Query psy1679
Match_columns 250
No_of_seqs 158 out of 1539
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 22:08:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ar4_A Sarcoplasmic/endoplasmi 99.6 3.5E-15 1.2E-19 151.9 18.6 66 103-174 787-852 (995)
2 3ixz_A Potassium-transporting 99.4 3.6E-12 1.2E-16 130.2 14.8 70 2-88 550-619 (1034)
3 2zxe_A Na, K-ATPase alpha subu 99.4 1.5E-12 5.1E-17 133.0 10.0 69 2-87 545-613 (1028)
4 1mhs_A Proton pump, plasma mem 98.6 1.7E-08 5.8E-13 101.9 4.8 50 2-87 500-549 (920)
5 3b8c_A ATPase 2, plasma membra 98.6 5.6E-09 1.9E-13 105.1 0.2 61 2-90 445-505 (885)
6 3j09_A COPA, copper-exporting 96.9 0.00098 3.4E-08 65.6 6.1 33 58-90 520-552 (723)
7 3j08_A COPA, copper-exporting 96.8 0.0012 4.1E-08 64.1 6.0 32 59-90 443-474 (645)
8 3rfu_A Copper efflux ATPase; a 96.6 0.0027 9.2E-08 62.6 6.3 31 60-90 541-571 (736)
9 2uuz_A GAMS, HOST-nuclease inh 57.6 13 0.00045 26.2 4.0 30 25-62 11-40 (99)
10 3nav_A Tryptophan synthase alp 56.4 12 0.00042 32.0 4.6 84 3-89 117-207 (271)
11 1zw0_A Type III secretion prot 52.7 19 0.00064 24.1 3.9 19 22-40 36-54 (66)
12 3skx_A Copper-exporting P-type 39.8 26 0.00088 28.4 3.9 38 61-98 132-169 (280)
13 3a1c_A Probable copper-exporti 39.3 65 0.0022 26.7 6.5 37 62-98 152-188 (287)
14 2lkl_A Erythrocyte membrane pr 34.6 32 0.0011 23.5 2.9 34 25-61 48-81 (81)
15 2yj3_A Copper-transporting ATP 40.6 8.4 0.00029 32.1 0.0 38 60-97 123-160 (263)
16 3gwi_A Magnesium-transporting 34.0 19 0.00064 28.3 2.0 18 56-73 148-165 (170)
17 3vnd_A TSA, tryptophan synthas 33.6 42 0.0014 28.5 4.3 83 3-88 115-204 (267)
18 2uwj_E Type III export protein 29.2 60 0.0021 21.9 3.6 19 22-40 42-60 (70)
19 1ccw_A Protein (glutamate muta 28.6 41 0.0014 25.2 3.1 23 6-29 26-48 (137)
20 1i6z_A BAG-family molecular ch 25.3 55 0.0019 25.0 3.2 51 10-62 1-51 (135)
21 3tha_A Tryptophan synthase alp 25.1 19 0.00065 30.5 0.6 81 5-88 110-197 (252)
22 1qop_A Tryptophan synthase alp 22.3 1.1E+02 0.0038 25.4 5.0 83 4-89 115-204 (268)
23 2ekc_A AQ_1548, tryptophan syn 21.1 1.1E+02 0.0038 25.4 4.7 81 5-88 116-204 (262)
24 3aon_B V-type sodium ATPase su 20.6 84 0.0029 23.1 3.4 25 64-88 44-68 (115)
No 1
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.65 E-value=3.5e-15 Score=151.91 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=53.0
Q ss_pred ccchhhHHHHHhhhcchhhhhhhhccccCChhhhhcCCccccccccCCCcCHHHHHHHHHHHHHHHHHHHHH
Q psy1679 103 IFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNEREFVYCSLHGFYTSAVMFFV 174 (250)
Q Consensus 103 lyd~~~l~~yN~~fTslP~i~~~ifD~dv~~~~l~~~P~LY~~g~~~~~f~~~~F~~w~~~gi~~S~iiff~ 174 (250)
.+.++.+.++|++++++|.+.+|..+.| ++.+.+.|. .++...++++.++.|++.|++++++.++.
