Query psy16788
Match_columns 423
No_of_seqs 209 out of 1052
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:05:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3900|consensus 100.0 7.3E-57 1.6E-61 464.5 26.2 369 19-421 25-413 (413)
2 smart00204 TGFB Transforming g 100.0 4.9E-40 1.1E-44 276.1 10.2 102 292-421 1-102 (102)
3 PF00019 TGF_beta: Transformin 100.0 1.6E-35 3.4E-40 250.2 8.6 104 290-421 2-105 (105)
4 PHA02913 TGF-beta-like protein 100.0 7.2E-35 1.6E-39 261.5 10.2 111 268-420 62-172 (172)
5 PF00688 TGFb_propeptide: TGF- 100.0 3.9E-32 8.5E-37 258.2 14.8 229 20-254 7-238 (238)
6 PF06848 Disaggr_repeat: Disag 97.8 0.00033 7.1E-09 63.7 11.2 106 113-220 30-162 (182)
7 smart00041 CT C-terminal cysti 94.7 0.071 1.5E-06 42.9 5.3 62 344-423 18-80 (82)
8 PF00007 Cys_knot: Cystine-kno 66.1 6.6 0.00014 32.8 3.2 63 342-421 22-86 (105)
9 PF03045 DAN: DAN domain; Int 64.4 25 0.00054 30.4 6.6 70 341-422 46-118 (121)
10 KOG3900|consensus 50.7 5.2 0.00011 41.6 0.0 22 282-312 312-333 (413)
11 PHA02913 TGF-beta-like protein 48.1 6 0.00013 36.4 -0.0 12 297-312 85-97 (172)
12 cd00135 PDGF Platelet-derived 46.8 37 0.00079 27.6 4.4 38 336-399 21-58 (86)
13 PF02512 UK: Virulence determi 44.6 8.7 0.00019 30.7 0.4 13 382-394 64-76 (96)
14 smart00141 PDGF Platelet-deriv 43.4 56 0.0012 26.4 4.9 59 336-421 21-82 (83)
15 KOG3936|consensus 40.7 11 0.00023 30.7 0.3 27 307-333 37-63 (100)
16 smart00067 GHA Glycoprotein ho 35.0 55 0.0012 26.3 3.5 51 342-397 16-66 (87)
17 PF13319 DUF4090: Protein of u 32.6 56 0.0012 26.1 3.2 28 41-76 8-35 (84)
18 PF08137 DVL: DVL family; Int 20.6 25 0.00054 20.6 -0.5 8 2-9 12-19 (19)
No 1
>KOG3900|consensus
Probab=100.00 E-value=7.3e-57 Score=464.55 Aligned_cols=369 Identities=34% Similarity=0.494 Sum_probs=252.8
Q ss_pred ccCcCCcchhhh-hHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChHHHHHHHhhhcCCCCC-CC-----CCCCCccccc
Q psy16788 19 ISTTSAEDSVQL-DKKALQQVESNLLSLFGLNRRPRPNRKNVRIPKAMLDLYKLQTGQDVDT-SM-----LPLPGRHTRS 91 (423)
Q Consensus 19 ~~tcs~~d~~~~-~~~~le~ie~~IL~~LGL~~rP~p~~~~~~vP~~MldLY~~~~~~~~~~-~~-----~~~~~~~~~~ 91 (423)
..+|.+...... ++..++.++..||.+|.++.+|.+.+. ..+|.+|+++|+....+.++. .. ..........
