RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16789
(608 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 532 bits (1372), Expect = e-179
Identities = 147/583 (25%), Positives = 255/583 (43%), Gaps = 111/583 (19%)
Query: 116 LHRLLEVGCVCNNASIIGD------SLLGQPTEGALLAAGMKFGLY-------------- 155
L L + +CN++S+ + +G+ TE AL K ++
Sbjct: 411 LVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERAN 470
Query: 156 ----AVNEHYVRLKEYPFSSEQKMMAVRVHKIGHNLPSKRDGKM--------ILSQSCS- 202
+ + + FS ++K M+V + + KM ++ + C+
Sbjct: 471 ACNSVIRQLMKKEFTLEFSRDRKSMSV-YCSPAKSSRAAVGNKMFVKGAPEGVIDR-CNY 528
Query: 203 --------------------EYPKFQTLGKGL--VAMAR------------------GSN 222
++ T L +A+A
Sbjct: 529 VRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEY 588
Query: 223 LQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL----DT 278
DL ++G+VG+ DPPR V + +G++V ++TGD + TA AI +G+ +
Sbjct: 589 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE 648
Query: 279 IHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVND 338
+ + +G + D + + ++ F RV P HK IV+ Q+ I MTGDGVND
Sbjct: 649 VADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVND 708
Query: 339 GVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIRNFVRFQLS 398
ALKKA+IGIAMG GT V K A++M+L DD+F+TI+AA+EEG+ I+ N++ F+R+ +S
Sbjct: 709 APALKKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLIS 767
Query: 399 TSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQSLGVEPVDDDVKIQKPRNVKE 458
+++ + I L L +P L +Q+LW+N++ DG PA +LG P D D+ + PR+ KE
Sbjct: 768 SNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKE 827
Query: 459 PMITRALVVNVLMSASIIIVGTLYVF-------------------------------KRE 487
P+I+ L + + T+ +
Sbjct: 828 PLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGL 887
Query: 488 MSDNIVSKRDTTMTFTCFVFFDMFNALSCRSQIKSVFTIGLFTNKMFLFAVCASVVGQLF 547
+ + TM + V +M NAL+ S+ +S+ + + N L ++C S+
Sbjct: 888 DCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFL 947
Query: 548 VIYFPPLQKVFQTEALTINDIAFLTALTSTVFFVSEIKKAIER 590
++Y PL +F+ +AL + + ++ V + EI K I R
Sbjct: 948 ILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIAR 990
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 446 bits (1149), Expect = e-145
Identities = 143/600 (23%), Positives = 226/600 (37%), Gaps = 131/600 (21%)
Query: 116 LHRLLEVGCVCNNASIIGD---------SLLGQPTEGALLAAGMKFGLY--AVNEHYVRL 164
L V +CN A+ ++G +E ALL E + ++
Sbjct: 428 WRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKV 487
Query: 165 KEYPFSSEQKMMAVRVHKIGHNLPSKRDGK----------MILSQSCSEY---------- 204
E PF+S K H L RD + +L + CS
Sbjct: 488 CEIPFNSTNKFQLSI-----HTLEDPRDPRHVLVMKGAPERVLER-CSSILIKGQELPLD 541
Query: 205 ----PKFQTL-----GKGL--VAMAR-------------------GSNLQDLCYMGLVGI 234
FQT G G + + L + GLV +
Sbjct: 542 EQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSM 601
Query: 235 CDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL------------------ 276
DPPR V + + +G++V +VTGD TA AIA+ VG+
Sbjct: 602 IDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVP 661
Query: 277 ------DTIHGKVLSGDQIDQMTEHQLQQVV--NSVTVFYRVTPRHKLTIVKAFQANGVI 328
V++G Q+ M +L + + + VF R +P+ KL IV++ Q G I
Sbjct: 662 VDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAI 721
Query: 329 VGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYN 388
V +TGDGVND ALKKADIG+AMG G+D K AADMIL+DD+F +I+ +E+G+ IF N
Sbjct: 722 VAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDN 781
Query: 389 IRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQSLGVEPVDDDV 448
++ + + L+ +I L+ + + +P PL + IL+I + D P+ SL E + D+
Sbjct: 782 LKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDI 841
Query: 449 KIQKPRNVKEPMIT--RALVVNVLMSASIIIVGTLYVFKREMSDNIVSKRDT-------- 498
+PRN K + + +I + M+
Sbjct: 842 MHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWE 901
Query: 499 ----------------------------TMTFTCFVFFDMFNALSCRSQIKSVFTIGLFT 530
T+ F + + L +++ S F G F
Sbjct: 902 NHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFR 961
Query: 531 NKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFVSEIKKAIER 590
N++ + A+ V F+ Y P + +F + +F EI+K R
Sbjct: 962 NRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVR 1021
Score = 66.9 bits (164), Expect = 1e-11
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 21 GDGRNSSRIRSKPETGTLLEVGCVCNNASIIGD---------SLLGQPTEGALLAAGMKF 71
D + +S L V +CN A+ ++G +E ALL
Sbjct: 414 EDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELT 473
Query: 72 GLY--AVNEHYVRLKEYPFSSEQKMMAV 97
E + ++ E PF+S K
Sbjct: 474 LGNAMGYRERFPKVCEIPFNSTNKFQLS 501