T Consensus 787 pl~~~qil~~nl~~d~~p~l~l~~~~~~--~~~m~~~P~----~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 852 (995)
T 3ar4_A 787 ALIPVQLLWVNLVTDGLPATALGFNPPD--LDIMDRPPR----SPKEPLISGWLFFRYMAIGGYVGAATVGA 852 (995)
T ss_dssp SSCHHHHHHHHHTTTHHHHHHHTTCCCC--TTGGGSCCC----CTTCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCCCC--hhHHhCCCC----CCcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999987754 345555564 34567999999999999999999887654
No 2
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.38 E-value=3.6e-12 Score=130.25 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=56.0
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
++.+++|++|+|||++|+|.++++++.++.. . ++ +..+.+|+||+++|++|++||+|++++++
T Consensus 550 ~~~~~~a~~G~RvLa~A~~~l~~~~~~~~~~-----------~-~~-----~~~~~~e~~l~~lGlv~i~Dp~r~~~~~a 612 (1034)
T 3ixz_A 550 TAYLSLGGLGERVLGFCQLYLSEKDYPPGYA-----------F-DV-----EAMNFPTSGLSFAGLVSMIDPPRATVPDA 612 (1034)
T ss_pred HHHHHHHhcCcHhheEeEEecChhhcccccc-----------c-ch-----hhhhccccCcEEEEEEeccCCCchhHHHH
Confidence 3567899999999999999998876644321 0 11 11245799999999999999999999999
Q ss_pred HHHHhhc
Q psy1679 82 IANLLLA 88 (250)
Q Consensus 82 I~~l~~a 88 (250)
|+.||+|
T Consensus 613 I~~l~~a 619 (1034)
T 3ixz_A 613 VLKCRTA 619 (1034)
T ss_pred HHHHHHc
Confidence 9999993
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.35 E-value=1.5e-12 Score=132.97 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=54.0
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
++++++|++|+|||++|+|.++++++.++ .. . +++ ..+.+|+||+++|++|++||+|+|+|++
T Consensus 545 ~~~~~~a~~G~RvL~~A~~~l~~~~~~~~--------~~---~-~~~-----~~~~~e~~l~~lG~i~i~Dplr~~~~~a 607 (1028)
T 2zxe_A 545 NAYLELGGLGERVLGFCHFALPEDKYNEG--------YP---F-DAD-----EPNFPTTDLCFVGLMAMIDPPRAAVPDA 607 (1028)
T ss_dssp HHHHHHHHTTCEEEEEEEEECCSTTSCTT--------CC---C-CTT-----TTCSCCSSEEEEEEEEEECCBCTTHHHH
T ss_pred HHHHHHHhcCCEEEEEEEEecCccccccc--------cc---c-chh-----hhhhhhcCeEEEeeeccCCCCChhHHHH
Confidence 35788999999999999999987654321 00 1 111 1134689999999999999999999999
Q ss_pred HHHHhh
Q psy1679 82 IANLLL 87 (250)
Q Consensus 82 I~~l~~ 87 (250)
|+.||+
T Consensus 608 I~~l~~ 613 (1028)
T 2zxe_A 608 VGKCRS 613 (1028)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=98.63 E-value=1.7e-08 Score=101.85 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=44.6
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+++++++++|+|||++|+|.. |++|+++|++|++||+|+|++++
T Consensus 500 ~~~~~~a~~G~RvL~vA~~~~------------------------------------e~~l~~lGli~i~Dp~R~ea~~a 543 (920)
T 1mhs_A 500 NKVAEFATRGFRSLGVARKRG------------------------------------EGSWEILGIMPCMDPPRHDTYKT 543 (920)
T ss_dssp HHHHHHHTSSCCCCEECCCSS------------------------------------SCSCCCCBBCCCCCCCCHHHHHH
T ss_pred HHHHHHHhCCCEEEEEEEecc------------------------------------ccccEEEEEEEEeccccccHHHH
Confidence 356889999999999998720 56889999999999999999999
Q ss_pred HHHHhh
Q psy1679 82 IANLLL 87 (250)
Q Consensus 82 I~~l~~ 87 (250)
|+.||+
T Consensus 544 I~~l~~ 549 (920)
T 1mhs_A 544 VCEAKT 549 (920)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999998
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=98.59 E-value=5.6e-09 Score=105.09 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=53.0
Q ss_pred hHHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCcEEEEEeeeecCCCCChHHH
Q psy1679 2 DDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDVPKT 81 (250)
Q Consensus 2 ~~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L~l~G~t~ieD~Lq~~V~et 81 (250)
+++++++++|+|||++|+|++++++. +..|+||+++|++|++||+|+|++++
T Consensus 445 ~~~~~~a~~G~rvl~vA~~~~~~~~~----------------------------~~~e~~l~~lGli~i~Dp~R~~a~~a 496 (885)
T 3b8c_A 445 SIIDKYAERGLRSLAVARQVVPEKTK----------------------------ESPGAPWEFVGLLPLFDPPRHDSAET 496 (885)
T ss_dssp HHHHHHTTTTCEEEEECCBCCCSSSS----------------------------SCCCCCCCCCEEEEECCCCCHHHHHH
T ss_pred HHHHHHHhCCCeEEEEEEeccccccc----------------------------cccccCcEEEEEEEeecccchhHHHH