T Consensus 25 ~~~~~~~~~~~~~~~~~~e~~~~~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (413)
T KOG3900|consen 25 LSLLERSLLSQLQRKSRLEALKRLILEKLPLPSAPLFNKP-SSAPLQLLDLLRAGRGEPEESDLERLNSRSEEDLELLAS 103 (413)
T ss_pred cCccccccchhhhhhhHHHHHhhcchhcccccCccccccc-cccCHHhhhhhhhcccCCccccccccccccccccccccc
Confidence 344554443333 334889999999999999999987665 479999999999877554321 11 1111223456
Q ss_pred cceeeeecccc---ccccccccccceEEEEEEccCCCCccceEEEEEEeecCCCCcc----CcccceEEEEEEeeecCCc
Q psy16788 92 ANTVRTFTHQV---TNIDKRFKYLNKFRLHFDVTSLPDTERVQSAELRLSRPMNYEE----DKHEQIQRIIVKDILQPGI 164 (423)
Q Consensus 92 AntVrSF~~~~---~~~~~~~~~~~~~~l~FnlSsIp~~e~V~~AELRLy~~~~~~~----~~~~~~~rV~VYqvl~p~~ 164 (423)
++++++|...+ ..+. .........+.|+++.++..+.+..||||+|+...... ..+.....+.+|++.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (413)
T KOG3900|consen 104 ANSVRSFVSLELSRLSLD-GNSELHFGDLLFDLRSIPSWEALPAAELRLYRRPVPDKLISAEANESLEELSPYDVLSSPL 182 (413)
T ss_pred CCcceeeecccccceecC-CcccccchhhhcccccccchhhccccceeeecccccccccccccCcceeEEEeeeeccccc
Confidence 89999998753 1111 12233456788888889999999999999998776552 1222211188998765431
Q ss_pred CCCCCCceeEEEEEEeeCCCCCCeEEEEcchhHHhhhcCCCCCceeEEEEEecCCccccCCCCCceeeeccccccccccc
Q psy16788 165 KGISKPVLRIVDSVLVDSTSGENGVSLDVLPAVQRWTKSPEHNHGLLIEVTNRDGVLLDRNIRPLVVMKRDQEEYNDLEW 244 (423)
Q Consensus 165 ~g~~~~~~rLLdsr~V~~~~sG~W~sFDVT~aV~~Wl~~~~~N~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (423)
.+.+..++++++.+....+| |++||||.+++.|...+..|+|+++++...+..........+..+.+.........|
T Consensus 183 --~~~~~~~~~~~~~~~~~~~~-W~~fdvt~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (413)
T KOG3900|consen 183 --GRANDARLLSSRLVALRLSG-WIQFDVTSLVKRWALLSLSNLGLELQAEVVDRPLDPLLELSHLLLGRAGTPGALQLL 259 (413)
T ss_pred --cCCCceeeccccceecCCCc-cEEeeHHHHHHHHHhcccccCceeEEEEeccccccccccccceeeeecCCccccchh
Confidence 23456789999999999999 999999999999999999999999999876654321102222333322200000012
Q ss_pred ccccceEEEEecCCCccccc---hhh-hccCCC--CCCCCCCCCcCCCCCCCCceeeeeeeeecccCCchhhhhhhhhcc
Q psy16788 245 TSLEPILFLYSDDGRNKQKS---LED-LLKRPR--RTPNDNAPRKHKKNTYSICKRHPLYVDFADVGWNDWIVENIRKIL 318 (423)
Q Consensus 245 ~~~~p~L~~~~~~~~~~~~~---~~~-~~~R~r--R~~~~~~~~~~~~~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~ 318 (423)
....|.......+....... .+. ...+.+ +.................|||++|||||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ccr~~lyV~F----------------- 322 (413)
T KOG3900|consen 260 LSAKPPASEKDPDLELSTLPSRRRELRLRPRQRHDRRRRRARRGRNCEGARNRCCRRPLYVDF----------------- 322 (413)
T ss_pred hhhccccccccccccccccccccccccccccccccchhccccccccCCCCCCceeccceEeeh-----------------
Confidence 11111111111111000000 000 000000 0000000112233345689999999999
Q ss_pred cccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEE
Q psy16788 319 IPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLY 398 (423)
Q Consensus 319 ~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~ 398 (423)
++|||+||||||+||+||||+|+||||++. +++||||+||+|+|.++|..+|+||||||+|++|+|||
T Consensus 323 -----------~~lGW~dWIIaP~gy~A~yC~G~C~~p~~~-~~~tnHa~vq~l~~~~~p~~~p~pCCvPtklsplsvLy 390 (413)
T KOG3900|consen 323 -----------RDLGWDDWIIAPKGYDANYCSGTCPFPLAD-HAATNHAIVQTLVHAVNPEPVPKPCCVPTKLSPLSVLY 390 (413)
T ss_pred -----------hhcCCcceEeCCCcccCceecCcCCCchhh-cCCcchHHHHHHHHhhCCCCCCCCccccCccCceEEEE
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCeEEeceecc
Q psy16788 399 LDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 399 ~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
+|++++|++++|+||+|++|||+
