RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16789
(608 letters)
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 167 bits (423), Expect = 5e-46
Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 31/249 (12%)
Query: 373 NTIIAAIEEGKGIFYNIRNFVRFQLSTSIAALSLIALATLLRIPNPLNAMQILWINIIMD 432
++ + G+ I+ N++ F+R+ +S+++ + I L L +P L +Q+LW+N++ D
Sbjct: 219 RSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTD 278
Query: 433 GPPAQSLGVEPVDDDVKIQKPRNVKEPMITRALVVNVLMSASIIIVGTLYVF-------- 484
G PA +LG P D D+ + PR+ KEP+I+ L + + T+
Sbjct: 279 GLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAE 338
Query: 485 -----------------------KREMSDNIVSKRDTTMTFTCFVFFDMFNALSCRSQIK 521
+ + + TM + V +M NAL+ S+ +
Sbjct: 339 DGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQ 398
Query: 522 SVFTIGLFTNKMFLFAVCASVVGQLFVIYFPPLQKVFQTEALTINDIAFLTALTSTVFFV 581
S+ + + N L ++C S+ ++Y PL +F+ +AL + + ++ V +
Sbjct: 399 SLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGL 458
Query: 582 SEIKKAIER 590
EI K I R
Sbjct: 459 DEILKFIAR 467
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 134 bits (338), Expect = 2e-37
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Query: 225 DLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDT----IH 280
D DPPR V + +G++V ++TGD + TA AI +G+ +
Sbjct: 8 DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67
Query: 281 GKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGV 340
+ +G + D + + ++ F RV P HK IV+ Q+ I MTGDGVND
Sbjct: 68 DRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAP 127
Query: 341 ALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEG 382
ALKKA+IGIAMG GT V K A++M+L DD+F+TI+AA+EEG
Sbjct: 128 ALKKAEIGIAMGS-GTAVAKTASEMVLADDNFSTIVAAVEEG 168
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 104 bits (259), Expect = 1e-24
Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 43/301 (14%)
Query: 119 LLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLY--AVNEHYVRLKEYPFSSEQKMM 176
+L + + I+ L A + L ++ + + +
Sbjct: 80 MLFIVFSIHLIDIL--KKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFL 137
Query: 177 AVRVHKIGHNLPSKRDGKMILSQSCSEYPKFQTLG-------KGLVAMARGSNL------ 223
V +N+ + + S+ F G + GS L
Sbjct: 138 DN-VKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEK 196
Query: 224 ---QDLCYMGLVGICDP--PRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDT 278
+ G + P V+ ++ L +G ++ + TG +GL
Sbjct: 197 KIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLP 256
Query: 279 IHGK--VLSGDQIDQMTEHQLQQ---------VVNSVTVFYRVTPRHKLTIVKAFQANGV 327
+ + + + Q + + N
Sbjct: 257 YFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKD 316
Query: 328 IVGMTGDGVNDGVALKKAD---IGIAMGKQGTDVCKE----AADMILVDDDFNTIIAAIE 380
V + GD + D ++ +K IG G +G D E AD ++ + + ++
Sbjct: 317 DVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVLD 374
Query: 381 E 381
Sbjct: 375 N 375
Score = 37.9 bits (87), Expect = 0.003
Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 4/74 (5%)
Query: 38 LLEVGCVCNNASIIGDSLLGQPTEGALLAAGMKFGLY--AVNEHYVRLKEYPFSSEQKMM 95
+L + + I+ L A + L ++ + + +
Sbjct: 80 MLFIVFSIHLIDIL--KKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFL 137
Query: 96 AVRCIPKEGSSCDV 109
+ K +
Sbjct: 138 DNVKVGKNNIYAAL 151
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 94.0 bits (233), Expect = 2e-23
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 225 DLCYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVL 284
D G D + + + L + G+KV ++TGD +A AI+ + LD +
Sbjct: 9 DKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVI---- 64
Query: 285 SGDQIDQMTEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKK 344
