BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16789
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 249/539 (46%), Gaps = 72/539 (13%)
Query: 88 FSSEQKMMAVRCIPKEGSSCDVDTRFFFLHRLLEVGCVCNNASIIGDSLLGQPTEGALLA 147
FS ++K M+V C P + S V + F V CN + T +
Sbjct: 488 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRV--------GTTRVPMT 539
Query: 148 AGMKFGLYAVNEHYVRLKEYPFSSEQ-KMMAVRVHKIGHNLPSKRDGKMILSQSCSEYPK 206
+K + +V +KE+ + + +A+ + P KR+ +M+L S S + +
Sbjct: 540 GPVKEKILSV------IKEWGTGRDTLRCLALATR----DTPPKRE-EMVLDDS-SRFME 587
Query: 207 FQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQET 266
++T DL ++G+VG+ DPPR V + +G++V ++TGD + T
Sbjct: 588 YET---------------DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGT 632
Query: 267 ATAIASMVGL----DTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAF 322
A AI +G+ + + + +G + D + + ++ F RV P HK IV+
Sbjct: 633 AIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYL 692
Query: 323 QANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEG 382
Q+ I MTGDGVND ALKKA+IGIAMG GT V K A++M+L DD+F+TI+AA+EEG
Sbjct: 693 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 383 KGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPAQSLGVE 442
+ I+ N++ F+R+ +P L +Q+LW+N++ DG PA +LG
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 811
Query: 443 PVDDDVKIQKPRNVKEPMITRALVVNVLMSASI---------------------IIVGTL 481
P D D+ + PR+ KEP+I+ L + + L
Sbjct: 812 PPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQL 871
Query: 482 YVFKREMSDN----------IVSKRDTTMTFTCFVFFDMFNALSCRSQIKSVFTIGLFTN 531
F + D+ + TM + V +M NAL+ S+ +S+ + + N
Sbjct: 872 THFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVN 931
Query: 532 KMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFVSEIKKAIER 590
L ++C S+ ++Y PL +F+ +AL + + ++ V + EI K I R
Sbjct: 932 IWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIAR 990
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 149/539 (27%), Positives = 249/539 (46%), Gaps = 72/539 (13%)
Query: 88 FSSEQKMMAVRCIPKEGSSCDVDTRFFFLHRLLEVGCVCNNASIIGDSLLGQPTEGALLA 147
FS ++K M+V C P + S V + F V CN + T +
Sbjct: 487 FSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRV--------GTTRVPMT 538
Query: 148 AGMKFGLYAVNEHYVRLKEYPFSSEQ-KMMAVRVHKIGHNLPSKRDGKMILSQSCSEYPK 206
+K + +V +KE+ + + +A+ + P KR+ +M+L S S + +
Sbjct: 539 GPVKEKILSV------IKEWGTGRDTLRCLALATR----DTPPKRE-EMVLDDS-SRFME 586
Query: 207 FQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQET 266
++T DL ++G+VG+ DPPR V + +G++V ++TGD + T
Sbjct: 587 YET---------------DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGT 631
Query: 267 ATAIASMVGL----DTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAF 322
A AI +G+ + + + +G + D + + ++ F RV P HK IV+
Sbjct: 632 AIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYL 691
Query: 323 QANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEG 382
Q+ I MTGDGVND ALKKA+IGIAMG GT V K A++M+L DD+F+TI+AA+EEG
Sbjct: 692 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 383 KGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPAQSLGVE 442
+ I+ N++ F+R+ +P L +Q+LW+N++ DG PA +LG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 810
Query: 443 PVDDDVKIQKPRNVKEPMITRALVVNVLMSASI---------------------IIVGTL 481
P D D+ + PR+ KEP+I+ L + + L
Sbjct: 811 PPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQL 870
Query: 482 YVFKREMSDN----------IVSKRDTTMTFTCFVFFDMFNALSCRSQIKSVFTIGLFTN 531
F + D+ + TM + V +M NAL+ S+ +S+ + + N
Sbjct: 871 THFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVN 930
Query: 532 KMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFVSEIKKAIER 590
L ++C S+ ++Y PL +F+ +AL + + ++ V + EI K I R
Sbjct: 931 IWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIAR 989
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 214/441 (48%), Gaps = 53/441 (12%)
Query: 185 HNLPSKRDGKMILSQSCSEYPKFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRE 244
+ P KR+ +M+L S S + +++T DL ++G+VG+ DPPR V
Sbjct: 567 RDTPPKRE-EMVLDDS-SRFMEYET---------------DLTFVGVVGMLDPPRKEVMG 609
Query: 245 CMSTLLQSGVKVKLVTGDGQETATAIASMVGL----DTIHGKVLSGDQIDQMTEHQLQQV 300
+ +G++V ++TGD + TA AI +G+ + + + +G + D + + ++
Sbjct: 610 SIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREA 669
Query: 301 VNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCK 360
F RV P HK IV+ Q+ I MTGDGVND ALKKA+IGIAMG GT V K
Sbjct: 670 CRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAK 728
