Query psy16788
Match_columns 423
No_of_seqs 209 out of 1052
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:06:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjr_A Transforming growth fac 100.0 9.4E-75 3.2E-79 583.6 23.3 348 17-421 1-363 (363)
2 3evs_B Growth/differentiation 100.0 7.7E-45 2.6E-49 310.9 9.7 107 287-421 11-117 (117)
3 2h62_A BMP-2, BMP-2A, bone mor 100.0 1.7E-44 6E-49 307.4 8.3 105 288-421 10-114 (114)
4 1zkz_A Growth/differentiation 100.0 9.4E-44 3.2E-48 301.1 11.2 105 289-421 5-110 (110)
5 2r52_A BMP-6, bone morphogenet 100.0 1.8E-43 6E-48 311.9 10.5 106 288-421 38-143 (143)
6 1lxi_A Bone morphogenetic prot 100.0 3.2E-43 1.1E-47 309.1 8.9 106 288-421 34-139 (139)
7 2qcq_A Bone morphogenetic prot 100.0 8.4E-43 2.9E-47 295.3 10.4 105 289-421 5-110 (110)
8 2arp_A Inhibin beta A chain; c 100.0 7.9E-41 2.7E-45 286.0 7.3 105 288-421 7-116 (116)
9 2tgi_A Transforming growth fac 100.0 5.9E-40 2E-44 278.6 8.5 102 287-421 10-112 (112)
10 3hh2_A Growth/differentiation 100.0 3.4E-38 1.2E-42 266.5 9.4 104 283-421 6-109 (109)
11 2ask_A Artemin; glial cell der 100.0 4.1E-32 1.4E-36 229.3 7.4 95 287-421 11-112 (113)
12 1agq_A GDNF, glial cell-derive 100.0 3.4E-31 1.2E-35 228.5 8.3 96 286-421 36-135 (135)
13 2k8p_A Sclerostin; WNT signall 83.5 11 0.00037 33.6 10.8 37 383-421 107-144 (189)
14 1zkz_A Growth/differentiation 68.0 1.1 3.9E-05 36.9 0.1 8 305-312 21-28 (110)
15 2arp_A Inhibin beta A chain; c 65.3 1.2 4.1E-05 37.0 -0.2 12 298-312 20-31 (116)
16 2r52_A BMP-6, bone morphogenet 65.2 1.5 5E-05 38.0 0.3 13 297-312 50-62 (143)
17 2h62_A BMP-2, BMP-2A, bone mor 64.0 1.3 4.5E-05 36.7 -0.2 13 297-312 22-34 (114)
18 2qcq_A Bone morphogenetic prot 63.3 1.6 5.4E-05 36.0 0.1 8 305-312 21-28 (110)
19 1lxi_A Bone morphogenetic prot 61.7 1.5 5.2E-05 37.6 -0.2 13 297-312 46-58 (139)
20 3evs_B Growth/differentiation 60.6 1.8 6.2E-05 36.0 0.0 13 297-312 24-36 (117)
21 2c7w_A Vascular endothelial gr 36.8 1.2E+02 0.0041 24.1 7.3 38 336-399 35-72 (99)
22 1fzv_A PLGF-1, placenta growth 23.0 2.5E+02 0.0084 23.5 7.2 58 289-399 32-90 (132)
23 3mjk_A Platelet-derived growth 22.8 1.6E+02 0.0056 25.8 6.2 40 288-354 72-114 (169)
24 1e8p_A Endoglucanase, dockerin 20.2 39 0.0013 23.3 1.3 25 382-408 9-33 (46)
No 1
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
Probab=100.00 E-value=9.4e-75 Score=583.57 Aligned_cols=348 Identities=24% Similarity=0.353 Sum_probs=253.4
Q ss_pred ccccCcCCcchhhhhHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCCChHHHHHHHhhhcCCCCCCCCCC-CCccccccce
Q psy16788 17 ITISTTSAEDSVQLDKKALQQVESNLLSLFGLNRRPRPN-RKNVRIPKAMLDLYKLQTGQDVDTSMLPL-PGRHTRSANT 94 (423)
Q Consensus 17 ~~~~tcs~~d~~~~~~~~le~ie~~IL~~LGL~~rP~p~-~~~~~vP~~MldLY~~~~~~~~~~~~~~~-~~~~~~~Ant 94 (423)
++++||++.|++.+++++|++|+++||++|||+++|+|+ ..+..||++|++||+++.+...+...... .....+.|+.