V P K VK QA V V GDG+ND AL +
Sbjct: 65 -----------------------AEVLPHQKSEEVKKLQAKEV-VAFVGDGINDAPALAQ 100
Query: 345 ADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIE 380
AD+GIA+G G+DV E+ D++L+ DD ++AAI+
Sbjct: 101 ADLGIAVGS-GSDVAVESGDIVLIRDDLRDVVAAIQ 135
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 87.7 bits (216), Expect = 3e-20
Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 6/198 (3%)
Query: 194 KMILSQSCSEYPKFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTLLQSG 253
+ S+ + + + S +++ L R RE ++ + +
Sbjct: 34 MALKDGVLSKTLSIKEGVGRMFGLLPSSLKEEITSFVLEDAK--IREGFREFVAFINEHE 91
Query: 254 VKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPR 313
+ +++G + + + + +
Sbjct: 92 IPFYVISGGMDFFVYPLLEGIVEKDR---IYCNHASFDNDYIHIDWPHSCKGTCSNQCGC 148
Query: 314 HKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFN 373
K +++ + M GD V D A K +D+ A + C+E L DF
Sbjct: 149 CKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARDY-LLNECREQNLNHLPYQDFY 207
Query: 374 TIIAAIEEGKGIFYNIRN 391
I IE K + ++N
Sbjct: 208 EIRKEIENVKEVQEWLQN 225
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 69.5 bits (169), Expect = 4e-14
Identities = 26/180 (14%), Positives = 45/180 (25%), Gaps = 54/180 (30%)
Query: 116 LHRLLEVGCVCNNA---------SIIGDSLLGQPTEGALLAAGMKFGLY--AVNEHYVRL 164
L + +CN A S+ G +E ALL + + ++
Sbjct: 34 WTALSRIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRKMRDRNPKV 93
Query: 165 KEYPFSSEQKMMAVRVHKIGH---------NLPSK---------RDGKMILSQSCSEYPK 206
E F+S K + + P + GK I +
Sbjct: 94 AEISFNSTNKYQLSIHEREDNPQSHVLVMKGAPERILDRCSSILVQGKEIPLDKEMQDAF 153
Query: 207 FQTL----GKGLVAMA---------------------RGSNLQDLCYMGLVGICDPPRPH 241
G G + + LC++GL+ + D H
Sbjct: 154 QNAYLELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMIDHHHHH 213
Score = 58.7 bits (141), Expect = 2e-10
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 20 HGDGRNSSRIRSKPETGTLLEVGCVCNNA---------SIIGDSLLGQPTEGALLAAGMK 70
D ++ + P L + +CN A S+ G +E ALL
Sbjct: 19 TEDQSGATFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIEL 78
Query: 71 FGLY--AVNEHYVRLKEYPFSSEQKMMAVRCIPKEGSSC 107
+ + ++ E F+S K ++
Sbjct: 79 SCGSVRKMRDRNPKVAEISFNSTNKYQLSIHEREDNPQS 117
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 53.8 bits (128), Expect = 9e-09
Identities = 28/147 (19%), Positives = 46/147 (31%), Gaps = 15/147 (10%)
Query: 235 CDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVG--LDTIHGKVLSGDQIDQM 292
P +RE +S L + V+V L++G + +AS + + L +
Sbjct: 80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEY 139
Query: 293 TEHQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVG--MTGDGVNDGVALKKADIGIA 350
K ++K + M GDG D A AD I
Sbjct: 140 AGF--------DETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIG 191
Query: 351 MG-KQGTDVCKEAADMILVDDDFNTII 376
G K+ A + DF ++
Sbjct: 192 FGGNVIRQQVKDNAKWYI--TDFVELL 216
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 53.3 bits (127), Expect = 1e-08
Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 16/192 (8%)
Query: 190 KRDGKMILSQSCSEYPKFQTLGKGLVAMARGSNLQDLCYMGLVGICDPPRPHVRECMSTL 249
++ G L + + P + L K + + L+ I
Sbjct: 23 EKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQ--EVIATLKPLEGAVEFVDW 80
Query: 250 LQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYR 309
L+ +V +++ E + + +G T+ L D D++ +QL+Q
Sbjct: 81 LRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQ---------- 130
Query: 310 VTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVD 369
K V AF++ V GD ND L +A GI +V +E V
Sbjct: 131 --KDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAV- 186
Query: 370 DDFNTIIAAIEE 381
+ + +
