RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1679
(250 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 7e-05
Identities = 40/252 (15%), Positives = 69/252 (27%), Gaps = 74/252 (29%)
Query: 54 LYDELESDLDLVGVTAIEDKLQDDVPKTIANLLLAVTLYALFCGFSAQTI-------FDP 106
L ++ L E DD P T A L+ F G+ + + FD
Sbjct: 33 LQEQFNKILP----EPTEGFAADDEPTTPAELV------GKFLGYVSSLVEPSKVGQFDQ 82
Query: 107 MYISVFNLFYTSLPILTN-------AVLDQDVSDTNSIRYP--KLYTPGMHNLLFNEREF 157
+ F L A L Q+ T K Y +R F
Sbjct: 83 VLNLCLTEFENC--YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPF 137
Query: 158 VYCSLHGFYTSA----VMFFVIYGTFIHGVSSNGRTFSD-------Y--------VFMAT 198
S + + I+G G + F + Y F A
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFG----GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 199 VLAFILVAVVSVQILF----DTQYW----------TYINT--LSM----LVSIASYFVFT 238
L+ ++ + + +F + W Y+ + +S ++ +A Y V
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 239 YVFSTGRPAVRD 250
+ +R
Sbjct: 254 KLLGFTPGELRS 265
Score = 37.0 bits (85), Expect = 0.006
Identities = 38/219 (17%), Positives = 76/219 (34%), Gaps = 49/219 (22%)
Query: 32 LKH-SQIVMENEIGEAKEEKLNHLYDELESDLDLVG--VTAIEDKLQDDVPKTIANLLLA 88
L + S +V +++G+ ++ LN E E+ L G + A+ KL + T+
Sbjct: 65 LGYVSSLVEPSKVGQF-DQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 89 VTLYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIRYPKLYTP--- 145
+ Y +A+ + F+ S L AV + + +L
Sbjct: 123 IKNY-----ITARIMAK----RPFDKKSNSA--LFRAVGEGNA---------QLVAIFGG 162
Query: 146 -GMHNLLFNE-REFVYCSLHGFYTSAVMFFVIY-----GTFIHGVSSNGRTFSDYVFMAT 198
G + F E R+ +Y + Y V + + I + F+ + +
Sbjct: 163 QGNTDDYFEELRD-LYQT----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 199 VL---------AFILVAVVSVQILFDTQYWTYINTLSML 228
L ++L +S ++ Q Y+ T +L
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.002
Identities = 32/257 (12%), Positives = 68/257 (26%), Gaps = 82/257 (31%)
Query: 25 NFYNRWK-LKHSQI-----VMENEIGEAKEEKLNHLYDELESDLDLVGVTAIEDKLQDDV 78
+ W KH ++E+ + + + ++D L ++
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----------SV---FPPSA 385
Query: 79 PKTIANLLLAVTLYALFCGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTNSIR 138
L ++ D M + V L SL +++ ++I
Sbjct: 386 HIPTI------LLSLIWFDVIKS---DVMVV-VNKLHKYSL-------VEKQ-PKESTIS 427
Query: 139 YPKLY---------TPGMHNLLFNEREFV--YCSLHG--------FYTSAVMFFVIYGTF 179
P +Y +H + + + S FY + +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SHIGH--- 479
Query: 180 IH--------GVSSNGRTFSDYVFMATVLAFILVAVVSVQILFDT-----QYWTYI---- 222
H ++ F D+ F+ + A + + +T Y YI
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 223 NTLSMLVSIASYFVFTY 239
LV+ F+
Sbjct: 539 PKYERLVNAILDFLPKI 555
Score = 33.7 bits (76), Expect = 0.066
Identities = 27/144 (18%), Positives = 45/144 (31%), Gaps = 38/144 (26%)
Query: 22 VDENFYNRWKLKHSQIVMENEIG----EAKEEKLNHLYDELESDLDLVGVTAIEDKLQDD 77
+D+ FY+ H IG + + L+ + D + D +
Sbjct: 469 LDQYFYS-----H--------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 78 VPKTIANLLLAVTLYALFCGFSAQTIFD--PMYISVFNLFYTSLPILTNAVLDQDVSDTN 135
+I N L + Y + I D P Y + N LP + + N
Sbjct: 516 ASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKI----------EEN 558
Query: 136 SIRYPKLYTPGMHNLLFNEREFVY 159
I YT + L E E ++
Sbjct: 559 LICSK--YTDLLRIALMAEDEAIF 580
Score = 32.5 bits (73), Expect = 0.16
Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 27/154 (17%)
Query: 14 TLVLAV-RD--VDENFYNR--WKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGVT 68
+ L V V + W L + E L L +++ +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDH 219
Query: 69 AIEDKLQDDVPKTIANLLLAVTLY--ALFCGFSAQTIFD----PMYISVFNLFYTSLPIL 122
+ KL+ + LL Y L + + FNL L +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNVQNAKAWNAFNLSCKIL-LT 271
