Query psy1679
Match_columns 250
No_of_seqs 158 out of 1539
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 22:08:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0206|consensus 100.0 1.8E-67 4E-72 528.3 1.5 243 1-247 582-1032(1151)
2 PLN03190 aminophospholipid tra 100.0 3.7E-52 8E-57 426.6 20.0 233 2-244 658-1099(1178)
3 TIGR01652 ATPase-Plipid phosph 100.0 1E-46 2.2E-51 386.3 21.3 238 2-243 563-1002(1057)
4 KOG0210|consensus 100.0 9.4E-40 2E-44 309.0 9.6 225 2-240 589-1001(1051)
5 COG0474 MgtA Cation transport 99.8 3.4E-18 7.3E-23 173.7 11.4 82 91-180 721-802 (917)
6 TIGR01116 ATPase-IIA1_Ca sarco 99.7 1E-16 2.2E-21 163.2 16.2 68 102-175 720-787 (917)
7 TIGR01523 ATPase-IID_K-Na pota 99.7 1.5E-15 3.3E-20 156.1 17.4 79 91-175 828-908 (1053)
8 TIGR01106 ATPase-IIC_X-K sodiu 99.6 2.3E-15 4.9E-20 154.5 14.8 79 91-177 766-845 (997)
9 TIGR01517 ATPase-IIB_Ca plasma 99.6 1.1E-14 2.3E-19 148.9 15.0 72 100-177 757-828 (941)
10 KOG0204|consensus 99.4 2.9E-12 6.2E-17 125.5 11.9 67 2-90 596-664 (1034)
11 TIGR01522 ATPase-IIA2_Ca golgi 99.3 2.5E-11 5.4E-16 123.6 15.4 106 98-212 704-809 (884)
12 KOG0202|consensus 99.0 2.6E-10 5.7E-15 112.0 4.5 72 2-90 530-601 (972)
13 TIGR01657 P-ATPase-V P-type AT 99.0 9.7E-10 2.1E-14 113.9 6.9 69 2-90 605-673 (1054)
14 PRK15122 magnesium-transportin 98.9 1.1E-08 2.4E-13 104.5 11.8 64 3-89 503-566 (903)
15 TIGR01524 ATPase-IIIB_Mg magne 98.8 2.4E-08 5.2E-13 101.7 12.3 62 3-89 470-531 (867)
16 PRK10517 magnesium-transportin 98.7 4.1E-08 8.9E-13 100.3 9.9 62 3-89 505-566 (902)
17 TIGR01647 ATPase-IIIA_H plasma 98.1 4E-06 8.6E-11 84.5 5.3 52 3-90 408-459 (755)
18 KOG0208|consensus 97.8 3.3E-05 7.2E-10 77.8 5.5 70 1-90 653-722 (1140)
19 PRK01122 potassium-transportin 97.2 0.0005 1.1E-08 68.5 5.6 30 61-90 433-462 (679)
20 KOG0209|consensus 97.1 0.00069 1.5E-08 67.6 5.6 63 5-87 627-689 (1160)
21 TIGR01497 kdpB K+-transporting 97.0 0.00087 1.9E-08 66.7 5.0 30 61-90 434-463 (675)
22 PRK14010 potassium-transportin 96.8 0.0019 4.1E-08 64.4 5.1 31 60-90 428-458 (673)
23 TIGR01494 ATPase_P-type ATPase 96.7 0.0023 5E-08 61.5 5.1 35 63-97 337-371 (499)
24 KOG0203|consensus 95.7 0.002 4.4E-08 64.5 -0.8 31 60-90 577-607 (1019)
25 PF00689 Cation_ATPase_C: Cati 94.8 0.79 1.7E-05 37.5 12.0 69 105-179 5-73 (182)
26 PRK11033 zntA zinc/cadmium/mer 93.8 0.12 2.6E-06 52.4 5.9 31 60-90 555-585 (741)
27 PF00702 Hydrolase: haloacid d 88.6 0.57 1.2E-05 38.8 3.9 37 61-97 115-151 (215)
28 TIGR01525 ATPase-IB_hvy heavy 88.1 0.8 1.7E-05 44.8 5.1 31 60-90 371-402 (556)
29 KOG0205|consensus 85.3 0.43 9.2E-06 47.4 1.4 57 3-87 450-506 (942)
30 TIGR01512 ATPase-IB2_Cd heavy 82.7 1.1 2.3E-05 43.8 3.0 40 58-97 347-387 (536)
31 PRK10671 copA copper exporting 81.5 2.2 4.8E-05 43.8 4.9 30 61-90 638-667 (834)
32 TIGR01511 ATPase-IB1_Cu copper 79.1 1.6 3.4E-05 42.8 2.9 33 58-90 390-422 (562)
33 COG2217 ZntA Cation transport 75.7 3 6.4E-05 42.3 3.7 30 61-90 525-554 (713)
34 CHL00200 trpA tryptophan synth 66.1 16 0.00036 32.3 5.9 83 2-87 110-199 (263)
35 PF06064 Gam: Host-nuclease in 60.7 18 0.00039 26.4 4.1 31 25-63 10-40 (98)
36 PF00290 Trp_syntA: Tryptophan 59.9 10 0.00022 33.6 3.4 80 5-87 109-195 (259)
37 COG0159 TrpA Tryptophan syntha 58.6 33 0.00072 30.5 6.4 81 4-87 115-202 (265)
38 PF07637 PSD5: Protein of unkn 57.6 28 0.00061 23.8 4.6 49 2-59 5-53 (64)
39 KOG0207|consensus 56.5 11 0.00025 38.9 3.4 30 61-90 711-740 (951)
40 PRK13111 trpA tryptophan synth 52.7 57 0.0012 28.8 7.0 82 4-88 110-198 (258)
41 PLN02591 tryptophan synthase 48.0 51 0.0011 29.0 5.9 83 3-88 98-187 (250)
42 TIGR03471 HpnJ hopanoid biosyn 45.6 36 0.00078 32.5 4.9 94 2-106 288-386 (472)
43 TIGR01657 P-ATPase-V P-type AT 45.0 1.4E+02 0.003 31.9 9.4 67 104-179 889-955 (1054)
44 PF03579 SHP: Small hydrophobi 42.3 39 0.00085 22.9 3.2 27 214-240 10-36 (64)
45 PF08988 DUF1895: Protein of u 39.7 52 0.0011 23.0 3.7 19 22-40 38-56 (68)
46 cd04724 Tryptophan_synthase_al 37.5 1.4E+02 0.003 25.8 6.9 84 2-88 95-185 (242)
47 PF10281 Ish1: Putative stress 37.0 37 0.0008 20.6 2.3 31 23-56 5-36 (38)
48 smart00729 Elp3 Elongator prot 36.7 86 0.0019 25.1 5.3 97 2-107 101-201 (216)
49 TIGR02026 BchE magnesium-proto 35.5 1.3E+02 0.0028 29.0 7.0 95 2-107 288-387 (497)
50 TIGR00262 trpA tryptophan synt 33.4 1.2E+02 0.0027 26.5 6.0 84 2-88 106-196 (256)
51 PF15460 SAS4: Something about 30.3 49 0.0011 25.0 2.5 49 22-73 3-62 (101)
52 cd01335 Radical_SAM Radical SA 30.1 1.9E+02 0.0041 22.6 6.2 95 2-104 89-187 (204)
53 PRK07094 biotin synthase; Prov 29.5 2.3E+02 0.005 25.3 7.2 93 2-105 130-227 (323)
54 cd03413 CbiK_C Anaerobic cobal 25.0 62 0.0013 24.3 2.3 37 2-38 46-92 (103)
55 KOG2698|consensus 23.9 19 0.00042 30.8 -0.8 80 47-148 60-139 (247)
56 COG1422 Predicted membrane pro 22.9 1.2E+02 0.0026 25.8 3.8 27 25-56 79-105 (201)
57 cd03154 TM4SF3_like_LEL Tetras 22.6 91 0.002 22.5 2.8 33 49-81 31-63 (100)
58 PRK06228 F0F1 ATP synthase sub 22.6 1.7E+02 0.0037 23.0 4.5 48 12-62 74-121 (131)
59 PF06849 DUF1246: Protein of u 22.2 40 0.00087 26.5 0.7 21 9-30 18-38 (124)
60 cd02067 B12-binding B12 bindin 22.0 1.2E+02 0.0025 22.8 3.4 30 59-88 48-77 (119)
61 PF05416 Peptidase_C37: Southa 21.7 31 0.00066 32.9 0.0 44 10-53 241-287 (535)
62 PF04055 Radical_SAM: Radical 21.6 3.6E+02 0.0077 20.3 7.1 73 2-84 91-165 (166)
63 cd02637 R3H_PARN R3H domain of 20.6 25 0.00055 24.3 -0.6 33 49-81 6-38 (65)
64 TIGR00433 bioB biotin syntheta 20.1 1.9E+02 0.0042 25.3 4.8 91 2-105 124-219 (296)
No 1
>KOG0206|consensus
Probab=100.00 E-value=1.8e-67 Score=528.33 Aligned_cols=243 Identities=44% Similarity=0.744 Sum_probs=232.5
Q ss_pred ChHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHH
Q psy1679 1 MDDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPK 80 (250)
Q Consensus 1 ~~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~e 80 (250)
++|+++||.+||||||+|+|+++++||++|+++|++|+++ ++||+++++++++++|+||+|+|+|||||||||||||
T Consensus 582 ~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts---~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPe 658 (1151)
T KOG0206|consen 582 QEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTS---LTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPE 658 (1151)
T ss_pred HHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHhcchhhcceeeechhccCchH
Confidence 3699999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhhccc----------------------------------------------------------------------
Q psy1679 81 TIANLLLAVT---------------------------------------------------------------------- 90 (250)
Q Consensus 81 tI~~l~~a~~---------------------------------------------------------------------- 90 (250)
||++|++|++
T Consensus 659 tI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 738 (1151)
T KOG0206|consen 659 TIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKLEHSE 738 (1151)
T ss_pred HHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhhccCc
Confidence 9999999554
Q ss_pred --------------------------------------------------------------------------------
Q psy1679 91 -------------------------------------------------------------------------------- 90 (250)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (250)
T Consensus 739 ~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVG 818 (1151)
T KOG0206|consen 739 KPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVG 818 (1151)
T ss_pred CCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCee
Confidence
Q ss_pred ---------------------------------------------------------eeeeeecccCccccchhhHHHHH
Q psy1679 91 ---------------------------------------------------------LYALFCGFSAQTIFDPMYISVFN 113 (250)
Q Consensus 91 ---------------------------------------------------------~f~~~~gfSg~~lyd~~~l~~yN 113 (250)
||+||||||||++||+|++++||
T Consensus 819 IsG~EGmQAvmsSD~AIaqFrfL~rLLLVHGhW~Y~R~a~~ilyfFYKNi~f~~~~fwy~f~~gfSgq~~yd~~~l~lyN 898 (1151)
T KOG0206|consen 819 ISGQEGMQAVMSSDFAIAQFRFLERLLLVHGHWSYIRLAKMILYFFYKNIAFTFTLFWYQFFNGFSGQTLYDDWYLSLYN 898 (1151)
T ss_pred eccchhhhhhhcccchHHHHHHHhhhheeecceeHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccceEEEEEe
Confidence 99999999999999999999999
Q ss_pred hhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCccccc
Q psy1679 114 LFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTFIH-GVSSNGRTFSD 192 (250)
Q Consensus 114 ~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~~~-~~~~~G~~~~~ 192 (250)
++|||+||+++|+||||++++.++++|+||+.|+++..||+++||.||++|++||+++||+++.++.+ ....+|+.. |
T Consensus 899 v~FTSlPvi~lGvfdqDvsa~~~l~~P~LY~~g~~~~~f~~~~f~~~~~~g~~~sli~Ff~~~~~~~~~~~~~~G~~~-d 977 (1151)
T KOG0206|consen 899 VLFTSLPVIVLGVFDQDVSAETLLRFPELYQRGQLNLLFNWKRFWGWMLDGFYQSLVIFFLPYLVFEEQAVTSNGLTA-D 977 (1151)