Confidence 35788999999999999998865320 24589999999999999999999999
Q ss_pred HHHHhhccc
Q psy1679 82 IANLLLAVT 90 (250)
Q Consensus 82 I~~l~~a~~ 90 (250)
|+.||+|++
T Consensus 497 I~~l~~aGI 505 (885)
T 3b8c_A 497 IRRALNLGV 505 (885)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999876
No 6
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=96.92 E-value=0.00098 Score=65.59 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred hhcCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 58 LESDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 58 iE~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
+..|++++|+++++|++|++++++|+.||++++
T Consensus 520 va~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi 552 (723)
T 3j09_A 520 VARNGRVEGIIAVSDTLKESAKPAVQELKRMGI 552 (723)
T ss_dssp EEETTEEEEEEEEECCSCTTHHHHHHHHHHTTC
T ss_pred EEECCEEEEEEeecCCcchhHHHHHHHHHHCCC
Confidence 345789999999999999999999999999876
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.0012 Score=64.13 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=29.6
Q ss_pred hcCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 59 ESDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 59 E~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
..|++++|.++++|++|++++++|+.||++++
T Consensus 443 a~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi 474 (645)
T 3j08_A 443 ARNGRVEGIIAVSDTLKESAKPAVQELKRMGI 474 (645)
T ss_dssp EETTEEEEEEEEECCCTTTHHHHHHHHHHTTC
T ss_pred EECCEEEEEEEecCCchhHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999876
No 8
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=96.57 E-value=0.0027 Score=62.65 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=28.5
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhccc
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAVT 90 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~ 90 (250)
.|.+++|+++++|+++++++++|+.||++++
T Consensus 541 ~d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi 571 (736)
T 3rfu_A 541 VDGKTVALLVVEDPIKSSTPETILELQQSGI 571 (736)
T ss_dssp ETTEEEEEEEEECCBCSSHHHHHHHHHHHTC
T ss_pred ECCEEEEEEEeeccchhhHHHHHHHHHHCCC
Confidence 3568999999999999999999999999876
No 9
>2uuz_A GAMS, HOST-nuclease inhibitor protein GAM; recbcd inhibitor, putative DNA mimic; 2.3A {Bacteriophage lambda} PDB: 2uv1_A
Probab=57.58 E-value=13 Score=26.17 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCc
Q psy1679 25 NFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL 62 (250)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L 62 (250)
-|-+.|...|++. .||++-.++.+.+|++|
T Consensus 11 iE~~~W~rHYqqi--------aREEkEaELADd~ekgl 40 (99)
T 2uuz_A 11 LEAQSWARHYQQL--------AREEKEAELADDMEKGI 40 (99)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHccc
Confidence 3668899888866 47788889999999986
No 10
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=56.37 E-value=12 Score=31.96 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhcc-cc--ccHHHHHHHHHHhhhcCcEEE----EEeeeecCCC
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENE-IG--EAKEEKLNHLYDELESDLDLV----GVTAIEDKLQ 75 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~-~~--~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq 75 (250)
..++.++.|-.-+.+. +++.+|.+++.+.-++.....- .+ ...+++++++.+. -.++.+. |.||....+.
T Consensus 117 f~~~~~~aGvdGvIip--Dlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~-~~gfiY~vs~~GvTG~~~~~~ 193 (271)
T 3nav_A 117 FYQRCQKAGVDSVLIA--DVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQL-GKGYTYLLSRAGVTGAETKAN 193 (271)
T ss_dssp HHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHH-CCSCEEECCCC--------CC
T ss_pred HHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHH-CCCeEEEEeccCCCCcccCCc
Confidence 3455566777776664 7888887777665554432200 11 1235677766555 6788777 9999988888
Q ss_pred CChHHHHHHHhhcc
Q psy1679 76 DDVPKTIANLLLAV 89 (250)
Q Consensus 76 ~~V~etI~~l~~a~ 89 (250)
+++.+.++.+|+..