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 408 bits (1050), Expect = e-131
Identities = 120/431 (27%), Positives = 195/431 (45%), Gaps = 65/431 (15%)
Query: 224 QDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL------- 276
DLC++GL+ + DPPR V + + +G+KV +VTGD TA AIA VG+
Sbjct: 586 TDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNET 645
Query: 277 -----------------DTIHGKVLSGDQIDQMTEHQLQQVVNSVT--VFYRVTPRHKLT 317
V+ G + ++ L +++ T VF R +P+ KL
Sbjct: 646 IEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLI 705
Query: 318 IVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIA 377
IV+ Q G IV +TGDGVND ALKKADIG+AMG G+DV K+AADMIL+DD+F +I+
Sbjct: 706 IVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVT 765
Query: 378 AIEEGKGIFYNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQ 437
+EEG+ IF N++ + + L+++I ++ + + +P PL + IL I++ D PA
Sbjct: 766 GVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLGTDMVPAI 825
Query: 438 SLGVEPVDDDVKIQKPRNVKEPMIT--RALVVNVLMSASIIIVGTLYVFKREMSDNIVSK 495
SL E + D+ ++PRN K + R + + I +G + + +++N
Sbjct: 826 SLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLP 885
Query: 496 RD------------------------------------TTMTFTCFVFFDMFNALSCRSQ 519
D T F V + + C+++
Sbjct: 886 MDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWADLIICKTR 945
Query: 520 IKSVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVF 579
S+F G NK+ +F + F+ Y P + L + + +F
Sbjct: 946 RNSIFQQG-MKNKILIFGLFEETALAAFLSYCPGTDVALRMYPLKPSWWFCAFPYSLIIF 1004
Query: 580 FVSEIKKAIER 590
E+++ I R
Sbjct: 1005 LYDEMRRFIIR 1015
Score = 71.5 bits (176), Expect = 5e-13
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 116 LHRLLEVGCVCNNASIIGD---------SLLGQPTEGALLAAGMKFGLY--AVNEHYVRL 164
L + +CN A S+ G +E ALL + + ++
Sbjct: 423 WSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKI 482
Query: 165 KEYPFSSEQKMMAVRVHKIGHNLPSKR 191
E PF+S K +H+ + S+
Sbjct: 483 VEIPFNSTNKYQLS-IHENEKSSESRY 508
Score = 67.3 bits (165), Expect = 1e-11
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 11/88 (12%)
Query: 21 GDGRNSSRIRSKPETGTLLEVGCVCNNASIIGD---------SLLGQPTEGALLAAGMKF 71
+ ++ ++ L + +CN A S+ G +E ALL
Sbjct: 409 ENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELC 468
Query: 72 GLY--AVNEHYVRLKEYPFSSEQKMMAV 97
+ + ++ E PF+S K
Sbjct: 469 CGSVQGMRDRNPKIVEIPFNSTNKYQLS 496
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 347 bits (893), Expect = e-109
Identities = 100/547 (18%), Positives = 195/547 (35%), Gaps = 70/547 (12%)
Query: 93 KMMAVRCIPKEGSSCDVDTRFFFLHRLLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKF 152
K+ G + L+ C+ + + A L + +
Sbjct: 387 KLSLHDPYTVAGVDPE---------DLMLTACLAASR----KKKGIDAIDKAFLKSLKYY 433
Query: 153 GLY-AVNEHYVRLKEYPFSSEQKMMAVRVHKIGHNLPSKRDGKM----------ILSQSC 201
+V Y L+ +PF K + V G+ +L
Sbjct: 434 PRAKSVLSKYKVLQFHPFDPVSKKVVAVVES--------PQGERITCVKGAPLFVLKTVE 485
Query: 202 SEYP-----------KFQTLG-KGL--VAMARGSNLQDLCYMGLVGICDPPRPHVRECMS 247
++P K +G + +AR +G++ DPPR + +
Sbjct: 486 EDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVC 545
Query: 248 TLLQSGVKVKLVTGDGQETATAIASMVGLDT--IHGKVLSGDQIDQMTEHQLQQVVNSVT 305
G+ +K++TGD A + +GL T + + L M ++ V +
Sbjct: 546 EAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAAD 605
Query: 306 VFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADM 365
F V P+HK +V+ Q G +V MTGDGVND +LKKAD GIA+ +D + AAD+
Sbjct: 606 GFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEG-SSDAARSAADI 664
Query: 366 ILVDDDFNTIIAAIEEGKGIFYNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQIL 425
+ + II A++ + IF+ + +V ++++ SI + L + + LN ++
Sbjct: 665 VFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAI-LNRSLNIELVV 723
Query: 426 WINIIMDGPPAQSLGVEPVDDDVKIQKPRNVKEPMITRALVVNVLMSA--SIIIVGTLYV 483
+I I D ++ + Q P P + V+ ++ A + I V T+Y
Sbjct: 724 FIAIFADV-ATLAIAYDNAPYS---QTPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYA 779
Query: 484 FKREMSDNIVSKRDTTMTFTCFVFFDMFNALSCRSQIKSVFTIGLFTNKMFLFAVCASVV 543
+ F + + R+ G F + + + + ++
Sbjct: 780 QGENGGIVQNFGNMDEVLFLQISLTENWLIFITRAN-------GPFWSSIPSWQLSGAIF 832
Query: 544 GQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFVSEIKKAI-------ERICERKC 596
+ + F+ +I + + + +F + I + + K
Sbjct: 833 LVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSVGFDNLMHGKS 892
Query: 597 LRSSKKQ 603
+ ++KQ
Sbjct: 893 PKGNQKQ 899
Score = 41.9 bits (99), Expect = 6e-04
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 38 LLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLY-AVNEHYVRLKEYPFSSEQKMMA 96