Query: 361 EAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLN 420
A++M+L DD+F+TI+AA+EEG+ I+ N++ F+R+ +P L
Sbjct: 729 TASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALI 788
Query: 421 AMQILWINIIMDGPPAQSLGVEPVDDDVKIQKPRNVKEPMITRALVVNVLMSASI----- 475
+Q+LW+N++ DG PA +LG P D D+ + PR+ KEP+I+ L +
Sbjct: 789 PVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAAT 848
Query: 476 ----------------IIVGTLYVFKREMSDN----------IVSKRDTTMTFTCFVFFD 509
+ L F + D+ + TM + V +
Sbjct: 849 VGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIE 908
Query: 510 MFNALSCRSQIKSVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIA 569
M NAL+ S+ +S+ + + N L ++C S+ ++Y PL +F+ +AL +
Sbjct: 909 MCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWL 968
Query: 570 FLTALTSTVFFVSEIKKAIER 590
+ ++ V + EI K I R
Sbjct: 969 MVLKISLPVIGLDEILKFIAR 989
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 217/441 (49%), Gaps = 53/441 (12%)
Query: 185 HNLPSKRDGKMILSQSCSEYPKFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRE 244
+ P KR+ +M+L S +++ +++T DL ++G+VG+ DPPR V
Sbjct: 566 RDTPPKRE-EMVLDDS-TKFMEYET---------------DLTFVGVVGMLDPPRKEVMG 608
Query: 245 CMSTLLQSGVKVKLVTGDGQETATAIASMVGL----DTIHGKVLSGDQIDQMTEHQLQQV 300
+ +G++V ++TGD + TA AI +G+ + + + +G + D + + ++
Sbjct: 609 SIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREA 668
Query: 301 VNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCK 360
F RV P HK IV+ Q+ I MTGDGVND ALKKA+IGIAMG GT V K
Sbjct: 669 CRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAK 727
Query: 361 EAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLN 420
A++M+L DD+F+TI+AA+EEG+ I+ N++ F+R+ +P L
Sbjct: 728 TASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALI 787
Query: 421 AMQILWINIIMDGPPAQSLGVEPVDDDVKIQKPRNVKEPMIT-----RALVVNVLMSASI 475
+Q+LW+N++ DG PA +LG P D D+ + PR KEP+I+ R + + + A+
Sbjct: 788 PVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLISGWLFFRYMAIGGYVGAAT 847
Query: 476 IIVGTLYVFKREMSDNIVSKRDT--------------------------TMTFTCFVFFD 509
+ + E ++ + T TM + V +
Sbjct: 848 VGAAAWWFLYAEDGPHVTYSQLTHFMKCSEHSPDFEGVDCEVFEAPQPMTMALSVLVTIE 907
Query: 510 MFNALSCRSQIKSVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIA 569
M NAL+ S+ +S+ + + N + ++ S+ ++Y PL +F+ +AL +
Sbjct: 908 MCNALNSLSENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMIFKLQALDLYHWL 967
Query: 570 FLTALTSTVFFVSEIKKAIER 590
+ ++ V + EI K + R
Sbjct: 968 MVLKISLPVIGLDEILKFVAR 988
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 140/261 (53%), Gaps = 26/261 (9%)
Query: 223 LQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL-----D 277
L +LC++GL+ + DPPR V + + +G+KV +VTGD TA AIA VG+ +
Sbjct: 549 LDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 608
Query: 278 TIH-------------------GKVLSGDQIDQMTEHQLQQVVNSVT--VFYRVTPRHKL 316
T+ V+ G + MT QL ++ T VF R +P+ KL
Sbjct: 609 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKL 668
Query: 317 TIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTII 376
IV+ Q G IV +TGDGVND A KKADIG+AMG G+DV K+AADMIL+DD+F +I+
Sbjct: 669 IIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 728
Query: 377 AAIEEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPA 436
+EEG+ IF N++ + + IP PL + IL I++ D PA
Sbjct: 729 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPA 788
Query: 437 QSLGVEPVDDDVKIQKPRNVK 457
SL E + D+ ++PRN K
Sbjct: 789 ISLAYEQAESDIMKRQPRNPK 809
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 140/261 (53%), Gaps = 26/261 (9%)
Query: 223 LQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL-----D 277
L +LC++GL+ + DPPR V + + +G+KV +VTGD TA AIA VG+ +
Sbjct: 555 LDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 614
Query: 278 TIH-------------------GKVLSGDQIDQMTEHQLQQVVNSVT--VFYRVTPRHKL 316
T+ V+ G + MT QL ++ T VF R +P+ KL
Sbjct: 615 TVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKL 674
Query: 317 TIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTII 376
IV+ Q G IV +TGDGVND A KKADIG+AMG G+DV K+AADMIL+DD+F +I+
Sbjct: 675 IIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 734
Query: 377 AAIEEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPA 436
+EEG+ IF N++ + + IP PL + IL I++ D PA
Sbjct: 735 TGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPA 794
Query: 437 QSLGVEPVDDDVKIQKPRNVK 457
SL E + D+ ++PRN K
Sbjct: 795 ISLAYEQAESDIMKRQPRNPK 815
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 26/259 (10%)