T Consensus 1 ~~~~~~~~~d~~~~k~~~ieai~~~iLsklgL~~~P~~~~~~~~~vP~~ml~LYnst~~l~~~~~~~~~~~~e~~y~ake 80 (363)
T 3rjr_A 1 GPLSTSKTIDMELVKRKRIEAIRGQILSKLRLASPPSQGDVPPGPLPEAVLALYNSTRDRVAGESVEPEPEPEADYYAKE 80 (363)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCTTSSCCSCCCHHHHHHHHHHHSCCEEC-------CCCCSSCEE
T ss_pred CCcccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhccccccCcCCcccceecee
Confidence 468999999999999999999999999999999999985 33478999999999998654321110000 0112334555
Q ss_pred eeeecccc---ccccccccccceEEEEEEccCCCC----ccceEEEEEEeecCCCCccCcccceEEEEEEeeecCCcCCC
Q psy16788 95 VRTFTHQV---TNIDKRFKYLNKFRLHFDVTSLPD----TERVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIKGI 167 (423)
Q Consensus 95 VrSF~~~~---~~~~~~~~~~~~~~l~FnlSsIp~----~e~V~~AELRLy~~~~~~~~~~~~~~rV~VYqvl~p~~~g~ 167 (423)
|++|.... +..+......+..+|+||+|+|+. +|.|++||||||+.... ..++|+||+.. +
T Consensus 81 v~~~~~~~~~~e~~~~~~~~~~~~~f~FnlS~ip~~~~~~e~l~~AELRlyk~~~~------~~~rI~vYq~~--~---- 148 (363)
T 3rjr_A 81 VTRVLMVESGNQIYDKFKGTPHSLYMLFNTSELREAVPEPVLLSRAELRLLRLKLK------VEQHVELYQKY--S---- 148 (363)
T ss_dssp EEEEECCCSSTTTTTTTCCCTTEEEEEECHHHHHHHSSSTTTCCEEEEEEEBCCTT------CCEEEEEEEEC--S----
T ss_pred eeeeccccccccccccccCCcceEEEEEECccCcccCCCcceeeeeEEEeEecCCC------ceEEEEEEecC--C----
Confidence 65553211 000111234467899999999975 67799999999987421 35899999842 1
Q ss_pred CCCceeEEEEEEeeCC-CCCCeEEEEcchhHHhhhcCCCCCceeEEEEEecCCccccCCCCCceeeeccc-c-ccccccc
Q psy16788 168 SKPVLRIVDSVLVDST-SGENGVSLDVLPAVQRWTKSPEHNHGLLIEVTNRDGVLLDRNIRPLVVMKRDQ-E-EYNDLEW 244 (423)
Q Consensus 168 ~~~~~rLLdsr~V~~~-~sG~W~sFDVT~aV~~Wl~~~~~N~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 244 (423)
....++||+|+|... .+| |++||||+||++|+.+++.|+||+|+|.+..+. .....++++.+.. . .++...|
T Consensus 149 -~~~~rlLdsr~v~~~~~~g-W~sFDVt~aV~~Wl~~~~~n~GL~v~v~~~~~~---~~~~~~v~~~g~~~~~~~~~~~~ 223 (363)
T 3rjr_A 149 -QDSWRYLSNRLLAPSDSPE-WLSFDVTGVVRQWLTRREAIEGFRLSAHCSCDS---KDNTLHVEINGFNSGRRGDLATI 223 (363)
T ss_dssp -SSCEEEEEEEEECCCSSCC-EEEEECHHHHHHHHHCCCSCEEEEEEECEEEEE---ETTEEEEEECC-------CSBCC
T ss_pred -CCceEEEEEEEecCCCCCC-EEEEECHHHHHHHHhCCCcCcceEEEEeecCCC---CCcccceeeccccccccCccccc
Confidence 235799999999987 788 999999999999999999999999999853211 0111233333322 0 1111112
Q ss_pred -ccccceEEEEecCCCccccchhhh-ccCCCCCCCCCCCCcCCCCCCCCceeeeeeeeecccCCchhhhhhhhhcccccc
Q psy16788 245 -TSLEPILFLYSDDGRNKQKSLEDL-LKRPRRTPNDNAPRKHKKNTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYR 322 (423)
Q Consensus 245 -~~~~p~L~~~~~~~~~~~~~~~~~-~~R~rR~~~~~~~~~~~~~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~ 322 (423)
.+.+||||+|++++... +.. .+|+||+.... ....+....|||+++||||
T Consensus 224 ~~~~~PfLv~~~~~~~~~----~~~~~~r~kr~~~~~---~c~~~~~~~Ccr~~~~VdF--------------------- 275 (363)
T 3rjr_A 224 HGMNRPFLLLMATPLERA----QHLHSSRHRRALDTN---YCFSSTEKNCCVRQLYIDF--------------------- 275 (363)
T ss_dssp SSSSCSEEEEEECCHHHH----HC--------CBCTT---TTTTSCCCSSEEECCEEEH---------------------
T ss_pred cccCCcEEEEEecccccc----ccccccccccccccc---cccccccCCccccceEEEe---------------------
Confidence 57899999999764311 011 13555543311 1122345689999999999
Q ss_pred cccccccc-cCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeC
Q psy16788 323 HPLYVDFA-DVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDE 401 (423)
Q Consensus 323 ~~~~~~~~-~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~ 401 (423)
+ |||| +|||||+||+||||.|.||+|+. ++||||+||+|++..+|+.+|+|||+||+|++|+|||+|+
T Consensus 276 -------~~dlGW-~WIiaP~gy~a~yC~G~C~~~~~---~~t~ha~v~~l~~~~~p~~~~~pCCvPt~l~~ls~ly~~~ 344 (363)
T 3rjr_A 276 -------RKDLGW-KWIHEPKGYHANFCLGPCPYIWS---LDTQYSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVG 344 (363)
T ss_dssp -------HHHHCC-CSEEECSEEECCEEESCCCCTTT---SCSCCHHHHHHTSSCCSSSSSSCCEEECSEEEEEEEEEET
T ss_pred -------ecccCc-ceecCCCcccceEeeeeCCCCcc---CCCchHHHHHHHHhcCCCcCCCCccccccccceEEEEEeC
Confidence 8 9999 79999999999999999999975 5899999999999999998999999999999999999998
Q ss_pred CCcEEEEEcCCeEEeceecc
Q psy16788 402 DNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 402 ~~~~~~~~~~~m~~~~c~c~ 421 (423)
+++ ++++|+||+|++|||.