L+ C+ + + A L + + +V Y L+ +PF K +
Sbjct: 404 LMLTACLAASR----KKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVV 459
Query: 97 VRCIPKEG 104
+G
Sbjct: 460 AVVESPQG 467
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 343 bits (882), Expect = e-107
Identities = 103/528 (19%), Positives = 189/528 (35%), Gaps = 59/528 (11%)
Query: 117 HRLLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLYAVNEHYVRLKEYPFSSEQKMM 176
++L + + D + A++ + PF+ K
Sbjct: 356 DQVLLFAAMASRVEN-QD-----AIDAAMVGMLADPKE--ARAGIREVHFLPFNPVDKRT 407
Query: 177 AVRVHKIGHNL---------------PSKRDGKMILSQSCSEYPK--FQTLG---KGLVA 216
A+ N + D + +Y + ++L + +
Sbjct: 408 ALTYIDGSGNWHRVSKGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPE 467
Query: 217 MARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL 276
+ S ++GL+ + DPPR E + L GV VK++TGD +G+
Sbjct: 468 KTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGM 527
Query: 277 DTIH---GKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTG 333
T +L + + +++++ F V P HK IVK Q IVGMTG
Sbjct: 528 GTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTG 587
Query: 334 DGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIRNFV 393
DGVND ALKKADIGIA+ TD + A+D++L + + II+A+ + IF ++N+
Sbjct: 588 DGVNDAPALKKADIGIAVAD-ATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYT 646
Query: 394 RFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQSLGVEPVDDDVKIQKP 453
+ +S +I + L L+ +A +L I I+ DG ++ + V P
Sbjct: 647 IYAVSITIRIVFGFMLIALIW-EFDFSAFMVLIIAILNDG-TIMTISKDRVKPS---PTP 701
Query: 454 RNVKEPMI-TRALVVNVLMSASIIIV--GTLYVFKREMSDNIVSKRDT-----TMTFTCF 505
+ K I +V+ + +I + + S RD +
Sbjct: 702 DSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQV 761
Query: 506 VFFDMFNALSCRSQIKSVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTI 565
RS +S + + + + A ++ L +Y + + +
Sbjct: 762 SIISQALIFVTRS--RSWSFVERPGALLMIAFLIAQLIATLIAVY--ANWEFAKIRGIGW 817
Query: 566 NDIAFLTALTSTVFFVSEIKKAIER----------ICERKCLRSSKKQ 603
+ + +F ++ K R + E K + KK
Sbjct: 818 GWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKD 865
Score = 42.7 bits (101), Expect = 3e-04
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 8/67 (11%)
Query: 38 LLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLYAVNEHYVRLKEYPFSSEQKMMAV 97
+L + + D + A++ + PF+ K A+
Sbjct: 358 VLLFAAMASRVEN-QD-----AIDAAMVGMLADPKE--ARAGIREVHFLPFNPVDKRTAL 409
Query: 98 RCIPKEG 104
I G
Sbjct: 410 TYIDGSG 416
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 134 bits (339), Expect = 9e-36
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 28/161 (17%)
Query: 230 GLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQI 289
I D PRP++++ + L G+K+ +++GD ++ ++ + + + +
Sbjct: 129 ASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNLS----- 183
Query: 290 DQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGI 349
P K+ I++ + NG V M GDGVND AL AD+ +
Sbjct: 184 ----------------------PEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 350 AMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIR 390
AMG G D+ K AD+ILV +D T++ I+ K + I
Sbjct: 222 AMGN-GVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIP 261
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 125 bits (316), Expect = 2e-32
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + GK +V + + + G++ + D RP RE +S L G+K ++TGD +
Sbjct: 118 KLKQQGKTVVFILKNGEV-----SGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRF 172
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
A +A +GLD +VL P K VK Q
Sbjct: 173 VAKWVAEELGLDDYFAEVL---------------------------PHEKAEKVKEVQQK 205
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V M GDGVND AL +AD+GIA+G GTDV E AD++LV +D + A +E +
Sbjct: 206 YV-TAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKT 263
Query: 386 FYNIR 390
+
Sbjct: 264 YSKFH 268
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 125 bits (316), Expect = 3e-32
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 230 GLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQI 289
G++ + D + + + L + G+KV ++TGD +A AI+ + LD + +VL
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVL----- 210
Query: 290 DQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGI 349
P K VK QA V V GDG+ND AL +AD+GI
Sbjct: 211 ----------------------PHQKSEEVKKLQAKEV-VAFVGDGINDAPALAQADLGI 247
Query: 350 AMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIR 390
A+G G+DV E+ D++L+ DD ++AAI+ + I+
Sbjct: 248 AVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 131 bits (331), Expect = 4e-32