T Consensus 391 ~d~~~~vv~k~y~nMvV~~CgC~ 413 (413)
T KOG3900|consen 391 FDDNGNVVLKTYPNMVVESCGCR 413 (413)
T ss_pred EeCCCcEEEEEecCcEEEecccC
Confidence 99999999999999999999997
No 2
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=100.00 E-value=4.9e-40 Score=276.13 Aligned_cols=102 Identities=62% Similarity=1.308 Sum_probs=99.6
Q ss_pred ceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHHHHH
Q psy16788 292 CKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQT 371 (423)
Q Consensus 292 c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~ 371 (423)
|||++||||| +||||++|||||+||+||||.|.|++++..+++++|||++|+
T Consensus 1 Ccr~~l~VdF----------------------------~~iGW~~wIiaP~~y~a~yC~G~C~~~~~~~~~~~~Ha~i~~ 52 (102)
T smart00204 1 CRRRQLYVDF----------------------------KDLGWDDWIIAPKGYNAYYCEGECPFPLSTSLNATNHAIVQT 52 (102)
T ss_pred CceeEEEEEH----------------------------hhcCCcceEEcCCceeeeEEeeeCCCCcccccCCcchhhhhh
Confidence 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 372 LMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 372 ~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
+++..++..+++|||+|++|++|+|||+|++|++++++|+||+|++|||+
T Consensus 53 ~~~~~~~~~~~~pCC~P~~~~~l~~ly~~~~~~i~~~~~~~Mvv~~CgC~ 102 (102)
T smart00204 53 LVHLLGPNPVPKPCCVPTKLSPLSMLYYDDDGNVVLRNYPNMVVEECGCR 102 (102)
T ss_pred hHHhcCCCCCCCCCccCceEecEEEEEEeCCCcEEEEEcCCCEEeeeeeC
Confidence 99999988899999999999999999999999999999999999999997
No 3
>PF00019 TGF_beta: Transforming growth factor beta like domain; InterPro: IPR001839 Transforming growth factor-beta (TGF-beta) is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. TGF-beta-1 is a peptide of 112 amino acid residues derived by proteolytic cleavage from the C-terminal of a precursor protein []. A number of proteins are known to be related to TGF-beta-1 [, ]. Proteins from the TGF-beta family are only active as homo- or heterodimer; the two chains being linked by a single disulphide bond. From X-ray studies of TGF-beta-2 [], it is known that all the other cysteines are involved in intrachain disulphide bonds. There are four disulphide bonds in the TGF-beta's and in inhibin beta chains, while the other members of this family lack the first bond. The regulatory cytokine TGFbeta exerts tumour-suppressive effects, but also modulates cell invasion and immune regulation []. Misregulation of the TGF-beta signalling pathway can result in tumour development. ; GO: 0008083 growth factor activity; PDB: 2QCQ_B 2QCW_B 2R53_A 2R52_A 1M4U_L 1BMP_A 1LX5_A 1LXI_A 3FUB_B 2V5E_B ....
Probab=100.00 E-value=1.6e-35 Score=250.15 Aligned_cols=104 Identities=57% Similarity=1.188 Sum_probs=99.6
Q ss_pred CCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHHH
Q psy16788 290 SICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIV 369 (423)
Q Consensus 290 ~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~ 369 (423)
..||++++|||| +||||++|||+|++|+|+||.|.|+++...+.+.++||++
T Consensus 2 ~~Cc~~~~~v~F----------------------------~~lGw~~wIi~P~~~~~~~C~G~C~~~~~~~~~~~~ha~~ 53 (105)
T PF00019_consen 2 KRCCRRSLYVNF----------------------------KDLGWDDWIIAPEGYNANYCSGSCPFPLSNHNNHSNHAIL 53 (105)
T ss_dssp SBSEEEEEEEEC----------------------------TCTTSTTTEEESSEEEEEEEESBSCSSSSCGCHHHHHHHH
T ss_pred CcceeEEEEEEh----------------------------hhcCCceeEeccCccccccccceecccccccccccccccc
Confidence 579999999999 9999999999999999999999999999988889999999
Q ss_pred HHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 370 QTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 370 ~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
