RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16788
(423 letters)
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 174 bits (442), Expect = 1e-54
Identities = 82/100 (82%), Positives = 89/100 (89%), Gaps = 1/100 (1%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
RHPLYVDF+DVGWNDWIVAPPGY AF C G+CPFPLA+HLNSTNHAIVQTL+NSV + +
Sbjct: 5 RHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSK-I 63
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGCR 421
PKACCVPT LSAISMLYLDE+ KVVLK YQDM V GCGCR
Sbjct: 64 PKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 103
>d1lxia_ g.17.1.2 (A:) Bone morphogenetic protein-7 (BMP-7) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 167 bits (425), Expect = 5e-52
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
+H LYV F D+GW DWI+AP GY A+ C+G+C FPL ++N+TNHAIVQTL++ + PETV
Sbjct: 5 KHELYVSFRDLGWQDWIIAPEGYAAYYCEGECAFPLNSYMNATNHAIVQTLVHFINPETV 64
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
PK CC PT L+AIS+LY D+ + V+LK Y++M V CGC
Sbjct: 65 PKPCCAPTQLNAISVLYFDDSSNVILKKYRNMVVRACGC 103
>d2arpa1 g.17.1.2 (A:1-116) Activin A (Inhibin beta A) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 116
Score = 160 bits (406), Expect = 5e-49
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNST----NHAIVQTLMNSVQ 377
+ +V F D+GWNDWI+AP GY A C+G+CP +A S+ + I M
Sbjct: 13 KKQFFVSFKDIGWNDWIIAPSGYHANYCEGECPSHIAGTSGSSLSFHSTVINHYRMRGHS 72
Query: 378 PETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
P K+CCVPT L +SMLY D+ ++ K Q+M V CGC
Sbjct: 73 PFANLKSCCVPTKLRPMSMLYYDDGQNIIKKDIQNMIVEECGC 115
>d2tgia_ g.17.1.2 (A:) TGF-beta2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 112
Score = 150 bits (379), Expect = 4e-45
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLMNSVQPETV 381
PLY+DF WI P GY+A C G CP+ + T H+ V +L N++ PE
Sbjct: 17 LRPLYIDFKRDLGWKWIHEPKGYNANFCAGACPYLW---SSDTQHSRVLSLYNTINPEAS 73
Query: 382 PKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
CCV L +++LY ++ +M V C C
Sbjct: 74 ASPCCVSQDLEPLTILYYIGKT-PKIEQLSNMIVKSCKC 111
>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor, GDNF
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 116 bits (292), Expect = 1e-32
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 322 RHPLYVDFADVGWNDWIVAPPGYDAFVCKGDCPFPLAEHLNSTNHAIVQTLM---NSVQP 378
++++ D+G C G C T + + + +
Sbjct: 6 LTAIHLNVTDLGLG--YETKEELIFRYCSGSCEAA------ETMYDKILKNLSRSRRLTS 57
Query: 379 ETVPKACCVPTALSAISMLYLDEDNKVVLKTYQDMAVTGCGC 420
+ V +ACC P A + +LD + +V + + CGC
Sbjct: 58 DKVGQACCRPVAFDD-DLSFLD--DSLVYHILRKHSAKRCGC 96
>d1mvfd_ b.129.1.1 (D:) MazE {Escherichia coli [TaxId: 562]}
Length = 44
Score = 28.4 bits (64), Expect = 0.18
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 55 NRKNVRIPKAMLDLYKLQTGQDVD 78
N VRIP ++ L +V
Sbjct: 8 NSPAVRIPATLMQALNLNIDDEVK 31
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio
mixtus [TaxId: 39650]}
Length = 131
Score = 28.1 bits (62), Expect = 1.0
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 305 GWNDWIVENIRKILIPYRHPLYVDFADVGWN-DWI 338
GW W L H + GWN +WI
Sbjct: 91 GWQTWTTIQHTVNLSAGSHQFGIKANAGGWNLNWI 125
>g1ugx.1 b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus
heterophyllus) [TaxId: 3489]}
Length = 148
Score = 28.3 bits (63), Expect = 1.1
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 306 WNDWIVENIRKILIPYRHPLYVDF 329
++D IR+I + Y +
Sbjct: 19 FDDGAFTGIREINLSYNKETAIGD 42
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
{Thermotoga maritima [TaxId: 2336]}
Length = 535
Score = 26.7 bits (57), Expect = 5.9
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 296 PLYVDFADVGWNDWIVENIRKILIPYRHPLYVDFADVGWNDW 337
PL+ + A ++ + N PY P+ GWN W
Sbjct: 486 PLWYNGAWFQASEAVWTNWPTEKNPYAVPI-------GWNGW 520
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 26.2 bits (56), Expect = 6.7
Identities = 31/226 (13%), Positives = 58/226 (25%), Gaps = 38/226 (16%)
Query: 205 EHNHGLLIEVTNRDGVLLDRNIRPLVVMKRDQEEYNDLEWTSLE---------------- 248
E + ++ + L+ ++ L D + E
Sbjct: 30 EQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDA 89
Query: 249 -PILFLYSDDGRNKQKSLEDLLKRPRRTPNDNAPRKHKKNT--------YSICKRHPLYV 299
+ DD + ++ L + R + T + CK H L+
Sbjct: 90 KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP 149
Query: 300 DFADVGWN-DWIVENIRKILIPYRHPLYVDFADVGWNDWIVAP-PGYDAFVCKGDCPFPL 357
A G EN+ K++ P L + D PL
Sbjct: 150 VAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPL 209
Query: 358 AEHLNSTNHAI-----------VQTLMNSVQPETVPKACCVPTALS 392
+ L+ + L+ V + P+ +P LS
Sbjct: 210 MKFLHPEIVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLS 255
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,563,471
Number of extensions: 74814
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 15
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)