T ss_pred EEeecCchhheeecccCCCHHHHhhCCcchhhhhhccccchHHHHHHHHHHHHhheeeeeeeHhhheeeeeccCCCcC-C
Confidence 99999999999999999999999999999999999999999999999999999999999999999863 566678654 9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCCCCc
Q psy1679 193 YVFMATVLAFILVAVVSVQILFDTQYWTYINTLSMLVSIASYFVFTYVFSTGRPA 247 (250)
Q Consensus 193 ~~~~g~~v~t~~v~~v~~~i~l~~~~wt~~~~~~i~~Si~~~~~~~~i~~~~~~~ 247 (250)
++.+|+.++|++|++||+++++++++|||++|+++|||+++||+++++|+.++|-
T Consensus 978 ~~~~G~~~~T~~Vivv~~~iaL~~~ywT~i~~i~i~gSi~~~f~f~~iy~~~~~~ 1032 (1151)
T KOG0206|consen 978 YWTLGTTVFTIIVIVVNLKIALETSYWTWINHIVIWGSILLWFVFLFIYSELTPA 1032 (1151)
T ss_pred hhhccceEEEEEEEEEEeeeeeeehheeHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999865443
No 2
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=3.7e-52 Score=426.63 Aligned_cols=233 Identities=27% Similarity=0.500 Sum_probs=217.7
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+++++||++||||||+|+|+++++|+++|.++|++|+.+ +++|+++++++.+++|+||+++|++|+|||||+|||++
T Consensus 658 ~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~---~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~ 734 (1178)
T PLN03190 658 AHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTA---LIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEA 734 (1178)
T ss_pred HHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhh---hhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHH
Confidence 578999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhhccc-----------------------------------------------------------------------
Q psy1679 82 IANLLLAVT----------------------------------------------------------------------- 90 (250)
Q Consensus 82 I~~l~~a~~----------------------------------------------------------------------- 90 (250)
|+.|++|++
T Consensus 735 I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1178)
T PLN03190 735 IESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAA 814 (1178)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 999998210
Q ss_pred --------------------------------------------------------------------------------
Q psy1679 91 -------------------------------------------------------------------------------- 90 (250)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (250)
T Consensus 815 ~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGI 894 (1178)
T PLN03190 815 SDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGV 894 (1178)
T ss_pred CCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeee
Confidence
Q ss_pred ----------------------------------------------------------eeeeeecccCccccchhhHHHH
Q psy1679 91 ----------------------------------------------------------LYALFCGFSAQTIFDPMYISVF 112 (250)
Q Consensus 91 ----------------------------------------------------------~f~~~~gfSg~~lyd~~~l~~y 112 (250)
||+++||||||++||+|++++|
T Consensus 895 GIsG~EG~qA~~aSDfaI~~Fr~L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg~~ly~~~~~~~y 974 (1178)
T PLN03190 895 GISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWSSVLY 974 (1178)
T ss_pred eecCchhHHHHHhhccchhhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999999999
Q ss_pred HhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCccccc
Q psy1679 113 NLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTFIHGVSSNGRTFSD 192 (250)
Q Consensus 113 N~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~~~~~~~~G~~~~~ 192 (250)
|++||++||+++|+||||++++.++++|+||+.|++++.||.++||.|+++|+|||+++||++++++.+.. .|
T Consensus 975 N~~fTslPii~~~ifD~dv~~~~l~~~P~LY~~~~~~~~~n~~~F~~w~~~~i~qs~iiff~~~~~~~~~~-------~~ 1047 (1178)
T PLN03190 975 SVIYTALPTIVVGILDKDLSRRTLLKYPQLYGAGQRQEAYNSKLFWLTMIDTLWQSAVVFFVPLFAYWAST-------ID 1047 (1178)
T ss_pred HHHHHhHHHHHHHHhcccCCHHHHHhCcHhhhhhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cC
Confidence 99999999999999999999999999999999999999999999999999999999999999998875431 12
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q psy1679 193 YVFMATVLAFILVAVVSVQILFDTQYWTYINTLSMLVSIASYFVFTYVFSTG 244 (250)
Q Consensus 193 ~~~~g~~v~t~~v~~v~~~i~l~~~~wt~~~~~~i~~Si~~~~~~~~i~~~~ 244 (250)
.+.+|.+.++++++++|+|+++++++|||++++++|+|+++|+++.++|+..
T Consensus 1048 ~~~~~~~~~~~~v~~vnl~i~~~~~~wt~~~~~~i~~Si~~~~i~~~~~~~~ 1099 (1178)
T PLN03190 1048 GSSIGDLWTLAVVILVNLHLAMDIIRWNWITHAAIWGSIVATFICVIVIDAI 1099 (1178)
T ss_pred ceeEhHhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888999999999999999999999999999999999998888743
No 3
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1e-46 Score=386.26 Aligned_cols=238 Identities=36% Similarity=0.660 Sum_probs=224.2
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+++++||++|+||||+|+|+++++|+++|.++|++|+.+ +++|++++++..+++|+||+++|++|||||||+|||||
T Consensus 563 ~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~---~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~et 639 (1057)
T TIGR01652 563 EHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTA---LTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPET 639 (1057)
T ss_pred HHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHH
Confidence 578999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHhhccc-----------------------------------------------------------------------
Q psy1679 82 IANLLLAVT----------------------------------------------------------------------- 90 (250)
Q Consensus 82 I~~l~~a~~----------------------------------------------------------------------- 90 (250)
|+.||+|++
T Consensus 640 I~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi 719 (1057)
T TIGR01652 640 IELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVI 719 (1057)
T ss_pred HHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEE
Confidence 999999211
Q ss_pred --------------------------------------------------------------------------------
Q psy1679 91 -------------------------------------------------------------------------------- 90 (250)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (250)
T Consensus 720 ~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~ 799 (1057)
T TIGR01652 720 DGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGM 799 (1057)
T ss_pred ccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHH
Confidence
Q ss_pred --------------------------------------------------eeeeeecccCccccchhhHHHHHhhhcchh
Q psy1679 91 --------------------------------------------------LYALFCGFSAQTIFDPMYISVFNLFYTSLP 120 (250)
Q Consensus 91 --------------------------------------------------~f~~~~gfSg~~lyd~~~l~~yN~~fTslP 120 (250)
||+++|+|||+++|+++.+++||++||++|
T Consensus 800 qA~~aaD~~i~~F~~L~~lll~~GR~~~~r~~~~i~~~~~kn~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~n~~~t~lp 879 (1057)
T TIGR01652 800 QAVMASDFAIGQFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVLYNVFFTALP 879 (1057)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHH
Confidence 899999999999999999999999999999
Q ss_pred hhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCccccchhhhhHH
Q psy1679 121 ILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTFIH-GVSSNGRTFSDYVFMATV 199 (250)
Q Consensus 121 ~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~~~-~~~~~G~~~~~~~~~g~~ 199 (250)
++++|++|+|++++.+.++|++|+.++++..||.+.|+.|++.|++||+++|++++..+.+ ....+| ...|++.+|++
T Consensus 880 ~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~f~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 958 (1057)
T TIGR01652 880 VISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFFPMFAYILGDFVSSG-SLDDFSSVGVI 958 (1057)
T ss_pred HHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC-cccchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988864 333455 56789999999
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC
Q psy1679 200 LAFILVAVVSVQILFDTQYWTYINTLSMLVSIASYFVFTYVFST 243 (250)
Q Consensus 200 v~t~~v~~v~~~i~l~~~~wt~~~~~~i~~Si~~~~~~~~i~~~ 243 (250)
+|+++++++|+++++++++|||++++++|+|+++|+++.++|+.
T Consensus 959 ~~~~~~~~~~~~~~~~~~~wt~~~~~~~~~S~~~~~~~~~~~~~ 1002 (1057)
T TIGR01652 959 VFTALVVIVNLKIALEINRWNWISLITIWGSILVWLIFVIVYSS 1002 (1057)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999874
No 4
>KOG0210|consensus
Probab=100.00 E-value=9.4e-40 Score=309.02 Aligned_cols=225 Identities=25% Similarity=0.448 Sum_probs=205.1
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHH-hhhcCcEEEEEeeeecCCCCChHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYD-ELESDLDLVGVTAIEDKLQDDVPK 80 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~-~iE~~L~l~G~t~ieD~Lq~~V~e 80 (250)
+.-..+|+|||||||+|+|.++++||+.+.++|++|+.+ +.||++++.++.+ .+|+||+++|.||+|||||+||..