+++++..+|..+++|||+|++|++|+|||+|+++++++++|+||+|++|||+
T Consensus 54 ~~~~~~~~~~~~~~pCC~P~~~~~l~il~~~~~~~i~~~~~~~m~v~~CgC~ 105 (105)
T PF00019_consen 54 QSLMHSLNPRSVPQPCCVPTKYSPLSILYLDEDGNIVLKTLPNMIVKECGCS 105 (105)
T ss_dssp HHHHHHHSTTTSTS-EEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEEEE
T ss_pred cccccccccccccCCcEeeeeeceEEEEEEECCCcEEEEEeCCEEecccccC
Confidence 9999999988899999999999999999999999999999999999999996
No 4
>PHA02913 TGF-beta-like protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=261.49 Aligned_cols=111 Identities=26% Similarity=0.536 Sum_probs=92.0
Q ss_pred hccCCCCCCCCCCCCcCCCCCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeee
Q psy16788 268 LLKRPRRTPNDNAPRKHKKNTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAF 347 (423)
Q Consensus 268 ~~~R~rR~~~~~~~~~~~~~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~ 347 (423)
++.|.||...+ .++.|||+++|||| |+|||| +|||||+||+||
T Consensus 62 ~l~R~kr~~~~---------~~~~CcR~~lyVDF---------------------------~~dIGW-dWIIAPkgY~Ay 104 (172)
T PHA02913 62 LLPRHKMDFCD---------IDAICCIRDFNIDF---------------------------KADMGM-KWILKPEGTHAN 104 (172)
T ss_pred ccccccccCCC---------CCCCceeEEEEech---------------------------hhccCc-ceEecCCCeeee
Confidence 45677776542 57899999999999 358999 799999999999
Q ss_pred eecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceec
Q psy16788 348 VCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420 (423)
Q Consensus 348 ~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c 420 (423)
||.|+||++.. +.++|+.. +++....|..+++|||+||+|++|+|||+| +++|++++|+||+|++|||
T Consensus 105 yC~G~Cp~p~~---~~~~~~~~-~ll~~~~p~~~~~pCCvPtklspLSmLY~d-~~nV~~k~~~nMvVeeCGC 172 (172)
T PHA02913 105 LCIGICSISNH---KKINLMYG-TAFKHHMPDNTIPFCCAPIKMKNFIIAYKE-GRKIKTDNIKNFKILECAC 172 (172)
T ss_pred EEeeeCCCCcc---hhhHHHHH-HHHHhcCCCCCCCCCccccccccEEEEEEC-CCEEEEeECCCcEEecccC
Confidence 99999999733 23455543 445556687789999999999999999997 4589999999999999999
No 5
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=99.98 E-value=3.9e-32 Score=258.19 Aligned_cols=229 Identities=30% Similarity=0.441 Sum_probs=129.3
Q ss_pred cCcCCcchhhhhHHHHHHHHHHHHhhcCCCCCCCC-CCCCCCCChHHHHHHHhhh-cCC-CCCCCCCCCCccccccceee
Q psy16788 20 STTSAEDSVQLDKKALQQVESNLLSLFGLNRRPRP-NRKNVRIPKAMLDLYKLQT-GQD-VDTSMLPLPGRHTRSANTVR 96 (423)
Q Consensus 20 ~tcs~~d~~~~~~~~le~ie~~IL~~LGL~~rP~p-~~~~~~vP~~MldLY~~~~-~~~-~~~~~~~~~~~~~~~AntVr 96 (423)
+.|++...+..++.+++.+|++||++|||+++|++ ...+..+|+||++||+.+. ... ......++.......+||||
T Consensus 7 ~~~~~~~~~~~~~~~~e~ik~~iL~~Lgl~~~P~~~~~~~~~~P~~ml~LY~~~~~~~~~~~~~~~~~~~~~~~~~~tVr 86 (238)
T PF00688_consen 7 SCCSCLLREELRQHRLEAIKQQILDKLGLSERPNPPQSPRPSVPQYMLDLYRRLSQADHSGASEDFCESSESPDRANTVR 86 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SS---TTSS--S---HHHHHHHHHHH-S--EEE--------CCCSS-EEEE
T ss_pred CCccchhhhhhHHHHHHHHHHHHHHHcCCCCCCCccccCcccchhhHHHHHHHhhcccccccccccccccccccccccee
Confidence 34566677889999999999999999999999998 2223789999999999986 222 22222223333445599999
Q ss_pred eeccccccccccccccceEEEEEEccCCCCccceEEEEEEeecCCCCccCcccceEEEEEEeeecCCcCCCCCCceeEEE
Q psy16788 97 TFTHQVTNIDKRFKYLNKFRLHFDVTSLPDTERVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIKGISKPVLRIVD 176 (423)
Q Consensus 97 SF~~~~~~~~~~~~~~~~~~l~FnlSsIp~~e~V~~AELRLy~~~~~~~~~~~~~~rV~VYqvl~p~~~g~~~~~~rLLd 176 (423)
+|.+++...........+..|+||+|+++.++.|.+||||||+...... .....++|.||++..+... ......++|+