T Consensus 345 ~~~-~~~~~~~Mvv~~CgCs 363 (363)
T 3rjr_A 345 RKP-KVEQLSNMIVRSCKCS 363 (363)
T ss_dssp TEE-EEEEEEEEEECCEEEC
T ss_pred Cee-EEEEcCCcEEEecccC
Confidence 765 5799999999999995
No 2
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=100.00 E-value=7.7e-45 Score=310.91 Aligned_cols=107 Identities=57% Similarity=1.146 Sum_probs=102.1
Q ss_pred CCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChh
Q psy16788 287 NTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNH 366 (423)
Q Consensus 287 ~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~ 366 (423)
.....|||++||||| +||||+||||||+||+||||.|+||+|+..++|+|||
T Consensus 11 ~~~~~C~r~~l~V~F----------------------------~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnH 62 (117)
T 3evs_B 11 NLKARCSRKALHVNF----------------------------KDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNH 62 (117)
T ss_dssp ---CBSEEECCEEET----------------------------GGGTGGGTEEECSEEECCEEESBCCSSCCGGGCCCHH
T ss_pred CCCCCcEEEEEEEEH----------------------------HHCCCcceeeCCCcccceeeeeECCCCcccccCCchH
Confidence 346789999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 367 AIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|++|+|+++.+|..+++|||+||+|++|+|||+|++++|++++|+||+|++||||
T Consensus 63 a~iq~l~~~~~p~~~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgCr 117 (117)
T 3evs_B 63 AVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR 117 (117)
T ss_dssp HHHHHHHHHHCTTTCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCCCCEeceeeccEEEEEEeCCCCEEEEEcCCeEEeecccC
Confidence 9999999999999899999999999999999999999999999999999999997
No 3
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=100.00 E-value=1.7e-44 Score=307.37 Aligned_cols=105 Identities=81% Similarity=1.464 Sum_probs=101.0
Q ss_pred CCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhH
Q psy16788 288 TYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHA 367 (423)
Q Consensus 288 ~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~ 367 (423)
....|||++||||| +||||++|||||+||+||||.|+||||+..++|+||||
T Consensus 10 ~~~~C~r~~l~VdF----------------------------~dlGW~~WIiaP~gy~a~yC~G~C~~p~~~~~~~tnHa 61 (114)
T 2h62_A 10 LKSSCKRHPLYVDF----------------------------SDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHA 61 (114)
T ss_dssp -CCBSEEECCEEEH----------------------------HHHTCTTTEEECSEEECCEEECBCCSSCCTTSEECHHH
T ss_pred CCCCceeEEEEEEe----------------------------eecCCcccEEcCCceEeEeeeeECCCCcccccCCchHH
Confidence 45789999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 368 IVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 368 ~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|+|+|++..+| .+++|||+||+|++|+|||+|++++|++++|+||+|++|||+
T Consensus 62 ivq~l~~~~~~-~~~~pCCvPt~l~~is~ly~d~~~~v~~~~~~~Mvv~~CgC~ 114 (114)
T 2h62_A 62 IVQTLVNSVNS-KIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 114 (114)
T ss_dssp HHHHHHHHHCT-TSCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHhcCC-CCCCCcccceeeccEEEEEEeCCCCEEEEEcCCeEEecccCC
Confidence 99999999998 499999999999999999999999999999999999999997
No 4
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=301.13 Aligned_cols=105 Identities=52% Similarity=1.016 Sum_probs=102.5
Q ss_pred CCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHH
Q psy16788 289 YSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAI 368 (423)
Q Consensus 289 ~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~ 368 (423)
...|||++||||| +||||++|||||+||+||||.|+||+|+..++|+||||+
T Consensus 5 ~~~C~r~~l~VdF----------------------------~dlGW~~WIiaP~gy~a~yC~G~C~~~~~~~~~~tnHai 56 (110)
T 1zkz_A 5 GSHCQKTSLRVNF----------------------------EDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAI 56 (110)
T ss_dssp CCBSEEEEEEEET----------------------------TTTTCTTTEEECSEEEEEEEESBCCSSCCTTSCCCHHHH
T ss_pred CCCcEEEEEEEEe----------------------------eccCCcceEECCCceEeEEeEeECCCCcccccCCCchHH
Confidence 5789999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEE-EcCCeEEeceecc
Q psy16788 369 VQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLK-TYQDMAVTGCGCR 421 (423)
Q Consensus 369 ~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~-~~~~m~~~~c~c~ 421 (423)
+|+|++..+|..+++|||+||+|++|+|||+|++|+|+++ +|+||+|++|||+
T Consensus 57 vq~l~~~~~~~~~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~~Mvv~~CgC~ 110 (110)
T 1zkz_A 57 VQTLVHLKFPTKVGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110 (110)