Sbjct: 187 HTYEDLKREFLK 198
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 53.3 bits (126), Expect = 1e-08
Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 8/146 (5%)
Query: 235 CDPPRPHVRECMSTLLQSGVKVKLVTGDGQETATAIASMVGLDTIHGKVLSGDQIDQMTE 294
P E + L G V +V+G I +GLD L +
Sbjct: 73 RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGD 132
Query: 295 HQLQQVVNSVTVFYRVTPRHKLTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQ 354
+ + + I K N GDG ND KKA + IA
Sbjct: 133 VEGEVL------KENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAFC-- 184
Query: 355 GTDVCKEAADMILVDDDFNTIIAAIE 380
+ KE AD+ + D I+ I+
Sbjct: 185 AKPILKEKADICIEKRDLREILKYIK 210
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 51.8 bits (123), Expect = 6e-08
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 24/101 (23%)
Query: 38 LLEVGCVCNNASIIGDS------LLGQPTEGALLAAGMKFGLY----------------- 74
L + +CN++S+ + +G+ TE AL K ++
Sbjct: 53 LATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACN 112
Query: 75 -AVNEHYVRLKEYPFSSEQKMMAVRCIPKEGSSCDVDTRFF 114
+ + + FS ++K M+V C P + S V + F
Sbjct: 113 SVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMF 153
Score = 51.4 bits (122), Expect = 6e-08
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 24/95 (25%)
Query: 116 LHRLLEVGCVCNNASIIGDS------LLGQPTEGALLAAGMKFGLY-------------- 155
L L + +CN++S+ + +G+ TE AL K ++
Sbjct: 50 LVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERAN 109
Query: 156 ----AVNEHYVRLKEYPFSSEQKMMAVRVHKIGHN 186
+ + + FS ++K M+V +
Sbjct: 110 ACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSS 144
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 50.0 bits (118), Expect = 2e-07
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 329 VGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
V GDG ND A K +A+ Q + KE AD + + AI
Sbjct: 171 VAHVGDGENDLDAFKVVGYKVAVA-QAPKILKENADYVTKKEYGEGGAEAIYH 222
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 44.6 bits (104), Expect = 1e-05
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 329 VGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
+ + GD ND + TD K +D + I +
Sbjct: 170 ILVIGDSNNDMPMFQLPVRKACPA-NATDNIKAVSDFVSDYSYGEEIGQIFKH 221
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 43.8 bits (102), Expect = 3e-05
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYNIRNF 392
GD ND LK A AMG + K+ A D++ + I+ + N F
Sbjct: 213 GDSGNDAEMLKMARYSFAMG-NAAENIKQIARYATDDNNHEGALNVIQA---VLDNTYPF 268
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 43.0 bits (100), Expect = 5e-05
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND ++ A +G+A+ KE A+ + + + + AIE+
Sbjct: 220 GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFVTKSNLEDGVAFAIEK 267
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 43.0 bits (100), Expect = 5e-05
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 279 IHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTP--RHKLTIVKAFQANGVI----VGMT 332
+ + ++ + + ++ F VT K + + I
Sbjct: 149 MTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSF 208
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GDG ND L+ A IG+AMG Q + K AAD + D + I A++
Sbjct: 209 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYVTAPIDEDGISKAMKH 256
>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus
influenzae, HI1679 [TaxId: 727]}
Length = 177
Score = 42.0 bits (98), Expect = 5e-05
Identities = 15/116 (12%), Positives = 27/116 (23%), Gaps = 7/116 (6%)
Query: 258 LVTGDGQETAT----AIASMVGLDTIHGKVLSGDQIDQMTEHQLQQVVNSVTVFYRVTPR 313
+G+ + + L +V D + + F +
Sbjct: 22 HYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEK 81