T Consensus 87 sf~~~~~~~~~~~~~~~~~~~~F~ls~~~~~~~v~~AeLrl~~~~~~~~-~~~~~~~v~v~~~~~~~~~-~~~~~~~~l~ 164 (238)
T PF00688_consen 87 SFAEKGSDSPSSSSSSNRWHLYFDLSSIPSSETVSSAELRLYKQPPSNS-SSPRTVRVSVYQVLQPGRR-NGSQSKRLLD 164 (238)
T ss_dssp EEE---SSTTTT---TTEEEEEE-HHHHSSTTT--EEEEEEEB--------TT--EEEEEEEE--------SSS-EEEEE
T ss_pred eccccccccccccCCCceeEEEEecccccccccceEEEEEEEeeccccc-ccccccccccccccccccc-ccccceeeee
Confidence 9998762221123356789999999999999999999999999875421 2335799999999776532 2345689999
Q ss_pred EEEeeCCCCCCeEEEEcchhHHhhhcCCCCCceeEEEEEecCCccccCCCCCceeeecccccccccccccccceEEEE
Q psy16788 177 SVLVDSTSGENGVSLDVLPAVQRWTKSPEHNHGLLIEVTNRDGVLLDRNIRPLVVMKRDQEEYNDLEWTSLEPILFLY 254 (423)
Q Consensus 177 sr~V~~~~sG~W~sFDVT~aV~~Wl~~~~~N~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~ 254 (423)
++.|....+| |++||||++|++|+.++..|+||+|+|....|........ .........-...|..++||||+|
T Consensus 165 s~~v~~~~~g-W~~~dvt~~v~~W~~~~~~n~gl~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~PfLVvf 238 (238)
T PF00688_consen 165 SRTVDPSDSG-WVSFDVTSAVRRWLRNPEKNLGLELEVEDSNGRSLAVHSS---GFPGDRHQRLKDTDESKRPFLVVF 238 (238)
T ss_dssp EEEE---S---EEEEE-HHHHHHHHH---S-EEEEEEEEEEETTEEEEEE-------------SB--SSSS-SEEEEE
T ss_pred eeeeccccCC-ceeEhHHHHHHHHHhCCCCCccEEEEEEECCCCccCcccc---ccccccccccccCCCCCCCEEEeC
Confidence 9999998899 9999999999999999999999999998766653211000 000000000011478999999998
No 6
>PF06848 Disaggr_repeat: Disaggregatase related repeat; InterPro: IPR010671 This entry describes several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins. Members of this family are also found in single copies in several hypothetical proteins.
Probab=97.76 E-value=0.00033 Score=63.65 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=71.8
Q ss_pred ceEEEEEEccCCCCccceEEEEEEeecCCCCccCcccceEEEEEEeeecCCcC------------------CCCCCceeE
Q psy16788 113 NKFRLHFDVTSLPDTERVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIK------------------GISKPVLRI 174 (423)
Q Consensus 113 ~~~~l~FnlSsIp~~e~V~~AELRLy~~~~~~~~~~~~~~rV~VYqvl~p~~~------------------g~~~~~~rL 174 (423)
.+-.+.||||++++..+|.+|.|-||...+... .......|+||+....-.. |.=......
T Consensus 30 yRdll~FDLS~~~~~~~I~sAtLsLYwyyp~g~-~r~~dtviEvYrpa~sW~~~~vTWN~~~~~v~W~naGGDwyD~~gv 108 (182)
T PF06848_consen 30 YRDLLWFDLSEYPENAEIDSATLSLYWYYPAGT-SRPEDTVIEVYRPASSWNESYVTWNKRDKGVAWTNAGGDWYDKNGV 108 (182)
T ss_pred eeeEEEEeccCCCCCCeEeEEEEEEEEecCCCc-CCCCCeEEEEEccccccCcccccccccCCCCcccccCCcchhccCc
Confidence 466899999999999999999999996554321 1234577999987542110 100000001
Q ss_pred ------EEEEEee---CCCCCCeEEEEcchhHHhhhcCCCCCceeEEEEEecCCc
Q psy16788 175 ------VDSVLVD---STSGENGVSLDVLPAVQRWTKSPEHNHGLLIEVTNRDGV 220 (423)
Q Consensus 175 ------Ldsr~V~---~~~sG~W~sFDVT~aV~~Wl~~~~~N~Gl~i~~~~~~~~ 220 (423)
-.+-++. +.... |.++|||+.|+.|+....+|.||+|.....+..
T Consensus 109 lqg~tpyat~t~~~s~lpdn~-y~eldvTeLV~eyvsg~yeNtGfLIK~r~E~~~ 162 (182)
T PF06848_consen 109 LQGSTPYATITIKGSNLPDNR-YYELDVTELVKEYVSGKYENTGFLIKARTENNN 162 (182)
T ss_pred cccCCceEEEEecCCCCCCCc-eEEccHHHHHHHHhcCCccCceEEEEEecCCCc
Confidence 1122222 22455 999999999999999999999999999776444
No 7
>smart00041 CT C-terminal cystine knot-like domain (CTCK). The structures of transforming growth factor-beta (TGFbeta), nerve growth factor (NGF), platelet-derived growth factor (PDGF) and gonadotropin all form 2 highly twisted antiparallel pairs of beta-strands and contain three disulphide bonds. The domain is non-globular and little is conserved among these presumed homologues except for their cysteine residues. CT domains are predicted to form homodimers.
