RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1679
         (250 letters)



>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 239

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 18/68 (26%)

Query: 3   DLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELESDL 62
                  D LR L LA RD             S+                  + E E+DL
Sbjct: 190 KEWGTGRDTLRCLALATRDTPPKREEMVLDDSSR------------------FMEYETDL 231

Query: 63  DLVGVTAI 70
             VGV  +
Sbjct: 232 TFVGVVGM 239


>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
           chain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 214

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 17/72 (23%)

Query: 1   MDDLNNFASDGLRTLVLAVRDVDENFYNRWKLKHSQIVMENEIGEAKEEKLNHLYDELES 60
            +        G R L     ++    + R                   +      +    
Sbjct: 154 QNAYLELGGLGERVLGFCQLNLPSGKFPRG-----------------FKFDTDELNFPTE 196

Query: 61  DLDLVGVTAIED 72
            L  VG+ ++ D
Sbjct: 197 KLCFVGLMSMID 208


>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
          {Thermus aquaticus [TaxId: 271]}
          Length = 409

 Score = 25.4 bits (54), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 48 EEKLNHLYDELESDL 62
          EE+L  LY E+E  L
Sbjct: 1  EERLLWLYREVERPL 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,501
Number of extensions: 39728
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 6
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)