Query: 314 HK--LTIVKAFQANGVIVGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMIL 367
++K GD D A A+ K A D +L
Sbjct: 82 ETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVA-DAPIYVKNAVDHVL 136
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 42.2 bits (98), Expect = 9e-05
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD +ND L+ A G+AMG + K AD + + +D + + ++
Sbjct: 236 GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAVTLTNDEHGVAHMMKH 283
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 41.1 bits (95), Expect = 2e-04
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 329 VGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
V + GD ND L A+ TD K A +L +A + +
Sbjct: 226 VLVVGDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVAYLLK 277
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 40.7 bits (94), Expect = 3e-04
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEE 381
GD ND ++A + +AM + KEA+D++ + ++ + + +E
Sbjct: 213 GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIVTLTNNDSGVSYVLER 260
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 33.1 bits (74), Expect = 0.073
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 329 VGMTGDGVNDGVALKKADIGIAMGKQGTDVCKEAADMILVDDDFNTIIAAIEEGKGIFYN 388
+ GD ND + + G+ + D D A I
Sbjct: 181 TLVCGDSGNDIGLFETSARGVIVR-NAQPELLHWYDQW---GDSRHYRAQSSHAGAILEA 236
Query: 389 IRNF 392
I +F
Sbjct: 237 IAHF 240
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 31.2 bits (69), Expect = 0.32
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 333 GDGVNDGVALKKADIGIAMGKQGTDVCKEAADMI 366
GD ND + D +G + + +I
Sbjct: 203 GDSYNDFPMFEVVDKVFIVGSLKHKKAQNVSSII 236
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
acidocaldarius [TaxId: 405212]}
Length = 308
Score = 30.6 bits (67), Expect = 0.56
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 192 DGKMILSQSCSEYPKFQTLGKGLVAMARGSNLQDL-CYMGLVGICDPPRPHVRECMSTLL 250
G M L + L + +L L DP R + L
Sbjct: 205 TGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKLYAEALN 264
Query: 251 QSGVKVKLVTGDGQ 264
++GVKV++ +
Sbjct: 265 KAGVKVEIENFEDL 278
>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
1831]}
Length = 317
Score = 28.3 bits (61), Expect = 2.6
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 227 CYMGLVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQ 264
DP R E LLQ+GV V+L + G
Sbjct: 250 PTYLSTMELDPLRDEGIEYALRLLQAGVSVELHSFPGT 287
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 25.9 bits (57), Expect = 4.6
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 563 LTIND-IAFLTALTSTVFFVSEIKKAIERICERKCLR 598
L N ++ L ++KK IE + +R +
Sbjct: 35 LGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYME 71
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 27.4 bits (59), Expect = 5.7
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 231 LVGICDPPRPHVRECMSTLLQSGVKVKLVTGDGQ 264
+ DP R L ++GV+ +V G
Sbjct: 250 ITAEYDPLRDEGEVFGQMLRRAGVEASIVRYRGV 283
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 27.0 bits (58), Expect = 6.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 333 GDGVNDGVALKKADIGIAMG 352
GDG ND L+ D + +
Sbjct: 210 GDGPNDAPLLEVMDYAVIVK 229
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.401
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,172,133
Number of extensions: 101245
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 33
Length of query: 608
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 517
Effective length of database: 1,158,166
Effective search space: 598771822
Effective search space used: 598771822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.0 bits)