Probab=94.67 E-value=0.071 Score=42.87 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=44.4
Q ss_pred eeeeeecccCCC-CCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceeccC
Q psy16788 344 YDAFVCKGDCPF-PLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCRY 422 (423)
Q Consensus 344 ~~~~~c~g~c~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~~ 422 (423)
+...+|.|.|.- ... +.+ ++. ..-.||.|+++....+-+.=+||+.+.++| |.+++|+|..
T Consensus 18 v~~~~C~G~C~s~~~~----~~~-----------~~~-~~c~CC~p~~~~~~~v~l~C~dg~~~~~~v--~~i~~C~C~~ 79 (82)
T smart00041 18 VKNAFCEGKCGSASSY----SIQ-----------DVQ-HSCSCCQPHKTKTRQVRLRCPDGSTVKKTV--MHIEECGCEP 79 (82)
T ss_pred EEcCcEEeECCCeeEc----Ccc-----------ccc-cCCCccCCceeEEEEEEEECCCCCEEEEEE--EEEEeccccc
Confidence 688999999952 211 111 111 125799999999999888778888766665 4999999986
Q ss_pred C
Q psy16788 423 N 423 (423)
Q Consensus 423 ~ 423 (423)
+
T Consensus 80 ~ 80 (82)
T smart00041 80 N 80 (82)
T ss_pred C
Confidence 4
No 8
>PF00007 Cys_knot: Cystine-knot domain; InterPro: IPR006208 This domain is found at the C-terminal of glycoprotein hormones and various extracellular proteins. It is believed to be involved in disulphide-linked dimerisation. ; PDB: 1QFW_B 1HRP_B 1HCN_B 1XWD_B 1FL7_B.
Probab=66.09 E-value=6.6 Score=32.83 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=37.2
Q ss_pred CceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCC--CCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEecee
Q psy16788 342 PGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPE--TVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCG 419 (423)
Q Consensus 342 ~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~ 419 (423)
..++..+|.|.|.---. ....|. ....-||.|.......++.-=++|.....+|+ ++.+|.
T Consensus 22 ~~v~~~~C~G~C~s~~~---------------~~~~~~~~~~~~~Cc~~~~~~~~~v~~~C~~G~~~~~~y~--~a~sC~ 84 (105)
T PF00007_consen 22 KTVNTTYCSGYCESSEP---------------YSKDPRKFQSQCVCCYPERTYETVVLLGCPDGVDPTFTYP--VATSCS 84 (105)
T ss_dssp EEEEEEEEEEEEEEE-----------------SCTTTTT----EEEEEEEEEEEEEEETTBTTCS-EEEEEE--EEEEEE
T ss_pred eEEEEEEEEEEecCCeE---------------ecccCCcCcccCcCCCcceEEEEEECCCCccCCcceEEee--Eeeeee
Confidence 45699999999983210 001111 12345888877766665543356765555665 889999
Q ss_pred cc
Q psy16788 420 CR 421 (423)
Q Consensus 420 c~ 421 (423)
|.