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
+ + G ++ MA + L+ + DP + E + L QSG+++ ++TGD +
Sbjct: 528 ELRGKGASVMFMAVDGKT-----VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKR 582
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
TA A+A +G+ + +++ P K IV +
Sbjct: 583 TAEAVAGTLGIKKVVAEIM---------------------------PEDKSRIVSELKDK 615
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
G+IV M GDGVND AL KADIGIAMG GTDV E+A + L+ D I A +
Sbjct: 616 GLIVAMAGDGVNDAPALAKADIGIAMGT-GTDVAIESAGVTLLHGDLRGIAKARRLSEST 674
Query: 386 FYNIR 390
NIR
Sbjct: 675 MSNIR 679
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 128 bits (323), Expect = 3e-31
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR + G++ + D + + + L + G+KV ++TGD
Sbjct: 431 KLEREAKTAVIVARNGRV-----EGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 485
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 486 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 518
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 519 EV-VAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 576
Query: 386 FYNIR 390
I+
Sbjct: 577 MSKIK 581
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 124 bits (314), Expect = 5e-30
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 34/185 (18%)
Query: 206 KFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQE 265
K + K V +AR + G++ + D + + + L + G+KV ++TGD
Sbjct: 509 KLEREAKTAVIVARNGRV-----EGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWR 563
Query: 266 TATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQAN 325
+A AI+ + LD + +VL P K VK QA
Sbjct: 564 SAEAISRELNLDLVIAEVL---------------------------PHQKSEEVKKLQAK 596
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGI 385
V V GDG+ND AL +AD+GIA+G G+DV E+ D++L+ DD ++AAI+ +
Sbjct: 597 EV-VAFVGDGINDAPALAQADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQLSRKT 654
Query: 386 FYNIR 390
I+
Sbjct: 655 MSKIK 659
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 58.8 bits (143), Expect = 2e-10
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 118 RLLEVGCVCNNA-SIIGDSLLGQPTEGALLAAGMKFGLYAVNEHYVRLKEYPFSSEQKMM 176
R+L + ++ + + + + A+L + ++ + ++ E PF E++ M
Sbjct: 17 RVLHSAWLNSHYQTGLKN-----LLDTAVLEGTDEESARSLASRWQKIDEIPFDFERRRM 71
Query: 177 AVRVHKIGHN 186
+V V
Sbjct: 72 SV-VVAENTE 80
Score = 56.4 bits (137), Expect = 2e-09
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 34 ETGTLLEVGCVCNNA-SIIGDSLLGQPTEGALLAAGMKFGLYAVNEHYVRLKEYPFSSEQ 92
+ +L + ++ + + + + A+L + ++ + ++ E PF E+
Sbjct: 14 TSERVLHSAWLNSHYQTGLKN-----LLDTAVLEGTDEESARSLASRWQKIDEIPFDFER 68
Query: 93 KMMAV 97
+ M+V
Sbjct: 69 RRMSV 73
Score = 30.6 bits (70), Expect = 0.88
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 224 QDLCYMGLVGICDPPRPH 241
DL G + D H
Sbjct: 152 SDLILEGYIAFLDHHHHH 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 98/682 (14%), Positives = 181/682 (26%), Gaps = 211/682 (30%)
Query: 5 DLIRLEFRPSFLEKVH-GDGRNSSR-IRSKPETGTLLEVGCVCNNASIIGDSLLGQPTEG 62
D++ + F +F++ D ++ + I SK E ++ + + +LL + E
Sbjct: 20 DILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 63 ALLAAGMKFGLYAVNEHYVRLKEYPFSSEQKMMAVRCIPKEGSSCDVDTRFFFLHRLLEV 122
KF V E V Y F + TR + R
Sbjct: 79 V-----QKF----VEE--VLRINYKFLMSP--IKTEQRQPSM-----MTRMYIEQR---- 116
Query: 123 GCVCNNASIIGDSLLGQPTEGALLAAGMKFGLYAVN--EHYVRLKEYPFSSEQKMMAVRV 180
D L F Y V+ + Y++L++ + V +
Sbjct: 117 -----------DRLYNDNQ---------VFAKYNVSRLQPYLKLRQA-LLELRPAKNVLI 155
Query: 181 H-KIGHNLPSKRDGKMIL-SQSCSEYPKFQ----------TLGKGLVAMARGSNLQDLCY 228
+G GK + C Y K Q L LQ L Y
Sbjct: 156 DGVLGS-------GKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 229 M---GLVGICDPP-----RPH-VRECMSTLLQS------------------------GVK 255
D R H ++ + LL+S K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 256 VKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVT---- 311
+ L T + T H + +T + ++ +
Sbjct: 268 ILLTTRF----KQVTDFLSAATTTH--ISLDHHSMTLTPDE------VKSLLLKYLDCRP 315
Query: 312 ---PRHKLTIVKAFQANGVIVGMTGDGVNDGVA----LKKADIGIAMGKQGTDVCKEAAD 364
PR LT N + + + + DG+A K +
Sbjct: 316 QDLPREVLTT------NPRRLSIIAESIRDGLATWDNWKHVNC----------------- 352
Query: 365 MILVDDDFNTIIAAI------EEGKGIFYNIRNFVRFQLSTSIAALSLIALATLLRIPNP 418
D TII + E + +F F S I P
Sbjct: 353 -----DKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHI----------------P 388
Query: 419 LNAMQILWINI-------IMDGPPAQSLGVEPVDDDVKIQKPRNVKEPMITRALVVNVLM 471
+ ++W ++ +++ SL V+ K + P I L V +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQ---PKESTISIPSIYLELKVKLEN 441