Query: 123 TNAVLDQDVSDTNSIRYPKLYTPGMHNLLFNERE 156
T + V+D S + H++ E
Sbjct: 272 TR---FKQVTDFLSAATTTHISLDHHSMTLTPDE 302
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.024
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 18 AVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL 62
A +D++E + R + + + N A + Y + ++D+
Sbjct: 116 AKKDLEE-WNQRQSEQVEKNKINNR--IADKA----FYQQPDADI 153
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 33.8 bits (78), Expect = 0.045
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 28/88 (31%)
Query: 1 MDDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELES 60
+ ++ +A GLR+L +A + V E + +
Sbjct: 444 LSIIDKYAERGLRSLAVARQVVPEKT----------------------------KESPGA 475
Query: 61 DLDLVGVTAIEDKLQDDVPKTIANLLLA 88
+ VG+ + D + D +TI L
Sbjct: 476 PWEFVGLLPLFDPPRHDSAETIRRALNL 503
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 33.4 bits (77), Expect = 0.070
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 17/68 (25%)
Query: 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDL 64
G R L + E+ YN E +A E + +DL
Sbjct: 548 LELGGLGERVLGFCHFALPEDKYN-----------EGYPFDADEP------NFPTTDLCF 590
Query: 65 VGVTAIED 72
VG+ A+ D
Sbjct: 591 VGLMAMID 598
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 32.0 bits (72), Expect = 0.14
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 39 MENEIGEAKEEKLNHLYDELESDLDLVGVT---AIEDKLQDDVPKTIANLLLAVTLYALF 95
M E +L L++ + L+ V V +QD V K + L A + +
Sbjct: 21 MAASEDELLLPRLPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQL 80
Query: 96 CGFSAQTIFDPMYISVFNLFYTSLPILTNAVLDQDVSDTN 135
FS + I+ +L Y +P L A+ + V+ +
Sbjct: 81 DLFSRNEDLEE--IASTDLKYLMVPALQGALTMKQVNPSK 118
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 32.2 bits (74), Expect = 0.15
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 17/68 (25%)
Query: 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDL 64
+ G R L + E Y + + + S L
Sbjct: 553 LSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAM-----------------NFPTSGLSF 595
Query: 65 VGVTAIED 72
G+ ++ D
Sbjct: 596 AGLVSMID 603
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 32.2 bits (74), Expect = 0.18
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 18/65 (27%)
Query: 8 ASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDLVGV 67
D LR L LA RD E + + E E+DL VGV
Sbjct: 556 GRDTLRCLALATRDTPPK------------------REEMVLDDSSRFMEYETDLTFVGV 597
Query: 68 TAIED 72
+ D
Sbjct: 598 VGMLD 602
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 29.9 bits (68), Expect = 0.49
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 25/68 (36%)
Query: 5 NNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDLDL 64
+ GLR + +A + + E + ESDL L
Sbjct: 122 DTLNRQGLRVVAVATKYLPAR--------------EGDYQR-----------ADESDLIL 156
Query: 65 VGVTAIED 72
G A D
Sbjct: 157 EGYIAFLD 164
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 27.7 bits (62), Expect = 4.8
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 36/86 (41%)
Query: 1 MDDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELES 60
+ + FA+ G R+L +A + E
Sbjct: 499 KNKVAEFATRGFRSLGVARKRG------------------------------------EG 522
Query: 61 DLDLVGVTAIEDKLQDDVPKTIANLL 86
+++G+ D + D KT+
Sbjct: 523 SWEILGIMPCMDPPRHDTYKTVCEAK 548
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 26.4 bits (59), Expect = 9.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 51 LNHLYDELESDLDLVGVTAIED 72
L++ +L + L G +ED
Sbjct: 332 LDYFQKDLTRVMQLTGSQNVED 353
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.410
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,768,070
Number of extensions: 216183
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 21
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)