T ss_dssp HHHHHHHHSTTTSCCCCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHhcCCCCCCCCcccceeEccEEEEEEeCCCCEEEeeEeCCEEEEecccC
Confidence 9999999999889999999999999999999999999999 9999999999997
No 5
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=311.92 Aligned_cols=106 Identities=56% Similarity=1.187 Sum_probs=102.6
Q ss_pred CCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhH
Q psy16788 288 TYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHA 367 (423)
Q Consensus 288 ~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~ 367 (423)
....|||++||||| +||||+||||||+||+||||.|+||||+..++|+||||
T Consensus 38 ~~~~C~r~~l~VdF----------------------------~dlGW~dWIiaP~gy~A~yC~G~C~~pl~~~~~~tnHa 89 (143)
T 2r52_A 38 LKTACRKHELYVSF----------------------------QDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHA 89 (143)
T ss_dssp -CCBSEEECCEEET----------------------------TTTTCGGGEEECSEEECCEEESBCCSSCCTTTTBCHHH
T ss_pred CCCCceEEEEEEEH----------------------------hHCCCceeEEcCCceeeeeeeeECCCccccccCCCchH
Confidence 45689999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 368 IVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 368 ~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|||+|++..+|..+|+|||+||+|++|+|||+|++|+|++++|+||+|++|||+
T Consensus 90 ivq~l~~~~~p~~~~~pCCvPt~l~~is~Ly~d~~~~v~~k~~~~Mvv~~CgC~ 143 (143)
T 2r52_A 90 IVQTLVHLMNPEYVPKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGCH 143 (143)
T ss_dssp HHHHHHHHTCTTTSCCCCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCcceeeccEEEEEEECCCCEEEEEcCCeEEeeccCC
Confidence 999999999999899999999999999999999999999999999999999997
No 6
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=100.00 E-value=3.2e-43 Score=309.07 Aligned_cols=106 Identities=57% Similarity=1.202 Sum_probs=102.0
Q ss_pred CCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhH
Q psy16788 288 TYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHA 367 (423)
Q Consensus 288 ~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~ 367 (423)
....|||++||||| +||||++|||||+||+||||.|+||||+..++|+||||
T Consensus 34 ~~~~C~r~~l~VdF----------------------------~dlGW~~WIiaP~gy~a~yC~G~C~~pl~~~~~~tnHa 85 (139)
T 1lxi_A 34 QRQACKKHELYVSF----------------------------RDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHA 85 (139)
T ss_dssp --CBSEEECCEEEH----------------------------HHHTCTTTEEECSEEECCEEESBCCSSCCGGGCCCHHH
T ss_pred CCCcceeEEEEEEh----------------------------hhCCCceeEECCCceeeeeeeeECCCCcccccCCCchH
Confidence 45789999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 368 IVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 368 ~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|||+|++.++|..+|+|||+||+|++|+|||+|++|+|++++|+||+|++|||+
T Consensus 86 ivq~l~~~~~p~~~~~pCCvPt~l~~is~ly~d~~~~v~~~~~~~Mvv~~CgC~ 139 (139)
T 1lxi_A 86 IVQTLVHFINPETVPKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGCH 139 (139)
T ss_dssp HHHHHHHHHCTTTCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCcCeeeccEEEEEEeCCCCEEEEEcCCeEEEecccC
Confidence 999999999998899999999999999999999999999999999999999997
No 7
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.4e-43 Score=295.31 Aligned_cols=105 Identities=44% Similarity=1.035 Sum_probs=99.8
Q ss_pred CCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhHH
Q psy16788 289 YSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAI 368 (423)
Q Consensus 289 ~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~ 368 (423)
...|||++||||| +||||++|||||+||+||||.|+||||++.++++||||+
T Consensus 5 ~~~C~r~~l~VdF----------------------------~dlGW~~WIiaP~~y~a~yC~G~C~~pl~~~~~~tnHa~ 56 (110)
T 2qcq_A 5 PRNCARRYLKVDF----------------------------ADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHAT 56 (110)
T ss_dssp CSBSEEECCEEET----------------------------TTTTCTTTEEECSEEECCEEECBCCSSCCGGGCCCHHHH
T ss_pred CCCcEEEEEEEEe----------------------------eccCCcceEECCCceEeEEeEeECCCCcccccCCChhHH
Confidence 5679999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC-CCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 369 VQTLMNSVQ-PETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 369 ~~~~~~~~~-~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
+|+|+++.+ +..+++|||+||+|++|+|||+|++|++++++|+||+|++|||+
T Consensus 57 vq~l~~~~~~~~~~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgC~ 110 (110)
T 2qcq_A 57 IQSIVRAVGVVPGIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCACR 110 (110)
T ss_dssp HHHHHHHTCCSTTCCCCCEEECSEEEEEEEEECTTCCEEEEEEEEEEECCEEEC