T Consensus 589 EE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lS---i~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~ 665 (1051)
T KOG0210|consen 589 EECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLS---ISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDVKP 665 (1051)
T ss_pred hhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCc---cchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhhHh
Confidence 455679999999999999999999999999999999999 9999999999988 899999999999999999999999
Q ss_pred HHHHHhhccc----------------------------------------------------------------------
Q psy1679 81 TIANLLLAVT---------------------------------------------------------------------- 90 (250)
Q Consensus 81 tI~~l~~a~~---------------------------------------------------------------------- 90 (250)
|++.||+|++
T Consensus 666 tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yy 745 (1051)
T KOG0210|consen 666 TLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYY 745 (1051)
T ss_pred HHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHH
Confidence 9999999654
Q ss_pred --------------------------------------------------------------------------------
Q psy1679 91 -------------------------------------------------------------------------------- 90 (250)
Q Consensus 91 -------------------------------------------------------------------------------- 90 (250)
T Consensus 746 e~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLAADfSItqF 825 (1051)
T KOG0210|consen 746 EDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLAADFSITQF 825 (1051)
T ss_pred HHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchhccccHHHH
Confidence
Q ss_pred -------------------------------------eeeeeecccCccccchhhHHHHHhhhcchhhhhhhhccccCCh
Q psy1679 91 -------------------------------------LYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSD 133 (250)
Q Consensus 91 -------------------------------------~f~~~~gfSg~~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~ 133 (250)
.|.....|.+.++|.+++|..|.+++|.+|++.+ +.|+|+++
T Consensus 826 ~Hv~rLLl~HGR~SYkrsa~laqfViHRGL~Is~~Qavfs~v~yF~~V~LyqG~LmvgysT~YTmlPVFSl-v~d~Dv~~ 904 (1051)
T KOG0210|consen 826 SHVSRLLLWHGRNSYKRSAKLAQFVIHRGLIISTMQAVFSSVFYFAPVALYQGFLMVGYSTCYTMLPVFSL-VLDRDVSE 904 (1051)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcchHHhhhhHHHHHHHHHHHhhhhee-eecccccH
Confidence 4666666999999999999999999999999998 99999999
Q ss_pred hhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCccccchhhhhHHHHHHHHHHHHHHHH
Q psy1679 134 TNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTFIHGVSSNGRTFSDYVFMATVLAFILVAVVSVQIL 213 (250)
Q Consensus 134 ~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~~~~~~~~G~~~~~~~~~g~~v~t~~v~~v~~~i~ 213 (250)
+..+.||+||++-.+++.++.|+|+.|.+-++||+.+|.+..+..+.. ++..+..+.|++++++-.+.++
T Consensus 905 ~~a~~yPELYKeL~kgr~lSYKtF~iwvLISiYQG~vim~g~~~l~~~----------ef~~ivaisFtaLi~tELiMVa 974 (1051)
T KOG0210|consen 905 SLAVLYPELYKELTKGRSLSYKTFFIWVLISIYQGSVIMYGALLLFDT----------EFIHIVAISFTALILTELIMVA 974 (1051)
T ss_pred HHHhhhHHHHHHHhcCCccchhhhhhhhhHHHHcccHHHHHHHHHhhh----------hheEeeeeeeHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987766632 2223556778899999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHH
Q psy1679 214 FDTQYWTYINTLSMLVSIASYFVFTYV 240 (250)
Q Consensus 214 l~~~~wt~~~~~~i~~Si~~~~~~~~i 240 (250)
+.+++|+|...++-..|+.+|++.+.+
T Consensus 975 Ltv~tw~~~m~vae~lsL~~Yivsl~~ 1001 (1051)
T KOG0210|consen 975 LTVRTWHWLMVVAELLSLALYIVSLAF 1001 (1051)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865544
No 5
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.4e-18 Score=173.71 Aligned_cols=82 Identities=28% Similarity=0.429 Sum_probs=70.8
Q ss_pred eeeeeecccCccccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHH
Q psy1679 91 LYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAV 170 (250)
Q Consensus 91 ~f~~~~gfSg~~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~i 170 (250)
++.+++.+ +..+.++.+.++|++++++|++.+|+.+ ++...+++| .++++...|+.+.++.|++...+++.+
T Consensus 721 ~~~~~~~~--~~p~~~~qll~inll~d~~pa~~L~~~~---~~~~~m~~~---~~~p~~~i~~~~~~~~~i~~~~~~~~i 792 (917)
T COG0474 721 IYSLFNLF--FLPLTPLQLLWINLLTDSLPALALGVED---PESDVMKRP---PRGPEEGLFNRKIFWRFILIIGLLSAI 792 (917)
T ss_pred HHHHHhcc--cccHHHHHHHHHHHHHhhhhhheeecCC---CcccccccC---CCCccccccchhHHHHHHHHHHHHHHH
Confidence 45555555 6679999999999999999999999998 777888888 467788899999999999999999999
Q ss_pred HHHHHHhhhc
Q psy1679 171 MFFVIYGTFI 180 (250)
Q Consensus 171 iff~~~~~~~ 180 (250)
++++++....
T Consensus 793 ~~~~~~~~~~ 802 (917)
T COG0474 793 LFILTFLLYL 802 (917)
T ss_pred HHHHHHHHHH
Confidence 9999887664
No 6
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.72 E-value=1e-16 Score=163.21 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=53.7
Q ss_pred cccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q psy1679 102 TIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVI 175 (250)
Q Consensus 102 ~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~ 175 (250)
..+.++.+.++|++++++|.+++|..+.| ++.+.+.|. .++++.++++.++.|++.|++++++.++..
T Consensus 720 ~pl~~~qll~inli~d~lp~~~l~~~~~~--~~~m~~pP~----~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 787 (917)
T TIGR01116 720 EGLIPVQLLWVNLVTDGLPATALGFNPPD--KDIMWKPPR----RPDEPLITGWLFFRYLVVGVYVGLATVGGF 787 (917)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCcc--hhHhcCCCC----CCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999987654 444445554 346789999999999999999998865443
No 7
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.67 E-value=1.5e-15 Score=156.14 Aligned_cols=79 Identities=10% Similarity=0.161 Sum_probs=56.7
Q ss_pred eeeeeecccCcccc--chhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHH
Q psy1679 91 LYALFCGFSAQTIF--DPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTS 168 (250)
Q Consensus 91 ~f~~~~gfSg~~ly--d~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S 168 (250)
++.++..+||.+.+ .+..+.++|++..++|.+.+|. | -+++.+|+.|. +.++...++++.+..+++.|++.+
T Consensus 828 ~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL~~-e--~~~~~~m~~~P---r~~~~~l~~~~~~~~~~~~g~~~~ 901 (1053)
T TIGR01523 828 IGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGL-E--KAAPDLMDRLP---HDNEVGIFQKELIIDMFAYGFFLG 901 (1053)
T ss_pred HHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhhcc-C--CCChhHHhcCC---CCCCccccCHHHHHHHHHHHHHHH
Confidence 45566667787544 4788899999999999999988 2 35555665554 123456888887777889999988
Q ss_pred HHHHHHH
Q psy1679 169 AVMFFVI 175 (250)
Q Consensus 169 ~iiff~~ 175 (250)
++.+...
T Consensus 902 ~~~l~~~ 908 (1053)
T TIGR01523 902 GSCLASF 908 (1053)
T ss_pred HHHHHHH
Confidence 7666544
No 8
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.64 E-value=2.3e-15 Score=154.50 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=57.7
Q ss_pred eeeeeecccCccccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHH-HHHHHHH
Q psy1679 91 LYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSL-HGFYTSA 169 (250)
Q Consensus 91 ~f~~~~gfSg~~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~-~gi~~S~ 169 (250)
++.++.++++ +.++.+.++|++++++|.+.+|. ++.+++.+.+.|. ..+++..++.+.++.|++ .|+++++
T Consensus 766 ~~~~~~~~~p---l~~~qlL~inli~d~lp~~al~~--e~~~~~~m~~~P~---~~~~~~l~~~~~~~~~~~~~g~~~~~ 837 (997)
T TIGR01106 766 IFIIANIPLP---LGTITILCIDLGTDMVPAISLAY--EKAESDIMKRQPR---NPKTDKLVNERLISMAYGQIGMIQAL 837 (997)
T ss_pred HHHHHcCcch---hHHHHHHHHHHHHHHHHHHHHhc--CCCCcccccCCCc---CCccccccCHHHHHHHHHHHHHHHHH
Confidence 4555554444 44888999999999999999988 4455566666776 334578889888888775 4999998
Q ss_pred HHHHHHHh
Q psy1679 170 VMFFVIYG 177 (250)
Q Consensus 170 iiff~~~~ 177 (250)
+.|+..+.
T Consensus 838 ~~~~~~~~ 845 (997)
T TIGR01106 838 GGFFTYFV 845 (997)
T ss_pred HHHHHHHH
Confidence 88776654
No 9
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.60 E-value=1.1e-14 Score=148.93 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=57.6
Q ss_pred CccccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1679 100 AQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYG 177 (250)
Q Consensus 100 g~~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~ 177 (250)
+...++++.+.++|++++++|.+.++ .|.+++.+++.|..+ ++...++...+..+...|++++++.|++.+.