T Consensus 194 ~~~~~~v~~vr~~~ 207 (271)
T 3nav_A 194 MPVHALLERLQQFD 207 (271)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhc
Confidence 88999999999853
No 11
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=52.74 E-value=19 Score=24.08 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.7
Q ss_pred cChhHHHHHHHHHHHHhhh
Q psy1679 22 VDENFYNRWKLKHSQIVME 40 (250)
Q Consensus 22 l~~~~~~~~~~~~~~a~~~ 40 (250)
-++++|+.|.++++..+..
T Consensus 36 ~~pqqYQ~~q~q~~A~eaa 54 (66)
T 1zw0_A 36 GDAKQYQVWQRESKALESA 54 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4789999999998877666
No 12
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=39.81 E-value=26 Score=28.38 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CcEEEEEeeeecCCCCChHHHHHHHhhccceeeeeecc
Q psy1679 61 DLDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCGF 98 (250)
Q Consensus 61 ~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~gf 98 (250)
+-.++|....+|++.+|++++++.|++.+.-..+.++-
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~ 169 (280)
T 3skx_A 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGD 169 (280)
T ss_dssp TTEEEEEEEEEEEECTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEEEecCCCCHhHHHHHHHHHHCCCEEEEEeCC
Confidence 45678999999999999999999999987755555543
No 13
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=39.35 E-value=65 Score=26.71 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred cEEEEEeeeecCCCCChHHHHHHHhhccceeeeeecc
Q psy1679 62 LDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCGF 98 (250)
Q Consensus 62 L~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~gf 98 (250)
-.+.|....++++.+|++|+++.|++++.-..+.++-
T Consensus 152 ~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~ 188 (287)
T 3a1c_A 152 GRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGD 188 (287)
T ss_dssp TEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEeCC
Confidence 4778888889999999999999999987755555543
No 14
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=34.61 E-value=32 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcC
Q psy1679 25 NFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESD 61 (250)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~ 61 (250)
+-+..|..+|+.-+.. -.++++.|.++.++-|++
T Consensus 48 nLfHkWLDRHRdMCEk---w~nkee~L~KLkEeW~~e 81 (81)
T 2lkl_A 48 DLLHKWLDRHRDMCEK---WKSKEDILHKLNEQWNKD 81 (81)
T ss_dssp HHHHHHHHHTGGGGGG---TCCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHccC
Confidence 4678899999888777 778889999888877654
No 15
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=40.65 E-value=8.4 Score=32.15 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=29.4
Q ss_pred cCcEEEEEeeeecCCCCChHHHHHHHhhccceeeeeec
Q psy1679 60 SDLDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCG 97 (250)
Q Consensus 60 ~~L~l~G~t~ieD~Lq~~V~etI~~l~~a~~~f~~~~g 97 (250)
.+-.+.|..+.+|++++|++|+++.|++.+.-..+.+|
T Consensus 123 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~ 160 (263)
T 2yj3_A 123 INGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSG 160 (263)
Confidence 34467889999999999999999999987653333333
No 16
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli}
Probab=33.99 E-value=19 Score=28.29 Aligned_cols=18 Identities=44% Similarity=0.359 Sum_probs=15.0
Q ss_pred HhhhcCcEEEEEeeeecC
Q psy1679 56 DELESDLDLVGVTAIEDK 73 (250)
Q Consensus 56 ~~iE~~L~l~G~t~ieD~ 73 (250)
.+.|+||+|+|.+|.-|.
T Consensus 148 ~~~E~~L~f~G~~g~~~~ 165 (170)
T 3gwi_A 148 RADESDLILEGYIAFLDH 165 (170)
T ss_dssp GGGSCSEEEEEEEEEEC-
T ss_pred ccccCCcEEEehhccccc
Confidence 356999999999999885
No 17
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=33.59 E-value=42 Score=28.46 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=48.2
Q ss_pred HHHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhcc-cc--ccHHHHHHHHHHhhhcCcEEE----EEeeeecCCC
Q psy1679 3 DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENE-IG--EAKEEKLNHLYDELESDLDLV----GVTAIEDKLQ 75 (250)
Q Consensus 3 ~~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~-~~--~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq 75 (250)
.+++.++.|-.-+.+. +++.+|.+++.+.-++.....- .+ ...+++++++.+. -.++.++ |.||......