T ss_pred HHHHHHhccCCCCCCCCcCCCeeEccEEEEEEeCCCCEEEEEcCCcEEeecccC
Confidence 999999885 23489999999999999999999999999999999999999997
No 8
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=100.00 E-value=7.9e-41 Score=285.97 Aligned_cols=105 Identities=41% Similarity=0.914 Sum_probs=88.9
Q ss_pred CCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChhH
Q psy16788 288 TYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHA 367 (423)
Q Consensus 288 ~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~ 367 (423)
....|+|++||||| +||||++|||||+||+||||.|+||||+..+ |+||||
T Consensus 7 ~~~~C~r~~l~VdF----------------------------~dlGW~~WIiaP~~y~a~yC~G~C~~p~~~~-~~tn~a 57 (116)
T 2arp_A 7 KVNICCKKQFFVSF----------------------------KDIGWNDWIIAPSGYHANYCEGECPSHIAGT-SGSSLS 57 (116)
T ss_dssp --CCSEEECCEEEH----------------------------HHHTCTTTEEECSEEECCEEESCCCC----------CC
T ss_pred CCCCceeEEEEEEh----------------------------hhcCCcccEECCCceEeEEEeeeCCCCcccc-CCcchH
Confidence 45789999999999 9999999999999999999999999999865 999999
Q ss_pred HHHHHHhh-----cCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 368 IVQTLMNS-----VQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 368 ~~~~~~~~-----~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
++|+++.+ .+|..+++|||+||+|++|+|||+|++|++++++|+||+|++|||+
T Consensus 58 ~~~~~i~~~~~~~~~p~~~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgC~ 116 (116)
T 2arp_A 58 FHSTVINHYRMRGHSPFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGCS 116 (116)
T ss_dssp HHHHHHHHTTSTTCSSCCCCCCCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHhhhccccCCCCCCCCccccccCccEEEEEEeCCCCEEEEEcCCeEEeecccC
Confidence 99987654 4577789999999999999999999999999999999999999997
No 9
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP: g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C 1kla_A 1klc_A 1kld_A 3kfd_A
Probab=100.00 E-value=5.9e-40 Score=278.59 Aligned_cols=102 Identities=36% Similarity=0.854 Sum_probs=95.7
Q ss_pred CCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccc-cCCCcceeecCCceeeeeecccCCCCCcCCCCCCh
Q psy16788 287 NTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFA-DVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTN 365 (423)
Q Consensus 287 ~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~ 365 (423)
+....|||++||||| + |||| +|||||+||+||||.|+||||+.. +||
T Consensus 10 ~~~~~C~r~~l~VdF----------------------------~~dlGW-~WIiaP~~y~A~yC~G~C~~p~~~---~tn 57 (112)
T 2tgi_A 10 NVQDNCCLRPLYIDF----------------------------KRDLGW-KWIHEPKGYNANFCAGACPYLWSS---DTQ 57 (112)
T ss_dssp CCCSBSEEECCEEEH----------------------------HHHHCC-TTEEECSEEECCEEECBCCTTSSB---CSH
T ss_pred CCCCCceeEEEEEEh----------------------------hhhcCC-ceEcCcCcEEEEEeeeECcCCccc---cch
Confidence 356789999999999 8 9999 699999999999999999999874 699
Q ss_pred hHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 366 HAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
||++|+|+++.+|..+++|||+||+|++|+|||+|++ ++++++|+||+|++||||
T Consensus 58 Ha~vq~l~~~~~p~~~~~pCCvPt~l~~ls~ly~d~~-~~~~~~~~~Mvv~~CgC~ 112 (112)
T 2tgi_A 58 HSRVLSLYNTINPEASASPCCVSQDLEPLTILYYIGK-TPKIEQLSNMIVKSCKCS 112 (112)
T ss_dssp HHHHHHHHHHHCGGGCCCCCEEECSEEEEEEEEEETT-EEEEEEEEEEEECCEEEC
T ss_pred hhHHHHHHHhcCCCCCCCCceeceeeccEEEEEEeCC-ceEEEEcCCcEEeecccC
Confidence 9999999999999889999999999999999999876 688999999999999997
No 10
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=100.00 E-value=3.4e-38 Score=266.54 Aligned_cols=104 Identities=38% Similarity=0.828 Sum_probs=94.4
Q ss_pred cCCCCCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCC
Q psy16788 283 KHKKNTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLN 362 (423)
Q Consensus 283 ~~~~~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~ 362 (423)
+..+.++..|+|++||||| +|||| ||||||+||+||||.|+||+|+. +
T Consensus 6 C~~~~~~~~C~r~~l~V~F----------------------------~dlGW-dWIiaP~~y~a~yC~G~C~~p~~---~ 53 (109)
T 3hh2_A 6 CDEHSTESRCCRYPLTVDF----------------------------EAFGW-DWIIAPKRYKANYCSGECEFVFL---Q 53 (109)
T ss_dssp CCTTCCCCBSEEECCEEEH----------------------------HHHTC-TTEEECSEEECCEEECBCCTTTT---C
T ss_pred CCCCCCCCCcEEEEEEEeH----------------------------HHcCC-CeEeCCCcccceeecccCCCccc---c
Confidence 3344566889999999999 99999 79999999999999999999975 4
Q ss_pred CChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 363 STNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
.++|+ +|++.++|..+++|||+||+|++|+|||+|++|+|++++|+||+|++|||.