T Consensus 85 C~ 86 (105)
T PF00007_consen 85 CS 86 (105)
T ss_dssp EE
T ss_pred CC
Confidence 96
No 9
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=64.43 E-value=25 Score=30.38 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=40.7
Q ss_pred CCceeeeeecccCCCC-CcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCC--cEEEEEcCCeEEec
Q psy16788 341 PPGYDAFVCKGDCPFP-LAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDN--KVVLKTYQDMAVTG 417 (423)
Q Consensus 341 p~~~~~~~c~g~c~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~--~~~~~~~~~m~~~~ 417 (423)
+.....++|-|.|-.- .+...... .. .++ ...-.||.|++...+.+--.=.++ ....+++ |+|++
T Consensus 46 s~~I~N~~C~GqC~S~~iP~~~~~~-~~--------~~~-~~~C~~C~P~~~~~~~V~L~C~~~~~~~~~k~v--~~v~~ 113 (121)
T PF03045_consen 46 SVTIQNNFCFGQCSSFYIPSSVPSD-PG--------SQP-FQSCSCCQPSRFRWVTVTLRCPGGSPPFRVKRV--QIVEE 113 (121)
T ss_pred EEEEEeeeeEEEcceEEeeCCcccc-cc--------ccc-CcccCccCCCeeEEEEEEEECcCCCCCcceEEE--EEeee
Confidence 4455889999999731 11110000 00 011 245568999999987775543333 2224555 69999
Q ss_pred eeccC
Q psy16788 418 CGCRY 422 (423)
Q Consensus 418 c~c~~ 422 (423)
|.|.-
T Consensus 114 C~C~~ 118 (121)
T PF03045_consen 114 CSCSS 118 (121)
T ss_pred cccCc
Confidence 99963
No 10
>KOG3900|consensus
Probab=50.67 E-value=5.2 Score=41.65 Aligned_cols=22 Identities=36% Similarity=0.990 Sum_probs=15.3
Q ss_pred CcCCCCCCCCceeeeeeeeecccCCchhhhh
Q psy16788 282 RKHKKNTYSICKRHPLYVDFADVGWNDWIVE 312 (423)
Q Consensus 282 ~~~~~~~~~~c~~~~~~v~f~~~~~~~~~~~ 312 (423)
+|++..-+- -+=++ ||+|||++
T Consensus 312 ~Ccr~~lyV------~F~~l---GW~dWIIa 333 (413)
T KOG3900|consen 312 RCCRRPLYV------DFRDL---GWDDWIIA 333 (413)
T ss_pred ceeccceEe------ehhhc---CCcceEeC
Confidence 466655554 45568 99999985
No 11
>PHA02913 TGF-beta-like protein; Provisional
Probab=48.12 E-value=6 Score=36.41 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.3
Q ss_pred ee-eeecccCCchhhhh
Q psy16788 297 LY-VDFADVGWNDWIVE 312 (423)
Q Consensus 297 ~~-v~f~~~~~~~~~~~ 312 (423)
-| -|+ || |||++
T Consensus 85 DF~~dI---GW-dWIIA 97 (172)
T PHA02913 85 DFKADM---GM-KWILK 97 (172)
T ss_pred chhhcc---Cc-ceEec
Confidence 45 677 99 79986
No 12
>cd00135 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family domain; PDGF is a potent activator for cells of mesenchymal origin; PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer; VEGF is a potent mitogen in embryonic and somatic angiogenesis with a unique specificity for vascular endothelial cells; VEGF forms homodimers and exists in 4 different isoforms; overall, the VEGF monomer resembles that of PDGF, but its N-terminal segment is helical rather than extended; the cysteine knot motif is a common feature of this domain
Probab=46.77 E-value=37 Score=27.57 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=28.7
Q ss_pred ceeecCCceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEE
Q psy16788 336 DWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYL 399 (423)
Q Consensus 336 ~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~ 399 (423)
+.+..|+=.....|.|=|.-. . -=|+||+.+.+.|-.+
T Consensus 21 ~~~y~P~Cv~v~RCgGCC~~~---~-----------------------~~C~pt~t~~v~~~v~ 58 (86)
T cd00135 21 NTIFKPPCVEVKRCGGCCNDE---S-----------------------LECVPTETSNVTMQVL 58 (86)
T ss_pred CCEEECCeEEEccccCCCCCC---C-----------------------CEEECCEEEEEEEEEE
Confidence 468889999999999999521 0 0199999988776554
No 13
>PF02512 UK: Virulence determinant
Probab=44.62 E-value=8.7 Score=30.73 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=10.5
Q ss_pred CCCcccccccccE
Q psy16788 382 PKACCVPTALSAI 394 (423)
Q Consensus 382 ~~~cc~p~~~~~~ 394 (423)
.-|||||.++.+-
T Consensus 64 dvpcccprkmtsa 76 (96)
T PF02512_consen 64 DVPCCCPRKMTSA 76 (96)
T ss_pred CCCccCCcccccc
Confidence 4689999998764
No 14
>smart00141 PDGF Platelet-derived and vascular endothelial growth factors (PDGF, VEGF) family. Platelet-derived growth factor is a potent activator for cells of mesenchymal origin. PDGF-A and PDGF-B form AA and BB homodimers and an AB heterodimer. Members of the VEGF family are homologues of PDGF.