T Consensus 757 ~~~pl~~~qil~inl~~d~~~al~l~---~e~~~~~lm~~~P~~---~~~~li~~~~~~~i~~~~~~~~~~~~~~~~~ 828 (941)
T TIGR01517 757 STSPLTAVQLLWVNLIMDTLAALALA---TEPPTEALLDRKPIG---RNAPLISRSMWKNILGQAGYQLVVTFILLFA 828 (941)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHc---cCCccHHHHhCCCCC---CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999987 345778888888743 3567788888888999999999988776554
No 10
>KOG0204|consensus
Probab=99.38 E-value=2.9e-12 Score=125.52 Aligned_cols=67 Identities=30% Similarity=0.430 Sum_probs=53.7
Q ss_pred hHHHHHhhhccceeEEEEEEcChhH--HHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENF--YNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~--~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~ 79 (250)
+.++.||++||||+|+|||++.+.+ -.+| ++ .+..+.+|+++|++||+||.|+|||
T Consensus 596 ~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~--------------~~--------~~~~~~~lt~laivGIkDPvRPgV~ 653 (1034)
T KOG0204|consen 596 DVIEPMASEGLRTICLAYRDFVAGPDEEPSW--------------DN--------EELPEGGLTLLAIVGIKDPVRPGVP 653 (1034)
T ss_pred HHHHHHHHhhhheeeEEeeccccCCCCCCCc--------------cc--------cccCCCCeEEEEEeeccCCCCCCcH
Confidence 4678999999999999999976541 0111 11 1356899999999999999999999
Q ss_pred HHHHHHhhccc
Q psy1679 80 KTIANLLLAVT 90 (250)
Q Consensus 80 etI~~l~~a~~ 90 (250)
++|+.|++|++
T Consensus 654 ~AV~~Cq~AGI 664 (1034)
T KOG0204|consen 654 EAVQLCQRAGI 664 (1034)
T ss_pred HHHHHHHHcCc
Confidence 99999999553
No 11
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.33 E-value=2.5e-11 Score=123.64 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=68.4
Q ss_pred ccCccccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1679 98 FSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYG 177 (250)
Q Consensus 98 fSg~~lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~ 177 (250)
+.....+..+.+.+.|++...+|.+.+|. | -+++.+++.|. +.++.+.+++..+..+...|+++.++.++....
T Consensus 704 ~~~~~pl~~~qiL~inl~~d~~~a~~l~~-e--~~~~~~m~~~P---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 777 (884)
T TIGR01522 704 MGFPNPLNAMQILWINILMDGPPAQSLGV-E--PVDKDVMRKPP---RPRNDKILTKDLIKKILVSAIIIVVGTLFVFVR 777 (884)
T ss_pred HcCCCchhHHHHHHHHHHHHhhHHHHhcc-C--CCChhHhhCCC---CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444578888999999999999988875 2 24455555544 235678899988888888888888776555433
Q ss_pred hhcccccCCCccccchhhhhHHHHHHHHHHHHHHH
Q psy1679 178 TFIHGVSSNGRTFSDYVFMATVLAFILVAVVSVQI 212 (250)
Q Consensus 178 ~~~~~~~~~G~~~~~~~~~g~~v~t~~v~~v~~~i 212 (250)
.+.... . ........|.++++..+....|.|-
T Consensus 778 ~~~~~~--~-~~~~~t~~f~~~v~~q~~~~~~~r~ 809 (884)
T TIGR01522 778 EMQDGV--I-TARDTTMTFTCFVFFDMFNALACRS 809 (884)
T ss_pred HHcCCc--c-hhhHHHHHHHHHHHHHHHHHHHHcc
Confidence 221110 0 0011234567777777777777765
No 12
>KOG0202|consensus
Probab=99.00 E-value=2.6e-10 Score=111.96 Aligned_cols=72 Identities=26% Similarity=0.263 Sum_probs=53.7
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+...+++++|||+|++|+|..+.+-- ....++...+ ...+|+||+++|++||-||+|++|.++
T Consensus 530 ~~~~~~g~~gLRvLalA~~~~~~~~~---------~~~~l~~~s~--------~~~~E~~LtFvGlVGi~DPPR~ev~~a 592 (972)
T KOG0202|consen 530 ANVYEMGSEGLRVLALASKDSPGQVP---------DDQDLNDTSN--------RATAESDLTFVGLVGILDPPRPEVADA 592 (972)
T ss_pred HHHHHHhhccceEEEEEccCCcccCh---------hhhhhccccc--------ccccccceEEEEEeeccCCCchhHHHH
Confidence 35678999999999999998764100 0000000112 357899999999999999999999999
Q ss_pred HHHHhhccc
Q psy1679 82 IANLLLAVT 90 (250)
Q Consensus 82 I~~l~~a~~ 90 (250)
|+.|++||+
T Consensus 593 i~~c~~aGI 601 (972)
T KOG0202|consen 593 IELCRQAGI 601 (972)
T ss_pred HHHHHHcCC
Confidence 999999554
No 13
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.96 E-value=9.7e-10 Score=113.88 Aligned_cols=69 Identities=25% Similarity=0.436 Sum_probs=56.3
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+.+++||++|+|||++|+|++++.+.+++. . + +| +++|+||+++|++++|||+|++++++
T Consensus 605 ~~~~~~a~~G~RVLalA~k~l~~~~~~~~~--------~---~-~r--------~~~E~~L~flGli~~~d~lr~~~~~~ 664 (1054)
T TIGR01657 605 EVLKSYTREGYRVLALAYKELPKLTLQKAQ--------D---L-SR--------DAVESNLTFLGFIVFENPLKPDTKEV 664 (1054)
T ss_pred HHHHHHHhcCCEEEEEEEeecCccchhhhh--------h---c-cH--------HHHhcCceEEEEEEEecCCCccHHHH
Confidence 457899999999999999999754332221 0 1 23 46899999999999999999999999
Q ss_pred HHHHhhccc
Q psy1679 82 IANLLLAVT 90 (250)
Q Consensus 82 I~~l~~a~~ 90 (250)
|+.||+|++
T Consensus 665 I~~l~~agi 673 (1054)
T TIGR01657 665 IKELKRASI 673 (1054)
T ss_pred HHHHHHCCC
Confidence 999999875
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.89 E-value=1.1e-08 Score=104.50 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=51.6
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHH
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTI 82 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI 82 (250)
..++++++|+|++++|+|++++++..+. . .+..|+||+++|+.+++||+|+|++++|
T Consensus 503 ~~~~~a~~G~rvlavA~k~~~~~~~~~~---------------~--------~~~~e~~l~~lGli~l~Dp~R~~a~~aI 559 (903)
T PRK15122 503 LAEAYNADGFRVLLVATREIPGGESRAQ---------------Y--------STADERDLVIRGFLTFLDPPKESAAPAI 559 (903)
T ss_pred HHHHHHhCCCEEEEEEEeccCccccccc---------------c--------ccccccCcEEEEEEeccCccHHHHHHHH
Confidence 3578999999999999999876432100 0 1235899999999999999999999999
Q ss_pred HHHhhcc
Q psy1679 83 ANLLLAV 89 (250)
Q Consensus 83 ~~l~~a~ 89 (250)
+.||+|+
T Consensus 560 ~~l~~aG 566 (903)
T PRK15122 560 AALRENG 566 (903)
T ss_pred HHHHHCC
Confidence 9999944
No 15
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.85 E-value=2.4e-08 Score=101.72 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHH
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTI 82 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI 82 (250)
.+++++++|+|++++|+|+++.++. . . .++.|+||+++|..+++||+|+|++++|
T Consensus 470 ~~~~~a~~G~rvlavA~~~~~~~~~------------~---~----------~~~~e~~l~~lGli~l~Dp~R~~~~~aI 524 (867)
T TIGR01524 470 MTAEMNRQGIRVIAVATKTLKVGEA------------D---F----------TKTDEEQLIIEGFLGFLDPPKESTKEAI 524 (867)
T ss_pred HHHHHHhcCCEEEEEEEeccCcccc------------c---c----------cccccCCcEEEEEEEeeCCCchhHHHHH
Confidence 4578999999999999999875431 0 0 0123889999999999999999999999
Q ss_pred HHHhhcc
Q psy1679 83 ANLLLAV 89 (250)
Q Consensus 83 ~~l~~a~ 89 (250)
+.||+|+
T Consensus 525 ~~l~~aG 531 (867)
T TIGR01524 525 AALFKNG 531 (867)
T ss_pred HHHHHCC
Confidence 9999943
No 16
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.74 E-value=4.1e-08 Score=100.30 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHH
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTI 82 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI 82 (250)
..++++++|+|++++|+|+++.++. . . + ...|+||+++|..+++||+|+|++++|
T Consensus 505 ~~~~~a~~G~rvlavA~k~~~~~~~------------~---~-~---------~~~e~~l~~lGli~~~Dp~R~~a~~aI 559 (902)
T PRK10517 505 VTDTLNRQGLRVVAVATKYLPAREG------------D---Y-Q---------RADESDLILEGYIAFLDPPKETTAPAL 559 (902)
T ss_pred HHHHHHhcCCEEEEEEEecCCcccc------------c---c-c---------cccccCceeeehHhhhCcchhhHHHHH
Confidence 3577999999999999998865321 0 0 0 113889999999999999999999999
Q ss_pred HHHhhcc
Q psy1679 83 ANLLLAV 89 (250)
Q Consensus 83 ~~l~~a~ 89 (250)
+.||+|+
T Consensus 560 ~~l~~aG 566 (902)
T PRK10517 560 KALKASG 566 (902)
T ss_pred HHHHHCC
Confidence 9999943
No 17
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.08 E-value=4e-06 Score=84.50 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=46.4
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHH
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTI 82 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI 82 (250)
.+++++++|+|++++|+|. .|++|+++|..+++||+|+|++++|
T Consensus 408 ~~~~~~~~G~rvl~vA~~~------------------------------------~e~~l~~~Gli~l~Dp~R~~a~~aI 451 (755)
T TIGR01647 408 KVDELASRGYRALGVARTD------------------------------------EEGRWHFLGLLPLFDPPRHDTKETI 451 (755)
T ss_pred HHHHHHhCCCEEEEEEEEc------------------------------------CCCCcEEEEEeeccCCChhhHHHHH
Confidence 4578899999999999881 1678999999999999999999999
Q ss_pred HHHhhccc
Q psy1679 83 ANLLLAVT 90 (250)
Q Consensus 83 ~~l~~a~~ 90 (250)
+.||+|++
T Consensus 452 ~~l~~aGI 459 (755)
T TIGR01647 452 ERARHLGV 459 (755)
T ss_pred HHHHHCCC
Confidence 99999876
No 18
>KOG0208|consensus
Probab=97.77 E-value=3.3e-05 Score=77.78 Aligned_cols=70 Identities=23% Similarity=0.491 Sum_probs=58.0
Q ss_pred ChHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHH
Q psy1679 1 MDDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPK 80 (250)
Q Consensus 1 ~~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~e 80 (250)
++.+++|+.+|+|++++|+|.++.. .|. +|+.. .| +.+|+||+++|..-+|.||++.-++
T Consensus 653 ~evl~~Yt~~GfRVIAlA~K~L~~~---~~~----~~~~~-----~R--------d~vEs~l~FlGLiVmeNkLK~~T~~ 712 (1140)
T KOG0208|consen 653 QEVLKEYTHQGFRVIALASKELETS---TLQ----KAQKL-----SR--------DTVESNLEFLGLIVMENKLKEETKR 712 (1140)
T ss_pred HHHHHHHHhCCeEEEEEecCccCcc---hHH----HHhhc-----cH--------hhhhccceeeEEEEeecccccccHH
Confidence 3678999999999999999999765 342 23222 23 5789999999999999999999999
Q ss_pred HHHHHhhccc
Q psy1679 81 TIANLLLAVT 90 (250)
Q Consensus 81 tI~~l~~a~~ 90 (250)
+|+.|++|-+
T Consensus 713 VI~eL~~AnI 722 (1140)
T KOG0208|consen 713 VIDELNRANI 722 (1140)
T ss_pred HHHHHHhhcc
Confidence 9999999654
No 19
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.21 E-value=0.0005 Score=68.50 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=28.4
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
|++++|..+++|++|+|++|+|+.||++++
T Consensus 433 ~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI 462 (679)
T PRK01122 433 DNRVLGVIYLKDIVKPGIKERFAELRKMGI 462 (679)
T ss_pred CCeEEEEEEEeccCchhHHHHHHHHHHCCC
Confidence 678999999999999999999999999876
No 20
>KOG0209|consensus
Probab=97.14 E-value=0.00069 Score=67.64 Aligned_cols=63 Identities=25% Similarity=0.397 Sum_probs=50.8
Q ss_pred HHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHHHH
Q psy1679 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTIAN 84 (250)
Q Consensus 5 ~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI~~ 84 (250)
.+|+++|.|+|++|+|.+..-. +++...++ .+.+|+||++-|..-+.=||++|..+||+.
