RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16788
(423 letters)
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin,
cytokine; HET: NAG; 3.05A {Sus scrofa}
Length = 363
Score = 218 bits (555), Expect = 1e-67
Identities = 79/415 (19%), Positives = 127/415 (30%), Gaps = 66/415 (15%)
Query: 18 TISTTSAEDSVQLDKKALQQVESNLLSLFGLNRRPRPNR-KNVRIPKAMLDLYKLQT--- 73
+ST+ D + +K ++ + +LS L P +P+A+L LY
Sbjct: 2 PLSTSKTIDMELVKRKRIEAIRGQILSKLRLASPPSQGDVPPGPLPEAVLALYNSTRDRV 61
Query: 74 -GQDVDTSMLPLPGRHTRSANTVRTFTHQVTNIDKRFKYLNKFRLHFDVT----SLPDTE 128
G+ V+ P + + V DK + + F+ + ++P+
Sbjct: 62 AGESVEPEPEPEADYYAKEVTRVLMVESGNQIYDKFKGTPHSLYMLFNTSELREAVPEPV 121
Query: 129 RVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIKGISKPVLRIVDSVLVDSTSGENG 188
+ AELRL R E Q + + R + + L+ +
Sbjct: 122 LLSRAELRLLRLKLKVE------QHVELYQKYSQ-------DSWRYLSNRLLAPSDSPEW 168
Query: 189 VSLDVLPAVQRWTKSPEHNHGLLIEVT---NRDGVLLDRNIRPLVVMKRDQEEYNDLEWT 245
+S DV V++W E G + + L I +R
Sbjct: 169 LSFDVTGVVRQWLTRREAIEGFRLSAHCSCDSKDNTLHVEINGFNSGRRGDLAT---IHG 225
Query: 246 SLEPILFLYSDDGRNKQKSLEDLLKRPRRTPNDNAPRKHKKNTYSICKRHPLYVDFADVG 305
P L L + Q R +T C LY+DF
Sbjct: 226 MNRPFLLLMATPLERAQHL------HSSRHRRALDTNYCFSSTEKNCCVRQLYIDFRKDL 279
Query: 306 WNDWIVENIRKILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTN 365
W WI P GY A C G CP+ + T
Sbjct: 280 G---------------------------WK-WIHEPKGYHANFCLGPCPYIWSLD---TQ 308
Query: 366 HAIVQTLMNSVQPETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
++ V L N P CCVP AL + ++Y ++ +M V C C
Sbjct: 309 YSKVLALYNQHNPGASAAPCCVPQALEPLPIVYYVGRK-PKVEQLSNMIVRSCKC 362
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor,
cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Length = 110
Score = 175 bits (444), Expect = 2e-54
Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+ L V+F D+GW+ WI+AP Y+A+ CKG C FPLA+ + T HAIVQTL++ P V
Sbjct: 10 KTSLRVNFEDIGWDSWIIAPKEYEAYECKGGCFFPLADDVTPTKHAIVQTLVHLKFPTKV 69
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLK-TYQDMAVTGCGCR 421
KACCVPT LS IS+LY D+ LK Y+ M+V CGCR
Sbjct: 70 GKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein;
2.21A {Homo sapiens}
Length = 110
Score = 174 bits (443), Expect = 3e-54
Identities = 45/101 (44%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQ-PET 380
R L VDFAD+GW++WI++P +DA+ C G C FP+ + L +NHA +Q+++ +V
Sbjct: 10 RRYLKVDFADIGWSEWIISPKSFDAYYCSGACQFPMPKSLKPSNHATIQSIVRAVGVVPG 69
Query: 381 VPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
+P+ CCVP +S++S+L+ DE+ VVLK Y +M V C CR
Sbjct: 70 IPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVESCACR 110
>3evs_B Growth/differentiation factor 5; ligand-receptor complex,
cystin-knot ligand, three-finger to (receptor); 2.10A
{Homo sapiens} PDB: 1waq_A 3qb4_A 2bhk_A
Length = 117
Score = 172 bits (436), Expect = 5e-53
Identities = 59/100 (59%), Positives = 74/100 (74%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R L+V+F D+GW+DWI+AP Y+AF C+G C FPL HL TNHA++QTLMNS+ PE+
Sbjct: 18 RKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST 77
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
P CCVPT LS IS+L++D N VV K Y+DM V CGCR
Sbjct: 78 PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR 117
>1lxi_A Bone morphogenetic protein 7; cystine-knot growth factor,
hormone-growth factor complex; HET: NAG; 2.00A {Homo
sapiens} SCOP: g.17.1.2 PDB: 1lx5_A* 1bmp_A* 1m4u_L*
2qcw_A 2r53_A
Length = 139
Score = 171 bits (435), Expect = 2e-52
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A+ C+G+C FPL ++N+TNHAIVQTL++ + PETV
Sbjct: 40 KHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETV 99