Probab=43.41 E-value=56 Score=26.43 Aligned_cols=59 Identities=25% Similarity=0.492 Sum_probs=37.8
Q ss_pred ceeecCCceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEE
Q psy16788 336 DWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAV 415 (423)
Q Consensus 336 ~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~ 415 (423)
+.|..|+=-....|+|=|.-.. -=|+||+-..+.|-.+.-.-. .-+++..|.+
T Consensus 21 ~~~y~P~Cv~v~RCgGCCn~e~--------------------------l~C~pt~t~~v~~~v~~~~~~-~~~~~~~v~~ 73 (83)
T smart00141 21 NFLFKPPCVTVQRCGGCCNDEG--------------------------LECVPTETHNVTMQLLEIVRP-KSQGLVEVSF 73 (83)
T ss_pred CcEEecCcEEeceecCCCCCCC--------------------------CEEEccEEEEEEEEEEEEeCC-CCCcEEEEEe
Confidence 5688899999999999995321 119999999877766532110 0012344444
Q ss_pred ---eceecc
Q psy16788 416 ---TGCGCR 421 (423)
Q Consensus 416 ---~~c~c~ 421 (423)
++|.|+
T Consensus 74 ~~H~~C~C~ 82 (83)
T smart00141 74 EEHTKCECR 82 (83)
T ss_pred cccceeeee
Confidence 568886
No 15
>KOG3936|consensus
Probab=40.75 E-value=11 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.7
Q ss_pred chhhhhhhhhcccccccccccccccCC
Q psy16788 307 NDWIVENIRKILIPYRHPLYVDFADVG 333 (423)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (423)
+||-..-|+.-.|||+||+|=+..-+.
T Consensus 37 ~dlhEn~~~e~~IPfr~~~indd~~lk 63 (100)
T KOG3936|consen 37 DDLHENEENEEHIPFRHNHINDDEMLK 63 (100)
T ss_pred HHHHHhhhhhhhcCccCCCCChHHHHH
Confidence 789999999999999999987655443
No 16
>smart00067 GHA Glycoprotein hormone alpha chain homologues. Also called gonadotropins. Glycoprotein hormones consist of two glycosylated chains (alpha and beta) of similar topology.
Probab=35.04 E-value=55 Score=26.32 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=28.3
Q ss_pred CceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEE
Q psy16788 342 PGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISML 397 (423)
Q Consensus 342 ~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~ 397 (423)
+|-..|.|.|-| |..+ .+|..-..++++.-.|- +....|||.....-+.++
T Consensus 16 ~~~PiyQC~GCC-FSrA---YPTPlrskktM~vpKNI-TSEAtCCVAk~~~~v~v~ 66 (87)
T smart00067 16 PGAPIYQCMGCC-FSRA---YPTPLRSKKTMLVPKNI-TSEATCCVAKEFYRVTVM 66 (87)
T ss_pred CCCceeEeccee-cccc---cCCchhhhhccccCccc-cCceeEEEecccEEEEEe
Confidence 355689999977 4322 24444444444422221 135579998876665544
No 17
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=32.62 E-value=56 Score=26.09 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=19.4
Q ss_pred HHHhhcCCCCCCCCCCCCCCCChHHHHHHHhhhcCC
Q psy16788 41 NLLSLFGLNRRPRPNRKNVRIPKAMLDLYKLQTGQD 76 (423)
Q Consensus 41 ~IL~~LGL~~rP~p~~~~~~vP~~MldLY~~~~~~~ 76 (423)
.|-.-+.|...| +|..|++||+..++.+
T Consensus 8 AI~~GiDlDGsp--------IP~~~L~LY~~VM~lE 35 (84)
T PF13319_consen 8 AIAAGIDLDGSP--------IPPAMLELYNEVMDLE 35 (84)
T ss_pred HHHhCcCCCCCc--------CCHHHHHHHHHHHHHH
Confidence 344555555543 7899999999987654
No 18
>PF08137 DVL: DVL family; InterPro: IPR012552 This family consists of the DVL family of proteins. In a gain-of-function genetic screen for genes that influence fruit development in Arabidopsis, DEVIL (DVL) gene was identified. DVL is a small protein and over expression of the protein results in pleiotropic phenotypes featured by shortened stature, rounder rosette leaves, clustered inflorescences, shortened pedicles, and siliques with pronged tips. DVL family is a novel class of small polypeptides and the over expression phenotypes suggest that these polypeptides may have a role in plant development [].
Probab=20.64 E-value=25 Score=20.56 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=6.0
Q ss_pred eehhHHHH
Q psy16788 2 RCLLMVVT 9 (423)
Q Consensus 2 ~~~~~~~~ 9 (423)
+|++||+|
T Consensus 12 rCv~mLlc 19 (19)
T PF08137_consen 12 RCVVMLLC 19 (19)
T ss_pred HhHHHhcC
Confidence 68888764
Done!