T Consensus 627 k~ytR~GsRVLALg~K~l~~~~------------------~~q~rd~~--Re~vEsdLtFaGFlif~CPlK~Ds~~~I~e 686 (1160)
T KOG0209|consen 627 KRYTRQGSRVLALGYKPLGDMM------------------VSQVRDLK--REDVESDLTFAGFLIFSCPLKPDSKKTIKE 686 (1160)
T ss_pred HHHhhccceEEEEecccccccc------------------hhhhhhhh--hhhhhhcceeeeeEEEeCCCCccHHHHHHH
Confidence 5799999999999999996321 11111111 267899999999999999999999999999
Q ss_pred Hhh
Q psy1679 85 LLL 87 (250)
Q Consensus 85 l~~ 87 (250)
|.+
T Consensus 687 l~~ 689 (1160)
T KOG0209|consen 687 LNN 689 (1160)
T ss_pred Hhc
Confidence 999
No 21
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.00 E-value=0.00087 Score=66.74 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.7
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
|.+++|..+++|++|+|++|+|+.||++++
T Consensus 434 ~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi 463 (675)
T TIGR01497 434 DNRIYGVIYLKDIVKGGIKERFAQLRKMGI 463 (675)
T ss_pred CCEEEEEEEecccchhHHHHHHHHHHHCCC
Confidence 358999999999999999999999999776
No 22
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.75 E-value=0.0019 Score=64.38 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=29.1
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
.|++++|..+++||+|+|++|+|+.||++++
T Consensus 428 ~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI 458 (673)
T PRK14010 428 EDNEILGVIYLKDVIKDGLVERFRELREMGI 458 (673)
T ss_pred ECCEEEEEEEeecCCcHHHHHHHHHHHHCCC
Confidence 4789999999999999999999999999776
No 23
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.69 E-value=0.0023 Score=61.53 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=29.2
Q ss_pred EEEEEeeeecCCCCChHHHHHHHhhccceeeeeec
Q psy1679 63 DLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCG 97 (250)
Q Consensus 63 ~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~g 97 (250)
+++|..+++|++|+|++++|+.|++++.---..+|
T Consensus 337 ~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltG 371 (499)
T TIGR01494 337 TLLGLLGLEDPLRDDAKETISELREAGIRVIMLTG 371 (499)
T ss_pred eEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcC
Confidence 69999999999999999999999998763333333
No 24
>KOG0203|consensus
Probab=95.75 E-value=0.002 Score=64.48 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
.+|.++|..++-||+|+.||+++++||.|++
T Consensus 577 ~nl~FlGl~s~idPPR~~vP~Av~~CrsAGI 607 (1019)
T KOG0203|consen 577 DNLRFLGLISMIDPPRAAVPDAVGKCRSAGI 607 (1019)
T ss_pred hhccccchhhccCCCcccCchhhhhhhhhCc
Confidence 4799999999999999999999999999543
No 25
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=94.78 E-value=0.79 Score=37.54 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=48.2
Q ss_pred chhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1679 105 DPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTF 179 (250)
Q Consensus 105 d~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~ 179 (250)
....+..-|++...+|.+.+|.-. +++.+|+.|. +.++...++++.+..-...|+.+++++++..+...
T Consensus 5 ~~~qiL~inli~d~~~a~al~~e~---~~~~im~r~P---r~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~ 73 (182)
T PF00689_consen 5 TPIQILWINLITDLLPALALGFEP---PDPDIMKRPP---RDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGL 73 (182)
T ss_dssp -HHHHHHHHHTTTHHHHHHGGGSS----STTGGGS------TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCc---chhhhhhccc---cccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999987654 4555666665 35567889988877778889998888877765544
No 26
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.79 E-value=0.12 Score=52.38 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=28.5
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
.|.+++|..+++|++++|++++|+.||+.++
T Consensus 555 ~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi 585 (741)
T PRK11033 555 RNDDVLGLIALQDTLRADARQAISELKALGI 585 (741)
T ss_pred ECCEEEEEEEEecCCchhHHHHHHHHHHCCC
Confidence 3778999999999999999999999999765
No 27
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.59 E-value=0.57 Score=38.77 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=32.1
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccceeeeeec
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCG 97 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~g 97 (250)
+..++|..++.|++++|++++|+.|+++++=..+.+|
T Consensus 115 ~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TG 151 (215)
T PF00702_consen 115 NLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTG 151 (215)
T ss_dssp SHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEES
T ss_pred cCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeec
Confidence 7999999999999999999999999999774444444
No 28
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=88.10 E-value=0.8 Score=44.77 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=28.8
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhcc-c
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAV-T 90 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~-~ 90 (250)
.|.+++|..+++|++++|++|+|+.|++.+ .
T Consensus 371 ~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i 402 (556)
T TIGR01525 371 VDGELLGVIALRDQLRPEAKEAIAALKRAGGI 402 (556)
T ss_pred ECCEEEEEEEecccchHhHHHHHHHHHHcCCC
Confidence 477999999999999999999999999988 5
No 29
>KOG0205|consensus
Probab=85.33 E-value=0.43 Score=47.35 Aligned_cols=57 Identities=28% Similarity=0.408 Sum_probs=46.9
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHH
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTI 82 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI 82 (250)
.+++||+.|||.|.+|+|.++++.- +.=+..-+++|....-||+|.+..|||
T Consensus 450 ~id~~AeRGlRSLgVArq~v~e~~~----------------------------~~~g~pw~~~gllp~fdpprhdsa~ti 501 (942)
T KOG0205|consen 450 IIDKFAERGLRSLAVARQEVPEKTK----------------------------ESPGGPWEFVGLLPLFDPPRHDSAETI 501 (942)
T ss_pred HHHHHHHhcchhhhhhhhccccccc----------------------------cCCCCCcccccccccCCCCccchHHHH
Confidence 4679999999999999999876420 112566889999999999999999999
Q ss_pred HHHhh
Q psy1679 83 ANLLL 87 (250)
Q Consensus 83 ~~l~~ 87 (250)
+.-+.
T Consensus 502 rral~ 506 (942)
T KOG0205|consen 502 RRALN 506 (942)
T ss_pred HHHHh
Confidence 97666
No 30
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=82.68 E-value=1.1 Score=43.78 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.1
Q ss_pred hhcCcEEEEEeeeecCCCCChHHHHHHHhhccc-eeeeeec
Q psy1679 58 LESDLDLVGVTAIEDKLQDDVPKTIANLLLAVT-LYALFCG 97 (250)
Q Consensus 58 iE~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~-~f~~~~g 97 (250)
+.+|..++|..+.+|++++|++|+|+.|++++. =....+|
T Consensus 347 v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTg 387 (536)
T TIGR01512 347 VARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTG 387 (536)
T ss_pred EEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcC
Confidence 456899999999999999999999999999876 3334443
No 31
>PRK10671 copA copper exporting ATPase; Provisional
Probab=81.54 E-value=2.2 Score=43.84 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=27.3
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
|-.++|..+++|++++|++++|+.|++.++
T Consensus 638 ~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi 667 (834)
T PRK10671 638 DGKAAALLAIRDPLRSDSVAALQRLHKAGY 667 (834)
T ss_pred CCEEEEEEEccCcchhhHHHHHHHHHHCCC
Confidence 557889999999999999999999999765
No 32
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=79.13 E-value=1.6 Score=42.85 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=29.9
Q ss_pred hhcCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 58 LESDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 58 iE~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
+..|.+++|..+++|++++|++|+|+.||+.+.