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
PK CC PT L+AIS+LY D+ + V+LK Y++M V CGC
Sbjct: 100 PKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 138
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily,
ligand-receptor complex, hormone/growth factor complex;
1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A
3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Length = 114
Score = 168 bits (428), Expect = 8e-52
Identities = 82/100 (82%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 16 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 74
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVVLK YQDM V GCGCR
Sbjct: 75 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 114
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 169 bits (428), Expect = 2e-51
Identities = 58/99 (58%), Positives = 75/99 (75%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A C G+C FPL H+N+TNHAIVQTL++ + PE V
Sbjct: 44 KHELYVSFQDLGWQDWIIAPKGYAANYCDGECSFPLNAHMNATNHAIVQTLVHLMNPEYV 103
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
PK CC PT L+AIS+LY D+++ V+LK Y++M V CGC
Sbjct: 104 PKPCCAPTKLNAISVLYFDDNSNVILKKYRNMVVRACGC 142
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain,
kazal domain, PROT complex, hormone-growth factor
complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2
PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Length = 116
Score = 158 bits (401), Expect = 7e-48
Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNS--TNHAIVQTL--MNSVQ 377
+ +V F D+GWNDWI+AP GY A C+G+CP +A S + H+ V M
Sbjct: 13 KKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHS 72
Query: 378 PETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
P K+CCVPT L +SMLY D+ ++ K Q+M V CGC
Sbjct: 73 PFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>2tgi_A Transforming growth factor ,beta 2; 1.80A {Homo sapiens} SCOP:
g.17.1.2 PDB: 1tfg_A 1tgj_A 1ktz_A 1tgk_A 2pjy_A 3eo1_C
1kla_A 1klc_A 1kld_A 3kfd_A
Length = 112
Score = 148 bits (375), Expect = 5e-44
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
PLY+DF WI P GY+A C G CP+ + T H+ V +L N++ PE
Sbjct: 17 LRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLWSSD---TQHSRVLSLYNTINPEAS 73
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CCV L +++LY ++ +M V C C
Sbjct: 74 ASPCCVSQDLEPLTILYYIGKT-PKIEQLSNMIVKSCKC 111
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB
domain, cystine knot motif, TGF- fold, disulfide linked
dimer, CLE PAIR of basic residues, cytokine; HET: CIT;
2.15A {Mus musculus} PDB: 3sek_B*
Length = 109
Score = 146 bits (371), Expect = 2e-43
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
R+PL VDF GW DWI+AP Y A C G+C F + T+ L++ P
Sbjct: 17 RYPLTVDFEAFGW-DWIIAPKRYKANYCSGECEFVFLQKYPHTH------LVHQANPRGS 69
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CC PT +S I+MLY + +++ M V CGC
Sbjct: 70 AGPCCTPTKMSPINMLYFNGKEQIIYGKIPAMVVDRCGC 108
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor,
cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2
PDB: 3fub_B* 2v5e_B*
Length = 135
Score = 93.3 bits (231), Expect = 4e-23
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
++++ D+G C G C + + + + V
Sbjct: 44 LTAIHLNVTDLGLGYE--TKEELIFRYCSGSCEAAETMYDKILKNLSRS---RRLTSDKV 98
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
+ACC P A + +LD + +V + + CGC
Sbjct: 99 GQACCRPVAFDD-DLSFLD--DSLVYHILRKHSAKRCGC 134
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth
factor, sulfates, hormone/growth factor complex; 1.55A
{Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Length = 113