T Consensus 54 ~~~h~---~l~~~~~p~~~~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv~~CgCs 109 (109)
T 3hh2_A 54 KYPHT---HLVHQANPRGSAGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGCS 109 (109)
T ss_dssp CCHHH---HHHHHHCCTTCCCCCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEC
T ss_pred cCchh---hhhhhcCcccCCCceEeeeeeccEEEEEEeCCCCEEEEEcCCeEEeeeEeC
Confidence 57898 478888898899999999999999999999999999999999999999995
No 11
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=99.97 E-value=4.1e-32 Score=229.31 Aligned_cols=95 Identities=23% Similarity=0.486 Sum_probs=83.4
Q ss_pred CCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCChh
Q psy16788 287 NTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNH 366 (423)
Q Consensus 287 ~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~ 366 (423)
.....|++++||||| +||||+ | ++|++|+||||.|+|||+ +|||
T Consensus 11 ~~~~~C~l~~l~V~f----------------------------~dLGw~-~-~ap~~y~a~yC~G~C~~~------~tnH 54 (113)
T 2ask_A 11 AGARGCRLRSQLVPV----------------------------RALGLG-H-RSDELVRFRFCSGSCRRA------RSPH 54 (113)
T ss_dssp --CCBSEEEEEEEEG----------------------------GGGSSS-C-CCCCEEEEEEEECBCGGG------CCHH
T ss_pred CCCCCceeEEEEEEH----------------------------HHcCCC-c-cCcCeeeeeeeeeeCCCC------CCcH
Confidence 346789999999999 999994 6 459999999999999994 6999
Q ss_pred HHH-HHHHhhc--CC----CCCCCCcccccccccEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 367 AIV-QTLMNSV--QP----ETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 367 ~~~-~~~~~~~--~~----~~~~~~cc~p~~~~~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|++ |+|+++. ++ ..+++|||+||+|++|||| | +++++++|+||+|++|||.
T Consensus 55 a~vl~~l~~~~~~~~p~~~~~~~~PCCvPt~~~~iS~L--d--~~v~~k~~~~Mva~~CgC~ 112 (113)
T 2ask_A 55 DLSLASLLGAGALRPPPGSRPVSQPCCRPTRYEAVSFM--D--VNSTWRTVDRLSATACGCL 112 (113)
T ss_dssp HHHHHHHHHHTCSCCCSSSCCCSSCEEEEEEEEEEEEE--C--TTSCEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhccccCcccCCCCCCCCccCceecceEEE--c--CceeeeecCCcEEeecccC
Confidence 987 9999986 33 7799999999999999998 4 4688999999999999994
No 12
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=99.97 E-value=3.4e-31 Score=228.45 Aligned_cols=96 Identities=22% Similarity=0.486 Sum_probs=80.3
Q ss_pred CCCCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCcceeecCCceeeeeecccCCCCCcCCCCCCh
Q psy16788 286 KNTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTN 365 (423)
Q Consensus 286 ~~~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~ 365 (423)
+.....|++++||||| +||||+ | ++|++|+||||.|.|||+ +||
T Consensus 36 ~~~~~~C~l~~L~V~f----------------------------~dLGwg-~-~spe~y~a~yC~G~C~~~------~TN 79 (135)
T 1agq_A 36 RGKNRGCVLTAIHLNV----------------------------TDLGLG-Y-ETKEELIFRYCSGSCEAA------ETM 79 (135)
T ss_dssp ---CTTSEEEEEEEEG----------------------------GGGCSS-C-CCCCEEEEEEEESCCCSC------CSH
T ss_pred CCCCCCceeEEEEEEH----------------------------HHhCCC-c-cCcCeeEeeeeeeeCCCC------Ccc
Confidence 3457899999999999 999996 4 689999999999999994 799
Q ss_pred hHHH-HHHHh--hcCCCCCCCCcccccccc-cEEEEEEeCCCcEEEEEcCCeEEeceecc
Q psy16788 366 HAIV-QTLMN--SVQPETVPKACCVPTALS-AISMLYLDEDNKVVLKTYQDMAVTGCGCR 421 (423)
Q Consensus 366 ~~~~-~~~~~--~~~~~~~~~~cc~p~~~~-~~~~~~~~~~~~~~~~~~~~m~~~~c~c~ 421 (423)
|||| |+|++ +++|+.+|+|||+||+|+ +|||| | +++++++|+||+|++|||.
T Consensus 80 HAivL~~L~~~~~l~p~~vp~PCCvPt~~s~~IS~L--D--~~~v~k~~~~Mva~~CGC~ 135 (135)
T 1agq_A 80 YDKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSFL--D--DSLVYHILRKHSAKRCGCI 135 (135)
T ss_dssp HHHHHHHHHHHC------CCCCCEEEEEECCCEEEE--C--TTSCEEEECSCSEEEEEEC
T ss_pred HHHHHHHHHhhcccCCCCCCCCCccCeecCCCceEE--c--CCcceeecCcceeeccccC
Confidence 9998 99998 458999999999999999 99999 4 4567999999999999994
No 13
>2k8p_A Sclerostin; WNT signalling pathway, bone formation, alternative splicing, glycoprotein, secreted, signaling protein; NMR {Homo sapiens} PDB: 2kd3_A
Probab=83.47 E-value=11 Score=33.59 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=29.2
Q ss_pred CCcccccccccEEEEEEeCCCcE-EEEEcCCeEEeceecc
Q psy16788 383 KACCVPTALSAISMLYLDEDNKV-VLKTYQDMAVTGCGCR 421 (423)
Q Consensus 383 ~~cc~p~~~~~~~~~~~~~~~~~-~~~~~~~m~~~~c~c~ 421 (423)
.-||+|.+..-..+-..=.||+. ...++ -+|.+|+|.