Query: 472 SASI--IIVGTLYVFKREMSDNIVSKRDTTMTFTCFVFFDMFNALSCRSQIKSVFTIGLF 529
++ IV Y + + + F + + N + ++F + +F
Sbjct: 442 EYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRM-VF 497
Query: 530 TNKMFLFA-VCASVVGQLFVIYFPPLQKVFQT--EALTINDIAFLTALTSTVFFVSEIKK 586
+ FL + + + + ND + L V+ I
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERL------VNAILD 550
Query: 587 AIERICERKCLRSSKKQSMDFV 608
+ + E + S + D +
Sbjct: 551 FLPK-IEENLICS---KYTDLL 568
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 5e-06
Identities = 84/569 (14%), Positives = 145/569 (25%), Gaps = 250/569 (43%)
Query: 5 DLIRL---EFRPSFLEK--VHGDGRNSSRIRS--KPETGTLLEVGCVCNN---ASIIGDS 54
++ L EF +LE +H + + TL++ + N A I+
Sbjct: 82 QVLNLCLTEFENCYLEGNDIH------ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 55 LLGQPTEGALL--AAGMKFGLYAV------NEHYVR-LKE----YPFSSEQ--KMMAVRC 99
+ + AL L A+ + Y L++ Y K A
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 100 IPKEGSSCDVDTRFFF-----LHRLLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGL 154
E +D F + LE N S P + LL+
Sbjct: 196 --SELIRTTLDAEKVFTQGLNILEWLE------NPS-------NTPDKDYLLSI------ 234
Query: 155 YAVNEHYVRLKEYPFSSEQKMMAVRVHKIGHNLPSKRDGKMILSQSCSEYPKFQTLGKGL 214
P S P +I G+
Sbjct: 235 -------------PIS----------------CP------LI----------------GV 243
Query: 215 VAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMV 274
+ +A Y+ + +R + +G LVT A AIA
Sbjct: 244 IQLA--------HYVVTAKLLGFTPGELRSYLKGA--TGHSQGLVT------AVAIAE-- 285
Query: 275 GLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTV-FY------RVTPRHKL--TIVKAFQAN 325
D + V ++TV F+ P L +I++ N
Sbjct: 286 -----------TDSWESF----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 326 GVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDD-DFNTIIAAIEEGKG 384
+G + M+ + + + + +
Sbjct: 331 N---------------------------EGV-----PSPMLSISNLTQEQVQDYVNK--- 355
Query: 385 IFYNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQSL----- 439
N Q+ +SL+ N + N+++ GPP QSL
Sbjct: 356 --TNSHLPAGKQVE-----ISLV------------NGAK----NLVVSGPP-QSLYGLNL 391
Query: 440 -----GVEPVDDDVKIQKPRNVKEPMI-TRALVVNV------LMSASIIIVGTLY----- 482
D +I P + ++ R L V L+ AS +I L
Sbjct: 392 TLRKAKAPSGLDQSRI--PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 483 ---------VFK-------REMSDNIVSK 495
V+ R +S +I +
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 45.8 bits (108), Expect = 4e-05
Identities = 71/429 (16%), Positives = 116/429 (27%), Gaps = 210/429 (48%)
Query: 19 VHGDGRNSSRIRSKPETGTLLEVGCVCNNASIIGDSLL-GQPTEGALLAAGMKFGLYAVN 77
+H G RIR N +++I ++++ G+ + +N
Sbjct: 1674 IHFGGEKGKRIRE--------------NYSAMIFETIVDGKLKTEKIFK--------EIN 1711
Query: 78 EHYVRLKEYPFSSEQKMMAVRCIPKEGSSCDVDTRFFFLHRLLEVGCVCNNASIIGDSLL 137
EH Y F SE+ +++ T+F
Sbjct: 1712 EH---STSYTFRSEKGLLS-------------ATQF---------------T-------- 1732
Query: 138 GQPTEGALLAAGMKFGLYAVNEHYVRLKEYPFSSEQKMMAVRVHKIGHNLPSKRDGKMIL 197
QP AL A E LK A GH+L G
Sbjct: 1733 -QP---ALTLME-----KAAFED---LKSKGLIPADATFA------GHSL-----G---- 1765
Query: 198 SQSCSEYPKFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSGVKVK 257
EY L ++A +++ L +V R +Q V
Sbjct: 1766 -----EYA-------ALASLADVMSIESLVE--VV--------FYR---GMTMQVAVP-- 1798
Query: 258 LVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLT 317
E + M+ ++ G+V + ++ LQ VV V
Sbjct: 1799 -----RDELGRSNYGMIAIN--PGRVAAS-----FSQEALQYVVERV------------- 1833
Query: 318 IVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIA 377
GK+ + E N
Sbjct: 1834 ----------------------------------GKRTGWLV-EIV---------N---- 1845
Query: 378 AIEEGKGIFYNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMDGPPAQ 437
YN+ N Q +AA L AL T+ + LN +++ I+II +
Sbjct: 1846 ---------YNVEN---QQY---VAAGDLRALDTVTNV---LNFIKLQKIDII---ELQK 1884
Query: 438 SLGVEPVDD 446
SL +E V+
Sbjct: 1885 SLSLEEVEG 1893
Score = 30.8 bits (69), Expect = 1.9
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 520 IKSVFTIGLFTNKMF-------LFAVCASVVGQLFVI---------YFPPLQKVFQTEAL 563
IK+ T + + F LF QL I YF L+ ++QT +
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 564 TINDIAFLTALTSTVFFVSEIKKAIERICER 594
+ D + T+ + E++ +
Sbjct: 183 LVGD--LIKFSAETLSELIRTTLDAEKVFTQ 211
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 46.3 bits (110), Expect = 9e-06
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIAS-MVGLDTIHGKVL--SGDQIDQMT 293
R RE ++ + + + +++G + +V D I+ D I
Sbjct: 77 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDW 136
Query: 294 EHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGK 353