Score = 90.0 bits (223), Expect = 4e-22
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 19/106 (17%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFV------CKGDCPFPLAEHLNSTNHAIVQTLMNS 375
V +G G+ + C G C + H S + +
Sbjct: 18 LRSQLVPVRALGL--------GHRSDELVRFRFCSGSCRRARSPHDLSLASLLGAGALRP 69
Query: 376 VQPETV-PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
+ CC PT A+S + D +T ++ T CGC
Sbjct: 70 PPGSRPVSQPCCRPTRYEAVSFM----DVNSTWRTVDRLSATACGC 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 3e-11
Identities = 66/451 (14%), Positives = 139/451 (30%), Gaps = 109/451 (24%)
Query: 9 TVLATLNS----ITISTTSAEDSVQLDKKALQQVESNLLSLFGLNRRPRPNR----KNVR 60
TVL L I + TS D K + +++ L L +P N NV+
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQ 254
Query: 61 IPKAMLDLYKLQ-----TGQD--VDTSMLPLPGRHTRSANTVRTFTHQVTNIDKRFKYLN 113
KA + + L T + V + H + T T D+ L
Sbjct: 255 NAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLL 308
Query: 114 KFRLHFDVTSLPDTERVQS----------AELR--LSRPMNYEEDKHEQIQRIIVK--DI 159
K+ L LP V + +R L+ N++ +++ II ++
Sbjct: 309 KY-LDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 160 LQPGIKGISKPVLRIVDSVLVDSTSGENGVSLDVLPAVQRWTKSPEHNHGLLIEVTNRDG 219
L+P + + + SV S + +L + W + + +++ ++
Sbjct: 366 LEP---AEYRKMFDRL-SVFPPSAH----IPTILLSLI--WFDVIKSDVMVVVNKLHKYS 415
Query: 220 VLLDRNIRPLVVMKRDQEEYNDLEWTSLEPILFLYSDDGRNKQKSLEDLLKRPRRTPNDN 279
L+++ K + + ++ +S+ D P+ +D+
Sbjct: 416 -LVEKQ------PKESTISIPSIYLELKVKL-----ENEYALHRSIVDHYNIPKTFDSDD 463
Query: 280 APRKHKKN-TYSICKRH--------------PLYVDFADVGWNDWIVENIRKILIPYRHP 324
+ YS H +++DF ++ + IR +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIRHDSTAWNAS 517
Query: 325 LYV--DFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSV-QPETV 381
+ + + Y ++C D +V +++ + + E
Sbjct: 518 GSILNTLQQLKF---------YKPYICDND----------PKYERLVNAILDFLPKIEEN 558
Query: 382 ----PKACCVPTALSAISMLYLDEDNKVVLK 408
+ AL A +E +K V +
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 61.0 bits (147), Expect = 5e-10
Identities = 53/373 (14%), Positives = 106/373 (28%), Gaps = 86/373 (23%)
Query: 100 HQVTNIDKRFKYLNKFRLHFDVTSLPDTER--VQSAELR--LSRPMNYE---------ED 146
HQ D + + F +FD + D + + E+ +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 147 KHEQIQRIIVKDILQPG-----------IKGISKPVLRIVDSVLVDSTSGENGVSLDV-- 193
K E++ + V+++L+ + S ++ + +V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 194 ---LPAVQRWTKS--PEHN---HG--------LLIEVTNRDGVL--LDRNIRPLVVMKRD 235
+++ P N G + ++V V +D I L + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 236 QEEYNDLEWTSLEPILFLYSDDGRNKQKSLEDLLKRPRRTPNDNAPRKHKKNTYSICKRH 295
E T LE + L N S D + + + + K +
Sbjct: 194 SPE------TVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHS---IQAELRRLLKSKPY 243
Query: 296 P---LYVDFADVGWNDWIVE--NIR-KILIPYRHPLYVDFADVGWNDWIVAPPGYDAFVC 349
L + +V N N+ KIL+ R D++ A +
Sbjct: 244 ENCLLVLL--NV-QNAKAWNAFNLSCKILLTTR--------FKQVTDFLSAATTTHISLD 292
Query: 350 KGDCPFPLAEHLNSTNHAIVQTLMNSVQPETVPK-ACCV-PTALSAISMLYLDE----DN 403
E +++ ++ +P+ +P+ P LS I+ D DN
Sbjct: 293 HHSMTLTPDEVK-----SLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 404 KVVLKTYQDMAVT 416
K +T
Sbjct: 347 ---WKHVNCDKLT 356
Score = 39.5 bits (91), Expect = 0.002
Identities = 51/352 (14%), Positives = 91/352 (25%), Gaps = 137/352 (38%)
Query: 6 MVVTVLATLNSITISTTSAEDSVQLDK------KALQQVESNL-------LSLFGLNRRP 52
++++A ++T V DK +L +E LS+F
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF------ 381
Query: 53 RPNRKNVRIPKAMLDLYKLQ-TGQDVDTSMLPLPGRHTRSANTVRTFTHQVTNIDKRFKY 111
+ IP +L L DV + L H S ++K+ K
Sbjct: 382 ---PPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSL------------VEKQPKE 423