T Consensus 107 ~~cCvp~rsRrrRIqm~C~DGtt~rt~ki--~vV~sCkCk 144 (189)
T 2k8p_A 107 DFRCIPDRYRAQRVQLLCPGGEAPRARKV--RLVASCKCK 144 (189)
T ss_dssp CCCCEECCEEEEEEEEECCTTSCCEEEEE--EEECCEECC
T ss_pred cccccCCceeeEEEEEEcCCCCeeeEEEE--EEEEeeccc
Confidence 46999999998777777788876 54555 499999995
No 14
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=67.96 E-value=1.1 Score=36.85 Aligned_cols=8 Identities=50% Similarity=1.863 Sum_probs=7.4
Q ss_pred CCchhhhh
Q psy16788 305 GWNDWIVE 312 (423)
Q Consensus 305 ~~~~~~~~ 312 (423)
||+|||++
T Consensus 21 GW~~WIia 28 (110)
T 1zkz_A 21 GWDSWIIA 28 (110)
T ss_dssp TCTTTEEE
T ss_pred CCcceEEC
Confidence 99999985
No 15
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=65.26 E-value=1.2 Score=37.01 Aligned_cols=12 Identities=58% Similarity=1.655 Sum_probs=9.3
Q ss_pred eeeecccCCchhhhh
Q psy16788 298 YVDFADVGWNDWIVE 312 (423)
Q Consensus 298 ~v~f~~~~~~~~~~~ 312 (423)
|=|+ ||+|||++
T Consensus 20 F~dl---GW~~WIia 31 (116)
T 2arp_A 20 FKDI---GWNDWIIA 31 (116)
T ss_dssp HHHH---TCTTTEEE
T ss_pred hhhc---CCcccEEC
Confidence 3466 99999985
No 16
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand, chondrogenesis, cleavage on PAIR of basic residues, cytokine, developmental protein; 2.50A {Homo sapiens}
Probab=65.20 E-value=1.5 Score=37.96 Aligned_cols=13 Identities=46% Similarity=1.426 Sum_probs=10.6
Q ss_pred eeeeecccCCchhhhh
Q psy16788 297 LYVDFADVGWNDWIVE 312 (423)
Q Consensus 297 ~~v~f~~~~~~~~~~~ 312 (423)
-|=|+ ||+|||++
T Consensus 50 dF~dl---GW~dWIia 62 (143)
T 2r52_A 50 SFQDL---GWQDWIIA 62 (143)
T ss_dssp ETTTT---TCGGGEEE
T ss_pred EHhHC---CCceeEEc
Confidence 45588 99999985
No 17
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=64.03 E-value=1.3 Score=36.73 Aligned_cols=13 Identities=62% Similarity=1.429 Sum_probs=10.6
Q ss_pred eeeeecccCCchhhhh
Q psy16788 297 LYVDFADVGWNDWIVE 312 (423)
Q Consensus 297 ~~v~f~~~~~~~~~~~ 312 (423)
-|=|+ ||+|||++
T Consensus 22 dF~dl---GW~~WIia 34 (114)
T 2h62_A 22 DFSDV---GWNDWIVA 34 (114)
T ss_dssp EHHHH---TCTTTEEE
T ss_pred Eeeec---CCcccEEc
Confidence 45588 99999985
No 18
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=63.26 E-value=1.6 Score=35.96 Aligned_cols=8 Identities=50% Similarity=1.909 Sum_probs=7.4
Q ss_pred CCchhhhh
Q psy16788 305 GWNDWIVE 312 (423)
Q Consensus 305 ~~~~~~~~ 312 (423)
||+|||++
T Consensus 21 GW~~WIia 28 (110)
T 2qcq_A 21 GWSEWIIS 28 (110)
T ss_dssp TCTTTEEE
T ss_pred CCcceEEC
Confidence 99999985
No 19
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor, hormone-growth factor complex; HET: NAG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L* 2qcw_A 2r53_A
Probab=61.67 E-value=1.5 Score=37.64 Aligned_cols=13 Identities=46% Similarity=1.413 Sum_probs=10.8
Q ss_pred eeeeecccCCchhhhh
Q psy16788 297 LYVDFADVGWNDWIVE 312 (423)
Q Consensus 297 ~~v~f~~~~~~~~~~~ 312 (423)
-|=++ ||+|||++
T Consensus 46 dF~dl---GW~~WIia 58 (139)
T 1lxi_A 46 SFRDL---GWQDWIIA 58 (139)
T ss_dssp EHHHH---TCTTTEEE
T ss_pred EhhhC---CCceeEEC
Confidence 45589 99999985
No 20
>3evs_B Growth/differentiation factor 5; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Homo sapiens} SCOP: g.17.1.0 PDB: 1waq_A 3qb4_A 2bhk_A
Probab=60.64 E-value=1.8 Score=36.02 Aligned_cols=13 Identities=46% Similarity=1.426 Sum_probs=10.7
Q ss_pred eeeeecccCCchhhhh
Q psy16788 297 LYVDFADVGWNDWIVE 312 (423)
Q Consensus 297 ~~v~f~~~~~~~~~~~ 312 (423)
-|-|+ ||+|||++
T Consensus 24 ~F~dl---GW~~WIia 36 (117)
T 3evs_B 24 NFKDM---GWDDWIIA 36 (117)
T ss_dssp ETGGG---TGGGTEEE
T ss_pred EHHHC---CCcceeeC
Confidence 45688 99999985
No 21
>2c7w_A Vascular endothelial growth factor B precursor; angiogenesis, cysteine-knot motif, tyrosine kinase, ischemia, mitogen, glycoprotein; 2.48A {Homo sapiens} PDB: 2xac_A