T Consensus 115 f~~~~~~aGvdgvii~--Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~-~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 115 FYTKAQAAGVDSVLIA--DVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQ-GEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHHHHHHTCCEEEET--TSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH-CCSCEEESCCCCCC-------
T ss_pred HHHHHHHcCCCEEEeC--CCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHh-CCCcEEEEecCCCCCCccCCc
Confidence 4566777788777665 7777877777766555432200 01 1235677766555 4455444 8899888788
Q ss_pred CChHHHHHHHhhc
Q psy1679 76 DDVPKTIANLLLA 88 (250)
Q Consensus 76 ~~V~etI~~l~~a 88 (250)
+++.+.|+.+|+.
T Consensus 192 ~~~~~~v~~vr~~ 204 (267)
T 3vnd_A 192 EPIENILTQLAEF 204 (267)
T ss_dssp -CHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999999985
No 18
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.16 E-value=60 Score=21.86 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=15.1
Q ss_pred cChhHHHHHHHHHHHHhhh
Q psy1679 22 VDENFYNRWKLKHSQIVME 40 (250)
Q Consensus 22 l~~~~~~~~~~~~~~a~~~ 40 (250)
.+|++|+.|.++++.....
T Consensus 42 ~~pqqyQ~~~qQ~~AieAa 60 (70)
T 2uwj_E 42 ACPERFQFLQQQARALEGG 60 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4789999999888766655
No 19
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.55 E-value=41 Score=25.18 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=16.9
Q ss_pred HHhhhccceeEEEEEEcChhHHHH
Q psy1679 6 NFASDGLRTLVLAVRDVDENFYNR 29 (250)
Q Consensus 6 ~~a~~GlRtL~~a~k~l~~~~~~~ 29 (250)
-+...|++++-++. ..++++.-+
T Consensus 26 ~l~~~G~~Vi~lG~-~~p~e~~v~ 48 (137)
T 1ccw_A 26 AFTNAGFNVVNIGV-LSPQELFIK 48 (137)
T ss_dssp HHHHTTCEEEEEEE-EECHHHHHH
T ss_pred HHHHCCCEEEECCC-CCCHHHHHH
Confidence 46778999998887 577766543
No 20
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=25.27 E-value=55 Score=24.99 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=26.9
Q ss_pred hccceeEEEEEEcChhHHHHHHHHHHHHhhhccccccHHHHHHHHHHhhhcCc
Q psy1679 10 DGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL 62 (250)
Q Consensus 10 ~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~~~~r~~~l~~~~~~iE~~L 62 (250)
.|.|+++++.| .++++-..|. +..+.+.+.+.+.++-+.+..-.+.||+++
T Consensus 1 ~G~KvMviGkK-~~peee~~lK-kL~dveksv~~~~k~l~~l~~el~~iekGF 51 (135)
T 1i6z_A 1 GSPEFMLIGEK-SNPEEEVELK-KLKDLEVSAEKIANHLQELNKELSGIQQGF 51 (135)
T ss_dssp CCCCCSSSCCC-CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCceEEEeCCC-CChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 48999999954 6666656665 223333331112233333333445566765
No 21
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=25.13 E-value=19 Score=30.48 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhhccc-c--ccHHHHHHHHHHhhhcCcEEE----EEeeeecCCCCC
Q psy1679 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEI-G--EAKEEKLNHLYDELESDLDLV----GVTAIEDKLQDD 77 (250)
Q Consensus 5 ~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~~~~-~--~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq~~ 77 (250)
++-++.|-.-+.+. +++.||.++|.+.-++.....-. + ...+++++++.+. -+++.++ |.||.+....++
T Consensus 110 ~~~~~aGvdG~Iip--DLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~-a~gFiY~Vs~~GvTG~~~~~~~~ 186 (252)
T 3tha_A 110 KKAKSLGICALIVP--ELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH-AKGFIYLLASIGITGTKSVEEAI 186 (252)
T ss_dssp HHHHHTTEEEEECT--TCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTT-CCSCEEEECCSCSSSCSHHHHHH
T ss_pred HHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHh-CCCeEEEEecCCCCCcccCCCHH
Confidence 34455566655555 57777777776655554332100 1 1235666666444 5666554 678888777777
Q ss_pred hHHHHHHHhhc
Q psy1679 78 VPKTIANLLLA 88 (250)
Q Consensus 78 V~etI~~l~~a 88 (250)
+.+.++.+|+.