Query: 112 LNKFRLHFDVTSLPDTERVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPGIKGISKPV 171
+ + S L L + E H
Sbjct: 424 -STISIP-------------SIYLELKVKLENEYALHR---------------------- 447
Query: 172 LRIVDSVLVDSTSGENGVSLDVLPAVQRWTKSPEHN----------HGLLIEVTNRDGVL 221
IVD ++ P + H L + + + +
Sbjct: 448 -SIVDHY-------------NIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMT 491
Query: 222 LDRNIRPLVVMKRDQEEYNDLEWTSLEPILFLYSDDGRNKQKSLEDLLKRPRRTPNDNAP 281
L R + + D + LE + + N S+ + L++
Sbjct: 492 LFRMV------------FLDFRF--LEQKI-RHDSTAWNASGSILNTLQQ---------L 527
Query: 282 RKHKKNTYSICKRHPLYVDFADVGWNDWIVENIRKILIPYRHPLYV-DFADV 332
+ +K Y IC P Y + +V I L L + D+
Sbjct: 528 KFYKP--Y-ICDNDPKY---------ERLVNAILDFLPKIEENLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 76/512 (14%), Positives = 127/512 (24%), Gaps = 170/512 (33%)
Query: 20 STTSAEDSVQLDKKALQQVESNLL----------SLFGLNRRPRPNRKNVRIPKAMLDLY 69
S D V L L + E+ L L N K + + Y
Sbjct: 75 SKVGQFDQV-L-NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL------IKNY 126
Query: 70 ---KLQTGQDVDTSMLPLPGRHT----RSANT--VRTFTH---QVTNIDKRFKYLNKFRL 117
++ + P + R+ + Q D Y + R
Sbjct: 127 ITARIMAKR-------PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD----YFEELRD 175
Query: 118 HFDVTSLPDTER-VQSAELRLSRPMNYEEDKHEQIQRIIVKDILQ--------PGIK--- 165
+ T ++ + LS + D + + + +IL+ P
Sbjct: 176 LYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLL 232
Query: 166 --GISKPVLRIVDSV---------------LVDSTSGENGVSLDVLPAVQRWTKSPEHNH 208
IS P++ ++ L G G S ++ AV
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV----------- 281
Query: 209 GLLIEVTNRDGVLLDRNIRPLVVM----KRDQEEYNDLEWTSLEPILFLYSDDGRNKQKS 264
I T+ + + V+ R E Y + TSL P + S + S
Sbjct: 282 --AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSILEDSLENNEGVPS 336
Query: 265 ---------LEDLLKRPRRT----PND--------NAPRKHKKNTYSICKRHP--LYVDF 301
E + +T P N + + P LY
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL------VVSGPPQSLYG-- 388
Query: 302 ADVGWNDWIVENIRKIL---------IPY--RHP-LYVDFADVGWNDWIVAP-------P 342
+ +RK IP+ R F V +P P
Sbjct: 389 --------LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA------SPFHSHLLVP 434
Query: 343 GYDAF---VCKGDCPFP---LAEHLNSTNHAI-VQTLMNSVQPETVPKACCVP------T 389
D + K + F + + T ++ L S+ V +P T
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 390 ALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
A +L L G G R
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 38.1 bits (88), Expect = 0.006
Identities = 62/424 (14%), Positives = 116/424 (27%), Gaps = 162/424 (38%)
Query: 91 SANTVRTFTHQVTNIDKRFK-----YLNKFRL--HFDVTSLP--------DTERVQSAEL 135
A + R T +++ + +L F LP D E AEL
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADDEPTTPAEL 60
Query: 136 RLSRPMNYEEDKHEQIQRIIVKDILQPGIKGISKPVLR------IVDSVLVDSTSGENGV 189
+ + + Y E + +L + L + +L ++ +
Sbjct: 61 -VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT---- 115
Query: 190 SLDVLPAVQRWTKS-------------PEHNHGLLIEVTNRDGVL-------------LD 223
L + K+ + N L V + L +
Sbjct: 116 ----LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 224 --RNI----RPLV--VMKRDQEEYNDLEWTSLEPILFLYSDDGRNKQKSLEDLLKRPRRT 275
R++ LV ++K E ++L T+L+ +++ G N + + L+ P T
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQ-GLN----ILEWLENPSNT 225
Query: 276 PNDN----APRKHKKNTYSICKRHPL--------YVDFADV-GWN--------------- 307
P+ + P S PL YV A + G+
Sbjct: 226 PDKDYLLSIP-------ISC----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 308 -------------DW--IVENIRKIL-----IPYR----HP-------LYVDFADVGWND 336
W ++RK + I R +P + D +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN--- 331