T Consensus 390 ~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi 422 (562)
T TIGR01511 390 VAVNGELAGVFALEDQLRPEAKEVIQALKRRGI 422 (562)
T ss_pred EEECCEEEEEEEecccccHHHHHHHHHHHHcCC
Confidence 446788999999999999999999999999776
No 33
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=75.73 E-value=3 Score=42.25 Aligned_cols=30 Identities=40% Similarity=0.459 Sum_probs=27.1
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
|=+++|+.+++|++|++.+|+|+.||+.++
T Consensus 525 dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi 554 (713)
T COG2217 525 DGKLVGVIALADELRPDAKEAIAALKALGI 554 (713)
T ss_pred CCEEEEEEEEeCCCChhHHHHHHHHHHCCC
Confidence 447999999999999999999999999655
No 34
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=66.11 E-value=16 Score=32.32 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=56.8
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc---cccHHHHHHHHHHhhhcCcEEE----EEeeeecCC
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI---GEAKEEKLNHLYDELESDLDLV----GVTAIEDKL 74 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~---~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~L 74 (250)
+.+++.++.|-..+.+- +++.+|.+++.+.-++.....=. ..-.+++++++.+.- .++.++ |.||.++.+
T Consensus 110 ~F~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a-~gFIY~vS~~GvTG~~~~~ 186 (263)
T CHL00200 110 KFIKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA-PGCIYLVSTTGVTGLKTEL 186 (263)
T ss_pred HHHHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEcCCCCCCCCccc
Confidence 45677888888877665 77778877776665554322000 112456666665553 555554 999999999
Q ss_pred CCChHHHHHHHhh
Q psy1679 75 QDDVPKTIANLLL 87 (250)
Q Consensus 75 q~~V~etI~~l~~ 87 (250)
.+++.+.++.+|+
T Consensus 187 ~~~~~~~i~~ir~ 199 (263)
T CHL00200 187 DKKLKKLIETIKK 199 (263)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999997
No 35
>PF06064 Gam: Host-nuclease inhibitor protein Gam; InterPro: IPR009274 The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage [].; PDB: 2UV1_A 2UUZ_A.
Probab=60.69 E-value=18 Score=26.40 Aligned_cols=31 Identities=39% Similarity=0.443 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcE
Q psy1679 25 NFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLD 63 (250)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~ 63 (250)
-|-+.|...|++. .||++-.++.+.+|++|-
T Consensus 10 iE~~~WarHYqqi--------aREE~EaELADdlekglp 40 (98)
T PF06064_consen 10 IEEQSWARHYQQI--------AREEKEAELADDLEKGLP 40 (98)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHccCh
Confidence 3668899888876 477888899999999874
No 36
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=59.93 E-value=10 Score=33.59 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhc-cc--cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCCCC
Q psy1679 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMEN-EI--GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQDD 77 (250)
Q Consensus 5 ~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~-~~--~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq~~ 77 (250)
++.++.|..-+.+. +++.||.+++.+.-++..... .. ..-.+++++++.+. -+++.++ |.||...++.++
T Consensus 109 ~~~~~aGvdGlIip--DLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~-a~gFiY~vs~~GvTG~~~~~~~~ 185 (259)
T PF00290_consen 109 KEAKEAGVDGLIIP--DLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQ-ASGFIYLVSRMGVTGSRTELPDE 185 (259)
T ss_dssp HHHHHHTEEEEEET--TSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH--SSEEEEESSSSSSSTTSSCHHH
T ss_pred HHHHHcCCCEEEEc--CCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh-CCcEEEeeccCCCCCCcccchHH
Confidence 44455677766665 777888777765444332220 00 11356677766544 5777775 899999999999
Q ss_pred hHHHHHHHhh
Q psy1679 78 VPKTIANLLL 87 (250)
Q Consensus 78 V~etI~~l~~ 87 (250)
+.+.|+.+|+
T Consensus 186 l~~~i~~ik~ 195 (259)
T PF00290_consen 186 LKEFIKRIKK 195 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 37
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.58 E-value=33 Score=30.52 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc---cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCCC
Q psy1679 4 LNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI---GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQD 76 (250)
Q Consensus 4 ~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~---~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq~ 76 (250)
+++-++.|.--+++. +++.||-+++.+..++.....=. ..--+++++++.+ ..+++++. |+||.+++...
T Consensus 115 ~~~~~~~GvdGlivp--DLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~-~a~GFiY~vs~~GvTG~~~~~~~ 191 (265)
T COG0159 115 LRRAKEAGVDGLLVP--DLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAE-AASGFIYYVSRMGVTGARNPVSA 191 (265)
T ss_pred HHHHHHcCCCEEEeC--CCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-hCCCcEEEEecccccCCCcccch
Confidence 345566677767766 88888877776555433221000 1123455555543 36666665 99999999888
Q ss_pred ChHHHHHHHhh
Q psy1679 77 DVPKTIANLLL 87 (250)
Q Consensus 77 ~V~etI~~l~~ 87 (250)
.|++-|+.+|+
T Consensus 192 ~~~~~v~~vr~ 202 (265)
T COG0159 192 DVKELVKRVRK 202 (265)
T ss_pred hHHHHHHHHHH
Confidence 89999999997
No 38
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=57.63 E-value=28 Score=23.78 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=37.6
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhh
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELE 59 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE 59 (250)
+.+..|+.+.+| |-++++|.+.+.+-|+++... ..+-++.++....-+-
T Consensus 5 ~~l~~Fa~rAfR------Rp~~~~e~~~~~~~~~~~~~~---g~~~~~a~~~~l~aiL 53 (64)
T PF07637_consen 5 EILRRFARRAFR------RPLTDEEVDRYLALYDSARAQ---GEDFEEALKEALQAIL 53 (64)
T ss_pred HHHHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 457888999888 778899999999999988876 6666777666555443
No 39
>KOG0207|consensus
Probab=56.53 E-value=11 Score=38.86 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=26.7
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
|=+++|+.++||++|+|+..+|+.||+-++
T Consensus 711 n~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi 740 (951)
T KOG0207|consen 711 NGQLVGVFALEDQVRPDAALAVAELKSMGI 740 (951)
T ss_pred CCEEEEEEEeccccchhHHHHHHHHHhcCc
Confidence 346899999999999999999999999554
No 40
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.74 E-value=57 Score=28.76 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc---cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCCC
Q psy1679 4 LNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI---GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQD 76 (250)
Q Consensus 4 ~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~---~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq~ 76 (250)
+++-++.|-.-+.+- +++.+|.+++.+.-++.....=. -.-.+++++.+.+ .-.++.++ |.||.....-+
T Consensus 110 ~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~-~s~gfIY~vs~~GvTG~~~~~~~ 186 (258)
T PRK13111 110 AADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIAS-HASGFVYYVSRAGVTGARSADAA 186 (258)
T ss_pred HHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-hCCCcEEEEeCCCCCCcccCCCc
Confidence 455566677766664 78888887777655443322000 1123455555433 36776655 88999888889
Q ss_pred ChHHHHHHHhhc
Q psy1679 77 DVPKTIANLLLA 88 (250)
Q Consensus 77 ~V~etI~~l~~a 88 (250)
++.+.++.+|++
T Consensus 187 ~~~~~i~~vk~~ 198 (258)
T PRK13111 187 DLAELVARLKAH 198 (258)
T ss_pred cHHHHHHHHHhc
Confidence 999999999984
No 41
>PLN02591 tryptophan synthase
Probab=48.03 E-value=51 Score=28.98 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc---cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCC
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI---GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQ 75 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~---~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq 75 (250)
-+++.++.|-.-+.+. +++.||-+++.+.-++.....=. -.-.+++++++.+. -+++.++ |+||.++.+.
T Consensus 98 F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~-~~gFIY~Vs~~GvTG~~~~~~ 174 (250)
T PLN02591 98 FMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA-SEGFVYLVSSTGVTGARASVS 174 (250)
T ss_pred HHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh-CCCcEEEeeCCCCcCCCcCCc
Confidence 3456667777777776 78888887777666554322100 11245566666555 4565553 7899999999
Q ss_pred CChHHHHHHHhhc
Q psy1679 76 DDVPKTIANLLLA 88 (250)
Q Consensus 76 ~~V~etI~~l~~a 88 (250)
+++.+.++.+|+.
T Consensus 175 ~~~~~~i~~vk~~ 187 (250)
T PLN02591 175 GRVESLLQELKEV 187 (250)
T ss_pred hhHHHHHHHHHhc
Confidence 9999999999984
No 42
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.61 E-value=36 Score=32.49 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEE--EEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLV--GVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~--G~t~ieD~Lq~~V~ 79 (250)
+.++.+++.|.|.+.++....+++..+...+.+. .++-.+.++.+ . +.++... -+.|.-+.-.+++-
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~--------~~~~~~~i~~~-~--~~Gi~v~~~~IiGlPget~e~~~ 356 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILKNIKKGLT--------VEIARRFTRDC-H--KLGIKVHGTFILGLPGETRETIR 356 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCC--------HHHHHHHHHHH-H--HCCCeEEEEEEEeCCCCCHHHHH
Confidence 4578889999999999998888876554433221 11111222222 2 2344433 34577777788899
Q ss_pred HHHHHHhhccc---eeeeeecccCccccch
Q psy1679 80 KTIANLLLAVT---LYALFCGFSAQTIFDP 106 (250)
Q Consensus 80 etI~~l~~a~~---~f~~~~gfSg~~lyd~ 106 (250)
+|++.+++... -+..++-+-||++|+.
T Consensus 357 ~ti~~~~~l~~~~~~~~~l~P~PGT~l~~~ 386 (472)
T TIGR03471 357 KTIDFAKELNPHTIQVSLAAPYPGTELYDQ 386 (472)
T ss_pred HHHHHHHhcCCCceeeeecccCCCcHHHHH
Confidence 99998887443 4455677788888764
No 43
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=44.98 E-value=1.4e+02 Score=31.87 Aligned_cols=67 Identities=6% Similarity=-0.038 Sum_probs=49.1
Q ss_pred cchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1679 104 FDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFVIYGTF 179 (250)
Q Consensus 104 yd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~~~~~~ 179 (250)
+.++.+...|++..++|.+.+|.-. |.+.+++.|. ....+++..+......+++|.+..+.......
T Consensus 889 l~~~Q~l~i~li~~~~~~l~l~~~~---p~~~l~~~~P------~~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~ 955 (1054)
T TIGR01657 889 LGDGQFLTIDLLLIFPVALLMSRNK---PLKKLSKERP------PSNLFSVYILTSVLIQFVLHILSQVYLVFELH 955 (1054)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCC---chhhcCCCCC------CccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677888887777777765443 6666776654 36899999988888999999888777765544
No 44
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=42.31 E-value=39 Score=22.90 Aligned_cols=27 Identities=30% Similarity=0.875 Sum_probs=20.5
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHHHH
Q psy1679 214 FDTQYWTYINTLSMLVSIASYFVFTYV 240 (250)
Q Consensus 214 l~~~~wt~~~~~~i~~Si~~~~~~~~i 240 (250)
..++.|+.+..+.+...++++++.+.+
T Consensus 10 FtskFW~YFtLi~M~lti~~~~Iv~si 36 (64)
T PF03579_consen 10 FTSKFWTYFTLIFMMLTIGFFFIVTSI 36 (64)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHH
Confidence 356789999998888888887765443
No 45
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=39.68 E-value=52 Score=23.02 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=16.1
Q ss_pred cChhHHHHHHHHHHHHhhh
Q psy1679 22 VDENFYNRWKLKHSQIVME 40 (250)
Q Consensus 22 l~~~~~~~~~~~~~~a~~~ 40 (250)
.+|++|+.|.+.|+.....