Query: 225 DLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL-----DTI 279
DLC++GL+ + DPPR V + + +G+KV +VTGD TA AIA VG+ +TI
Sbjct: 587 DLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETI 646
Query: 280 H-------------------GKVLSGDQIDQMTEHQLQQVVNSVT--VFYRVTPRHKLTI 318
V+ G + ++ L +++ T VF R +P+ KL I
Sbjct: 647 EDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLII 706
Query: 319 VKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAA 378
V+ Q G IV +TGDGVND ALKKADIG+AMG G+DV K+AADMIL+DD+F +I+
Sbjct: 707 VEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTG 766
Query: 379 IEEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPAQS 438
+EEG+ IF N++ + + +P PL + IL I++ D PA S
Sbjct: 767 VEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAIS 826
Query: 439 LGVEPVDDDVKIQKPRNVK 457
L E + D+ ++PRN K
Sbjct: 827 LAYEQAESDIMKRQPRNPK 845
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/431 (28%), Positives = 195/431 (45%), Gaps = 64/431 (14%)
Query: 226 LCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL--------- 276
L + GLV + DPPR V + + +G++V +VTGD TA AIA+ VG+
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVE 652
Query: 277 ----------DTIHGK-----VLSGDQIDQMTEHQLQQVVNS--VTVFYRVTPRHKLTIV 319
D ++ K V++G Q+ M +L + + + VF R +P+ KL IV
Sbjct: 653 DIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIV 712
Query: 320 KAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAI 379
++ Q G IV +TGDGVND ALKKADIG+AMG G+D K AADMIL+DD+F +I+ +
Sbjct: 713 ESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGV 772
Query: 380 EEGKGIFYNIRNFVRFQXXXXXXXXXXXXXXXXXRIPNPLNAMQILWINIIMDGPPAQSL 439
E+G+ IF N++ + + +P PL + IL+I + D P+ SL
Sbjct: 773 EQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSL 832
Query: 440 GVEPVDDDVKIQKPRN------VKEPMITRALV-VNVLMSAS----------------II 476
E + D+ +PRN V EP+ + + + S + ++
Sbjct: 833 AYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLL 892
Query: 477 IVGTLYVFKREMSDNIVSKRDTTMTF--------TCF-VFF------DMFNALSCRSQIK 521
VG ++ ++ TF TC+ VFF + + L +++
Sbjct: 893 CVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRL 952
Query: 522 SVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFV 581
S F G F N++ + A+ V F+ Y P + +F + +F
Sbjct: 953 SAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVY 1012
Query: 582 SEIKKAIERIC 592
EI+K R C
Sbjct: 1013 DEIRKLGVRCC 1023
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 8/173 (4%)
Query: 228 YMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGD----GQETATAIASMVGLDTIHGKV 283
++GL+ + DPPR E + L GV VK++TGD G+ET + +G +
Sbjct: 479 FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLG--MGTNMYPSSA 536
Query: 284 LSGDQID-QMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVAL 342
L G D + +++++ F V P HK IVK Q IVGMTGDGVND AL
Sbjct: 537 LLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPAL 596
Query: 343 KKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRF 395
KKADIGIA+ TD + A+D++L + + II+A+ + IF ++N+ +
Sbjct: 597 KKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIY 648
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 185 HNLPSKRDGKMILSQSCSEYPK--FQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHV 242
H +P + D +E+ F++LG VA RG ++ +G++ DPPR
Sbjct: 488 HPIPEEVD--QAYKNKVAEFATRGFRSLG---VARKRGEGSWEI--LGIMPCMDPPRHDT 540
Query: 243 RECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDT--IHGKVLSGDQIDQMTEHQLQQV 300
+ + G+ +K++TGD A + +GL T + + L M ++
Sbjct: 541 YKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDF 600
Query: 301 VNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCK 360
V + F V P+HK +V+ Q G +V MTGDGVND +LKKAD GIA+ + +D +
Sbjct: 601 VEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAV-EGSSDAAR 659
Query: 361 EAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRFQ 396
AAD++ + II A++ + IF+ + +V ++
Sbjct: 660 SAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYR 695
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 28/167 (16%)
Query: 229 MGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQ 288
+ L+ + DP + E + L QSG+++ ++TGD + TA A+A +G+
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK---------- 595
Query: 289 IDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIG 348
V + P K IV + G+IV M GDGVND AL KADIG
Sbjct: 596 -----------------VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIG 638
Query: 349 IAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRF 395
IAMG GTDV E+A + L+ D I A + NIR + F