H + ++ K +++ + M GD V D A K +D+ A
Sbjct: 137 PHSCKGTCSNQCGCC------KPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFA-RD 189
Query: 354 QGTDVCKEAADMILVDDDFNTIIAAIEE 381
+ C+E L DF I IE
Sbjct: 190 YLLNECREQNLNHLPYQDFYEIRKEIEN 217
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 45.1 bits (107), Expect = 4e-05
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 16/149 (10%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P + + + G K +++G + + LD + + + +T++
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTV-EIRDNVLTDNI 237
Query: 297 LQQVVNSVTVFYRVTPRHKLTIVKAFQA-NGVIVGMT---GDGVNDGVALKKADIGIAMG 352
++N+ K + A + GDG ND L+ A GIA
Sbjct: 238 TLPIMNAAN---------KKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAWK 288
Query: 353 KQGTDVCKEAADMILVDDDFNTIIAAIEE 381
V +E + F ++ IE+
Sbjct: 289 --AKPVVREKIHHQINYHGFELLLFLIED 315
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 43.8 bits (104), Expect = 5e-05
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 17/146 (11%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P E + L + +V +++ E + + +G T+ H+
Sbjct: 69 KPLEGAVEFVDWL-RERFQVVILSDTFYEFSQPLMRQLGFPTLLC-------------HK 114
Query: 297 LQQVVNSVTVFYRVTPR-HKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQG 355
L+ + V Y++ + K V AF++ V GD ND L +A GI
Sbjct: 115 LEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILF--HA 172
Query: 356 TDVCKEAADMILVDDDFNTIIAAIEE 381
+ + + +
Sbjct: 173 PENVIREFPQFPAVHTYEDLKREFLK 198
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 42.6 bits (101), Expect = 2e-04
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 33/156 (21%)
Query: 240 PHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIH-----------GKVLSGDQ 288
P +RE +S L + V+V L++G + +AS + + + G+ D+
Sbjct: 89 PGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDE 148
Query: 289 IDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVI--VGMTGDGVNDGVALKKAD 346
E K ++K + + M GDG D A AD
Sbjct: 149 TQPTAESG-----------------GKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPAD 191
Query: 347 IGIAM-GKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
I G K+ A + DF ++ +EE
Sbjct: 192 AFIGFGGNVIRQQVKDNAKWYI--TDFVELLGELEE 225
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 41.4 bits (98), Expect = 3e-04
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 18/149 (12%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P E +S L + KV +G ++ LD L + D +
Sbjct: 75 PLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTL-IVENDALNGLV 133
Query: 297 LQQVVNSVTVFYRVTPRHKLTIVKAFQA-NGVIVGMT---GDGVNDGVALKKADIGIA-M 351
++ S K ++ Q + T GDG ND K A I IA
Sbjct: 134 TGHMMFS---------HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFN 184
Query: 352 GKQGTDVCKEAADMILVDDDFNTIIAAIE 380
K +V K+ A + + D I IE
Sbjct: 185 AK---EVLKQHATHCINEPDLALIKPLIE 210
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 40.9 bits (96), Expect = 0.001
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P P + E ++TL G KV + +G + + + LD L ++T
Sbjct: 178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTL-EIVSGKLTGQV 236
Query: 297 LQQVVNSVTVFYRVTPRHKLTIVKAFQA-NGVIVGMT---GDGVNDGVALKKADIGIAMG 352
L +VV++ T K I+ V + T GDG ND V + A +G+A
Sbjct: 237 LGEVVSAQT---------KADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAYH 287
Query: 353 KQGTDVCKEAADMILVDDDFNTII 376
+ A + ++
Sbjct: 288 --AKPKVEAKAQTAVRFAGLGGVV 309
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 40.2 bits (94), Expect = 0.002
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P R + TL + G +V+G + +A + LD + L +T
Sbjct: 256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANEL-EIVDGTLTGRV 314
Query: 297 LQQVVNSVTVFYRVTPRHKLTIVKAFQA-NGVIVGMT---GDGVNDGVALKKADIGIAM- 351
+ +++ K T ++ F GV + T GDG ND L A +GIA
Sbjct: 315 VGPIIDR---------AGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFN 365
Query: 352 GKQGTDVCKEAADMILVDDDFNTII 376
K +E AD L +T++
Sbjct: 366 AK---PALREVADASLSHPYLDTVL 387
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 39.1 bits (92), Expect = 0.002
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND + TD K +D + I +
Sbjct: 176 GDSNNDMPMFQLPVRKACPA-NATDNIKAVSDFVSDYSYGEEIGQIFKH 223
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 39.0 bits (92), Expect = 0.003
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI--LVDDDFNTIIAAIEEGKGIFYNIR 390
GDG+ND L G+AMG + K AD + VD + GI+Y ++
Sbjct: 206 GDGLNDIEMLSFVGTGVAMG-NAHEEVKRVADFVTKPVDKE------------GIWYGLK 252