T Consensus 38 ~~P~eyQq~q~~~~AieAA 56 (68)
T PF08988_consen 38 GTPQEYQQLQQQYDAIEAA 56 (68)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5799999999998877766
No 46
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.45 E-value=1.4e+02 Score=25.84 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=53.2
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc---cccHHHHHHHHHHhhhcCcEEE----EEeeeecCC
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI---GEAKEEKLNHLYDELESDLDLV----GVTAIEDKL 74 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~---~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~L 74 (250)
+.++++++.|-.-+++- +++.|+.+++.+.-++.....-. -.-.+++++.+.+. ..++.++ |.||.+...
T Consensus 95 ~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~-~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 95 RFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL-ASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh-CCCCEEEEeCCCCCCCccCC
Confidence 35677888888877774 45566766777666655432000 11234455554432 4565443 688888878
Q ss_pred CCChHHHHHHHhhc
Q psy1679 75 QDDVPKTIANLLLA 88 (250)
Q Consensus 75 q~~V~etI~~l~~a 88 (250)
.+++.+.|+.+|+.
T Consensus 172 ~~~~~~~i~~lr~~ 185 (242)
T cd04724 172 PDDLKELIKRIRKY 185 (242)
T ss_pred ChhHHHHHHHHHhc
Confidence 88899999999974
No 47
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=36.96 E-value=37 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHHhhhccccc-cHHHHHHHHHH
Q psy1679 23 DENFYNRWKLKHSQIVMENEIGE-AKEEKLNHLYD 56 (250)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~-~r~~~l~~~~~ 56 (250)
+.++..+|.+.|.-.... .. +|++.++.+.+
T Consensus 5 s~~~L~~wL~~~gi~~~~---~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPK---SAKTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCC---CCCCHHHHHHHHHH
Confidence 567889999998766555 44 78888877644
No 48
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=36.74 E-value=86 Score=25.05 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=57.6
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhh-cCcEEEEEeeeecCCCCChHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELE-SDLDLVGVTAIEDKLQDDVPK 80 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE-~~L~l~G~t~ieD~Lq~~V~e 80 (250)
+.+++.++.|.+.+.++....+++.++..... .+ .+++.+.++.+.+. . ..+...=+.|+-+.-.+++++
T Consensus 101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~-----~~---~~~~~~~i~~~~~~-g~~~v~~~~~~g~~~~~~~~~~~ 171 (216)
T smart00729 101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRG-----HT---VEDVLEAVEKLREA-GPIKVSTDLIVGLPGETEEDFEE 171 (216)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHHHHhcCC-----CC---HHHHHHHHHHHHHh-CCcceEEeEEecCCCCCHHHHHH
Confidence 46778888898888888887777655432111 11 23334444444322 2 223333344554445688899
Q ss_pred HHHHHhhccc---eeeeeecccCccccchh
Q psy1679 81 TIANLLLAVT---LYALFCGFSAQTIFDPM 107 (250)
Q Consensus 81 tI~~l~~a~~---~f~~~~gfSg~~lyd~~ 107 (250)
.++.+++.+. .+..+....|+++++.+
T Consensus 172 ~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 172 TLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred HHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 9998887554 55667777888776544
No 49
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.47 E-value=1.3e+02 Score=29.03 Aligned_cols=95 Identities=14% Similarity=0.238 Sum_probs=59.5
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEE--EEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLV--GVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~--G~t~ieD~Lq~~V~ 79 (250)
+.+..+++.|.+.+-++....+++..+...+.+. .++-.+.++.+. +.++... =++|..+.-.+++.
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t--------~~~~~~ai~~l~---~~Gi~~~~~~I~G~P~et~e~~~ 356 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT--------TSTNKEAIRLLR---QHNILSEAQFITGFENETDETFE 356 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC--------HHHHHHHHHHHH---HCCCcEEEEEEEECCCCCHHHHH
Confidence 3567788889999999988888776544433221 111112222221 2233222 25677777788899
Q ss_pred HHHHHHhhccc---eeeeeecccCccccchh
Q psy1679 80 KTIANLLLAVT---LYALFCGFSAQTIFDPM 107 (250)
Q Consensus 80 etI~~l~~a~~---~f~~~~gfSg~~lyd~~ 107 (250)
+|++.+++... -+..++=+-||++|+..
T Consensus 357 ~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~~ 387 (497)
T TIGR02026 357 ETYRQLLDWDPDQANWLMYTPWPFTSLFGEL 387 (497)
T ss_pred HHHHHHHHcCCCceEEEEecCCCCcHHHHHH
Confidence 99998887543 44667788899988754
No 50
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=33.36 E-value=1.2e+02 Score=26.51 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=47.0
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhcc-c--cccHHHHHHHHHHhhhcCcEEE----EEeeeecCC
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENE-I--GEAKEEKLNHLYDELESDLDLV----GVTAIEDKL 74 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~-~--~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~L 74 (250)
+.++++++.|-.-+.+- +++.++.+++.+.-++.....- . -.-.+++++++.+. -.++.++ |.||..+.+
T Consensus 106 ~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~-~~gfiy~vs~~G~TG~~~~~ 182 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK-SQGFVYLVSRAGVTGARNRA 182 (256)
T ss_pred HHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh-CCCCEEEEECCCCCCCcccC
Confidence 34566667676655444 4555665555554444321100 0 11234555555554 3334443 667877778
Q ss_pred CCChHHHHHHHhhc
Q psy1679 75 QDDVPKTIANLLLA 88 (250)
Q Consensus 75 q~~V~etI~~l~~a 88 (250)
.+++.+.|+.+|+.
T Consensus 183 ~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 183 ASALNELVKRLKAY 196 (256)
T ss_pred ChhHHHHHHHHHhh
Confidence 88888888888874
No 51
>PF15460 SAS4: Something about silencing, SAS, complex subunit 4
Probab=30.31 E-value=49 Score=25.02 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=28.7
Q ss_pred cChhHHHHHHHHHHHHhhhccccccHHH--------HHHHHHHhhhcC--cEEE-EEeeeecC
Q psy1679 22 VDENFYNRWKLKHSQIVMENEIGEAKEE--------KLNHLYDELESD--LDLV-GVTAIEDK 73 (250)
Q Consensus 22 l~~~~~~~~~~~~~~a~~~~~~~~~r~~--------~l~~~~~~iE~~--L~l~-G~t~ieD~ 73 (250)
+|.+-|..+.++....+.. +.|+|. .+..+.+.|... +..+ |+|+|.|+
T Consensus 3 L~D~~Y~~~Hrrmer~Ekr---m~n~ek~r~~~E~d~L~~lle~L~~~dW~r~l~~iT~I~d~ 62 (101)
T PF15460_consen 3 LPDSLYEPFHRRMERQEKR---MRNIEKERAQHEKDRLQRLLEKLQGHDWLRVLPGITGINDP 62 (101)
T ss_pred CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhccccccCc
Confidence 5667788887777666555 433221 233333444332 3344 99999996
No 52
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=30.15 E-value=1.9e+02 Score=22.58 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=54.0
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+.++..++.|..++.++..-.+++.+.... ..... .+++.+.++++.+. ......--+.|..+.-+++..++
T Consensus 89 ~~~~~l~~~g~~~i~i~le~~~~~~~~~~~----~~~~~---~~~~~~~i~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~ 160 (204)
T cd01335 89 ELLKELKELGLDGVGVSLDSGDEEVADKIR----GSGES---FKERLEALKELREA-GLGLSTTLLVGLGDEDEEDDLEE 160 (204)
T ss_pred HHHHHHHhCCCceEEEEcccCCHHHHHHHh----cCCcC---HHHHHHHHHHHHHc-CCCceEEEEEecCCChhHHHHHH
Confidence 456677777888888888888777655443 00111 22333334443332 23333333444444336899999
Q ss_pred HHHHhhcc-c---eeeeeecccCcccc
Q psy1679 82 IANLLLAV-T---LYALFCGFSAQTIF 104 (250)
Q Consensus 82 I~~l~~a~-~---~f~~~~gfSg~~ly 104 (250)
++.+.+.. . .+..++-.-|++++
T Consensus 161 ~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 161 LELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHhhcCcchhhhhhhcccCCCeee
Confidence 99999875 2 44445555566655
No 53
>PRK07094 biotin synthase; Provisional
Probab=29.50 E-value=2.3e+02 Score=25.31 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=57.2
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCc--EEEEEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL--DLVGVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L--~l~G~t~ieD~Lq~~V~ 79 (250)
+.+..+.+.|+..+.++....+++.++...+. .+ .+++.+.++.+ -+.++ ..-.++|+-..-.+++.