Sbjct: 639 IAMGT-GTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFF 684
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR ++ G++ + D + + + L + G+KV ++TGD
Sbjct: 509 KLEREAKTAVIVARNGRVE-----GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 563
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 564 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 596
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 597 EV-VAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 654
Query: 386 FYNIRN 391
I+
Sbjct: 655 MSKIKQ 660
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 34/186 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR ++ G++ + D + + + L + G+KV ++TGD
Sbjct: 431 KLEREAKTAVIVARNGRVE-----GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 485
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 486 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 518
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 519 EV-VAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 576
Query: 386 FYNIRN 391
I+
Sbjct: 577 MSKIKQ 582
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 230 GLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQI 289
G++ + D RP RE +S L G+K ++TGD + A +A +GLD
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDY---------- 186
Query: 290 DQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGI 349
F V P K VK Q + M GDGVND AL +AD+GI
Sbjct: 187 -----------------FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGI 228
Query: 350 AMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
A+G GTDV E AD++LV +D + A +E
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVE 258
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 34/175 (19%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR ++ G++ + D + + + L + G+KV +TGD
Sbjct: 117 KLEREAKTAVIVARNGRVE-----GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWR 171
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 172 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 204
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+
Sbjct: 205 EV-VAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQ 257
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 71/151 (47%), Gaps = 29/151 (19%)
Query: 230 GLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQI 289
G++ + D RP RE +S L G+K ++TGD + A +A +GLD
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDY---------- 186
Query: 290 DQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGI 349
F V P K VK Q + M GDGVND AL +AD+GI
Sbjct: 187 -----------------FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGI 228
Query: 350 AMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
A+G GTDV E AD++LV +D + A +E
Sbjct: 229 AIG-AGTDVAVETADIVLVRNDPRDVAAIVE 258
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 34/185 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR ++ G++ + D + + + L + G+KV ++TGD
Sbjct: 137 KLEREAKTAVIVARNGRVE-----GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 191
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 192 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 224
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 225 EV-VAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 282
Query: 386 FYNIR 390
I+
Sbjct: 283 MSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 34/185 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR ++ G++ + D + + + L + G+KV ++TGD
Sbjct: 137 KLEREAKTAVIVARNGRVE-----GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 191
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 192 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 224
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 225 EV-VAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 282
Query: 386 FYNIR 390
I+
Sbjct: 283 MSKIK 287
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 28/150 (18%)
Query: 234 ICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMT 293
I D PRP++++ + L G+K+ +LSGD+ D++
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKII-------------------------ILSGDKEDKVK 167
Query: 294 EHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGK 353
E L + +N + ++P K+ I++ + NG V M GDGVND AL AD+ +AMG
Sbjct: 168 E--LSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG- 224
Query: 354 QGTDVCKEAADMILVDDDFNTIIAAIEEGK 383
G D+ K AD+ILV +D T++ I+ K
Sbjct: 225 NGVDISKNVADIILVSNDIGTLLGLIKNRK 254
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 28/150 (18%)