Query: 391 NFV 393
Sbjct: 253 QLQ 255
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 38.3 bits (90), Expect = 0.004
Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQ 296
P E + L G V +V+G I +GLD L + ++T
Sbjct: 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRL-IVKDGKLTGDV 134
Query: 297 LQQVVNSVTVFYRVTPRHKLTIVKAFQA-NGVIVGMT---GDGVNDGVALKKADIGIAM- 351
+V+ K I++ G+ + T GDG ND KKA + IA
Sbjct: 135 EGEVLKENA---------KGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAFC 185
Query: 352 GKQGTDVCKEAADMILVDDDFNTIIAAIE 380
K + KE AD+ + D I+ I+
Sbjct: 186 AK---PILKEKADICIEKRDLREILKYIK 211
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 38.3 bits (90), Expect = 0.004
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI--LVDDDFNTIIAAIEEGKGIFYNIR 390
GDG ND L+ A IG+AMG Q + K AAD + +D+D GI ++
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTAPIDED------------GISKAMK 256
Query: 391 NFV 393
+F
Sbjct: 257 HFG 259
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 37.1 bits (87), Expect = 0.011
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 333 GDGVNDGVA-LKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GDG ND + K +A+ Q + KE AD + + AI
Sbjct: 176 GDGEND-LDAFKVVGYKVAVA-QAPKILKENADYVTKKEYGEGGAEAIYH 223
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 36.4 bits (85), Expect = 0.018
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI--LVDDDFNTIIAAIEEGKGIFYNIR 390
GDG ND LK A IG+AMG ++ + AD + VD+ G++ ++
Sbjct: 217 GDGGNDIPMLKAAGIGVAMG-NASEKVQSVADFVTDTVDNS------------GLYKALK 263
Query: 391 NFV 393
+F
Sbjct: 264 HFG 266
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 35.7 bits (83), Expect = 0.031
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND L A+ TD K A +L +A + +
Sbjct: 247 GDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVAYLLK 294
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 35.5 bits (81), Expect = 0.045
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 238 PRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLD---TIHGKVLSGDQIDQMTE 294
P V+ ++ L +G ++ + TG +GL + D ++
Sbjct: 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENM 275
Query: 295 HQLQQ--------VVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKAD 346
+ + + + N V + GD + D ++ +K
Sbjct: 276 YPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIG 335
Query: 347 ---IGIAMGKQGTDVCKE----AADMILVDDDFNTIIAAIEE 381
IG G +G D E AD ++ + + ++
Sbjct: 336 ATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVLDN 375
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 34.8 bits (80), Expect = 0.057
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND L+ G + T K ++I + I +++
Sbjct: 234 GDSGNDVRMLQTVGNGYLLK-NATQEAKNLHNLITDSEYSKGITNTLKK 281
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 34.5 bits (80), Expect = 0.079
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI 366
GDG ND V + +D+ IAM K+ A I
Sbjct: 223 GDGQNDIVMFQASDVTIAMKN-SHQQLKDIATSI 255
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 33.3 bits (77), Expect = 0.17
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GDG ND +K A +G+AMG + K+AAD I + +D + + AIE
Sbjct: 220 GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYITLTNDEDGVAEAIER 267
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 32.9 bits (76), Expect = 0.22
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND +K A +G+AMG D KEAA + + + N + AAI +
Sbjct: 220 GDQGNDLTMIKYAGLGVAMG-NAIDEVKEAAQAVTLTNAENGVAAAIRK 267
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 32.5 bits (75), Expect = 0.36
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND ++ A +G+A+ KE A+ + + + + AIE+
Sbjct: 221 GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFVTKSNLEDGVAFAIEK 268
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 31.9 bits (73), Expect = 0.51
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI 366
GD +ND L+ A G+AMG + K AD +
Sbjct: 239 GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAV 271
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 31.8 bits (73), Expect = 0.51
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI 366
G +D ++ A +G+AMG K AD +
Sbjct: 225 GHQYDDLPMIELAGLGVAMG-NAVPEIKRKADWV 257
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 31.3 bits (72), Expect = 0.70
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI 366
GD ND ++A + +AM + KEA+D++
Sbjct: 213 GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIV 245
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 31.2 bits (71), Expect = 0.76
