
pdb|2ARV|A Chain A, Structure Of Human Activin A
pdb|2ARV|B Chain B, Structure Of Human Activin A
pdb|2P6A|A Chain A, The Structure Of The Activin:follistatin 315 Complex
pdb|2P6A|B Chain B, The Structure Of The Activin:follistatin 315 Complex
pdb|3B4V|A Chain A, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|B Chain B, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|E Chain E, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|F Chain F, X-Ray Structure Of Activin In Complex With Fstl3
Length = 116
Score = 92.4 bits (228), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 316 KILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLA----EHLNSTNHAIVQT 371
K+ I + +V F D+GWNDWI+AP GY A C+G+CP +A L+ + I
Sbjct: 7 KVNICCKKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHY 66
Query: 372 LMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
M P K+CCVPT L +SMLY D+ ++ K Q+M V CGC
Sbjct: 67 RMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>pdb|3HH2|A Chain A, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3HH2|B Chain B, Crystal Structure Of The Myostatin:follistatin 288 Complex
pdb|3SEK|B Chain B, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 109
Score = 75.1 bits (183), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R+PL VDF GW DWI+AP Y A C G+C F + T+ L++ P
Sbjct: 17 RYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFLQKYPHTH------LVHQANPRGS 69
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CC PT +S I+MLY + +++ M V CGC
Sbjct: 70 AGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGC 108
>pdb|1TFG|A Chain A, An Unusual Feature Revealed By The Crystal Structure At
2.2 Angstroms Resolution Of Human Transforming Growth
Factor-Beta2
pdb|2TGI|A Chain A, Crystal Structure Of Transforming Growth Factor-Beta2: An
Unusual Fold For The Superfamily
Length = 112
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 324 PLYVDFA-DVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVP 382
PLY+DF D+GW WI P GY+A C G CP+ + + T H+ V +L N++ PE
Sbjct: 19 PLYIDFKRDLGWK-WIHEPKGYNANFCAGACPYLWS---SDTQHSRVLSLYNTINPEASA 74
Query: 383 KACCVPTALSAISML-YLDEDNKVVLKTYQDMAVTGCGC 420
CCV L +++L Y+ + K+ + +M V C C
Sbjct: 75 SPCCVSQDLEPLTILYYIGKTPKI--EQLSNMIVKSCKC 111
>pdb|1KTZ|A Chain A, Crystal Structure Of The Human Tgf-Beta Type Ii Receptor
Extracellular Domain In Complex With Tgf-Beta3
pdb|1TGJ|A Chain A, Human Transforming Growth Factor-beta 3, Crystallized From
Dioxane
pdb|1TGK|A Chain A, Human Transforming Growth Factor Beta 3, Crystallized From
Peg 4000
pdb|2PJY|A Chain A, Structural Basis For Cooperative Assembly Of The Tgf-Beta
Signaling Complex
pdb|3EO1|C Chain C, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|F Chain F, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|I Chain I, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
pdb|3EO1|L Chain L, Structure Of The Fab Fragment Of Gc-1008 In Complex With
Transforming Growth Factor-Beta 3
Length = 112
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 324 PLYVDF-ADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVP 382
PLY+DF D+GW W+ P GY A C G CP+ + T H+ V L N++ PE
Sbjct: 19 PLYIDFRQDLGWK-WVHEPKGYYANFCSGPCPYLRSA---DTTHSTVLGLYNTLNPEASA 74
Query: 383 KACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CCVP L +++LY V + +M V C C
Sbjct: 75 SPCCVPQDLEPLTILYYVGRTPKV-EQLSNMVVKSCKC 111
>pdb|3RJR|A Chain A, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|B Chain B, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|C Chain C, Crystal Structure Of Pro-tgf Beta 1
pdb|3RJR|D Chain D, Crystal Structure Of Pro-tgf Beta 1
Length = 363
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 325 LYVDF-ADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPK 383
LY+DF D+GW WI P GY A C G CP+ + T ++ V L N P
Sbjct: 271 LYIDFRKDLGWK-WIHEPKGYHANFCLGPCPYIWSL---DTQYSKVLALYNQHNPGASAA 326
Query: 384 ACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CCVP AL + ++Y K ++ +M V C C
Sbjct: 327 PCCVPQALEPLPIVYY-VGRKPKVEQLSNMIVRSCKC 362
>pdb|1KLD|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLD|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33
Structures
pdb|1KLC|A Chain A, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLC|B Chain B, Solution Structure Of Tgf-B1, Nmr, Minimized Average
Structure
pdb|1KLA|A Chain A, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|1KLA|B Chain B, Solution Structure Of Tgf-B1, Nmr, Models 1-17 Of 33
Structures
pdb|3KFD|A Chain A, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|B Chain B, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|C Chain C, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
pdb|3KFD|D Chain D, Ternary Complex Of Tgf-B1 Reveals Isoform-Specific Ligand
Re And Receptor Recruitment In The Superfamily
Length = 112
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 325 LYVDF-ADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPK 383
LY+DF D+GW WI P GY A C G CP+ + T ++ V L N P
Sbjct: 20 LYIDFRKDLGWK-WIHEPKGYHANFCLGPCPYIWSL---DTQYSKVLALYNQHNPGASAA 75
Query: 384 ACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CCVP AL + ++Y K ++ +M V C C
Sbjct: 76 PCCVPQALEPLPIVYY-VGRKPKVEQLSNMIVRSCKC 111
>pdb|2ASK|A Chain A, Structure Of Human Artemin
pdb|2ASK|B Chain B, Structure Of Human Artemin
Length = 113
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 381 VPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
V + CC PT A+S + D +T ++ T CGC
Sbjct: 76 VSQPCCRPTRYEAVSFM----DVNSTWRTVDRLSATACGC 111
>pdb|2GYR|A Chain A, Crystal Structure Of Human Artemin
pdb|2GYR|B Chain B, Crystal Structure Of Human Artemin
pdb|2GYR|C Chain C, Crystal Structure Of Human Artemin
pdb|2GYR|D Chain D, Crystal Structure Of Human Artemin
pdb|2GYR|E Chain E, Crystal Structure Of Human Artemin
pdb|2GYR|F Chain F, Crystal Structure Of Human Artemin
pdb|2GYZ|A Chain A, Crystal Structure Of Human Artemin
Length = 105
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 381 VPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
V + CC PT A+S + D +T ++ T CGC
Sbjct: 62 VSQPCCRPTRYEAVSFM----DVNSTWRTVDRLSATACGC 97
>pdb|2GH0|C Chain C, Growth FactorRECEPTOR COMPLEX
pdb|2GH0|D Chain D, Growth FactorRECEPTOR COMPLEX
Length = 101
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 381 VPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
V + CC PT A+S + D +T ++ T CGC
Sbjct: 64 VSQPCCRPTRYEAVSFM----DVNSTWRTVDRLSATACGC 99
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 29/119 (24%)
Query: 90 RSANTVRTFTHQVTNIDKRFK----YLNKFRLHFDVTSLP---------------DTERV 130
R NT+ Q I+ R + YL+ F LHF V + P D ++
Sbjct: 326 RMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDLKQG 385
Query: 131 QSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIKGISKPVLRIVDSVLVDSTS--GEN 187
+S +L + M+ D+H I+ DI + +GI K L+ +D V S GEN
Sbjct: 386 ESFSKKLQKVMH---DEHN-----IILDIPEMDFEGIKKTYLKEIDHVFDRSVKARGEN 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,178,186
Number of Sequences: 62578
Number of extensions: 507201
Number of successful extensions: 1136
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 46
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)