Probab=36.76 E-value=1.2e+02 Score=24.10 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=28.2
Q ss_pred ceeecCCceeeeeecccCCCCCcCCCCCChhHHHHHHHhhcCCCCCCCCcccccccccEEEEEE
Q psy16788 336 DWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPKACCVPTALSAISMLYL 399 (423)
Q Consensus 336 ~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~ 399 (423)
+-|..|+=-....|+|=|.-. . -=|+||+-..+.|-.+
T Consensus 35 ~~~y~P~Cv~v~RCgGCC~~e---~-----------------------l~C~Pt~t~~v~~~v~ 72 (99)
T 2c7w_A 35 AKQLVPSCVTVQRCGGCCPDD---G-----------------------LECVPTGQHQVRMQIL 72 (99)
T ss_dssp CSEEESSEEEEEEEESBCSSS---S-----------------------CEEEEEEEEEEEEEEE
T ss_pred CceEECCeEEEccccCcCCCC---C-----------------------cEEEccEEEEEEEEEE
Confidence 457889999999999999731 0 0199999996665443
No 22
>1fzv_A PLGF-1, placenta growth factor; cysteine-knot family, angiogenesis, hormone/growth factor complex; 2.00A {Homo sapiens} SCOP: g.17.1.1 PDB: 1rv6_V*
Probab=23.03 E-value=2.5e+02 Score=23.52 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=42.6
Q ss_pred CCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCCCc-ceeecCCceeeeeecccCCCCCcCCCCCChhH
Q psy16788 289 YSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWN-DWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHA 367 (423)
Q Consensus 289 ~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~-~wi~~p~~~~~~~c~g~c~~~~~~~~~~~~~~ 367 (423)
...|+-.+..|+.. .++.-+ +-|..|.=-....|.|=|.-..
T Consensus 32 ~s~C~Pr~~~V~i~---------------------------~E~p~~~~~~y~P~Cv~v~RCgGCC~~e~---------- 74 (132)
T 1fzv_A 32 RSYCRALERLVDVV---------------------------SEYPSEVEHMFSPSCVSLLRCTGCCGDEN---------- 74 (132)
T ss_dssp HHBSEEEEEEEETG---------------------------GGSSSCCCSCEESSEEEEEEEECBCSSTT----------
T ss_pred ccccccccEEEEcc---------------------------hhcCCCCCceEecCcEEeccccccCCCCC----------
Confidence 46698888888882 344332 5688899999999999997421
Q ss_pred HHHHHHhhcCCCCCCCCcccccccccEEEEEE
Q psy16788 368 IVQTLMNSVQPETVPKACCVPTALSAISMLYL 399 (423)
Q Consensus 368 ~~~~~~~~~~~~~~~~~cc~p~~~~~~~~~~~ 399 (423)
-=|+||+-..+.|-.+
T Consensus 75 ----------------l~C~Pt~t~~v~~~v~ 90 (132)
T 1fzv_A 75 ----------------LHCVPVETANVTMQLL 90 (132)
T ss_dssp ----------------EEEEEEEEEEEEEEEE
T ss_pred ----------------cEEecceEEEEEEEEE
Confidence 0199999988887665
No 23
>3mjk_A Platelet-derived growth factor subunit A; cystine-knot, hormone; 2.40A {Homo sapiens}
Probab=22.82 E-value=1.6e+02 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCCceeeeeeeeecccCCchhhhhhhhhcccccccccccccccCC---CcceeecCCceeeeeecccCC
Q psy16788 288 TYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVG---WNDWIVAPPGYDAFVCKGDCP 354 (423)
Q Consensus 288 ~~~~c~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---w~~wi~~p~~~~~~~c~g~c~ 354 (423)
....|+-.+.-|+.+ .+++ =..+|+.|+=-....|.|=|.
T Consensus 72 ~~a~C~PRe~~VeI~---------------------------~E~pd~t~~~f~~~PsCV~V~RCgGCCn 114 (169)
T 3mjk_A 72 VPAVCKTRTVIYEIP---------------------------RSQVDPTSANFLIWPPCVEVKRCTGCCN 114 (169)
T ss_dssp CBCCSEEEEEEEECC---------------------------GGGTCSSCCCCEEESSEEEEEEEECCCS
T ss_pred hccCcccccEEeech---------------------------hhcCCCCCceeEEcCCcEEeccccccCC
Confidence 467899888888883 4442 125788899999999999997
No 24
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=20.19 E-value=39 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCCcccccccccEEEEEEeCCCcEEEE
Q psy16788 382 PKACCVPTALSAISMLYLDEDNKVVLK 408 (423)
Q Consensus 382 ~~~cc~p~~~~~~~~~~~~~~~~~~~~ 408 (423)
.=|||.+.. .-.+.|.|++|+-=+.
T Consensus 9 GY~CC~~~~--~c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 9 GYNCCNNPS--STKVEYTDASGQWGVQ 33 (46)
T ss_dssp TCEECSCGG--GSCEEEEETTEEEEEE
T ss_pred CcCccCCCC--CceEEEEcCCCccccC
Confidence 458997652 2338899999975433
Done!