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 239 RPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHG 281
+ + L +G LVT IA G+ +
Sbjct: 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIA 136
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQ 291
P E + TL + +K + T G +TAT + LD +++ D +
Sbjct: 91 IALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKINIVTRDDVSY 145
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S
genomics, national institute of allergy and infectious
DISE (niaid); 1.70A {Francisella tularensis subsp}
Length = 219
Score = 30.7 bits (70), Expect = 1.1
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 240 PHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQ 299
++E + L G ++ + +G E+ A + + + + + + I +
Sbjct: 85 DGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPREN--IFAVETIWNSDGSFKEL 142
Query: 300 VVNSVTVFYRVTPRHKLTIVKAF-QANGVIVG---MTGDGVNDGVALKK--ADIGIAMGK 353
++ + + AF +A G+I G GDG D +K A IA +
Sbjct: 143 DNSNGA---------CDSKLSAFDKAKGLIDGEVIAIGDGYTDYQLYEKGYATKFIAYME 193
Query: 354 QGT-DVCKEAADMILVD-DDFNTII 376
+ + + + + ++I
Sbjct: 194 HIEREKVINLSKYVARNVAELASLI 218
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 228 YMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGL-DTIHGKVLSG 286
Y G++ D + R ++ ++GV +++ D A + + +LSG
Sbjct: 9 YAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSG 68
Query: 287 D 287
+
Sbjct: 69 E 69
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 228 YMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLD 277
++ P V+E +++L + G+K+ TG +E +A L
Sbjct: 94 LFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ 143
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 30.2 bits (69), Expect = 1.9
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILV----DDD 371
GDG+ND L A G M K+ + V DD
Sbjct: 232 GDGMNDAEMLSMAGKGCIMA-NAHQRLKDLHPELEVIGSNADD 273
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 30.0 bits (67), Expect = 2.0
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEG 382
GDG ND L+ D + + + L D+D + EG
Sbjct: 215 GDGPNDAPLLEVMDYAVIVKGLNREGVH------LHDEDPARVWRTQREG 258
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 29.4 bits (65), Expect = 3.0
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVD 369
GD ND + D +G + + +I V
Sbjct: 203 GDSYNDFPMFEVVDKVFIVGSLKHKKAQNVSSIIDVL 239
>3qns_A DYP peroxidase; lignan, heme, enzyme, oxidoreductase; HET: HEM SO4;
1.40A {Rhodococcus jostii RHA1} PDB: 3qnr_A* 3ved_A*
3vec_A* 3vef_A* 3vee_A* 3veg_A*
Length = 353
Score = 29.6 bits (66), Expect = 3.0
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 544 GQLFVIY-------FPPLQKVFQTEALTIND--IAFLTALTSTVFFV 581
G F+ Y L+++F E D + F TA T T+FFV
Sbjct: 261 GTYFIGYAKDPAVTELMLRRMFLGEPPGNYDRVLDFSTAATGTLFFV 307
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 29.5 bits (66), Expect = 3.4
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLD 277
P +E L+ G+KV TG G
Sbjct: 111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQ 151
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 28.8 bits (64), Expect = 5.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 333 GDGVNDGVALKKADIGIAMG 352
GD +ND + D+ + +G
Sbjct: 201 GDSLNDLPLFRAVDLAVYVG 220
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 29.2 bits (66), Expect = 5.4
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 331 MTGDGVNDGVA--LKKADIGIAMGKQGTDVCKEAADMILV--DDDFNTIIAAIEEGKGIF 386
TG G+ V + A+ + D + +++ D+ I+A + GI
Sbjct: 242 DTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIM 301
Query: 387 YNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAM 422
+R QL S+A +++ L I PL +
Sbjct: 302 GELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKV 337
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 27.6 bits (61), Expect = 9.1
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 237 PPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVG 275
P + + L G+ + + +T +A+ V
Sbjct: 36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPVN 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.401
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,143,557
Number of extensions: 569637
Number of successful extensions: 1356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 70
Length of query: 608
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 509
Effective length of database: 3,937,614
Effective search space: 2004245526
Effective search space used: 2004245526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.0 bits)