Query: 337 WIVAPPGYDAFVCKGDCPFPLAEHLNSTNH------AIVQTLMNSVQPETVPKACCV--- 387
P + +++N TN + +L+N K V
Sbjct: 332 --EGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNLVVSGP 382
Query: 388 PTAL 391
P +L
Sbjct: 383 PQSL 386
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.088
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 9/25 (36%)
Query: 261 KQ--KSLEDLLK--RPRRTPNDNAP 281
KQ K L+ LK D+AP
Sbjct: 19 KQALKKLQASLKLYAD-----DSAP 38
Score = 31.1 bits (69), Expect = 0.36
Identities = 6/22 (27%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 31 DKKALQQVESNLLSLFGLNRRP 52
+K+AL++++++ L L+ + P
Sbjct: 18 EKQALKKLQAS-LKLYADDSAP 38
Score = 28.8 bits (63), Expect = 2.5
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
Query: 235 DQEEYNDLEWTSLEPILFLYSDD 257
+++ L+ SL+ LY+DD
Sbjct: 18 EKQALKKLQ-ASLK----LYADD 35
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 31.4 bits (72), Expect = 0.48
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 4 LLMVVTVLATLNSITISTTSAEDSVQLDKKALQQVESNLL 43
++ ++ LA ++ + I T A SV +++ +Q N++
Sbjct: 93 VIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCLLNVM 132
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel
antibody, addiction antidote, immun; 1.65A {Escherichia
coli} SCOP: b.129.1.1 PDB: 1ub4_C
Length = 82
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 55 NRKNVRIPKAMLDLYKLQTGQDVDTSM 81
N VRIP ++ L +V +
Sbjct: 11 NSPAVRIPATLMQALNLNIDDEVKIDL 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.1 bits (66), Expect = 2.0
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 10/49 (20%)
Query: 264 SLEDLLKRPRRTPNDNA--------PRKHKKNTYSICKRHPLYVDFADV 304
E+L R + + + + + +R LY D A
Sbjct: 103 PAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLR--EREALYQDVAHY 149
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 28.3 bits (64), Expect = 3.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 264 SLEDLLKRPRRTPN------DNAPRKHKKNTYSICKRHPLYVDFADV 304
++E L R +R + PR+ + + +R+PLY + ADV
Sbjct: 106 TIEKQLARTQRDKKRPLLHVETPPREVLEALAN--ERNPLYEEIADV 150
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 27.5 bits (62), Expect = 7.7
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 5 LMVVTVLATLNSITISTTSAED--SVQLDKKALQQVESNLLS 44
A L +T++ ED ++ D K L Q +L+
Sbjct: 124 QERALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQTLDHLVE 165
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 27.9 bits (62), Expect = 7.9
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 108 RFKYLNKFRLHFDVTSLPDTERVQSAELRLSRPMNYEEDKHEQIQRIIVKDILQPG---- 163
F Y R + T + +R+ S E+ + +E + + + G
Sbjct: 465 AFPYGAGIRYEANETPNAEGKRLVSVEVLNKQTQQWEPIDDNKRYLVGTNAYVAGGKDGY 524
Query: 164 ---IKGISKPVLRIVDSVLVD 181
K + P VD+ L D
Sbjct: 525 KTFGKLFNDPKYEGVDTYLPD 545
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 27.4 bits (61), Expect = 9.5
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 13/145 (8%)
Query: 183 TSGENGVSLDVLPAVQRWTKSPEHNHGL---LIEVTNRDGVLLDRNIRPLVVMKRDQEEY 239
+ ++ + W GL + T+ ++D+ I LV + E+
Sbjct: 433 NLTDKYPNIVSDNEINEWIFKA----GLPSYAPQPTSNAFKVIDKQINQLVTDELTLEQL 488
Query: 240 NDLEWTSLEPILFLYSDDGRNKQKSLEDLLKRPRRTPNDNAPRKHKKNTYSICKRHPLYV 299
+WT E + F+ + + + +L K T + NA H S+ +
Sbjct: 489 PTAQWTLHEWLHFINNLPVDLDHQRMVNLDKAFDLTNSSNAEIAHAWYLLSVRADYKEVY 548
Query: 300 DFADVGWNDWIVENIR-KILIP-YR 322
++ R K+++P Y+
Sbjct: 549 PAMA----KYLKSIGRRKLIVPLYK 569
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,402,871
Number of extensions: 381998
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 46
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)