BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16791
         (126 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
           States Of The Cusba Adaptor-Transporter Complex
 pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
           Adaptor- Transporter Complex
 pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
           Adaptor- Transporter Complex
          Length = 1054

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 819 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 873


>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
           From Escherichia Coli
          Length = 1054

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 819 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 873


>pdb|3K07|A Chain A, Crystal Structure Of Cusa
 pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
           Cusa
 pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
           Cusa
 pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
          Length = 1055

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 820 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 874


>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
           From Escherichia Coli, R Mutant
          Length = 1054

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 819 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 873


>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
           From Escherichia Coli, E716f Mutant
          Length = 1054

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 819 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 873


>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
           From Escherichia Coli, Mutant
          Length = 1054

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 1   MFGTFYVAPTLYCWLSIARRKWPKPTLSHSLKKALVEQVTYTPFAMISFYFGMTLLE 57
           M  T    PT   W+ I  R     ++ H L+KA+ E+V   P   ++F     LLE
Sbjct: 819 MLKTENARPT--SWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLE 873


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,847,029
Number of Sequences: 62578
Number of extensions: 135724
Number of successful extensions: 289
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 11
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)