T Consensus 130 e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~-----~s---~~~~~~~i~~l---~~~Gi~v~~~~iiGlpget~ed~~ 198 (323)
T PRK07094 130 EEYKAWKEAGADRYLLRHETADKELYAKLHPG-----MS---FENRIACLKDL---KELGYEVGSGFMVGLPGQTLEDLA 198 (323)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhCCC-----CC---HHHHHHHHHHH---HHcCCeecceEEEECCCCCHHHHH
Confidence 45677788888888888877777666544321 11 22333333332 23344 33345676455558999
Q ss_pred HHHHHHhhccc---eeeeeecccCccccc
Q psy1679 80 KTIANLLLAVT---LYALFCGFSAQTIFD 105 (250)
Q Consensus 80 etI~~l~~a~~---~f~~~~gfSg~~lyd 105 (250)
++++.+++-.. -++.+.-+-||++++
T Consensus 199 ~~l~~l~~l~~~~v~~~~~~P~pgTpl~~ 227 (323)
T PRK07094 199 DDILFLKELDLDMIGIGPFIPHPDTPLKD 227 (323)
T ss_pred HHHHHHHhCCCCeeeeeccccCCCCCccc
Confidence 99999998543 455566677888876
No 54
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.03 E-value=62 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=27.6
Q ss_pred hHHHHHhhhccceeEEE----------EEEcChhHHHHHHHHHHHHh
Q psy1679 2 DDLNNFASDGLRTLVLA----------VRDVDENFYNRWKLKHSQIV 38 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a----------~k~l~~~~~~~~~~~~~~a~ 38 (250)
+.+++..++|.|.+.+. .++++.++.+.|..+..++-
T Consensus 46 ~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipge~~~SW~~~l~~~g 92 (103)
T cd03413 46 DVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAGDEPDSWKSILEAAG 92 (103)
T ss_pred HHHHHHHHcCCCEEEEEehhheecccchhcCCCCCchhHHHHHHHCC
Confidence 35677888898887764 57888887788987776653
No 55
>KOG2698|consensus
Probab=23.90 E-value=19 Score=30.83 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHHHHHHhhccceeeeeecccCccccchhhHHHHHhhhcchhhhhhhh
Q psy1679 47 KEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAV 126 (250)
Q Consensus 47 r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~gfSg~~lyd~~~l~~yN~~fTslP~i~~~i 126 (250)
+++.+.+....+-.=|.=+| |||.|+|.-.|=+...+|+.+|+= | |+.-+.-.+| -++
T Consensus 60 ~e~~lp~m~~a~~siL~~LG----Edp~RqgLl~TP~R~aKaMl~Ftk--g------y~~~l~dvlN----------~Av 117 (247)
T KOG2698|consen 60 SEEVLPEMANAYSSILKSLG----EDPNRQGLLKTPERAAKAMLYFTK--G------YEQNLNDVLN----------EAV 117 (247)
T ss_pred chhHhHHHHHHHHHHHHHhc----CCcchhhhhcCHHHHHHHHHHHHh--h------HHHHHHHHhh----------hhc
Confidence 44555555444443333344 999999999999999888877632 2 3332222333 379
Q ss_pred ccccCChhhhhcCCcccccccc
Q psy1679 127 LDQDVSDTNSIRYPKLYTPGMH 148 (250)
Q Consensus 127 fD~dv~~~~l~~~P~LY~~g~~ 148 (250)
||.|.++..+.+.=+.|..|.+
T Consensus 118 fdedhdEmvivkdiemfSmCEH 139 (247)
T KOG2698|consen 118 FDEDHDEMVIVKDIEMFSMCEH 139 (247)
T ss_pred cccccceeEEEecchHHHHhhh
Confidence 9999999877666555555544
No 56
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.94 E-value=1.2e+02 Score=25.83 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Q psy1679 25 NFYNRWKLKHSQIVMENEIGEAKEEKLNHLYD 56 (250)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~ 56 (250)
++-+++++++++|+.+ +.+++++++.+
T Consensus 79 k~m~efq~e~~eA~~~-----~d~~~lkkLq~ 105 (201)
T COG1422 79 KMMKEFQKEFREAQES-----GDMKKLKKLQE 105 (201)
T ss_pred HHHHHHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 3446666777777765 33455555544
No 57
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=22.64 E-value=91 Score=22.46 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 49 EKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 49 ~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+.+++..+.+.++|.=.|+.+-.|-....||++
T Consensus 31 ~~~~~~~d~lQ~~l~CCG~~~~~d~~~~~vP~S 63 (100)
T cd03154 31 KSVKKSLEKFQKELKCCGLVNGADDWGNDIPAS 63 (100)
T ss_pred HHHHHHHHHHHHcCCCCCCCCchhhccCCCCCC
Confidence 346677788888888888877555444456643
No 58
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=22.59 E-value=1.7e+02 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=33.4
Q ss_pred cceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCc
Q psy1679 12 LRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL 62 (250)
Q Consensus 12 lRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L 62 (250)
=++.+++-.-..+++.++-.+.-.+|... .++++.+..+....+|.++
T Consensus 74 n~V~Ilad~ae~~edid~~~~~l~~~~~~---~~~~~~~~r~~~~~le~~~ 121 (131)
T PRK06228 74 PDVLVSVRNAIGGTDLGELREAVEQEFLT---LDERERSVRSALAKLESGF 121 (131)
T ss_pred CEEEEEEceeEchhhHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHH
Confidence 45667777777788888887777777666 6666666666666666553
No 59
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=22.21 E-value=40 Score=26.50 Aligned_cols=21 Identities=33% Similarity=0.830 Sum_probs=12.8
Q ss_pred hhccceeEEEEEEcChhHHHHH
Q psy1679 9 SDGLRTLVLAVRDVDENFYNRW 30 (250)
Q Consensus 9 ~~GlRtL~~a~k~l~~~~~~~~ 30 (250)
++|+||++++.|.- +..|.++
T Consensus 18 ~EGFrT~~ic~~~r-~~~Y~~f 38 (124)
T PF06849_consen 18 DEGFRTIAICQKGR-EKFYRRF 38 (124)
T ss_dssp HTT--EEEEEETTC-HHHHHTT
T ss_pred HcCCcEEEEECCCC-cchhhhc
Confidence 59999999998643 4455443
No 60
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.04 E-value=1.2e+02 Score=22.75 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.5
Q ss_pred hcCcEEEEEeeeecCCCCChHHHHHHHhhc
Q psy1679 59 ESDLDLVGVTAIEDKLQDDVPKTIANLLLA 88 (250)
Q Consensus 59 E~~L~l~G~t~ieD~Lq~~V~etI~~l~~a 88 (250)
|.+-.++|++...++--+.+++.++.+|+.
T Consensus 48 ~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 48 EEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 556678888888777778888888888875
No 61
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=21.71 E-value=31 Score=32.89 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred hccceeEEEEEEcChhHHHHHHHHHHHHh---hhccccccHHHHHHH
Q psy1679 10 DGLRTLVLAVRDVDENFYNRWKLKHSQIV---MENEIGEAKEEKLNH 53 (250)
Q Consensus 10 ~GlRtL~~a~k~l~~~~~~~~~~~~~~a~---~~~~~~~~r~~~l~~ 53 (250)
.|-|.-+++.|-|+.|||++|++.-.+=. +..|-+++||..-++
T Consensus 241 RGrkh~afs~rGLSDEEYDEyKkiREer~g~YSIeEYLqdReRy~Ee 287 (535)
T PF05416_consen 241 RGRKHNAFSSRGLSDEEYDEYKKIREERGGKYSIEEYLQDRERYEEE 287 (535)
T ss_dssp -----------------------------------------------
T ss_pred CCcccccccccCCChhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 46777888999999999999975432211 113336666543333
No 62
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=21.64 E-value=3.6e+02 Score=20.26 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=42.5
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCc--EEEEEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL--DLVGVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L--~l~G~t~ieD~Lq~~V~ 79 (250)
+.++.+++.|..++-++....+++.+.+-. + .... .+.+.+.++.+. +.+. ....++++.+.-.+++.
T Consensus 91 ~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~---~-~~~~---~~~~~~~l~~l~---~~g~~~~~~~i~~~~~~~~~e~~ 160 (166)
T PF04055_consen 91 ELLDELKKLGVDRIRISLESLDEESVLRII---N-RGKS---FERVLEALERLK---EAGIPRVIIFIVGLPGENDEEIE 160 (166)
T ss_dssp HHHHHHHHTTCSEEEEEEBSSSHHHHHHHH---S-STSH---HHHHHHHHHHHH---HTTSETEEEEEEEBTTTSHHHHH
T ss_pred HHHHHHHhcCccEEecccccCCHHHhhhhh---c-CCCC---HHHHHHHHHHHH---HcCCCcEEEEEEEeCCCCHHHHH
Confidence 467888888989999998888776232211 1 0011 222223333332 3323 57777777777777777
Q ss_pred HHHHH
Q psy1679 80 KTIAN 84 (250)
Q Consensus 80 etI~~ 84 (250)
++++.
T Consensus 161 ~~~~~ 165 (166)
T PF04055_consen 161 ETIRF 165 (166)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 77764
No 63
>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN). PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=20.59 E-value=25 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 49 EKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 49 ~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+++.+..+.=+++|.+-+++|..++|.-+..++
T Consensus 6 ~~i~~fl~s~~~~l~le~cngf~RkLiyq~l~~ 38 (65)
T cd02637 6 ERIEAFLESEEDDLELEPCNGFQRKLIYQTLEQ 38 (65)
T ss_pred HHHHHHHhcCcccccccccccHHHHHHHHHHHH
Confidence 444455454489999999999999997776654
No 64
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.07 E-value=1.9e+02 Score=25.27 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=50.4
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEE--EEeeeecCCCCChH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLV--GVTAIEDKLQDDVP 79 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~--G~t~ieD~Lq~~V~ 79 (250)
+.+..+.+.|+..+.++.. .+++-+++.... .+ .+++.+.++.+ -+.++... .++|. +.=.+++.
T Consensus 124 e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~-----~s---~~~~~~ai~~l---~~~Gi~v~~~~i~Gl-~et~~d~~ 190 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHNLD-TSQEFYSNIIST-----HT---YDDRVDTLENA---KKAGLKVCSGGIFGL-GETVEDRI 190 (296)
T ss_pred HHHHHHHHcCCCEEEEccc-CCHHHHhhccCC-----CC---HHHHHHHHHHH---HHcCCEEEEeEEEeC-CCCHHHHH
Confidence 4566777888888888876 665555432210 11 22333333333 34455421 24555 33457888
Q ss_pred HHHHHHhhccc---eeeeeecccCccccc
Q psy1679 80 KTIANLLLAVT---LYALFCGFSAQTIFD 105 (250)
Q Consensus 80 etI~~l~~a~~---~f~~~~gfSg~~lyd 105 (250)
++++.+++... .+..+.-.-|+++.+
T Consensus 191 ~~~~~l~~l~~~~i~l~~l~p~~gT~l~~ 219 (296)
T TIGR00433 191 GLALALANLPPESVPINFLVKIKGTPLAD 219 (296)
T ss_pred HHHHHHHhCCCCEEEeeeeEEcCCCccCC
Confidence 88888887554 344445555676654
Done!