Query: 234 ICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMT 293
I D PRP++++ + L G+K+ +LSGD+ D++
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKII-------------------------ILSGDKEDKVK 167
Query: 294 EHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGK 353
E L + +N + ++P K+ I++ + NG V M GDGVND AL AD+ +AMG
Sbjct: 168 E--LSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG- 224
Query: 354 QGTDVCKEAADMILVDDDFNTIIAAIEEGK 383
G D+ K AD+ILV +D T++ I+ K
Sbjct: 225 NGVDISKNVADIILVSNDIGTLLGLIKNRK 254
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 28/150 (18%)
Query: 234 ICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMT 293
I D PRP++++ + L G+K+ +LSGD+ D++
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKII-------------------------ILSGDKEDKVK 167
Query: 294 EHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGK 353
E L + +N + ++P K+ I++ + NG V M GDGVND AL AD+ +AMG
Sbjct: 168 E--LSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG- 224
Query: 354 QGTDVCKEAADMILVDDDFNTIIAAIEEGK 383
G D+ K AD+ILV +D T++ I+ K
Sbjct: 225 NGVDISKNVADIILVSNDIGTLLGLIKNRK 254
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 41/150 (27%)
Query: 231 LVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQID 290
L + + +P V+E L + G+KV +TGD +A AI+ + LD + +VL
Sbjct: 20 LTKLKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVL------ 69
Query: 291 QMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIA 350
P K VK QA V V GDG+ND AL +AD+GIA
Sbjct: 70 ---------------------PHQKSEEVKKLQAKEV-VAFVGDGINDAPALAQADLGIA 107
Query: 351 MGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
+G + D++L+ DD ++AAI+
Sbjct: 108 VG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 24/133 (18%)
Query: 240 PHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQ 299
P RE + TL + G KV L++G +E + G + + + + D + Q
Sbjct: 82 PEARELVETLREKGFKVVLISGSFEEVLEPFKEL-GDEFMANRAIFEDG-------KFQG 133
Query: 300 VVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQ--GTD 357
+ R+ R K +K F+ +G I+ M GDG D ++AD+GIA+G++ G D
Sbjct: 134 I--------RLRFRDKGEFLKRFR-DGFILAM-GDGYADAKMFERADMGIAVGREIPGAD 183
Query: 358 V----CKEAADMI 366
+ KE D I
Sbjct: 184 LLVKDLKELVDFI 196
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 329 VGMT-------GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
+GMT GDG ND +K A +G+AMG + K+AAD I + +D + + AIE
Sbjct: 209 IGMTREEVIAIGDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMIL--VDDD 371
GDG ND L+ A IG+AMG+ DV K AAD + +D+D
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDED 249
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 22/147 (14%)
Query: 240 PHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQ 299
P V E + L +G ++ + T ++ A AIA + GLDT + D +++ H
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSVERGKPH--PD 164
Query: 300 VVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVND---GVALKKADIGIAMGKQGT 356
+ V + P + I GDGV D G A IG++ G G
Sbjct: 165 MALHVARGLGIPPERCVVI--------------GDGVPDAEMGRAAGMTVIGVSYGVSGP 210
Query: 357 D-VCKEAADMILVDDDFNTIIAAIEEG 382
D + + AD ++ D F + A+ +G
Sbjct: 211 DELMRAGADTVV--DSFPAAVTAVLDG 235
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMIL--VDDD 371
GDG ND L+ A IG+AMG+ DV K AAD + +D+D
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDED 249
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
GDG ND +K A G+A G + K+AAD I + +D + + AIE
Sbjct: 220 GDGYNDLSXIKFAGXGVAXG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|2VOY|L Chain L, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 21
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 422 MQILWINIIMDGPPAQSLG 440
+Q+LW+N++ DG PA +LG
Sbjct: 2 VQLLWVNLVTDGLPATALG 20
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 21 GDGRNSSRIRSKPETGTLLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLYAV 76
G G + I +P T + LE N +IIG+++L T G L AAG +AV
Sbjct: 1297 GKGLSGGTIVVRPTTSSPLE----TNKNTIIGNTVLYGATAGKLFAAGQAGERFAV 1348
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 21 GDGRNSSRIRSKPETGTLLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLYAV 76
G G + I +P T + LE N +IIG+++L T G L AAG +AV
Sbjct: 1297 GKGLSGGTIVVRPTTSSPLE----TNKNTIIGNTVLYGATAGKLFAAGQAGERFAV 1348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,145,036
Number of Sequences: 62578
Number of extensions: 631351
Number of successful extensions: 1331
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 49
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)