T Consensus 187 ~~~~v~~vr~~ 197 (252)
T 3tha_A 187 LQDKVKEIRSF 197 (252)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 88889998874
No 22
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=22.27 E-value=1.1e+02 Score=25.43 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhh-ccc--cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCCC
Q psy1679 4 LNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVME-NEI--GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQD 76 (250)
Q Consensus 4 ~~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~-~~~--~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq~ 76 (250)
++..++.|-.-+.+. +++.++..++.+.-++.... ... ....+++++++.+. ..++.++ |.||...+..+
T Consensus 115 ~~~~~~aGadgii~~--d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~-~~g~v~~~s~~G~tG~~~~~~~ 191 (268)
T 1qop_A 115 YARCEQVGVDSVLVA--DVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY-GRGYTYLLSRSGVTGAENRGAL 191 (268)
T ss_dssp HHHHHHHTCCEEEET--TCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH-CCSCEEEESSSSCCCSSSCC--
T ss_pred HHHHHHcCCCEEEEc--CCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh-CCCcEEEEecCCcCCCccCCCc
Confidence 445555666644443 44455556665554443211 000 11234455555544 3455555 78888888888
Q ss_pred ChHHHHHHHhhcc
Q psy1679 77 DVPKTIANLLLAV 89 (250)
Q Consensus 77 ~V~etI~~l~~a~ 89 (250)
++++-|+.+|+..
T Consensus 192 ~~~~~i~~lr~~~ 204 (268)
T 1qop_A 192 PLHHLIEKLKEYH 204 (268)
T ss_dssp CCHHHHHHHHHTT
T ss_pred hHHHHHHHHHhcc
Confidence 8889999888743
No 23
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=21.11 E-value=1.1e+02 Score=25.45 Aligned_cols=81 Identities=11% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHhhhccceeEEEEEEcChhHHHHHHHHHHHHhhh-ccc--cccHHHHHHHHHHhhhcCcEEE----EEeeeecCCC-C
Q psy1679 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVME-NEI--GEAKEEKLNHLYDELESDLDLV----GVTAIEDKLQ-D 76 (250)
Q Consensus 5 ~~~a~~GlRtL~~a~k~l~~~~~~~~~~~~~~a~~~-~~~--~~~r~~~l~~~~~~iE~~L~l~----G~t~ieD~Lq-~ 76 (250)
+.-++.|-.-+.+. +++.++..+|.+.-++.... ... ....+++++++.+.- .++.+. |.||...+.. +
T Consensus 116 ~~~~~aG~dgvii~--dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a-~gfiy~vs~~g~TG~~~~~~~~ 192 (262)
T 2ekc_A 116 RLSREKGIDGFIVP--DLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAA-DEMTYFVSVTGTTGAREKLPYE 192 (262)
T ss_dssp HHHHHTTCCEEECT--TCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHC-SSCEEEESSCC---------CH
T ss_pred HHHHHcCCCEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC-CCCEEEEecCCccCCCCCcCcc
Confidence 33445566644443 56667777776655443211 000 112345666665554 455555 7999998877 7
Q ss_pred ChHHHHHHHhhc
Q psy1679 77 DVPKTIANLLLA 88 (250)
Q Consensus 77 ~V~etI~~l~~a 88 (250)
++++.|+.+|+.
T Consensus 193 ~~~~~v~~vr~~ 204 (262)
T 2ekc_A 193 RIKKKVEEYREL 204 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHhh
Confidence 788999999984
No 24
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.62 E-value=84 Score=23.06 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEeeeecCCCCChHHHHHHHhhc
Q psy1679 64 LVGVTAIEDKLQDDVPKTIANLLLA 88 (250)
Q Consensus 64 l~G~t~ieD~Lq~~V~etI~~l~~a 88 (250)
=+|+.-|.+++-+.++++|+.+++.
T Consensus 44 digIIlIte~ia~~i~~~i~~~~~~ 68 (115)
T 3aon_B 44 EYGVIYITEQCANLVPETIERYKGQ 68 (115)
T ss_dssp TEEEEEEEHHHHTTCHHHHHHHHTS
T ss_pred CceEEEEeHHHHHHhHHHHHHHhCC
Confidence 3899999999999999999998763
Done!